CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019511	Sphingomonas sp. LM7 chromosome, complete genome	2 crisprs	csa3,WYL,RT,DinG,DEDDh,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019511_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019511_1

1149526-1149636

Orphan

Consensus_repeat	Method
CTGCGCCGATGATCGTGCCGGTGGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019511_1

>merge|NZ_CP019511|1|1149526-1149636|CRISPRCasFinder
CTGCGCCGATGATCGTGCCGGTGGTGCTGCGGCCGCGATACGAATTGCCGCGGCCAATCTCGCCACCCAGCAAGCCGCCGGCGACTGCGCCGAGGATCGTGCCGGTGGTGC

>NZ_CP019511|1|1|1149526-1149636|CRISPRCasFinder
CTGCGCCGATGATCGTGCCGGTGGTGC	TGCGGCCGCGATACGAATTGCCGCGGCCAATCTCGCCACCCAGCAAGCCGCCGGCGA
CTGCGCCGAGGATCGTGCCGGTGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019511.1\|WP_150125420.1\|1148474_1149158_-\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP019511.1\|WP_077509148.1\|1155333_1155783_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP019511.1\|WP_077509142.1\|1150061_1150280_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019511.1\|WP_077509135.1\|1139181_1140168_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP019511.1\|WP_077509133.1\|1138103_1138658_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP019511.1\|WP_077509146.1\|1152765_1153314_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176859
NZ_CP019511.1\|WP_077509143.1\|1150340_1150607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019511.1\|WP_077509147.1\|1153741_1155196_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP019511.1\|WP_171982429.1\|1138654_1139155_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP019511.1\|WP_077509138.1\|1144213_1146259_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP019511.1\|WP_077509139.1\|1146317_1146836_-\|DUF2497-domain-containing-protein	unknown	unknown	gnl\|CDD\|371195
NZ_CP019511.1\|WP_077509137.1\|1141307_1144166_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP019511.1\|WP_077509145.1\|1151458_1152643_-\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
NZ_CP019511.1\|WP_171982430.1\|1153324_1153483_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019511.1\|WP_077509140.1\|1146871_1148458_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP019511.1\|WP_077509132.1\|1135839_1138080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019511.1\|WP_077509136.1\|1140271_1141132_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183857
NZ_CP019511.1\|WP_077509144.1\|1150652_1151447_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP019511.1\|WP_077509149.1\|1155782_1156718_+\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NZ_CP019511.1\|WP_077509150.1\|1156711_1157035_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019511.1\|WP_150125420.1\|1148474_1149158_-\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	3.27458e-45
NZ_CP019511.1\|WP_077509135.1\|1139181_1140168_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP019511.1\|WP_077509133.1\|1138103_1138658_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9147e-31
NZ_CP019511.1\|WP_077509146.1\|1152765_1153314_-\|SRPBCC-family-protein	gnl\|CDD\|176859	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.49259e-52
NZ_CP019511.1\|WP_077509148.1\|1155333_1155783_+\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	2.06946e-15
NZ_CP019511.1\|WP_077509147.1\|1153741_1155196_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	7.14908e-170
NZ_CP019511.1\|WP_171982429.1\|1138654_1139155_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.82639e-20
NZ_CP019511.1\|WP_077509138.1\|1144213_1146259_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.5669e-108
NZ_CP019511.1\|WP_077509144.1\|1150652_1151447_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.48813e-63
NZ_CP019511.1\|WP_077509137.1\|1141307_1144166_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP019511.1\|WP_077509145.1\|1151458_1152643_-\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP019511.1\|WP_077509149.1\|1155782_1156718_+\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	2.05799e-92
NZ_CP019511.1\|WP_077509140.1\|1146871_1148458_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	9.70969e-76
NZ_CP019511.1\|WP_077509136.1\|1140271_1141132_+\|diacylglycerol-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	9.70626e-66
NZ_CP019511.1\|WP_077509139.1\|1146317_1146836_-\|DUF2497-domain-containing-protein	gnl\|CDD\|371195	pfam10691, DUF2497, Protein of unknown function (DUF2497). Members of this family belong to the Alphaproteobacteria. The function of the family is not known.	1.06763e-17

>NZ_CP019511.1|WP_150125420.1|1148474_1149158_-|protein-L-isoaspartate-O-methyltransferase
MMTLSVDPTPVEANRFEAMRHAMVASQLRTNAVSDSRVVEAMARVPRETFLPPEQHALAYRDTLLPLVGGRHHNSPLATGRLLTEAQVRADDHVLLVGSAGGYAAAVLARLARSVVALEEEESLVAIARGALAGEPKVEIVQGPLNAGWAAGGPYDLLIIDGAVEELPEALIAQVKPGGRVLSGVVDRGVTRLAAGRRTEGGFGLMDFIDIECTELPGFRRLRTFTF
>NZ_CP019511.1|WP_077509140.1|1146871_1148458_-|TolC-family-outer-membrane-protein
MRLTSLLLGVSLTALAVPAAAQTTTTRTGTSTPVTVQTAPQTAPSALAPAAQPTTNLREALVQAYKTNPDLAGERANQRANDENVPIARSQGRPGVSSTGSLSNSLYDTDATFGPSRNGRLGLDLSVPVFNGGAVRNSVRAAETRVEAGQANLRGAESDIFTQAVTVYVDVLRDEAIVRLNQQNSRVLEVNLQATRDRFEVGDLTRTDVAQSEARLALAQSQLRTAEARLIGSRENYIRVIGVPPGVLAAPPALPNLPDDVVVAEQTALANNPFLEAAKLARDASRYDVSVARAGRLPQVSVGVGGDYYNYLGSVGSQAATSGLQGDGFATTVGAQVTLPIFQGGRPAAQVRQAQARQAAAIEGVTLTERGVIAQARSTFASYQGALRVIESNRVAVEANRLSLEGVRAENSVGTRTILDILNAEQELLNSQVNYVTAERDAYVAGFTMLASMGRAEAKDLGLDGGPLYDPAANYERVRGRWGDWSDDPTPTGTSTPTLGTPAQGATVTAAPLDPLLQRSVDTTPRNP
>NZ_CP019511.1|WP_077509139.1|1146317_1146836_-|DUF2497-domain-containing-protein
MGDISTEPSMEEILSSIKRIIAEEGDAAVASRTRRGRTGPATTSTARAPRIEAEEAEDEQEDEVLELSDQLEEELQDAPAPVAAAPVEAPASPVREKRVDPILSERAVEATRGPLEALSRMVVKPEVAGSDTLEGLVRELIKPMLRDWLDANLPQIVETMVAREITRITGRN
>NZ_CP019511.1|WP_077509138.1|1144213_1146259_-|S9-family-peptidase
MKHFLLAGVALASAAVPALARDLTIQDVASLSRVGGPAVSPDGKWLVWQQRETDLAANRGRYDLWRLDLGRKGAVPEKLVAEAEVNETGPQFSKDGATVYFQSDKGGEDAVWGVPVTGGAATQLSRIPGGFSGFKVAPTGDRLLVWADRKPGAPSLELPQVKKDANAGSGRTYDQLFVRHWDAWANGDRSQLFVLPFGADGATGNGVAIGGDLIGDTPSKPFGGGEELAWSPDGKTVYFALREAGRIEATSTNLDIFAAPADGSAAPVNLTADNDGTDNLPTVSPDGKWLAYFAMARATYEADRQVLMLRDLASGQVRALTQDWDRSVASIAWAPDGKSLYVTAQDTQEEPIFRVDAKSGKVTRLTQEGVVSAVVPTKNGVVFSMNSLTAPDDFYRLSGKKAERLTSVNAARLAGIDLPKVERFSFTGANNDTVWGYAVKPASLAQGAKAPIAFVVHGGPQGSSNNSWSYRWNPAVFAGAGYAVVSVDFHGSTGYGQAFTDAIRNNWGGWPLEDLQKGLKAATDKFAYLDGDNACALGASYGGYMMNWIAGQWPDRFKCLVQHDGVFDARAMAYETEELWFDEWEHGGKAYFEDPEAFEKWNPVHHVAKWKTPMLVITGEKDFRIPYTQGLASFTALQRREIPSRLVVFPDENHWVLKPKNSMQWYGEVLGWLGKYTKPAQ
>NZ_CP019511.1|WP_077509137.1|1141307_1144166_-|valine--tRNA-ligase
MTELPKTFDPAEIESRWYGHWETKGLFAPERPGADPWTLVNPPPNVTGSLHIGHALDNTLQDILVRHARLKGKDARWVVGTDHAGIATQMVVERQLNAAGSKRTDFTREEFVAKVWEWKEESGGEITQQLRRLGCSMDWANERFTMDEGFSKAVLKVFVELHKQGLIYRDKRLVNWDPGLGTAISDLEVETREIKGNFWHLRYPLEDGSGFIQVATTRPETMLADMAVAVNASDERYAALVGKKVRLPITGRLIPILTDDHADPELGSGAVKITPGHDFNDFEVGRRAGIEARDMLNMLDAKAQITQTSDGLIPAELLGLDRFEARKLVVQRLKDEGFLVPHVDKDGEAHDSEPRTIQTPYGDRSGVVIEPWLTDQWYVDAATLAKPAIEAVRSGATRIVPKSWEKTYFNWMENIQPWCVSRQLWWGHRIPAWFGPDDLPFVAEDEEQAGRLALAHYEQESGRKLKVVFQNSENFRAGNEIVGWIGTAQNVGSNPVDADTVVLRQDPDVLDTWFSSALWPFATMGWPDEDVKALGRYPNDVLISGFDILFFWDARMMMQGLHFMKEVPFKTLYLHGLVRAADGQKMSKSKGNVVNPLGLIDQYGADALRFFMAAMESQGRDIKMDERRIEGYRNFATKLWNAARFAQSNGIGASTTLEPPAAELAVNRWIIAETVATVQALDLALADLRFDEAANTIYQFTWSRFCDWYLELIKPVIQGEGSVPATGAGADETRAVAGWVLDQILVMLHPFMPFITEELWSKMGTRDHEIIVAKWPMADARALDPAAAQEIDWLIRLVSEIRAARTELNVPPGTLLILYVEDDSVSVEVRGRLFRNSAAIERLAKVKPTYLTNSVEEAVIRADLAAGSMSVSAEGLTAYAPLSGVVDLEAERARLTKAIAAAEKERDGLAGRLNNPSFVERAKPEAVEKARADHAEKAAEAERLSAALTRLG
>NZ_CP019511.1|WP_077509136.1|1140271_1141132_+|diacylglycerol-kinase
MIVNAKSRRGQDLFEQACSLMKGLPFPVDAHAVEEPDQLEPTLKRALAAKPDLVILGGGDGTISGLVDFLTGTGAALAVLPLGTANSFARSLGIPLDIPGAIDVIAKGELRRIDLGMIDNDYFANCASMGLSPQIAENIPSGLKRWFGRAGYLGWAAYEFTRFHPFTLIVGEGAEEKRLRVVEVRIANGRFHGGTELIDEASVDSGEIVVQAVQGHARRRLARNWLNSVLRREARHEDTINFTGKSLRIATEPPLPVSIDGEVLAHTPVTARIAAAVIDVMVPRAS
>NZ_CP019511.1|WP_077509135.1|1139181_1140168_-|porphobilinogen-synthase
MSQYPALRLRRTRAAAWSRRMHAETVLTPADLIWPLFVTEGSEEEPIGSLPGVSRWSVKAIAERAKEAAALGIPCIALFPNTPAGLRSDDGREALNPDNLMCRAIRAIKDAVPDIGVLTDVALDPYTSHGHDGIVDAAGYVINDETSAVLTDQALVQAEAGADIVAPSDMMDGRVGLIRSALEANGHVNVQIMAYAAKYASAFYGPFRDAVGSRGLLKGDKKTYQMDPANAEEALREVALDIAEGADSVMVKPGLPYLDIIVRVKNAFEVPVFAYQVSGEYAMIEAAAAAGAGEREALVLETLMAFKRAGTSGVLTYHAPLAARLLGA
>NZ_CP019511.1|WP_171982429.1|1138654_1139155_-|GNAT-family-N-acetyltransferase
MPEPRDRDGLVAMFTNQILMAQLFPGLDEAAADGVIAKHDRLRSEGLGFLAVERREDGALVGFCGLKRGEAHMPIAGAIEAGWIVDLPWWRHGYAREAMQAVLADAWSRIAEDRIYAITSSVNLKSQALMERLGMHRLAEGDYMSASFPEGHTLRPTVTFAIDRPA
>NZ_CP019511.1|WP_077509133.1|1138103_1138658_-|GNAT-family-N-acetyltransferase
MIETERLILRGWRDSDREPFHAMGQDERVMATLGPVLWRDETDAMIDRMTRILVANGFTFWAVERRADGAFLGFCGLKPGAEETPIEGEIEIGWRLAHEYWGKGYAREAAQASLDWGWANLDIAGIAAITTVGNVRSWGLMKRLGMVRAPQDDFDHPKAIERLRPHVTYRIARGAVKPGETGRN
>NZ_CP019511.1|WP_077509132.1|1135839_1138080_-|hypothetical-protein
MNDGLEREGAQRTRFHWLFVVAILAGSFLLFLVQPMVARMALPKLGGAPAVWNSAMLVYQALLLGGYAYAHWLGRVPVRMQAGIHLAVLAVAALWLPIGLTAMELPADAEPALWVPWLFGASIGPLFFAISAQAPLLQRWYSVASGGRDPYALYAASNIGSFGGLIAYPLIVEPGLALKGQSLLWTIGYALVFALVAGCATLLPRKASEEPHVPHHSPPAGRLRVLHWIVLAFVPSGLMLATTTFLTTDIVAMPMLWVLPLGLYLLSFSLAFREGDTIPDLLAKFTPVIVLLFGATLIAGHQKLAYLNALIGLILLFVVAVALHSRMYQLRPAPDRLTGFYLAMSVGGALGGVFSGLVAPVLFDWTYEYPLLILAAGVLMPQAFLLPALARLWQGEGQLLRIKILAAALVVAIFVWLGIFNPGGVLGEMHEQLAFLAVATVGLIATGRRVAYVVALAGGLFLFGGYRAIETSLSGDRTRSYFGVYTVSDLPDEQRLAHGTTLHGIQLKGLRATMPTTYYVPGSGVGQAMLAAPGLYGPAARIGVVGLGTGTLACYAIPGQQWRFYEIDPEVVTIARDSGKFTFLRQCAPQAQMSLGDARIRLAEAAPASLDMLALDAFSSDAVPMHLMTTEAFGTYGRVLAPNGLLLVHISNRFLALAPVVAGAAVQGGWHAARLVYQPSALEQHDQASTSDWIALSRDQATLTRLTQGDPRWQPLAPKPGFRAWTDDYASVVPVMRAFNPSLADD
>NZ_CP019511.1|WP_077509142.1|1150061_1150280_+|hypothetical-protein
MYDFGLRQAHSGYRIAYRPQETNHCPGCGRSHWMIGRMTAECAFCGTALPLVAGGSSGNGVLRPRTAPALAA
>NZ_CP019511.1|WP_077509143.1|1150340_1150607_+|hypothetical-protein
MTDISVTSPIERIARVIAAEALSINGDGQDPSVGGAVDAVWEAEIGRATAVLRTLREPTAEMVEAGRAAGSDPAEIWNAMVRSAIAGE
>NZ_CP019511.1|WP_077509144.1|1150652_1151447_-|SDR-family-NAD(P)-dependent-oxidoreductase
MANKLAVITGASTGIGKEIAKIAVREGYDLIVVADEAQIDAAAGELKGNGANVTSVQADLSSFEGNDQLLAAVGGRPIDVLVANAGLGLGEGFLVQDVADWRRVIDTNVVGTTYLLQKVLRQMVERDSGNVLITGSIAGLIPGAWQAVYNGTKAYLDSLAYALREEIKDTNVNVTVLMPGPTETEFFRRAGMLDTPVGESDKADPAKVAQDGWDAMTGRKPHVVSGFVNKLQAALSHITPDTINAKMHTGMAKPNDEGESRGGL
>NZ_CP019511.1|WP_077509145.1|1151458_1152643_-|glutathione-dependent-formaldehyde-dehydrogenase
MRALTWHGKHDVRMDTVPDPELLNPRDAIIKITSTAICGSDLHLYDSYIPTLEKGDILGHEFMGEVVDVGPKSTLRKGQRVVVPFTISCGSCFHCSKAQFSACDNGNPADNQDLGQTMYGEPMSALFGYTHLTGGYPGGQAEYVRVPFSDVGPIVIPDGLEDDKVLFLSDILPTGWMAAENADIEPGDTVAVWGCGPVGLFAVQSAFKLGAHRVIAIDHFPHRLSLAAGFGAETINFEQTDTYHALMEMTGGIGPDAVIDAVGLEAHGFFADNVIDQIKASTFLGTDRPHALRQAILACRKGGRVSVPGVYGGFLDKFPFGALMEKGLQVKTGQTHVQKYLPKLLEMIGNGELDTTFLISHRLPLEQAPDGYKMFHDEQDSCTKVVLKPGLELA
>NZ_CP019511.1|WP_077509146.1|1152765_1153314_-|SRPBCC-family-protein
MSDVRDDAPSYVSKDSDLQKSEAAGGEGTVWGHTVSIMRPREELYAYWRDFANLATFMHNIEQITVLDRTRSHWKVKGPNGDYEWDSVVTEDVPGTLIAWEAEGDIKNSGRIEFRDGPPGHGTYVRAVLAYDPPAGVVGKLIATFTQKEPQIQSMRDLRRFKQLMETGEIATTTPPNREAYS
>NZ_CP019511.1|WP_171982430.1|1153324_1153483_-|hypothetical-protein
MSGKDLSRGGAGTEGPSLENDENEALQNESRQAVKNQGEATPEDYPERHEQN
>NZ_CP019511.1|WP_077509147.1|1153741_1155196_+|cysteine--tRNA-ligase
MSATLTLYNSLTRSLEPFAPLDPEKGVRVYSCGPTVYNYAHLGNLRAYVFTDTLSRVLTWKGYALTHVINITDVGHLTSDADAGDDKMEAAARAQAKSIWDVAAHYTAAFKQNIADLNIRQPSRWSVATDHIEAMIDFAKQIAPEHCYELDSGLYFDTSTVADYGRLAGTQDDVREGRIDPVAGKRHAQDFAIWRKSPPGERRQMEWDSPWGKGAPGWHLECSVMSLKYLGAPFDIHTGGIDHREIHHPNEIAQNQAYCGCNDTGAHFWMHNNFLVDRQGKMSKSKGGFTTLQSLIDAGVHPLAYRLLCLQAHYRSELEFSAENLAAALTRLKRLVMTVRKILPELASGAGTSEAAQDAEAVRPWLDRLDEAVSDDLNTSRALPILDELLADKRLSPEDKAAALAEFDKVLGLNLLTLTREELRVRPASATLTPEEISDRLVERQQARVVKDFQRSDTIRDELAAAGVEVMDGDPLGWDWKPSL
>NZ_CP019511.1|WP_077509148.1|1155333_1155783_+|TM2-domain-containing-protein
MRGQVLGVDRTSGEGQISGEDGQRYCFRPGDWSDERGPAVGVRIDFATEGNRAMRIFRLPDSDTASVAHRQPPANDRNKYVAALLAFFLGTLGIHRFYLGRNGTGVLMIVISITVVGLVITGLWALIDTVRYLVMSDAEFEHRYARRFA
>NZ_CP019511.1|WP_077509149.1|1155782_1156718_+|D-2-hydroxyacid-dehydrogenase
MKAVLPALARPLVEPHLPAGLDVHWFASAEEAEAMVADADIGWVDINRPPEWARAVAAGKRLKWLSTIYAGLDRLDTEQLRARGTRVTNGSGVNAHTVAEYAVMGALVAAKRYDQVVRIADTCEWPFDAPGKLELFETSALVIGYGTIGRLIGERLAGFGVTVTGVTRTGAPGTIGPDAWRDRLSEFDWIFLSAPATDTSRAMIGETELRAMKPSAWLINVGRGELIDQDALLEATTKRRIAGAFLDTVTPEPLPPEHPLWTAPNILHSMHLSGRSQTRMFVRAANLFVENLHAFLEGRPLQNEVDLAAGY
>NZ_CP019511.1|WP_077509150.1|1156711_1157035_-|hypothetical-protein
MDALPIDLDEDLDNEFVFDADSEDADDHEYVPDPRSLWGSEAARAMLVVLTRRLGPEFAREVSDEMAARTFSYQAGCPDDRSDGKTMEALLNDAFWDKLLAMPKPGQ

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Crispr_ID: NZ_CP019511_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019511_2

3804013-3804130

Orphan

Consensus_repeat	Method
GGGCTGGAGCGGGTAACGGGAATCGAACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019511_2

>merge|NZ_CP019511|2|3804013-3804130|CRISPRCasFinder
GGGCTGGAGCGGGTAACGGGAATCGAACCCCGCGCGTATCCCTTTAGGGCGTAGCGCCACAAGGAATCATGGGTTCGGCGGCCGGAGGGGCTTGGAGCGGGTAACGGGAATCGAACCC

>NZ_CP019511|2|2|3804013-3804130|CRISPRCasFinder
GGGCTGGAGCGGGTAACGGGAATCGAACCC	CGCGCGTATCCCTTTAGGGCGTAGCGCCACAAGGAATCATGGGTTCGGCGGCCGGAGG
GGCTTGGAGCGGGTAACGGGAATCGAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019511.1\|WP_077511279.1\|3802769_3803915_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|181629
NZ_CP019511.1\|WP_077511265.1\|3796873_3797875_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP019511.1\|WP_077511289.1\|3817263_3818649_-\|glycoside-hydrolase-family-28-protein	unknown	unknown	gnl\|CDD\|227721
NZ_CP019511.1\|WP_077511281.1\|3804209_3807110_-\|DUF4982-domain-containing-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP019511.1\|WP_077511263.1\|3796157_3796814_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NZ_CP019511.1\|WP_077511291.1\|3818648_3819764_-\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|226678
NZ_CP019511.1\|WP_077511283.1\|3808080_3809715_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP019511.1\|WP_077511285.1\|3811074_3813519_+\|DUF4982-domain-containing-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP019511.1\|WP_077512578.1\|3809842_3811153_+\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|291262
NZ_CP019511.1\|WP_077511293.1\|3819796_3820987_-\|glycosyl-hydrolase-53-family-protein	unknown	unknown	gnl\|CDD\|311610
NZ_CP019511.1\|WP_150125568.1\|3801556_3802726_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|380562
NZ_CP019511.1\|WP_077511271.1\|3798984_3799944_-\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP019511.1\|WP_077511267.1\|3797916_3798393_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225113
NZ_CP019511.1\|WP_077512580.1\|3814698_3817206_-\|glycosyl-hydrolase-115-family-protein	unknown	unknown	gnl\|CDD\|379757
NZ_CP019511.1\|WP_077512576.1\|3807121_3808078_-\|glycoside-hydrolase-family-43	unknown	unknown	gnl\|CDD\|350098
NZ_CP019511.1\|WP_077511269.1\|3798389_3798980_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP019511.1\|WP_077511273.1\|3800472_3800670_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019511.1\|WP_077511275.1\|3800666_3801503_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP019511.1\|WP_077512574.1\|3799985_3800360_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP019511.1\|WP_077511287.1\|3813515_3814688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350108

Protein	Function_ID	Function_description	E-value
NZ_CP019511.1\|WP_077511279.1\|3802769_3803915_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|181629	PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional.	0
NZ_CP019511.1\|WP_077511265.1\|3796873_3797875_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.707e-113
NZ_CP019511.1\|WP_077511289.1\|3817263_3818649_-\|glycoside-hydrolase-family-28-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	5.93237e-79
NZ_CP019511.1\|WP_077511281.1\|3804209_3807110_-\|DUF4982-domain-containing-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	7.2213e-49
NZ_CP019511.1\|WP_077511263.1\|3796157_3796814_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	3.44497e-148
NZ_CP019511.1\|WP_077511291.1\|3818648_3819764_-\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	3.88539e-115
NZ_CP019511.1\|WP_077511283.1\|3808080_3809715_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	1.21701e-73
NZ_CP019511.1\|WP_077511285.1\|3811074_3813519_+\|DUF4982-domain-containing-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	9.08221e-59
NZ_CP019511.1\|WP_077512578.1\|3809842_3811153_+\|PD40-domain-containing-protein	gnl\|CDD\|291262	pfam14583, Pectate_lyase22, Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.	2.18606e-15
NZ_CP019511.1\|WP_077511293.1\|3819796_3820987_-\|glycosyl-hydrolase-53-family-protein	gnl\|CDD\|311610	pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.	2.12093e-51
NZ_CP019511.1\|WP_150125568.1\|3801556_3802726_+\|penicillin-binding-protein-activator	gnl\|CDD\|380562	cd06339, PBP1_YraM_LppC_lipoprotein-like, periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).	2.83817e-66
NZ_CP019511.1\|WP_077511271.1\|3798984_3799944_-\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP019511.1\|WP_077511267.1\|3797916_3798393_+\|GAF-domain-containing-protein	gnl\|CDD\|225113	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms].	9.68093e-07
NZ_CP019511.1\|WP_077512580.1\|3814698_3817206_-\|glycosyl-hydrolase-115-family-protein	gnl\|CDD\|379757	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115. Glyco_hydro_115 is a family of glycoside hydrolases likely to have the activity of xylan a-1,2-glucuronidase, EC:3.2.1.131, or a-(4-O-methyl)-glucuronidase EC:3.2.1.-.	0
NZ_CP019511.1\|WP_077512576.1\|3807121_3808078_-\|glycoside-hydrolase-family-43	gnl\|CDD\|350098	cd08984, GH43-like, Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43)-like subfamily includes uncharacterized enzymes similar to those with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	3.96172e-139
NZ_CP019511.1\|WP_077511269.1\|3798389_3798980_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.05496e-42
NZ_CP019511.1\|WP_077511275.1\|3800666_3801503_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	4.9778e-109
NZ_CP019511.1\|WP_077512574.1\|3799985_3800360_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	2.05378e-29
NZ_CP019511.1\|WP_077511287.1\|3813515_3814688_+\|hypothetical-protein	gnl\|CDD\|350108	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130. Members of the glycosyl hydrolase families 32, 43, 62, 68, 117 and 130 (GH32, GH43, GH62, GH68, GH117, GH130) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases (EC 3.2.1.37), beta-xylanases (EC 3.2.1.8), alpha-L-arabinases (EC 3.2.1.99), and alpha-L-arabinofuranosidases (EC 3.2.1.55), using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 comprises sucrose-6-phosphate hydrolases, invertases (EC 3.2.1.26), inulinases (EC 3.2.1.7), levanases (EC 3.2.1.65), eukaryotic fructosyltransferases, and bacterial fructanotransferases while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Members of this clan are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) that catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. Structures of all families in the two clans manifest a funnel-shaped active site that comprises two subsites with a single route for access by ligands. Also included in this superfamily are GH117 enzymes that have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate, and GH130 that are phosphorylases and hydrolases for beta-mannosides, involved in the bacterial utilization of mannans or N-linked glycans.	2.73446e-58

>NZ_CP019511.1|WP_077511279.1|3802769_3803915_-|coproporphyrinogen-III-oxidase
MTTDTNPLALYVHWPFCVSKCPYCDFNSHIRESVDQDAWRSAMLADLAQEAAQLPGRKLGSIFFGGGTPSLMPPETVAAVIAAAERHWGFEPGIEITLEANPSSVEAARFADLAAAGVNRVSLGLQALDDEALRFLGRAHGVSEGLAALETAQSVFERVSFDLIYARPEQDLAAWEAELNRAIGFGTEHLSLYQLTIEPGTRFATLFEKGQLAAYDPDAAADLFEATRTITAASGLPAYEISNHARPGSESRHNLIYWRYGDYAGIGPGAHGRRGGYATMRHKKPENWLGAVARNGHGTQIEDALTPQERAVEALVMGLRLPEGVDVARVAALAGGEAPLDQHALARMQEQGLVTLASDRLSVTEAGMPVLEAILRELVIA
>NZ_CP019511.1|WP_150125568.1|3801556_3802726_+|penicillin-binding-protein-activator
MLRAAAVGAALFLAACASGPRIVPEAERPAPVTRPVPVAPRPIQPGLPQDVERHRIALLVPLSGPNAGVGRSLQNATQLAVLDTRSDAMRITTYDTGAAGGAAAAAQQAIADGNRLILGPLLAEEARDVAPIARRARVPVLSFSNDASVAGNGTYILGYVPAQSIERVVNYATRSGIKDFAGLIPTGLYGERASTALLRTVEDAGGRVLALETYDGRPGSMASAVAKISRSPFQAILIAGSTDGAVTAAPLIRRSATGKTARLLGTELWNTDSAIGGKAALGGAWFASVPDNYYRQYASKYRARFGAAPYRMSTLGYDAVLLTVRIARDWRPGDEFPAARLTEREGFAGLDGAFRLGRDGVAERALEVQEIRGGTTATVSPAPPNFNGN
>NZ_CP019511.1|WP_077511275.1|3800666_3801503_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MDDLVLAPGLYIVATPIGNLGDLSPRAAQILMKADVVAVEDSRVTAGLFRHLGTKGRMLPYHDHNADAVRPGLIARMASEAVALVSDAGTPLISDPGFKLVRDARAAGHIVTTIPGPCAAIAALTLAGLPTDRFLFLGFLPSKQQARAEAIAEIAAIRATLVLYESGPRLSGCLAALAEELGDREAAVAREITKRFEECVTGTLSELAARYADAPPKGEMVVVVAPPGEAAPASEADADAALAEALTRLPPAKAAGEVAKKLGLDRKALYARAMALKA
>NZ_CP019511.1|WP_077511273.1|3800472_3800670_+|hypothetical-protein
MESNESYYRRRAIQEIVAARHAITANAKARRRLLAETYVRRLSELTGSDESFLLDSNPARLQEFA
>NZ_CP019511.1|WP_077512574.1|3799985_3800360_-|YraN-family-protein
MKRPHHATNARKAAENRGREGERRAAWWLWLRGWRILDRRVRTPAGEVDIVVRKGNLVAFVEVKTRATNAELDFAIDERRLRRVAAAAEYLMPRYAGPGDDIRVDVILIAPRTLPRHIENAWMG
>NZ_CP019511.1|WP_077511271.1|3798984_3799944_-|glutathione-synthase
MSLVVAVQMDPLDAINIAGDSTFALMLSAQQRGHRLFHYAAEDLNYSDGRVWARAHPVSVQRVAGDHFRFDDPVSLDLGEETDVVLMRQDPPFDLGYITATHLLERIADRTLVVNDPASVRNAPEKVFVLDYAQFMPPTLVTRSLDEARAFLARHGEIVVKPLHGNGGKAIFKVGSDGANLSALIEVFNTAYREPHMVQAFLPSVAAGDKRIVLVDGEVAGAINRIPGEGEIRSNLAVGGSAAKTELTEREQEICAVLGPELKKRGLLFVGIDVIGGEWLTEINVTSPTGIVAIDKFNGSDTGALIWQAIERRVAERAA
>NZ_CP019511.1|WP_077511269.1|3798389_3798980_-|DedA-family-protein
MIDWLDWGYFGIFLLMVLENVIPPVPSEVIMSVGGIAAGQGKMDFVALVAVGTLGCTVGNLFWWEIGRRYGYERLKPAVERWGRWLTMDWEDVEKLRRFFDRWGGATVFVFRFMPLGRTVISIPAGLLHMPFWRFVAYTTAGSLVWNTLLVGIGYWLGASFETVDHWIAPMVTGVVVLALAVYLWRVLTWKPRAQR
>NZ_CP019511.1|WP_077511267.1|3797916_3798393_+|GAF-domain-containing-protein
MTYSYDTDIAAVQHIPDVEKMLEEVCALTGMGFAAVARVTSERWIACQVLDRIEFGMKPGDELQIKTTICDEIRQSARSVYIDHVGAHAEWRTHHTPAMYGFESYISVPILLADGSFFGTLCAIDPTERHISLADSLPLIEAMAGRIAIELDRLRALA
>NZ_CP019511.1|WP_077511265.1|3796873_3797875_+|tyrosine-recombinase-XerC
MPSLFFCRGVSLGSLRSHPPPTPPLQGGESRGHCVPVTEPALPLLYGRHLARDRRRSAHTVRAYEATAVRLVAFLRSHWGGEVTREALAGITAADLRAFLAHRRNDGLSNASAARELSAVRGFLKFTVGDAAEMPRLRGPRVKRGVPRPIAPHEAVALAETVSEEASEPWIGARDWAVLLLLYGAGLRIGEAVGLTGAVLPLGATMSVTGKRAKTRLVPLLPEVREAIEAYAKICPYGVARDVPLFRGAKGGPLPPGAIRKAVRSARTTLGLSERTTPHALRHSFATHLLGRGADLRALQELLGHASLSSTQIYTAVDAAHLLDVYRNAHPRA
>NZ_CP019511.1|WP_077511263.1|3796157_3796814_+|fructose-6-phosphate-aldolase
MKFFADTADTADIRDLADTGLLDGVTTNPSLIHKAGRDFLEVVAEICEIVPGKPVSAEVVALDYEGMMREAEIVRKIADNIAVKVPLTIDGLKTCKALTDDGTMVNVTLCFSANQALLAAKAGATFVSPFVGRHDDNGFDGMALISDIRLIYDNYDFSTEILVASVRHPIHVLEAARIGADVMTAPPSVIRQLVKHPLTDKGIEGFLADWAKTGQKIG
>NZ_CP019511.1|WP_077511281.1|3804209_3807110_-|DUF4982-domain-containing-protein
MDRRAFLATTALASALPALPARAKAVDSYNGNDLPMPAPRDGLDPRPTPEEPGRLLLDQGWRFHLGDVPMPEIKGHQASYENAKAGASHGAAGLTFDDSDWREVTLPHDWAIEAPVDRGANIAQGYRRRGVGWYRRTIRLDPALKGKFLEIDFGAIATHATIWINGTIVDRNWSGYNGIHVDLTPYARFGDELNTIAIRVDAEPMEGWWYEGAGIYRHIWLAVREPVHIVTDGVHCDPRRTADGSWSVPVEVTLGNVATADRAVTVRARLLRANGQEIAVGSDEVSVRPLVAATANIALPVADPELWSPDSPTLYPLLVTVHAGDKQVDERRINIGFRTFAFDSKTGFHLNGQPLKIKGTCNHQDHAGVGTAIPDALWDWRIRRLKALGSNAIRMSHNAPPTELLDACDRHGLLVMNENRQFNPSPDYMEQLEWLVRRDRNRPSVFMWSVFNEEPMQGSSQGYEMVRRMAAVVKALDDSRPVTAAMNDGMFTPLNVSHAVDVVGFNYQIPQYDKYHAAFPDKPLTSSEDTSAFATRGEWASDKARNVMTSYDDEGAPWGATHSAAWKAIAERPFLAGGFVWTGFDYHGEPTPFEWPSTSSFFGIMDICGFPKLAFLQHRAQWIDDEPVLALQPHWSWPGKEGQPIRVVALTNAERVVLRLNGKPVGEATVDRLKQPEFQVPYAPGKLEAIGYRGGREVSHAVIETVGAPVALRLTPDRRVMAGDGEDAQPVTVDAIDSRGRHVPLVNLPASFTIEGGEIIGLGNGNPNDHDPEKGNTRKLFNGLAQVIVRADAGRGRLTLRATAAGLKPATLTIDRIAAKPRAQVASTRPEMLLSFWARAPFTTTRPDPLAKIGTDDRYATARGRSGRLEGPSQDGRWNGYQMDFTPPARVRQRGGVLTFTELAGTAEIWIDGSKIAEKRDPAPARLDVTLPAGQGERNLVVLVETEPGKASGFGKMVVVRETVDR
>NZ_CP019511.1|WP_077512576.1|3807121_3808078_-|glycoside-hydrolase-family-43
MFAALALLAPDPVASVPLFRDPVHDGAADASTVHDARTGEWVMFYTNRRADLKLADPKDVSWVHGTTIGVARSKDGAKWRYSGTAAIPASCTGATLWAPEVQRFGDTWHMWITVVPGVFQDWNAPRFLVHLTSGDLKSWKCGERVDLGSDRVIDASVLALPQGGYRMWFNDERANKAIKYADSADLKTWTVRGAVTDTPGEGPKAFRWRGRWWLVSDAWKGLLVQHSPDGEQWTAQPGYLGGEPGTRPTDRAKVQHPDVIVSGDRAYLVYFVHQSGEPEAAKDPDWSRRTVLQIAELEEKNGVISIDRTKPVTMRLGK
>NZ_CP019511.1|WP_077511283.1|3808080_3809715_-|MFS-transporter
MASSASAPTASAHRQPRWYNYWGWGSGDMLGAGAQAVITGWLLYFFTTFCNLSAAEAGLILGLPRLLEAITCPLIGYVSDNLRHTWIGRRIGRRKIFLIATIPLLPSFALIFIAGHSFTYYLLTFIFFEFVYTMFLIPWETLAAEMTNDYRKKAKFAGARMIVAQSSAILASYLPTLIIGSLGGKDSPSTFLIMAAIFGAIFSLVVTLVVIFTWERPYTDAEKQVQSAPLDLKTALLIPVVMFRDLFSTLRIRAFRQHLSIYLGGYISQDIFNTAFPIFVVTVMMGATLIISQLLTIMYVAQLISVMIAINIVIRTGPVIAYRIAISFFGTGLLLFLAFYYLRPAGFVADLGALDGNMLSALNPASATFSPVLIFWLFVPILLAGLGRGTLNFVPWSIYNYLPDVDEAVTGQRREGIFAGVMTLVRKLAQSAAIICTGFIIDLGGYVSPKAGPGEAMQQTPEAIATITWLLILGPILVMLAGLLASWRFRLNARTHGVLMAEIDHLRAGGTEPTSPEARAVVEDLSGWKYAQLWGRNTLAAVRR
>NZ_CP019511.1|WP_077512578.1|3809842_3811153_+|PD40-domain-containing-protein
MRLGRTISQAFALGALLLAPAAMADPAAQWVDTLTGHKVIRISREADSASLYFHQNSYTPQGDKMVISVPGGISVIDLKSWEVTPLVKGKGLILLFTGRKTRTAYYQTRAGEGKPWTIHAADIDSGKTRKIAEIKEGFIGSINADETLLLGQWAETDKPLQPGAKPGDNNKFGQAQYAANWPDGRPMTYADAKEVRLNDRLEAKVPMEIFTIDVKTGARKVVTASTDWLNHIQFSPTDPQQIMYCHEGPWHKVDRIWTIRADGTGKKPIHNRTMNMEIAGHEFFSPDGKTIWYDLQTPRGEVFWLAGYDLETGKRRWYNVERNEWSVHFNQSPDHKLFSGDGGDSEMVAHAPDGKYLYLFTPKAIPDVAGIHAPGAENLIAPGTLDSEKLVDMRKHDYRLEPNMTFTPDGKWIVFRANFEGANHIYAVELAKAPVK
>NZ_CP019511.1|WP_077511285.1|3811074_3813519_+|DUF4982-domain-containing-protein
MDRVPRQLRRREPHLRRRARQGAGEVKGTLRAGLALALCLAAPAFAQPTERLSIDQDWRLSVGDKVDAMAPAFDDSGWKRVDVPHDWSIAGPFDEKARATGSGGWLPTGVAWYRKHFALPESARGRRVFVELDGVMDRAGVWINGHHVGHRPNGYSSVRYELTPFLKVEGDNVLAVRADTSAQPASRWYAGGGIYRHARLAISGDVHFDQSGIAVRPAKVTREGADVTVNASIRNMGDKAVNATLSVAIRDPGGRVVAQGESRRGGLDANWTDALEAKLRVANPRLWDTTDPALYTAQVTLTGADGKVLDRQTERFGIRDARFEAATGFWLNGRNFKLKGVAIHADGGAFGMAVPLAMYERRLRGLMALGVNAVRTAHHPFSPEFLDLCDRLGLIVMNEAFDMWTVAKNPNDYHLFFTDWSSLDARDFVKRDRNHPSVVIWSIGNEIHDTPYPLVAKSIVERQMKIFHAEDPTRPVTMALFRPNTTKDYENGLADMLDVVGQNYRENELAKAHADKPSRKIIGTENSKNRGSWLVVRDNPAYAGMFLWTGVDYLGEADRAGWPVIGNPSGLTDRSDFVKPIGWERAGWWAEKPVVKIARRVTEVIDTSELPTMVGVAMPQPRGPGALIDWSPENRAPHPEAVEVYSNAASVELFLNGRSLGSKPRPADDSARRWDVGFAPGTLRAVARDAAGKTVATDELRTAGAPAAIRLIAEAPTMGSDFDSVGFVRVEVVDAKGVVVPSAANRVRIAVEGPGKLVAYDNGSPTEHTPFAAAERPVFGGHALAMLRGTGPGTVRIRATAPGLKAGIATMVTR
>NZ_CP019511.1|WP_077511287.1|3813515_3814688_+|hypothetical-protein
MTLRLLAGAAVAVLAAVVTPPPGARSQAVEAEAVPVLGPKPFIAYFRPAPAKELSRIAWGAAEVGPRDIRNGLEDATMARWNYWDGQVLKGPDGKYRMFASRWNQALGHKAWGLSEAVWAISESPFGPYRDMGLTWPGDEAGKGHNITALRLPDGRYAVVTSETRSGDVFVSSSIDGPWRKLGSIIVDQSAFTSVKTPGDLPNTAPAKPWKASNVSLIARPGGGFAIIQRSGQILVSTNDILGPYKVMGDSIYRGLPGLPQRDMRAYEDPVIWFSGGWYHVLVNHWRERRAYHLISRDGVTGWRVQGLAYEPGADFIRYTNGVVNHWNKLERPGVLIENGHVRALTFAVVDTPKESQTGSNGHGSKVIVVPFDGVAMDRDLRDADKDPRR
>NZ_CP019511.1|WP_077512580.1|3814698_3817206_-|glycosyl-hydrolase-115-family-protein
MTEGAEARRSIISCIAILPLRRIRRHPLAGQDKGIASFLLALTLLLATPTHAQLADWIDTRPDAPGLNLAGATVITAASDADVVTLAADHLRRDLATVTGKTAGGDPIWAGTIGRNPAIDGLIATGKLDAKRLAGAWESFVIATVERPAPGVRRALVIAGSDRRGTAYGIYELSRAIGVSPWHWWADVTPLRQARLSVRPGTRRFGPPSVKYRGIFINDEDWGLTPWSATVFEPGTRGMGAKTYAKVFELLLRLKANTLWPAMHKISPAFNANPENAKLADRYGIVMGSSHAEPMLRNNVGEWTADAHDYDYGKNPDGVRAYWDERTRTNGKYDSIWTLGMRGIHDSGMQGADDMATRRKFLESIIADQRAMLARHVSRQVERVPQVFTPYKEVLDVYRAGLEIPDDVTLMWPDDNFGYIRRFPTPAERKRPGGSGIYYHLSYLGAPLSYLWLSTTPTALIAEEMGRAWDLGARAMWIVNVGDIKPAERETDYFLSLAWDAPGTRALGVEAWTRRWVAENIDAAQANEIAAVLAEHHRLNFIRRPEHLQWHLPGQKARMSPYSVAEADARLVAFDRNVASVRRIAGQIPEARRDAFFELLGYPVEAAAEANRRFFAAEAHDRLRDADLPRALARGTEARAADARIAGLTGTYDALAAGKWRGFIAVEPADGQWKSYRLTPPVLPAPSSAGPPPAVLAEPAASRDITLDLRRFTGSWRSVAGLGRNGPVLGSRTDRAVAGTAALSLPTGRWRAIVDLIPTYADGDGAPLQLVLRIDGKVYPLNITRETGNPAWAQAVLDNRISVELPEAVTAGTHRIELGAETGGILVEAIRFVPY
>NZ_CP019511.1|WP_077511289.1|3817263_3818649_-|glycoside-hydrolase-family-28-protein
MFRRDVLAAGAMLPLLAAAPAPAQGVRRKAVRVAAPFDMPAIEIPDFGAVRGFPITEYGAKPDDQRANRRAVADAIAAAYAAGGGRVVIPAGIWASGPIHLRSNIELHLEKGATLAFSPDPGDYLPAVPTSWEGIECLNYSPLIYAYDCENVAITGQGILLARLDTWAIWYARPKPHMDALVELYQMARKGVPVARRDMTRAEANLRPHFIQFNRCRHVLIEGVQIQNSPFWTIHPHLCRDVVIRGVRIEAHGHNNDGVDPEMSQNVLIEDCVFDQGDDAISVKSGRDHDGWRLHTPARNIVMRNCRVKNGHQLMAIGSELSGGIENVFVDNCHFDHQGSNAKSTIQNILFVKTNERRGGFVRNIHLSNVSATEVAGGVLSVDTDVLYQWRTLTPTYDRRLTPIEGIHVSDVRVERAKFVSEIKGQAELPVRDVTLRRVRVAQASGTPVHSEHAIGVRVEE
>NZ_CP019511.1|WP_077511291.1|3818648_3819764_-|glycoside-hydrolase-family-88-protein
MAALTHDVPRSEITSKIDLLMDNLVNIKDETGEFLLHLEDGRIIDTKGWAGWEWTHGVGLFGMWRYYEQTGDDKALAIIKQWFEDRFEEGTPTKNINTVAPFITLAYLYEQEPDPRYIPYLDTWCEWLMAKDGLPKTEEGGFQHIVYNDENPGEMWDDTLMMSVLPLAKIGLLLGRPQYVEEAKRQFLVHIKYLFDKKTGLWFHGWDFNGRHNFAEALWARGNCWVTIAIPEIIEILDLPEGDAFRTFLIDTLAAQVKTLAETQDPETGLWHTLIVDPTSYLEASATAGFAYGILKGVRKGYLPREYEQVGIKAVKGVLANIDATGELQQVSFGTAMGDTQQFYKDIRLTSMPYGQSLAICALGEFLRTYI
>NZ_CP019511.1|WP_077511293.1|3819796_3820987_-|glycosyl-hydrolase-53-family-protein
MKATRRQAIAGGAALALAPLPARAAKGARPWPYLIGADISWVPEDEFAGATYYLDGVKKDPLAIFREAGFNALKLRLFVDPAKGYSKGKPGGPWCSLEQITDFSLRIKRAGFHLSTTLHYSDTWADPQHQNKPAAWADLPFAKLVDTVHRYTADTWAALKKAGAAPDLAILGNETTFGMLWPEGRVPLTIPTGNPQTDDVHMKVTGAGGYDRFAALLKAGVSATRATLPGVPLAIHNHLGRHWPIVRHWTDSLIERGVDFDALGFSCYQQQAEGDWERTFAEFARRYPDKGFFAIEYSSRKRYLNDLVHARANGWGSYIWEPTRHQEAIFLKGGVSAGEGPKPNLLSQGINSAEAPGAAPAPPAPRKPRDHGGRYDADPTFIRLYQKMAKDYGVTQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2748033 : 2797457

Pithovirus(10.0%)

portal,tail,capsid,head,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171982606.1\|2748033_2749143_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_077510357.1\|2749350_2749530_+	hypothetical protein	NA	NA	NA	NA
WP_077510358.1\|2749630_2749930_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_077510359.1\|2750122_2750377_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_077510360.1\|2750440_2751166_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_077510361.1\|2751252_2751513_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_077510362.1\|2751747_2752947_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_077510363.1\|2752959_2756115_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_077510364.1\|2756203_2757409_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_077510365.1\|2757549_2758020_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_077510366.1\|2758070_2758742_-	HAD-IB family phosphatase	NA	NA	NA	NA
WP_077510367.1\|2758818_2759928_+	MlaE family lipid ABC transporter permease subunit	NA	NA	NA	NA
WP_077510368.1\|2759927_2760746_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	3.4e-12	28.1
WP_077510369.1\|2760753_2761716_+	MCE family protein	NA	NA	NA	NA
WP_077512356.1\|2761724_2762315_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_077510370.1\|2762342_2763221_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_077510371.1\|2763536_2764352_-	porin family protein	NA	NA	NA	NA
WP_077510372.1\|2764370_2765723_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_077510373.1\|2765725_2766724_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_077510374.1\|2766744_2767707_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_077510375.1\|2767859_2768600_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_077510376.1\|2768608_2769304_-	anti-sigma factor	NA	NA	NA	NA
WP_077510377.1\|2769296_2769854_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_150125527.1\|2769987_2770923_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171982509.1\|2771005_2771356_-	hypothetical protein	NA	NA	NA	NA
WP_077510380.1\|2771366_2772707_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_077510381.1\|2772710_2774525_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.4e-26	32.7
WP_077510382.1\|2774534_2775494_-	hypothetical protein	NA	NA	NA	NA
WP_077510383.1\|2775558_2775828_-	hypothetical protein	NA	NA	NA	NA
WP_077510384.1\|2776522_2777269_+	DUF1134 domain-containing protein	NA	NA	NA	NA
WP_077510385.1\|2777367_2779326_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_077510386.1\|2779422_2780208_-	TonB family protein	NA	NA	NA	NA
WP_077512358.1\|2780312_2781638_-	dihydroorotase	NA	NA	NA	NA
WP_077510387.1\|2781682_2782423_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_171982510.1\|2782314_2783226_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_077510389.1\|2783342_2784473_-	OmpA family protein	NA	NA	NA	NA
WP_077510390.1\|2784583_2785087_-	DUF2793 domain-containing protein	A0A2H4GY35	Pseudomonas_phage	4.8e-09	40.6
WP_077510391.1\|2785086_2787258_-	hypothetical protein	M4QNR6	Tetraselmis_viridis_virus	1.3e-47	30.2
WP_077510392.1\|2787259_2787658_-	C40 family peptidase	NA	NA	NA	NA
WP_077510393.1\|2787654_2788461_-	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	1.6e-30	35.9
WP_077510394.1\|2788457_2790710_-	DUF2460 domain-containing protein	W6ASE7	Acinetobacter_phage	7.3e-49	33.8
WP_077510395.1\|2790899_2791337_+	hypothetical protein	NA	NA	NA	NA
WP_077510396.1\|2791350_2791905_-\|tail	tail tape measure protein	D6PEW0	uncultured_phage	6.9e-09	36.2
WP_077510397.1\|2791897_2792098_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_077510398.1\|2792094_2792352_-	gene transfer agent family protein	NA	NA	NA	NA
WP_077510399.1\|2792456_2792864_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_077510400.1\|2792904_2793306_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_077510401.1\|2793302_2793509_-	hypothetical protein	NA	NA	NA	NA
WP_077510402.1\|2793505_2794060_-	hypothetical protein	NA	NA	NA	NA
WP_077510403.1\|2794224_2795283_-\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	1.1e-79	51.4
WP_077510404.1\|2795402_2795834_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_077510405.1\|2795839_2796148_-	hypothetical protein	K4I011	Acidithiobacillus_phage	1.6e-07	47.4
WP_171982511.1\|2796196_2796370_+	hypothetical protein	NA	NA	NA	NA
WP_077510406.1\|2796350_2797457_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.2e-50	37.7

DBSCAN-SWA_2

4140846 : 4147675

Catovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077511803.1\|4140846_4141977_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.7e-18	26.6
WP_077511805.1\|4142080_4142941_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.2e-69	49.5
WP_077511807.1\|4143124_4143574_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_077511809.1\|4143657_4143918_+	hypothetical protein	NA	NA	NA	NA
WP_077511811.1\|4143939_4144950_-	NAD-dependent epimerase/dehydratase family protein	M1IBX1	Acanthocystis_turfacea_Chlorella_virus	9.6e-25	27.7
WP_077511813.1\|4145200_4146004_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	7.1e-07	26.4
WP_077511815.1\|4146000_4146450_-	dUTP diphosphatase	K4JSC8	Caulobacter_phage	7.0e-36	57.9
WP_077511817.1\|4146451_4147675_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.4e-38	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019511

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection