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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014448 Staphylococcus aureus strain USA300-SUR24 plasmid pUSA08-1-SUR24, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP014444 Staphylococcus aureus strain USA300-SUR24 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 8 4 9 0
NZ_CP014447 Staphylococcus aureus strain USA300-SUR24 plasmid pUSA07-1-SUR24, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP014445 Staphylococcus aureus strain USA300-SUR24 plasmid pUSA04-1-SUR24, complete sequence 0 crisprs csa3 0 0 2 0
NZ_CP014446 Staphylococcus aureus strain USA300-SUR24 plasmid pUSA05-1-SUR24, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP014444
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_1 433395-433495 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_2 672550-672642 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_3 848361-848446 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_4 891690-891771 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_5 998087-998369 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_6 1131759-1131846 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_7 2077077-2077155 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_8 2312141-2312291 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014444_9 2436059-2436252 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP014444_4 4.1|891714|34|NZ_CP014444|CRISPRCasFinder 891714-891747 34 NZ_CP014444.1 1424259-1424292 0 1.0
NZ_CP014444_4 4.1|891714|34|NZ_CP014444|CRISPRCasFinder 891714-891747 34 NZ_CP014444.1 1513451-1513484 0 1.0
NZ_CP014444_9 9.2|2436138|36|NZ_CP014444|CRT 2436138-2436173 36 NZ_CP014444.1 1216034-1216069 0 1.0
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP014444.1 811328-811353 1 0.962
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP014444.1 2877376-2877401 1 0.962
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP014444.1 2877432-2877457 1 0.962
NZ_CP014444_5 5.1|998117|26|NZ_CP014444|CRT 998117-998142 26 NZ_CP014444.1 998061-998086 1 0.962
NZ_CP014444_5 5.3|998231|26|NZ_CP014444|CRT 998231-998256 26 NZ_CP014444.1 848447-848472 1 0.962
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 848427-848459 1 0.97
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 1216090-1216122 1 0.97
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 1424214-1424246 1 0.97
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 1742015-1742047 1 0.97
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 2712019-2712051 1 0.97
NZ_CP014444_9 9.2|2436138|36|NZ_CP014444|CRT 2436138-2436173 36 NZ_CP014444.1 1920467-1920502 1 0.972
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP014444.1 811384-811409 2 0.923
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP014444.1 998061-998086 2 0.923
NZ_CP014444_5 5.1|998117|26|NZ_CP014444|CRT 998117-998142 26 NZ_CP014444.1 811328-811353 2 0.923
NZ_CP014444_5 5.1|998117|26|NZ_CP014444|CRT 998117-998142 26 NZ_CP014444.1 2877376-2877401 2 0.923
NZ_CP014444_5 5.1|998117|26|NZ_CP014444|CRT 998117-998142 26 NZ_CP014444.1 2877432-2877457 2 0.923
NZ_CP014444_5 5.3|998231|26|NZ_CP014444|CRT 998231-998256 26 NZ_CP014444.1 394728-394753 2 0.923
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NZ_CP014444.1 1513497-1513529 2 0.939
NZ_CP014444_9 9.1|2436082|33|NZ_CP014444|CRT 2436082-2436114 33 NZ_CP014444.1 848427-848459 2 0.939
NZ_CP014444_9 9.1|2436082|33|NZ_CP014444|CRT 2436082-2436114 33 NZ_CP014444.1 1216090-1216122 2 0.939
NZ_CP014444_9 9.1|2436082|33|NZ_CP014444|CRT 2436082-2436114 33 NZ_CP014444.1 1424214-1424246 2 0.939
NZ_CP014444_9 9.1|2436082|33|NZ_CP014444|CRT 2436082-2436114 33 NZ_CP014444.1 1513497-1513529 2 0.939
NZ_CP014444_9 9.1|2436082|33|NZ_CP014444|CRT 2436082-2436114 33 NZ_CP014444.1 2712019-2712051 2 0.939
NZ_CP014444_9 9.2|2436138|36|NZ_CP014444|CRT 2436138-2436173 36 NZ_CP014444.1 1741954-1741989 2 0.944
NZ_CP014444_9 9.2|2436138|36|NZ_CP014444|CRT 2436138-2436173 36 NZ_CP014444.1 2087844-2087879 2 0.944
NZ_CP014444_9 9.3|2436197|33|NZ_CP014444|CRT 2436197-2436229 33 NZ_CP014444.1 848427-848459 2 0.939
NZ_CP014444_9 9.3|2436197|33|NZ_CP014444|CRT 2436197-2436229 33 NZ_CP014444.1 1216090-1216122 2 0.939
NZ_CP014444_9 9.3|2436197|33|NZ_CP014444|CRT 2436197-2436229 33 NZ_CP014444.1 1424214-1424246 2 0.939
NZ_CP014444_9 9.3|2436197|33|NZ_CP014444|CRT 2436197-2436229 33 NZ_CP014444.1 2712019-2712051 2 0.939

1. spacer 4.1|891714|34|NZ_CP014444|CRISPRCasFinder matches to position: 1424259-1424292, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|891714|34|NZ_CP014444|CRISPRCasFinder matches to position: 1513451-1513484, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 9.2|2436138|36|NZ_CP014444|CRT matches to position: 1216034-1216069, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to position: 811328-811353, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

5. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to position: 2877376-2877401, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

6. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to position: 2877432-2877457, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

7. spacer 5.1|998117|26|NZ_CP014444|CRT matches to position: 998061-998086, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 5.3|998231|26|NZ_CP014444|CRT matches to position: 848447-848472, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 848427-848459, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 1216090-1216122, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 1424214-1424246, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 1742015-1742047, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

13. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 2712019-2712051, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 9.2|2436138|36|NZ_CP014444|CRT matches to position: 1920467-1920502, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to position: 811384-811409, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to position: 998061-998086, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 5.1|998117|26|NZ_CP014444|CRT matches to position: 811328-811353, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

18. spacer 5.1|998117|26|NZ_CP014444|CRT matches to position: 2877376-2877401, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

19. spacer 5.1|998117|26|NZ_CP014444|CRT matches to position: 2877432-2877457, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

20. spacer 5.3|998231|26|NZ_CP014444|CRT matches to position: 394728-394753, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to position: 1513497-1513529, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 9.1|2436082|33|NZ_CP014444|CRT matches to position: 848427-848459, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 9.1|2436082|33|NZ_CP014444|CRT matches to position: 1216090-1216122, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 9.1|2436082|33|NZ_CP014444|CRT matches to position: 1424214-1424246, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 9.1|2436082|33|NZ_CP014444|CRT matches to position: 1513497-1513529, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

26. spacer 9.1|2436082|33|NZ_CP014444|CRT matches to position: 2712019-2712051, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 9.2|2436138|36|NZ_CP014444|CRT matches to position: 1741954-1741989, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 9.2|2436138|36|NZ_CP014444|CRT matches to position: 2087844-2087879, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 9.3|2436197|33|NZ_CP014444|CRT matches to position: 848427-848459, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2436197|33|NZ_CP014444|CRT matches to position: 1216090-1216122, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 9.3|2436197|33|NZ_CP014444|CRT matches to position: 1424214-1424246, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 9.3|2436197|33|NZ_CP014444|CRT matches to position: 2712019-2712051, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014444_5 5.4|998287|53|NZ_CP014444|CRT 998287-998339 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP014444_3 3.1|848391|26|NZ_CP014444|CRISPRCasFinder 848391-848416 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP014444_5 5.3|998231|26|NZ_CP014444|CRT 998231-998256 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP014444_7 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder 2077100-2077132 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 5.4|998287|53|NZ_CP014444|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 3.1|848391|26|NZ_CP014444|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 5.3|998231|26|NZ_CP014444|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 7.1|2077100|33|NZ_CP014444|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 780019 : 787839 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 799811 : 814542 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 893252 : 960238 92 Staphylococcus_phage(63.86%) plate,capsid,tail,holin,head,terminase,integrase,portal attL 901055:901074|attR 957017:957036
DBSCAN-SWA_4 1116983 : 1125456 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1567223 : 1652759 106 Staphylococcus_phage(84.21%) plate,capsid,tail,holin,head,protease,terminase,tRNA,integrase,portal attL 1603586:1603606|attR 1652764:1652784
DBSCAN-SWA_6 1713577 : 1721889 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1791026 : 1800069 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1925530 : 2004862 74 Staphylococcus_phage(94.83%) protease,transposase,tRNA NA
DBSCAN-SWA_9 2088500 : 2186374 116 Staphylococcus_phage(90.79%) capsid,tail,holin,head,protease,terminase,tRNA,integrase,portal attL 2151365:2151382|attR 2176296:2176313
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP014445
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 11744 11 Streptococcus_phage(40.0%) transposase NA
DBSCAN-SWA_2 18073 : 25912 7 Staphylococcus_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage