CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019687	Paenibacillus larvae subsp. larvae strain ATCC-9545 chromosome, complete genome	4 crisprs	DEDDh,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csa3,c2c10_CAS-V-U3,cas14j,PD-DExK,cmr1gr7,cas10,cmr3gr5	2	9	19	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019687_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019687_1

245525-245753

TypeI-B,TypeI-A?

Consensus_repeat	Method
CCGTTTGATAGTAACACGAGGTGTATTGAAACAG	PILER-CR
GTTTGATAGTAACACGAGGTGTATTGAAAC	CRISPRCasFinder

3 spacers

cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NZ_CP019687_1

>merge|NZ_CP019687|1|245525-245753|PILER-CR,CRISPRCasFinder
GTTTGATAGTAACACGAGGTGTATTGAAACTGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCCGTTTGATAGTAACACGAGGTGTATTGAAACGGAAAAGTATCAGGCAGACGAATACCGAATCATTCCGTTTGATAGTAACACGAGGTGTATTGAAACAGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTATGTTTGAAAGTAACACAAGGTATATTGAACT

>NZ_CP019687|1|1|245525-245688|PILER-CR
GTTTGATAGTAACACGAGGTGTATTGAAACTGGT	GTGGGTGATTCCGTGTCCGTCCACCATTTGCC
GTTTGATAGTAACACGAGGTGTATTGAAACGGAA	AAGTATCAGGCAGACGAATACCGAATCATTCC
GTTTGATAGTAACACGAGGTGTATTGAAACAG

>NZ_CP019687|1|1|245525-245753|CRISPRCasFinder
GTTTGATAGTAACACGAGGTGTATTGAAAC	TGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCC
GTTTGATAGTAACACGAGGTGTATTGAAAC	GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC
GTTTGATAGTAACACGAGGTGTATTGAAAC	AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT
GTTTGAAAGTAACACAAGGTATATTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019687.1\|WP_096761161.1\|245034_245157_-\|transposase	unknown	unknown	unknown
NZ_CP019687.1\|WP_051428093.1\|241930_242197_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP019687.1\|WP_023484751.1\|254844_255126_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP019687.1\|WP_023484749.1\|253312_253807_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP019687.1\|WP_023484747.1\|249723_250524_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP019687.1\|WP_036656001.1\|233387_233705_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379256
NZ_CP019687.1\|WP_023484750.1\|253826_254837_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP019687.1\|WP_023482939.1\|240245_241259_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP019687.1\|WP_036658167.1\|236411_237578_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP019687.1\|WP_036658179.1\|248724_249687_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP019687.1\|WP_023483431.1\|257735_260246_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP019687.1\|WP_036658176.1\|246824_248732_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NZ_CP019687.1\|WP_158225752.1\|237762_239058_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226190
NZ_CP019687.1\|WP_023484372.1\|235152_236340_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP019687.1\|WP_023484744.1\|246099_246804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_036658181.1\|250637_253316_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019687.1\|WP_036658172.1\|241616_241868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_024095239.1\|232609_233173_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP019687.1\|WP_104932612.1\|239196_240242_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP019687.1\|WP_077584850.1\|257334_257592_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019687.1\|WP_036658179.1\|248724_249687_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.64746e-33
NZ_CP019687.1\|WP_051428093.1\|241930_242197_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.83063e-18
NZ_CP019687.1\|WP_023484749.1\|253312_253807_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.07351e-48
NZ_CP019687.1\|WP_036656001.1\|233387_233705_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.35259e-06
NZ_CP019687.1\|WP_023484747.1\|249723_250524_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.66133e-32
NZ_CP019687.1\|WP_023482939.1\|240245_241259_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.79893e-28
NZ_CP019687.1\|WP_036658167.1\|236411_237578_-\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	1.37234e-178
NZ_CP019687.1\|WP_023484750.1\|253826_254837_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.67035e-131
NZ_CP019687.1\|WP_023483431.1\|257735_260246_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	2.26115e-159
NZ_CP019687.1\|WP_023484751.1\|254844_255126_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.10639e-27
NZ_CP019687.1\|WP_158225752.1\|237762_239058_-\|hypothetical-protein	gnl\|CDD\|226190	COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	3.00914e-28
NZ_CP019687.1\|WP_023484372.1\|235152_236340_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.59863e-61
NZ_CP019687.1\|WP_036658181.1\|250637_253316_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.92885e-27
NZ_CP019687.1\|WP_024095239.1\|232609_233173_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.4175e-37
NZ_CP019687.1\|WP_104932612.1\|239196_240242_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.13023e-39

>NZ_CP019687.1|WP_096761161.1|245034_245157_-|transposase
MRRTKYSNEFKVQVVKEALETRNKAAVARRYELTSNMLHR
>NZ_CP019687.1|WP_051428093.1|241930_242197_-|helix-turn-helix-domain-containing-protein
MLKTLEKSLDLLEHFTEETPSWGVRELAKKMGLSHSIVYRILVTYKKKGFLRQNPETKKYELDLKFWGFGCLVQDQMKITEAIYPVIE
>NZ_CP019687.1|WP_036658172.1|241616_241868_+|hypothetical-protein
MLKSIYTHERLVGAGLRYAERIIRDAAAGLPMSDNEYLAIIRQRRKKAAIAKRQRKADDTEYWVKRAAAYQRVEERVRKFESK
>NZ_CP019687.1|WP_023482939.1|240245_241259_-|AraC-family-transcriptional-regulator
MSNEWPSSIQLSLVQLKTMNKQALDELIILLILRGRVHIQISGKTYQLKADDVVMIHPYENFTLRSDNGTFILKLMITRAGVEQYLKCPWNPRFSCNSAIANEGEQDTYRMLRETLTYLMLAYYRQHEGFPFEMGKYLFKLLSILTTHFQGEDQGESMIQANGVHNKRILRILHVIDQDYRSPLSLEQFARQEYISLYHLSRQFKKNVGMTFTQYVNEVRLKKAVPELLHTEHPILKIAMNNGFANVKTFNKCFKDHYGMTPSEFRSERGKEVSAQESLQAAHSSYEVINPSAALEELSKYMVKKDLNDHSNVIRKKVELMVETEHSTVLYKLNERK
>NZ_CP019687.1|WP_104932612.1|239196_240242_+|IS630-family-transposase
MTMDKHTELAKVTAAMQQTKERRMYERYQAIYLHLKGTSMKAIADILNRNRMTVSSYIHTYENGGLGALQIKHSSGAPTRLTKQQQDRLKQTVAYSVPHEVGFTAKHNWTLELIATYVEREWGHCYSLRGISKVMERLGLSYTKPTYTLAAADPKKQRHFTETTFPELKKLLNEEIDHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYETGHIVWQEDEQYTAETFLSFLQKVMATYPTGKLALVLDNARIHHAKLLRPFLEAQKNRLELVYLPPYSPQLNIVEGLWKWLKSSVINNVFYSAVSEIRLRVGQFMDEIMKHPHAIIDRLCVRL
>NZ_CP019687.1|WP_158225752.1|237762_239058_-|hypothetical-protein
MDQEVQSQLQCVYQELEFHYIRMIGFGIEHELKEKSNMLIEWPNNNRIFDFIVANKMMPMIQLKVEEVMASQSSKLKKDPILDMVCYLIDRYGRAELETWCFELVSESVKDSKSIQLAYERLYNQLKMVHPRLQVGLQILSSLDPEETERFQSFVDYAKSSQREPDFVTLTADPSEEKDSRDGENLFQYYRKYQKNLLQHVKQGFEKAGLEQPRCFITEWNTLVGQGDVLSGSFFRAALIIEILTDLSSEIQGIGFWLNIKLKEKLTRVRQDSCLSVFLYEKLKRPLFFVLQMFDRLGSKVLHIEEGCVLTLEGEEWHLLVYNACYMDPLYSIDDFLTQVRNKRIDIYLSGLPARNYQLKQYLLDKDHGGIYHEWIRLGAPKELDAEMLRYLESKILPEVQMERSFLLDELNLHASLTMNACKLYVIQPLL
>NZ_CP019687.1|WP_036658167.1|236411_237578_-|amidohydrolase
MTNWREQLPTEEVIQWRRHFHQYPELSFEEEETSNYIYDVLSTFPNLELSRPTTNSLIAKLTGSTPGKTIALRADIDALPIEEEADVEFKSTKPGIMHACGHDTHAAMLLGAAKVLSGMKDQLSGVIKFIFQPAEEVPPGGAKEIVDTGVLNDVDYVFGIHIFPKLPAGMIGTNPGAMSAAQDIFELKIQGKGSHGSTPELSIDPITIGAEIVTNLNNIVSRHVSALDNAVLSIGQFTAGEVFNVIPDAATIKGTVRTTNADIRKLMKKRIHEVIDHIVKAYNGTYELHYQNGYSAVVNNEESTDIVRKAADKIVGEQQFICPKMMGSEDFSAYTDVTKGSFFVLGGGTEEEGCGYMNHHPKFKINEDALAIGMQMHVQIALDVLGKK
>NZ_CP019687.1|WP_023484372.1|235152_236340_-|MFS-transporter
MDKSKNKNPYLLIFALMAGYSMVYMDKNLVSTAIIPLADEFNLTNSQTGLIMSLFFLGYSIMQIPSGWLADKFGAKKVLMTSLSLISLFSFFFGMGVSLIAFVMIRFFAGVGHAGYPPSCSKTIADHFPKEKRTFVQSLILSTSGIGGILAYTLGAQLIASNWKVGYFVLGMLFAVAMLCVFLFVPNDYKVPVQLNNSAPKLKFTEIIMNRNVLVLFVALLLLNFLLYGNISWLPTYLKSQFGIGIGQVGTILAINAVCTTVATMIFGGLLSKWFLGKEKAFVISTAILVSLLLVGFIFSMNLIVSTILLILISMVSVGTFTAIFTWPHKLFDRAIIGSSIGIINTGGTIGGFLAPMIMGALIDKNGGSFSSAFTFMAIAVLLCGLTTLLLQARK
>NZ_CP019687.1|WP_036656001.1|233387_233705_-|helix-turn-helix-domain-containing-protein
MKRIQRTHSAESKYKAVQMYLECGLGYKRVAKELNIPEASIRRWVKYYENEGMAGLEEKRGKSKGLNKGRPRKNPLSPEEELIRLRAENEYLKKLWALQRRGRKT
>NZ_CP019687.1|WP_024095239.1|232609_233173_-|IS3-family-transposase
MRIWLKKTYGIHVNHKRVYRLMKQMGIQAQIRKKKRYYDKKEVCVVSDNVLNRDFHATRPNEKWVTDITYIPYKQKNLYLSAICDLFNNEIIAFHLSTRNDLQLVIDTLEKARKVRKTKGVLLHSDQGYQYTSRHFSKLLKQYKMKTSMSRKGTVWITPVRRVFLGISNQSVYTYNLLNLKRHSKPL
>NZ_CP019687.1|WP_023484744.1|246099_246804_+|hypothetical-protein
MFYELKATVLLKQEVHYLHVPERIGSWISRAALNDPVLKQEHYSTGYKHIVYGNPYPREKDGIYKKDRVYVITIRSSLNETLQRIDRSLHILQEDNYFQLLALSGIQTKNPRHILELVTVTPAIVTVDGKPWVPGGNIELLLSRIHANTEKKFHSLNPDQKVRLDHYFAHGVQVENSKPIALAYKGRKLLGNKIRLFIQEDPVSQQLAHTALGSGILEKNSVLGAGFCLAKELD
>NZ_CP019687.1|WP_036658176.1|246824_248732_+|hypothetical-protein
MLKDMAESYRLAARKFPNLIFDQHMLKEGLYLRLRVDKSWEEQSEAFEDNHLIIQPKEEQHPENVDLYDWFTRRDYYSSLVAMNKPVDSKKQIHSNNPFTFYVKREVFLGEKPGKFSMQENVTRFLNMTYPDEVERKWKVLLPAGKVKNTQVIETFFMQTEYTDALHYLASDFRQKWMERITHWYANNLNALTDFLRQIPFKKYVKLYFTTDFPTSSDQLPCEQVYAYEYTLYTIPKIFNSNDYNQMIEGTIVGLPSFNISMNSKKPFLEHRTMRVQVPIRVSLEQAMLIKQTAEWLMSKPKYTTNKFAYTSDFTFEQSIEPEGTFHIFVDGKDNEVVSFENVPFPSEFNLFIYQKNILHLRDHEGNLKPDKELKSTEEVQKAISSSFFRGRMSGQFLYDEPKARSKDFTSVMVALFMQSKQAFHDWLFKGTAISLRPLFSRLTLRLLEEQLLYVEPAQQSQNKKVLDLRWLADAFNLRLCIADYLNKEGSRTMTNRITEVMTSLKQKFSQDGMSVCGNDDEFYFLTGQLAFYLKSQSETQNKTGDLLSPFLVAKRSEQLKKKLEDAYILHKHKIKLNHAKFNKAFSNIFGYKPDGHELTGDAREMFLAGLFADNWFYEKPEKKKNDDKGADYSD
>NZ_CP019687.1|WP_036658179.1|248724_249687_+|type-I-CRISPR-associated-protein-Cas7
MTKKKNRVVGLIGIVSRMANWNADFSGNPKTTSNGQLFGSDKALKYSIKRLWEEQGKKVLYIRSYKLGGGKGELEKIQPRDLAERYEYLFGEAVSKSSPEVLNRLFQCVDVMNFGATFAVKEQNIGLTGPVQIGQGFNKYEESNIEVQDILSPFRNSNEKSEDKDATSIGKKITADECHYIYPFSVNPNCYDNFVGLPGMEGFEGYSEEAYEAFKEGALIGATILNTNSKSGAENAFSLFISFKDGLPAYLPNLDPYVKVYKQEGMTVYDLSAIIPILRDVQAYIEKIELYVNPYATKVQLDYPGIETLNIFTRQEVALV
>NZ_CP019687.1|WP_023484747.1|249723_250524_+|type-I-B-CRISPR-associated-protein-Cas5
MRALRFELKGETAFFKKPDVNVYAYFTYSHIHKVALYGLFGAIIGLGGYSQQYERNHPLTSNRRKNSEIKAVFPEFYEVFRDTSVCIVPHGDRGYFAKKIQIFNNTVGYASQEVGGVLNVREQWLEHPHWTIYVAEDEGIPQPVFDRLADYILHSKAEYCPYLGKNDHPASLTQPALVELEKPTNPPLYIDSLHRSESIRYDQEGGVKGGLQSFFKEFMPVGLNDANNGYMLEPLVFTNHEIDADTLQETDWERLYLDGERTLYFI
>NZ_CP019687.1|WP_036658181.1|250637_253316_+|CRISPR-associated-helicase/endonuclease-Cas3
MTVTYSVSIRTWMVSETADLLWAHTPQKGQNAAPETLIQHSELVMQFAQQLMGCNGVNSAIERALDRLKIDSESLDTSIRERIRNYFIQAIYLHDLGKVNPAYQRVRLRNEQMGEMGKFGDSHHSLLSALLYLHIHLRELRSELSLDPYAFSPNRKLNRRMYKFLRHVLYTFAYVISRHHTCLTYVEERLGGQFTEFESKLSALHERIIQNPEYVHFYKYKKELIEETSLFNDIIADKRGRLNHLHSAFPFYILVKLLYSTLVASDFRAAYAYLEGKSPRFHYFGEDLPIHPMIKAYRNTPVYQGIEQFRKNPESTKISPINRLRSALFDETENRLLEQIQENVFYLEAPTGSGKTNMSIHLALQLLNSNQGLNKLIYIFPFNSLIEQTKETLDRIFDKPELGNYRVEVINSITPMVTKAEAEGEQKEPDIDYRAVLLQRQLLQYPVTLTSHVNFFHYLFGTGRESNLAFAHLCNSVIILDEIQSYRNDLWKEIIHFMRAYADILHIKFIIMSATLPELDLLMEHKEAEPEISTCLLVKDRNLYFRDPLFCNRVHLHFDLLKKGKIDQDVLIKQVLEVLEEQKANGKTTRLLIEFISKKSARLFYKEIRQHVGEIPVFELTGDDSHFYRKRLLEKLGKNSEGKFYLLDVIVVATQVIEAGVDIDMDVGFKDISLLDSEEQFLGRINRSCLRDDCHAYFFHMDTVRNIYRNDWRTEYDLRAEPYQHMLATKDFSGFYHLSMKRINDSRNKSDENNWEKFKRMIQDLDYRQVEEWMTLIKEKQVSLFLNYAHQTEDGSILVGEEVWNQYVDLMENRDMDYAERQVKLSQIRQTISYFTYTYSLSHGDKPGIYDRQLGSLYYVSDGTSYMETDPLTQTKKFNRALYMESERSILL
>NZ_CP019687.1|WP_023484749.1|253312_253807_+|CRISPR-associated-protein-Cas4
MKITGTVVNYYVHCRRQCWLVAHGMNFEDDSEDVRIGRVQHEIRSEGKKNTEIAIEGIKVDKLTDQYVVEVKKSDADVEATKWQTLYYLYVLRQKGMERQGRLEFIERNKQASKKMALELDIETEQELLVLLEKIEQYLQQEQPDPPVLEKKCKRCAYYAYCFV
>NZ_CP019687.1|WP_023484750.1|253826_254837_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MSKSVPSTRYIRTPGTLGREDNSLTFRSEKGIVHLPIHGLKELYLLNEISLNSKLFSFLSMAGITVHFFDYYGHFRGTFYPKEARVSGKVKLLQAKACLERRMPIAISLVYAIASNIHEVLYHYYKHGNKEIKPYLDWLKKDVPHLLEKIQDIPRLLSLEGEIWRRFFETFKTFLPDDFRMSKRVKRPPDNPLNALISFGNTILYTKTISQIYHTHLDQTISFLHEPSDRRFSLSLDLSEPFKPLIVYRTIFEVVNNRRIQVGKHFEKKYNYCILNEAGRDVFISALEERMQQVFEHKTLKRKLSYLTAIKYDAYKLKKHIVEGTPFMPFLEKDRR
>NZ_CP019687.1|WP_023484751.1|254844_255126_+|CRISPR-associated-endonuclease-Cas2
MAKNYHYVILVYDIGEKRVGKVFKICKRYLVHFQKSVFRGEITPSNLLKLRNDLKKVIDKDSDFIAIFKMTGDYVFDEEVIGVRSNNQESLLL
>NZ_CP019687.1|WP_077584850.1|257334_257592_-|hypothetical-protein
MALGIGTAVYASEAKPYSSKEMIPDMEQRYPYMDMERMPTRMEQRHPHMDMKQMCTHMEQRHPHMDMEQRRTHMEQRHPQLNYSE
>NZ_CP019687.1|WP_023483431.1|257735_260246_-|FAD-dependent-oxidoreductase
MNKKVLIVGGVAGGASAAARLRRLDEDTEIVMFEKGEYVSFANCGLPYYIGDTIQDREKLFVQTPEAMRRRFNIDVRVNSEVTGIDPHTKTIRVQSKERGVYEETYDYLILSPGAKPVRPPLPGIDSVRIHTLRNIPDTDRIKASVTEEGTRSAVVIGGGFIGVEMAENLREIGLDVTLVEAGLQILAPFDPEMAGVLSKELEEQGVRLIIENSVQSFHDKDNYIETVLANGSVLQSDIVILAIGVSPDTAFLRDSGLELGPKGHIIVNNKLETNLDGVYAVGDAVEITDFVTKQKTAIPLAGPANKQGRIAADNICGLDTIYEGSQGTSILKVFGLTGAATGSNEKTLQKLGLPYKVNYVHPNSHASYYPGAAPLTIKLIFNDKGTVLGSQIVGYDGVDKRIDDIATVIRLRGTVTDLTELELAYAPPYSSAKDPVNMAGYTAENILAGRTEVFTPGDLLKRNKETTILVDVRTEMEHRNGHIEGSLSISIDDLRSRMHELDPNKEIWVYCQVGLRGYTASRILIQHGFKVKNLTGGYKIYQMAQFKPGKVKPPVTPSRLQSETESETVYLSHRWEQQDHTSSAKQPLSFDESLDACGLCCPGPLIQVKQQMDRLQDGQVLKVTASDPGFYEDIQAWAGMCGNPLLQISKLNDGTVEAYIQKESTSAAPVEKTTSQTPIPENSTMVVFSGDLDKAIASFIIANGAASSGKKVTIFFTFWGLNIIRKSEKIPVSKSLIGKMFGAMMPRGSRKLALSKMNMMGMGAKMIRSVMKKNNVSSLEELMETALQQGVEIVACQMSMDVMGIKKEELIDGVRVGGVGYYLGKADKSGINLFI

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Crispr_ID: NZ_CP019687_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019687_2

255304-255596

TypeI-B,TypeI-A?

Consensus_repeat	Method
GTTTGACAGTAACACATGGTGTATTGAAACT	PILER-CR
GTTTGACAGTAACACATGGTGTATTGAAACT	CRISPRCasFinder
GTTTGACAGTAACACATGGTGTATTGAAACT	CRT

4 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,csa3

The CRISPR arrays of NZ_CP019687_2

>merge|NZ_CP019687|2|255304-255596|PILER-CR,CRISPRCasFinder,CRT
GTTTGACAGTAACACATGGTGTATTGAAACTATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTTGTTTGACAGTAACACATGGTGTATTGAAACTGCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAGGTTTGACAGTAACACATGGTGTATTGAAACTTCACACAGCCCTCCTCAAATTATCCGCCCTTTGGCGTTTGACAGTAACACATGGTGTATTGAAACTGGAGATGAAAGCACTTTGTGAACAAAAAGAATTGGGTTTGACAGTAACACAAGGTGTATTGAAACG

>NZ_CP019687|2|2|255304-255596|PILER-CR
GTTTGACAGTAACACATGGTGTATTGAAACT	ATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT
GTTTGACAGTAACACATGGTGTATTGAAACT	GCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG
GTTTGACAGTAACACATGGTGTATTGAAACT	TCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC
GTTTGACAGTAACACATGGTGTATTGAAACT	GGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG
GTTTGACAGTAACACAAGGTGTATTGAAACG

>NZ_CP019687|2|2|255304-255596|CRISPRCasFinder
GTTTGACAGTAACACATGGTGTATTGAAACT	ATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT
GTTTGACAGTAACACATGGTGTATTGAAACT	GCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG
GTTTGACAGTAACACATGGTGTATTGAAACT	TCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC
GTTTGACAGTAACACATGGTGTATTGAAACT	GGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG
GTTTGACAGTAACACAAGGTGTATTGAAACG

>NZ_CP019687|2|1|255304-255596|CRT
GTTTGACAGTAACACATGGTGTATTGAAACT	ATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT
GTTTGACAGTAACACATGGTGTATTGAAACT	GCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG
GTTTGACAGTAACACATGGTGTATTGAAACT	TCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC
GTTTGACAGTAACACATGGTGTATTGAAACT	GGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG
GTTTGACAGTAACACAAGGTGTATTGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019687.1\|WP_036658179.1\|248724_249687_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP019687.1\|WP_096761161.1\|245034_245157_-\|transposase	unknown	unknown	unknown
NZ_CP019687.1\|WP_023484747.1\|249723_250524_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP019687.1\|WP_051428093.1\|241930_242197_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP019687.1\|WP_023483433.1\|260784_261078_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|182138
NZ_CP019687.1\|WP_023483431.1\|257735_260246_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP019687.1\|WP_023484749.1\|253312_253807_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP019687.1\|WP_023484750.1\|253826_254837_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP019687.1\|WP_152532860.1\|263918_264368_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP019687.1\|WP_036658176.1\|246824_248732_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NZ_CP019687.1\|WP_051428095.1\|265859_266447_-\|flavoprotein	unknown	unknown	gnl\|CDD\|376786
NZ_CP019687.1\|WP_036658199.1\|266424_267795_-\|SPASM-domain-containing-protein	unknown	unknown	gnl\|CDD\|213947
NZ_CP019687.1\|WP_023484744.1\|246099_246804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_036658181.1\|250637_253316_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019687.1\|WP_036658196.1\|264601_265888_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP019687.1\|WP_023483434.1\|261698_262031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_036658190.1\|261110_261380_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225215
NZ_CP019687.1\|WP_023483432.1\|260242_260533_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP019687.1\|WP_023484751.1\|254844_255126_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP019687.1\|WP_077584850.1\|257334_257592_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019687.1\|WP_036658179.1\|248724_249687_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.64746e-33
NZ_CP019687.1\|WP_051428093.1\|241930_242197_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.83063e-18
NZ_CP019687.1\|WP_023484747.1\|249723_250524_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.66133e-32
NZ_CP019687.1\|WP_023483433.1\|260784_261078_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.71817e-31
NZ_CP019687.1\|WP_023483431.1\|257735_260246_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	2.26115e-159
NZ_CP019687.1\|WP_023484749.1\|253312_253807_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.07351e-48
NZ_CP019687.1\|WP_023484750.1\|253826_254837_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.67035e-131
NZ_CP019687.1\|WP_152532860.1\|263918_264368_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.52894e-07
NZ_CP019687.1\|WP_036658199.1\|266424_267795_-\|SPASM-domain-containing-protein	gnl\|CDD\|213947	TIGR04334, rSAM_Clo7bot, radical SAM/SPASM domain Clo7bot peptide maturase. In multiple strains of Clostridium botulinum, this single radical SAM domain protein occurs next to a tandem array of seven homologous Cys-rich small peptides (see TIGR04333). Because this radical SAM enzyme contains the SPASM domain, associated with peptide modification, it is proposed to modify all seven C. botulinum targets, hence the name Clo7bot for this system. Suggested gene symbol is ctpM (Clostridial Tandem Peptide Maturase). [Protein fate, Protein modification and repair].	5.09337e-45
NZ_CP019687.1\|WP_036658181.1\|250637_253316_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.92885e-27
NZ_CP019687.1\|WP_036658196.1\|264601_265888_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.6113e-60
NZ_CP019687.1\|WP_051428095.1\|265859_266447_-\|flavoprotein	gnl\|CDD\|376786	pfam02441, Flavoprotein, Flavoprotein. This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyzes the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-).	3.82801e-34
NZ_CP019687.1\|WP_036658190.1\|261110_261380_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.40855e-22
NZ_CP019687.1\|WP_023483432.1\|260242_260533_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	9.84683e-15
NZ_CP019687.1\|WP_023484751.1\|254844_255126_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.10639e-27

>NZ_CP019687.1|WP_023484751.1|254844_255126_+|CRISPR-associated-endonuclease-Cas2
MAKNYHYVILVYDIGEKRVGKVFKICKRYLVHFQKSVFRGEITPSNLLKLRNDLKKVIDKDSDFIAIFKMTGDYVFDEEVIGVRSNNQESLLL
>NZ_CP019687.1|WP_023484750.1|253826_254837_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MSKSVPSTRYIRTPGTLGREDNSLTFRSEKGIVHLPIHGLKELYLLNEISLNSKLFSFLSMAGITVHFFDYYGHFRGTFYPKEARVSGKVKLLQAKACLERRMPIAISLVYAIASNIHEVLYHYYKHGNKEIKPYLDWLKKDVPHLLEKIQDIPRLLSLEGEIWRRFFETFKTFLPDDFRMSKRVKRPPDNPLNALISFGNTILYTKTISQIYHTHLDQTISFLHEPSDRRFSLSLDLSEPFKPLIVYRTIFEVVNNRRIQVGKHFEKKYNYCILNEAGRDVFISALEERMQQVFEHKTLKRKLSYLTAIKYDAYKLKKHIVEGTPFMPFLEKDRR
>NZ_CP019687.1|WP_023484749.1|253312_253807_+|CRISPR-associated-protein-Cas4
MKITGTVVNYYVHCRRQCWLVAHGMNFEDDSEDVRIGRVQHEIRSEGKKNTEIAIEGIKVDKLTDQYVVEVKKSDADVEATKWQTLYYLYVLRQKGMERQGRLEFIERNKQASKKMALELDIETEQELLVLLEKIEQYLQQEQPDPPVLEKKCKRCAYYAYCFV
>NZ_CP019687.1|WP_036658181.1|250637_253316_+|CRISPR-associated-helicase/endonuclease-Cas3
MTVTYSVSIRTWMVSETADLLWAHTPQKGQNAAPETLIQHSELVMQFAQQLMGCNGVNSAIERALDRLKIDSESLDTSIRERIRNYFIQAIYLHDLGKVNPAYQRVRLRNEQMGEMGKFGDSHHSLLSALLYLHIHLRELRSELSLDPYAFSPNRKLNRRMYKFLRHVLYTFAYVISRHHTCLTYVEERLGGQFTEFESKLSALHERIIQNPEYVHFYKYKKELIEETSLFNDIIADKRGRLNHLHSAFPFYILVKLLYSTLVASDFRAAYAYLEGKSPRFHYFGEDLPIHPMIKAYRNTPVYQGIEQFRKNPESTKISPINRLRSALFDETENRLLEQIQENVFYLEAPTGSGKTNMSIHLALQLLNSNQGLNKLIYIFPFNSLIEQTKETLDRIFDKPELGNYRVEVINSITPMVTKAEAEGEQKEPDIDYRAVLLQRQLLQYPVTLTSHVNFFHYLFGTGRESNLAFAHLCNSVIILDEIQSYRNDLWKEIIHFMRAYADILHIKFIIMSATLPELDLLMEHKEAEPEISTCLLVKDRNLYFRDPLFCNRVHLHFDLLKKGKIDQDVLIKQVLEVLEEQKANGKTTRLLIEFISKKSARLFYKEIRQHVGEIPVFELTGDDSHFYRKRLLEKLGKNSEGKFYLLDVIVVATQVIEAGVDIDMDVGFKDISLLDSEEQFLGRINRSCLRDDCHAYFFHMDTVRNIYRNDWRTEYDLRAEPYQHMLATKDFSGFYHLSMKRINDSRNKSDENNWEKFKRMIQDLDYRQVEEWMTLIKEKQVSLFLNYAHQTEDGSILVGEEVWNQYVDLMENRDMDYAERQVKLSQIRQTISYFTYTYSLSHGDKPGIYDRQLGSLYYVSDGTSYMETDPLTQTKKFNRALYMESERSILL
>NZ_CP019687.1|WP_023484747.1|249723_250524_+|type-I-B-CRISPR-associated-protein-Cas5
MRALRFELKGETAFFKKPDVNVYAYFTYSHIHKVALYGLFGAIIGLGGYSQQYERNHPLTSNRRKNSEIKAVFPEFYEVFRDTSVCIVPHGDRGYFAKKIQIFNNTVGYASQEVGGVLNVREQWLEHPHWTIYVAEDEGIPQPVFDRLADYILHSKAEYCPYLGKNDHPASLTQPALVELEKPTNPPLYIDSLHRSESIRYDQEGGVKGGLQSFFKEFMPVGLNDANNGYMLEPLVFTNHEIDADTLQETDWERLYLDGERTLYFI
>NZ_CP019687.1|WP_036658179.1|248724_249687_+|type-I-CRISPR-associated-protein-Cas7
MTKKKNRVVGLIGIVSRMANWNADFSGNPKTTSNGQLFGSDKALKYSIKRLWEEQGKKVLYIRSYKLGGGKGELEKIQPRDLAERYEYLFGEAVSKSSPEVLNRLFQCVDVMNFGATFAVKEQNIGLTGPVQIGQGFNKYEESNIEVQDILSPFRNSNEKSEDKDATSIGKKITADECHYIYPFSVNPNCYDNFVGLPGMEGFEGYSEEAYEAFKEGALIGATILNTNSKSGAENAFSLFISFKDGLPAYLPNLDPYVKVYKQEGMTVYDLSAIIPILRDVQAYIEKIELYVNPYATKVQLDYPGIETLNIFTRQEVALV
>NZ_CP019687.1|WP_036658176.1|246824_248732_+|hypothetical-protein
MLKDMAESYRLAARKFPNLIFDQHMLKEGLYLRLRVDKSWEEQSEAFEDNHLIIQPKEEQHPENVDLYDWFTRRDYYSSLVAMNKPVDSKKQIHSNNPFTFYVKREVFLGEKPGKFSMQENVTRFLNMTYPDEVERKWKVLLPAGKVKNTQVIETFFMQTEYTDALHYLASDFRQKWMERITHWYANNLNALTDFLRQIPFKKYVKLYFTTDFPTSSDQLPCEQVYAYEYTLYTIPKIFNSNDYNQMIEGTIVGLPSFNISMNSKKPFLEHRTMRVQVPIRVSLEQAMLIKQTAEWLMSKPKYTTNKFAYTSDFTFEQSIEPEGTFHIFVDGKDNEVVSFENVPFPSEFNLFIYQKNILHLRDHEGNLKPDKELKSTEEVQKAISSSFFRGRMSGQFLYDEPKARSKDFTSVMVALFMQSKQAFHDWLFKGTAISLRPLFSRLTLRLLEEQLLYVEPAQQSQNKKVLDLRWLADAFNLRLCIADYLNKEGSRTMTNRITEVMTSLKQKFSQDGMSVCGNDDEFYFLTGQLAFYLKSQSETQNKTGDLLSPFLVAKRSEQLKKKLEDAYILHKHKIKLNHAKFNKAFSNIFGYKPDGHELTGDAREMFLAGLFADNWFYEKPEKKKNDDKGADYSD
>NZ_CP019687.1|WP_023484744.1|246099_246804_+|hypothetical-protein
MFYELKATVLLKQEVHYLHVPERIGSWISRAALNDPVLKQEHYSTGYKHIVYGNPYPREKDGIYKKDRVYVITIRSSLNETLQRIDRSLHILQEDNYFQLLALSGIQTKNPRHILELVTVTPAIVTVDGKPWVPGGNIELLLSRIHANTEKKFHSLNPDQKVRLDHYFAHGVQVENSKPIALAYKGRKLLGNKIRLFIQEDPVSQQLAHTALGSGILEKNSVLGAGFCLAKELD
>NZ_CP019687.1|WP_096761161.1|245034_245157_-|transposase
MRRTKYSNEFKVQVVKEALETRNKAAVARRYELTSNMLHR
>NZ_CP019687.1|WP_051428093.1|241930_242197_-|helix-turn-helix-domain-containing-protein
MLKTLEKSLDLLEHFTEETPSWGVRELAKKMGLSHSIVYRILVTYKKKGFLRQNPETKKYELDLKFWGFGCLVQDQMKITEAIYPVIE
>NZ_CP019687.1|WP_077584850.1|257334_257592_-|hypothetical-protein
MALGIGTAVYASEAKPYSSKEMIPDMEQRYPYMDMERMPTRMEQRHPHMDMKQMCTHMEQRHPHMDMEQRRTHMEQRHPQLNYSE
>NZ_CP019687.1|WP_023483431.1|257735_260246_-|FAD-dependent-oxidoreductase
MNKKVLIVGGVAGGASAAARLRRLDEDTEIVMFEKGEYVSFANCGLPYYIGDTIQDREKLFVQTPEAMRRRFNIDVRVNSEVTGIDPHTKTIRVQSKERGVYEETYDYLILSPGAKPVRPPLPGIDSVRIHTLRNIPDTDRIKASVTEEGTRSAVVIGGGFIGVEMAENLREIGLDVTLVEAGLQILAPFDPEMAGVLSKELEEQGVRLIIENSVQSFHDKDNYIETVLANGSVLQSDIVILAIGVSPDTAFLRDSGLELGPKGHIIVNNKLETNLDGVYAVGDAVEITDFVTKQKTAIPLAGPANKQGRIAADNICGLDTIYEGSQGTSILKVFGLTGAATGSNEKTLQKLGLPYKVNYVHPNSHASYYPGAAPLTIKLIFNDKGTVLGSQIVGYDGVDKRIDDIATVIRLRGTVTDLTELELAYAPPYSSAKDPVNMAGYTAENILAGRTEVFTPGDLLKRNKETTILVDVRTEMEHRNGHIEGSLSISIDDLRSRMHELDPNKEIWVYCQVGLRGYTASRILIQHGFKVKNLTGGYKIYQMAQFKPGKVKPPVTPSRLQSETESETVYLSHRWEQQDHTSSAKQPLSFDESLDACGLCCPGPLIQVKQQMDRLQDGQVLKVTASDPGFYEDIQAWAGMCGNPLLQISKLNDGTVEAYIQKESTSAAPVEKTTSQTPIPENSTMVVFSGDLDKAIASFIIANGAASSGKKVTIFFTFWGLNIIRKSEKIPVSKSLIGKMFGAMMPRGSRKLALSKMNMMGMGAKMIRSVMKKNNVSSLEELMETALQQGVEIVACQMSMDVMGIKKEELIDGVRVGGVGYYLGKADKSGINLFI
>NZ_CP019687.1|WP_023483432.1|260242_260533_-|winged-helix-turn-helix-transcriptional-regulator
MNNDFERYNEAAELLKALAHPVRLCIVKGLMEKGSCNVSFMQNCLGLPQSTVSQHLQKLRALGIVAAHRTGLEINYSVENEKVKQLVQIFFREESS
>NZ_CP019687.1|WP_023483433.1|260784_261078_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MDFNPQIGHEQAGRRPGLVVSPTSFNRVTGFIVVCPITRTVRNYPYEVPLPSDLMTEGVVLAHQVKSLDWKARKAEVREKVPQEIIDDVLDLIHTFL
>NZ_CP019687.1|WP_036658190.1|261110_261380_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MGKDRERMSVMSTIVSKWGNSLAIRIPSNLAESLNIKEGSEVELSIMDSTLTIKPKKRKPTLEELLAKITDGNHHEEIDFGKPEGNEVW
>NZ_CP019687.1|WP_023483434.1|261698_262031_+|hypothetical-protein
MKILSKALLSSIAAFGLLAGSVSTQTPGQQAITSQQAGVKSTIVNPLIKLKVGWSTWIGMPGSKVVLVSGEGVVSLDQYGKVVGLSPGNATVYNYAADGNLYINHIQVTY
>NZ_CP019687.1|WP_152532860.1|263918_264368_-|transposase
MAYKYGISKSTLVKWPRRYNVYGLEGLEVRTKNRSYSAELKLQAVLDYLKGELSQYDIIDKYKIASRTQLSNWVKKYNSHSSLKAYQGGVKDMTKGRKTTWQERLEIVQYCLTHNQDYRKTAEQYQASYQQVYQVKKYQDGGQERWPRT
>NZ_CP019687.1|WP_036658196.1|264601_265888_-|MFS-transporter
MNPEPKSATETTLFRNRNYRFLLVADILSSPGYYIYIIAVEWLMLTLYDSRSYLGLMLFSSSFARLLFTIYGGIIADRLNRKLIILVTQWGEAFIIAAILLCYIADVISPVFLIVASFLFGILSAFASPAYESIITSIVEKSSLQRGNALLRLANQYSLIIGPLISSTLIVTIGFVGVFSFSLLTILASSLLVSFIQVPDQQFSEHSTSQWDDFKASVTHIRKHQVLPILMVLGFVMNFFVAGPIGVVIPILAKDILEGNAFVLGMLEVSLGLGFILGSITVSIRKPFNRPGLAILYSLLVMVLAYSALGFVQQLILSMFALLLVSFFIQLMNIPLFTYIQTNTEANMVGKVMSLFISVASGLTPLSFAMISYLLHLHIDIQLIIRIFGAFLIVITAGTFLISPIRNLTYENSPQGAKQPEKDQGVSS
>NZ_CP019687.1|WP_051428095.1|265859_266447_-|flavoprotein
MMTKTYNKILIGITGAIGAINVYNYFFVLKNEFQCQIETVITDNAKQFISKMALTNVFDYVYDELFTSSMKSPHVNIVQNVDLFLILPASANFLSKMAHGVGDDLLSCCVLNYAKPIYIAPNMNEIMWNNPRIQQNIITLKEDGHIFVNVESFGYKTAQGSYIKSDASLPQPQELVQYILNRGAKADESRAEIRN
>NZ_CP019687.1|WP_036658199.1|266424_267795_-|SPASM-domain-containing-protein
MVVRGKISLKNKNKLKPSRFNFHVEDNNLLKVYNSYRGDIVAFTGKEVPLVKAILRRKEIDLSDNKEKELRLIDFLFKKGYLVNLEINEFQLGTSQKYNMLSSERTLQLILLTNEDCNFRCTYCYEDFTKSEMKTDVQLGIIQFLEKNISRYRQLFINWFGGEPLKSFDIIKNLSYKIMGICERYNVHYYAGITTNGYLLDKDTFEQLLDLNVVSYQITLDGTAETHNTYRAGRFGEKTFDKILSNLIAMKQFSSNFTVVLRSNINNEVSAVMNDYISLVSNIFVEDPRFILHFIPIQNLKGEQKADIHLCDTKDLFPLYNKAKKEGFEFNFYKQYLRPGGSQCYASNPSSYVIGSDGMIYKCTVAFNNPYNHVGDLLENGQMILDQERWSLWITGGVNEDPMCTKCFFRPSCQGNACPLERIESNKTPCPPIKKSLKNYVKLVDGDYDYDDQNIQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP019687_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019687_3

1191583-1191948

Orphan

I-C

Consensus_repeat	Method
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	CRISPRCasFinder
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	CRT
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP019687_3

>merge|NZ_CP019687|3|1191583-1191948|CRISPRCasFinder,CRT,PILER-CR
TTTGCAATTCAACTATTCGCGTAGGATGCGACATAGCCGCGCTATATGGCGGTCGGCTTAATTGATTTCAATCCACGCATCCGCGTAGGATGCGACATTGAAAACCAAAATAACCTTTCGGAAATTATCCATTTCAATCCACGCATCCGCGTAGGATGCGACGGGAATAGCAATCAATTCGGTTTGTATTTTGATGATGATTTCAATCCACGCATCCGCGTAGGATGCGACATTTACATCTGCTTCAGTTGCATATTTGTAATTGTTATTTCAATCCACGCATCCGCGTAGGATGCGACAGGAATTGTTTCCTGAGGGTGTTTCAGATGATGTATTTCAATCCACGCATCCGCGTAGGATGCGACA

>NZ_CP019687|3|3|1191583-1191947|CRISPRCasFinder
TTTGCAATTCAACTATTCGCGTAGGATGCGAC	ATAGCCGCGCTATATGGCGGTCGGCTTAATTG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	ATTGAAAACCAAAATAACCTTTCGGAAATTATCC
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	GGGAATAGCAATCAATTCGGTTTGTATTTTGATGATG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	ATTTACATCTGCTTCAGTTGCATATTTGTAATTGTT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	AGGAATTGTTTCCTGAGGGTGTTTCAGATGATGT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC

>NZ_CP019687|3|2|1191583-1191948|CRT
TTTGCAATTCAACTATTCGCGTAGGATGCGACA	TAGCCGCGCTATATGGCGGTCGGCTTAATTG
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	TTGAAAACCAAAATAACCTTTCGGAAATTATCC
ATTTCAATCCACGCATCCGCGTAGGATGCGACG	GGAATAGCAATCAATTCGGTTTGTATTTTGATGATG
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	TTTACATCTGCTTCAGTTGCATATTTGTAATTGTT
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	GGAATTGTTTCCTGAGGGTGTTTCAGATGATGT
ATTTCAATCCACGCATCCGCGTAGGATGCGACA

>NZ_CP019687|3|3|1191647-1191948|PILER-CR
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	TTGAAAACCAAAATAACCTTTCGGAAATTATCC
ATTTCAATCCACGCATCCGCGTAGGATGCGACG	GGAATAGCAATCAATTCGGTTTGTATTTTGATGATG
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	TTTACATCTGCTTCAGTTGCATATTTGTAATTGTT
ATTTCAATCCACGCATCCGCGTAGGATGCGACA	GGAATTGTTTCCTGAGGGTGTTTCAGATGATGT
ATTTCAATCCACGCATCCGCGTAGGATGCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019687.1\|WP_036654315.1\|1196036_1196222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_023483488.1\|1192452_1193085_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274926
NZ_CP019687.1\|WP_051427842.1\|1197782_1198157_-\|cyanase	unknown	unknown	gnl\|CDD\|235079
NZ_CP019687.1\|WP_077584960.1\|1195449_1196049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_155116373.1\|1186186_1186339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_077584959.1\|1191064_1191460_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP019687.1\|WP_036654311.1\|1195226_1195421_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_077584961.1\|1196433_1196826_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|131952
NZ_CP019687.1\|WP_144029621.1\|1196961_1197258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274345
NZ_CP019687.1\|WP_024093999.1\|1189901_1190201_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225511
NZ_CP019687.1\|WP_024093998.1\|1190258_1190579_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP019687.1\|WP_077584955.1\|1185542_1185770_+\|DUF3951-domain-containing-protein	unknown	unknown	gnl\|CDD\|315734
NZ_CP019687.1\|WP_023484253.1\|1182049_1184998_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
NZ_CP019687.1\|WP_077584956.1\|1186596_1187049_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP019687.1\|WP_036656690.1\|1188415_1188772_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198398
NZ_CP019687.1\|WP_024093991.1\|1197390_1197534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP019687.1\|WP_023483541.1\|1198743_1199490_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP019687.1\|WP_023483542.1\|1198276_1198699_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP019687.1\|WP_036654309.1\|1189067_1189811_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP019687.1\|WP_024093997.1\|1190665_1190944_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098

Protein	Function_ID	Function_description	E-value
NZ_CP019687.1\|WP_023483488.1\|1192452_1193085_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	8.34787e-98
NZ_CP019687.1\|WP_051427842.1\|1197782_1198157_-\|cyanase	gnl\|CDD\|235079	PRK02866, PRK02866, cyanate hydratase; Validated.	3.04059e-74
NZ_CP019687.1\|WP_077584959.1\|1191064_1191460_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.33465e-20
NZ_CP019687.1\|WP_144029621.1\|1196961_1197258_-\|hypothetical-protein	gnl\|CDD\|274345	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat. [Cellular processes, Sporulation and germination].	1.5762e-06
NZ_CP019687.1\|WP_077584961.1\|1196433_1196826_-\|phosphotransferase	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	1.68758e-06
NZ_CP019687.1\|WP_024093999.1\|1189901_1190201_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000117275
NZ_CP019687.1\|WP_024093998.1\|1190258_1190579_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.50062e-07
NZ_CP019687.1\|WP_077584955.1\|1185542_1185770_+\|DUF3951-domain-containing-protein	gnl\|CDD\|315734	pfam13131, DUF3951, Protein of unknown function (DUF3951). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 56 and 71 amino acids in length. There is a conserved YTP sequence motif.	8.43279e-09
NZ_CP019687.1\|WP_023484253.1\|1182049_1184998_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
NZ_CP019687.1\|WP_077584956.1\|1186596_1187049_-\|FUSC-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.6152e-13
NZ_CP019687.1\|WP_036656690.1\|1188415_1188772_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198398	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria. The family includes some bacterial LuxR and ArsR family transcriptional regulators. The a C-terminal conserved domain shows sequence similarity to the N-terminal catalytic GIY-YIG domains of intron-encoded homing endonucleases. Besides, they have an N-terminally fused transcriptional regulators module, comprising the winged helix-turn-helix (wHTH) domain and uncharacterized domain DUF2087. At this point, they are distinct from GIY-YIG homing endonucleases, which typically contain a variety of C-terminally fused nuclease-associated modular DNA-binding domains (NUMODs). Moreover, some key residues relevant to catalysis in GIY-YIG endonucleases are mutanted or absent in this family, which suggests that members in this family might lose the catalytic function that GIY-YIG endonucleases possess. This family also includes many uncharacterized hypothetical proteins that consist of a standalone GIY-YIG like domain.	2.06878e-40
NZ_CP019687.1\|WP_024093991.1\|1197390_1197534_+\|hypothetical-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	0.000424963
NZ_CP019687.1\|WP_023483541.1\|1198743_1199490_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.66551e-144
NZ_CP019687.1\|WP_023483542.1\|1198276_1198699_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	3.01646e-33
NZ_CP019687.1\|WP_036654309.1\|1189067_1189811_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.42012e-40
NZ_CP019687.1\|WP_024093997.1\|1190665_1190944_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.11078e-05

>NZ_CP019687.1|WP_077584959.1|1191064_1191460_+|IS3-family-transposase
MAIRLLSYVFGHSNNNGLVFQTVNKAIQAASGSRPMLHSDRGFQYTSQKFKKILEKGNIMQSMSQVGRCIDNGPMESFWGALKCEKYYLHTYHTFEDLERDIEAYIYFYNYERLQAKLNGLSPMEFRIKAA
>NZ_CP019687.1|WP_024093997.1|1190665_1190944_+|IS3-family-transposase
MEIPRSSYYKWLKRKPSVREQENRMLTEAMMALYEKVGGIYGYHRLTLHICRETQQRINHKCIQRLMKLKRHSVGDSQKSKEICIVNSSARG
>NZ_CP019687.1|WP_024093998.1|1190258_1190579_+|helix-turn-helix-domain-containing-protein
MTKGRKTTWQERLEIVQYCLTHNQDYRKTAEQYQASCQQVYQWVKKYQDGGQEALQDGRGRKKAEEELTDADRQKLAMKKMEAEIERLRAENALLKKLEELERRGR
>NZ_CP019687.1|WP_024093999.1|1189901_1190201_+|helix-turn-helix-domain-containing-protein
MSKVQYNAKEKFAMIEEIESGELGLMGVAYKYGISKSTLVKWRRRYDVYGLEGLEVRTKNRSYSAELKLQAVLDYLKGELSQCDIIHKYKIASRTQLSN
>NZ_CP019687.1|WP_036654309.1|1189067_1189811_+|MerR-family-transcriptional-regulator
MLYTVKEVAALSQVTVKTLHHYHKIELLLPYEISEAGYRLYGVKELERLQQILFYRELDFPLEKIKQLLEGESRLGILSDQKDLLLARKQRLDRLIQTLDESIESVVKGEVMDQSSMFKGFESEQKWKNALAEHKEYLKETYGLDILEDRPIDVKDMNEKASRADRFMEEMAKALKAGMKFDDETVRGLIREHIDFLNQNVHATSAEDFALQARFFLDDDFHRNIMESRQTGLAYYLFTAAESYAVK
>NZ_CP019687.1|WP_036656690.1|1188415_1188772_+|GIY-YIG-nuclease-family-protein
MSRINKEHRAELQQAYKELKKRAAVYQIRNTMNGKLFIDSTLNLKTLNGEKFMLNMGTHNNRSLQQEWKEFGEDAFVFEVLEELKKTENEYVDIKDELKKLKDKWLGQVQPYGEKGYN
>NZ_CP019687.1|WP_077584956.1|1186596_1187049_-|FUSC-family-protein
MHKTATIYQSFITFLHKIGFSMLVFKTALAAAISWWIALLFTPEYPPYLAPIAAVLIVNITVASTLIKAFYRIVGVIYGVLINLLIGSLVSNSTIAIFLSVLLGTALTSAFRLNNQIVSQVGVSAVMALAFLKTPYYGWGGLRRRFLAVL
>NZ_CP019687.1|WP_155116373.1|1186186_1186339_-|hypothetical-protein
MEPLNDLLGQLAKEPNIELRFTPNLPPLKERIISSNLDFSIIRFRHAKPL
>NZ_CP019687.1|WP_077584955.1|1185542_1185770_+|DUF3951-domain-containing-protein
MKGLKIWKLPCCFLFAFALIVLIAVITFKIIKNKELPSNSYTPFDYITGQSNVEFHEEKEEKEEDMAKDDNKGKT
>NZ_CP019687.1|WP_023484253.1|1182049_1184998_-|formate-dehydrogenase-subunit-alpha
METVKFQLNGEEHETAEGTRILDFLLELGKDHPHICYSPITGPIQSCDTCMCEADGKLVRACSTTLKPGMRIRTSSEKAQIAQKEAMDRILENHMLYCTVCDNNNGNCKVHNTTEMLGIEHQSRPFRPKGYKKDMSNPFYRYDPDQCILCGRCVEACQDLQVNETLSIDWEREIPRVIWDDDKAINESSCVSCGHCVTVCPCNALMEKTMLGEAGFLTGMSEGLMNPMIDLVKAVEPGYSGIFAVSEMEAALRETRTKKTKTVCTFCGVGCSFEVWTKDRVILKIEPNEQAPVNSISTCVKGKFGWDFVNSDQRLTAPLIRRGDQFAPAGWDEAIDYIAERLGRIKEEYGGNALSFVASSKTTNEDTYLMQKLARQVFETNNVDNCSRYCQSPASDGLQNTVGYGGDSATIRDIEQAGLVIIVGANSAEAHPVLATRVKRAHKLRGQKLIVADLRKHEMAERADLFIRPKQGTDFVWLTALAKYILDQGWHDEAFLRERVNNREEYEQMIEKYTISYAEKITGIPGEQLIQTAKMICEASGTCILWGMGVTQNVGGSHTSAAISNLLLVTGNYGRTGTGAYPLRGHNNVQGACDMGALPQWLPGYQKLADDEVRQKFEKAYGVRISPEPGLTNVGMVEAIHEGRLKGMYLMGEDMVWVDSNSNNVQEALVKLDFFVVQDVFLTKTAQFADVVLPACPSLEKDGTFTNTERRIQRLYRALEPLGDSKPDWWIIQQLANRMGANWAYKHPGDVMDEIASLVPTFAGVRYSRLEHWNSQHWPVREDGTDEPLLYTQRFNFPDGKARLSTAEYIPPVGYPSDFDLIVNNGRLLEHFHETNLTGKSKGINYKLPSVFVEISSELAGKRGLEDGSLVRLVSPYGSIKLHVLVTDRVEGNHIYVPMHSHSHENAINILSGNAVDMKTSTPAYKQTRARMEIIQKEGISPLPRHNHRFARRRPQTGVQVERKWERQDYEPIADVNVNGGQ
>NZ_CP019687.1|WP_023483488.1|1192452_1193085_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MNLCFQDVLTEEKQVRELIGNSSEVAKHKSIHHIDSYCREFIAKTPLIFISTSDKEGNCDVSPRGDAAGFVLVLDDKHLVIPERPGNRRIDSVRNILSSPRIGLIFLIPGLEETLRINGRACITKNPELMNRMQAREKTPLLGIGVEVEECYVHCAKAFKRSQTWEAGSWLNQDLLPKVSKMLVAHVNREDFTEEIIAKGLKESYEKRLY
>NZ_CP019687.1|WP_036654311.1|1195226_1195421_-|hypothetical-protein
MFELIASGISAENAAQVINAVFNGLSIVSALSLCAGIAGGAAWFLSNGIGYMIKWAGKKTIIDW
>NZ_CP019687.1|WP_077584960.1|1195449_1196049_-|hypothetical-protein
MIGLIIIFCSIFFYIVSAIPVIATYFVFGESFAIILKEKGLIAAISTYPHFLPETLSTMLLLSIAFVISAKMLKIVFKNESILKNKKKILKTYLVSNVLLIFAAFIEALKIGDRKLINEIYFVSIGSKLIFSTVAVLTLISATSWNFIFASVGAIILYIIYFFANKQNTISERTRKVIARGDECLRIYSYGSRGFMPCL
>NZ_CP019687.1|WP_036654315.1|1196036_1196222_-|hypothetical-protein
MKAYISVGHKAAIFLIGLSILVGFIYGFVFEDTDQIKTIGFDGLNVLETFFQIFPIILSLV
>NZ_CP019687.1|WP_077584961.1|1196433_1196826_-|phosphotransferase
MEEEINHPALIHGDVTLPNIIIHPSRPFLIDWDLLRMGSTYYETAKTLLNTTNFDPANISALIKGYEQIKGLTPAERLLISAFFLLPVEAWRSARRIASGRRSPVFHILSRTWEKNLVPYDGWMNGHGNN
>NZ_CP019687.1|WP_144029621.1|1196961_1197258_-|hypothetical-protein
MTTREQITRLSSYIQKLKESGYPHLPNWLVTKSGQYWVSHNGRPYYMTDWVEGSGIQSEEDYENLGRALATLHNNCKDSLPSMSRYTYKQTKLFKLQD
>NZ_CP019687.1|WP_024093991.1|1197390_1197534_+|hypothetical-protein
MHLWHHFKNEQYWYGVTNPVFDLTLHTYKDGKEVEKSGTTRNMEKLE
>NZ_CP019687.1|WP_051427842.1|1197782_1198157_-|cyanase
MAKVIDRSEAWTASALLGQATLSNEEAEQVASLLELDQGVAECLTEVPYRGTAIQMPPTDPLLYRFYEILLVYGPGMKEIIHEKFGDGIMSAIDFEMDIKRVPDPKGDRVLMMLNGKFLPYKKF
>NZ_CP019687.1|WP_023483542.1|1198276_1198699_-|OsmC-family-protein
MKVTTTWQGKRAFTSVGPSGYSVTMDATAAYGGDGKGATPMELILAGLAGCMGIDITMILRSTLDTIQSIEIEAEGTRDEEPPKGFTAIDLVFKINGDVPDHRIWRAIELGKEKYCAVSDSLKADIRYKLILNGKEAVKP
>NZ_CP019687.1|WP_023483541.1|1198743_1199490_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQTAGLTKSFQDTVVLKDINLQVKQNEIVVLLGPSGSGKSTLLRCINGLEELSGGTVEVNGIHIDAKMPARQRRARILEIRRETGMVFQQFNLYPHKTALGNVIESLLVVKKMRREEALKIGEQLLDRVGLADKKDVYPSRLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPELVGEVLDVMQQLAKDGMTMLVVTHEMKFARKVADRIVFMDAGIIVEEADPDAFFESPQSERARKFLKILDHE

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP019687_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019687_4

1194196-1194634

Orphan

NA:I-C

Consensus_repeat	Method
ATTTCAATCCACGNCATCCGCGTAGGATGCGAC	CRT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	CRISPRCasFinder
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP019687_4

>merge|NZ_CP019687|4|1194196-1194634|CRT,CRISPRCasFinder,PILER-CR
TTTCAATCCATGCATTCCACGTAGGATGCGACTAGAAATTTACGATACGACTGGTATTGTGACACCTATAATTTCAATCCACGCATCCACATGGGATGCGACCTTTAGCGTTGTTCGAAACTGCAATTACTTCATGATTTCAATCCACGCATCCGCGTAGGATGCGACGCGTGCGGACGGCCGCCACATAATCGGGGTTTTTATTTCAATCCACGCATCCGCGTAGGATGCGACATTCGCCTGTCGCCATATGACACTGGCCACAGAACGATTTCAATCCACGCATCCGCGTAGGATGCGACCATATCGTGAGTCAGGCGACTTACGATTCATACCGTATTTCAATCCACGTATCCGCGTAGGATGCGACACCCTTCGGCTTCTGCAACAGCAGATACCCGGTCATAATTTCAATCCACGCATCCGCGTAGGATGCGAC

>NZ_CP019687|4|3|1194196-1194634|CRT
TTTCAATCCATGCATTCCACGTAGGATGCGAC	TAGAAATTTACGATACGACTGGTATTGTGACACCTATA
ATTTCAATCCACGCATCCACATGGGATGCGAC	CTTTAGCGTTGTTCGAAACTGCAATTACTTCATG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	GCGTGCGGACGGCCGCCACATAATCGGGGTTTTT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	ATTCGCCTGTCGCCATATGACACTGGCCACAGAACG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	CATATCGTGAGTCAGGCGACTTACGATTCATACCGT
ATTTCAATCCACGTATCCGCGTAGGATGCGAC	ACCCTTCGGCTTCTGCAACAGCAGATACCCGGTCATA
ATTTCAATCCACGCATCCGCGTAGGATGCGAC

>NZ_CP019687|4|4|1194266-1194634|CRISPRCasFinder
ATTTCAATCCACGCATCCACATGGGATGCGAC	CTTTAGCGTTGTTCGAAACTGCAATTACTTCATG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	GCGTGCGGACGGCCGCCACATAATCGGGGTTTTT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	ATTCGCCTGTCGCCATATGACACTGGCCACAGAACG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	CATATCGTGAGTCAGGCGACTTACGATTCATACCGT
ATTTCAATCCACGTATCCGCGTAGGATGCGAC	ACCCTTCGGCTTCTGCAACAGCAGATACCCGGTCATA
ATTTCAATCCACGCATCCGCGTAGGATGCGAC

>NZ_CP019687|4|4|1194332-1194634|PILER-CR
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	GCGTGCGGACGGCCGCCACATAATCGGGGTTTTT
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	ATTCGCCTGTCGCCATATGACACTGGCCACAGAACG
ATTTCAATCCACGCATCCGCGTAGGATGCGAC	CATATCGTGAGTCAGGCGACTTACGATTCATACCGT
ATTTCAATCCACGTATCCGCGTAGGATGCGAC	ACCCTTCGGCTTCTGCAACAGCAGATACCCGGTCATA
ATTTCAATCCACGCATCCGCGTAGGATGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019687.1\|WP_036654315.1\|1196036_1196222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_023483488.1\|1192452_1193085_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274926
NZ_CP019687.1\|WP_051427842.1\|1197782_1198157_-\|cyanase	unknown	unknown	gnl\|CDD\|235079
NZ_CP019687.1\|WP_077584960.1\|1195449_1196049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_155116373.1\|1186186_1186339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_077584959.1\|1191064_1191460_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP019687.1\|WP_036654311.1\|1195226_1195421_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019687.1\|WP_077584961.1\|1196433_1196826_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|131952
NZ_CP019687.1\|WP_144029621.1\|1196961_1197258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274345
NZ_CP019687.1\|WP_024093999.1\|1189901_1190201_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225511
NZ_CP019687.1\|WP_024093998.1\|1190258_1190579_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP019687.1\|WP_077584955.1\|1185542_1185770_+\|DUF3951-domain-containing-protein	unknown	unknown	gnl\|CDD\|315734
NZ_CP019687.1\|WP_077584956.1\|1186596_1187049_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP019687.1\|WP_023483538.1\|1200191_1201058_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270431
NZ_CP019687.1\|WP_036656690.1\|1188415_1188772_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198398
NZ_CP019687.1\|WP_024093991.1\|1197390_1197534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP019687.1\|WP_023483541.1\|1198743_1199490_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP019687.1\|WP_023483542.1\|1198276_1198699_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP019687.1\|WP_036654309.1\|1189067_1189811_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP019687.1\|WP_024093997.1\|1190665_1190944_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098

Protein	Function_ID	Function_description	E-value
NZ_CP019687.1\|WP_023483488.1\|1192452_1193085_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	8.34787e-98
NZ_CP019687.1\|WP_051427842.1\|1197782_1198157_-\|cyanase	gnl\|CDD\|235079	PRK02866, PRK02866, cyanate hydratase; Validated.	3.04059e-74
NZ_CP019687.1\|WP_077584959.1\|1191064_1191460_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.33465e-20
NZ_CP019687.1\|WP_144029621.1\|1196961_1197258_-\|hypothetical-protein	gnl\|CDD\|274345	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat. [Cellular processes, Sporulation and germination].	1.5762e-06
NZ_CP019687.1\|WP_077584961.1\|1196433_1196826_-\|phosphotransferase	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	1.68758e-06
NZ_CP019687.1\|WP_024093999.1\|1189901_1190201_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000117275
NZ_CP019687.1\|WP_024093998.1\|1190258_1190579_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	5.50062e-07
NZ_CP019687.1\|WP_077584955.1\|1185542_1185770_+\|DUF3951-domain-containing-protein	gnl\|CDD\|315734	pfam13131, DUF3951, Protein of unknown function (DUF3951). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 56 and 71 amino acids in length. There is a conserved YTP sequence motif.	8.43279e-09
NZ_CP019687.1\|WP_077584956.1\|1186596_1187049_-\|FUSC-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.6152e-13
NZ_CP019687.1\|WP_023483538.1\|1200191_1201058_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270431	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This group contains uncharacterized periplasmic cystine-binding domain of ATP-binding cassette (ABC) transporters. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.93477e-78
NZ_CP019687.1\|WP_036656690.1\|1188415_1188772_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198398	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria. The family includes some bacterial LuxR and ArsR family transcriptional regulators. The a C-terminal conserved domain shows sequence similarity to the N-terminal catalytic GIY-YIG domains of intron-encoded homing endonucleases. Besides, they have an N-terminally fused transcriptional regulators module, comprising the winged helix-turn-helix (wHTH) domain and uncharacterized domain DUF2087. At this point, they are distinct from GIY-YIG homing endonucleases, which typically contain a variety of C-terminally fused nuclease-associated modular DNA-binding domains (NUMODs). Moreover, some key residues relevant to catalysis in GIY-YIG endonucleases are mutanted or absent in this family, which suggests that members in this family might lose the catalytic function that GIY-YIG endonucleases possess. This family also includes many uncharacterized hypothetical proteins that consist of a standalone GIY-YIG like domain.	2.06878e-40
NZ_CP019687.1\|WP_024093991.1\|1197390_1197534_+\|hypothetical-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	0.000424963
NZ_CP019687.1\|WP_023483541.1\|1198743_1199490_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.66551e-144
NZ_CP019687.1\|WP_023483542.1\|1198276_1198699_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	3.01646e-33
NZ_CP019687.1\|WP_036654309.1\|1189067_1189811_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.42012e-40
NZ_CP019687.1\|WP_024093997.1\|1190665_1190944_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.11078e-05

>NZ_CP019687.1|WP_023483488.1|1192452_1193085_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MNLCFQDVLTEEKQVRELIGNSSEVAKHKSIHHIDSYCREFIAKTPLIFISTSDKEGNCDVSPRGDAAGFVLVLDDKHLVIPERPGNRRIDSVRNILSSPRIGLIFLIPGLEETLRINGRACITKNPELMNRMQAREKTPLLGIGVEVEECYVHCAKAFKRSQTWEAGSWLNQDLLPKVSKMLVAHVNREDFTEEIIAKGLKESYEKRLY
>NZ_CP019687.1|WP_077584959.1|1191064_1191460_+|IS3-family-transposase
MAIRLLSYVFGHSNNNGLVFQTVNKAIQAASGSRPMLHSDRGFQYTSQKFKKILEKGNIMQSMSQVGRCIDNGPMESFWGALKCEKYYLHTYHTFEDLERDIEAYIYFYNYERLQAKLNGLSPMEFRIKAA
>NZ_CP019687.1|WP_024093997.1|1190665_1190944_+|IS3-family-transposase
MEIPRSSYYKWLKRKPSVREQENRMLTEAMMALYEKVGGIYGYHRLTLHICRETQQRINHKCIQRLMKLKRHSVGDSQKSKEICIVNSSARG
>NZ_CP019687.1|WP_024093998.1|1190258_1190579_+|helix-turn-helix-domain-containing-protein
MTKGRKTTWQERLEIVQYCLTHNQDYRKTAEQYQASCQQVYQWVKKYQDGGQEALQDGRGRKKAEEELTDADRQKLAMKKMEAEIERLRAENALLKKLEELERRGR
>NZ_CP019687.1|WP_024093999.1|1189901_1190201_+|helix-turn-helix-domain-containing-protein
MSKVQYNAKEKFAMIEEIESGELGLMGVAYKYGISKSTLVKWRRRYDVYGLEGLEVRTKNRSYSAELKLQAVLDYLKGELSQCDIIHKYKIASRTQLSN
>NZ_CP019687.1|WP_036654309.1|1189067_1189811_+|MerR-family-transcriptional-regulator
MLYTVKEVAALSQVTVKTLHHYHKIELLLPYEISEAGYRLYGVKELERLQQILFYRELDFPLEKIKQLLEGESRLGILSDQKDLLLARKQRLDRLIQTLDESIESVVKGEVMDQSSMFKGFESEQKWKNALAEHKEYLKETYGLDILEDRPIDVKDMNEKASRADRFMEEMAKALKAGMKFDDETVRGLIREHIDFLNQNVHATSAEDFALQARFFLDDDFHRNIMESRQTGLAYYLFTAAESYAVK
>NZ_CP019687.1|WP_036656690.1|1188415_1188772_+|GIY-YIG-nuclease-family-protein
MSRINKEHRAELQQAYKELKKRAAVYQIRNTMNGKLFIDSTLNLKTLNGEKFMLNMGTHNNRSLQQEWKEFGEDAFVFEVLEELKKTENEYVDIKDELKKLKDKWLGQVQPYGEKGYN
>NZ_CP019687.1|WP_077584956.1|1186596_1187049_-|FUSC-family-protein
MHKTATIYQSFITFLHKIGFSMLVFKTALAAAISWWIALLFTPEYPPYLAPIAAVLIVNITVASTLIKAFYRIVGVIYGVLINLLIGSLVSNSTIAIFLSVLLGTALTSAFRLNNQIVSQVGVSAVMALAFLKTPYYGWGGLRRRFLAVL
>NZ_CP019687.1|WP_155116373.1|1186186_1186339_-|hypothetical-protein
MEPLNDLLGQLAKEPNIELRFTPNLPPLKERIISSNLDFSIIRFRHAKPL
>NZ_CP019687.1|WP_077584955.1|1185542_1185770_+|DUF3951-domain-containing-protein
MKGLKIWKLPCCFLFAFALIVLIAVITFKIIKNKELPSNSYTPFDYITGQSNVEFHEEKEEKEEDMAKDDNKGKT
>NZ_CP019687.1|WP_036654311.1|1195226_1195421_-|hypothetical-protein
MFELIASGISAENAAQVINAVFNGLSIVSALSLCAGIAGGAAWFLSNGIGYMIKWAGKKTIIDW
>NZ_CP019687.1|WP_077584960.1|1195449_1196049_-|hypothetical-protein
MIGLIIIFCSIFFYIVSAIPVIATYFVFGESFAIILKEKGLIAAISTYPHFLPETLSTMLLLSIAFVISAKMLKIVFKNESILKNKKKILKTYLVSNVLLIFAAFIEALKIGDRKLINEIYFVSIGSKLIFSTVAVLTLISATSWNFIFASVGAIILYIIYFFANKQNTISERTRKVIARGDECLRIYSYGSRGFMPCL
>NZ_CP019687.1|WP_036654315.1|1196036_1196222_-|hypothetical-protein
MKAYISVGHKAAIFLIGLSILVGFIYGFVFEDTDQIKTIGFDGLNVLETFFQIFPIILSLV
>NZ_CP019687.1|WP_077584961.1|1196433_1196826_-|phosphotransferase
MEEEINHPALIHGDVTLPNIIIHPSRPFLIDWDLLRMGSTYYETAKTLLNTTNFDPANISALIKGYEQIKGLTPAERLLISAFFLLPVEAWRSARRIASGRRSPVFHILSRTWEKNLVPYDGWMNGHGNN
>NZ_CP019687.1|WP_144029621.1|1196961_1197258_-|hypothetical-protein
MTTREQITRLSSYIQKLKESGYPHLPNWLVTKSGQYWVSHNGRPYYMTDWVEGSGIQSEEDYENLGRALATLHNNCKDSLPSMSRYTYKQTKLFKLQD
>NZ_CP019687.1|WP_024093991.1|1197390_1197534_+|hypothetical-protein
MHLWHHFKNEQYWYGVTNPVFDLTLHTYKDGKEVEKSGTTRNMEKLE
>NZ_CP019687.1|WP_051427842.1|1197782_1198157_-|cyanase
MAKVIDRSEAWTASALLGQATLSNEEAEQVASLLELDQGVAECLTEVPYRGTAIQMPPTDPLLYRFYEILLVYGPGMKEIIHEKFGDGIMSAIDFEMDIKRVPDPKGDRVLMMLNGKFLPYKKF
>NZ_CP019687.1|WP_023483542.1|1198276_1198699_-|OsmC-family-protein
MKVTTTWQGKRAFTSVGPSGYSVTMDATAAYGGDGKGATPMELILAGLAGCMGIDITMILRSTLDTIQSIEIEAEGTRDEEPPKGFTAIDLVFKINGDVPDHRIWRAIELGKEKYCAVSDSLKADIRYKLILNGKEAVKP
>NZ_CP019687.1|WP_023483541.1|1198743_1199490_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQTAGLTKSFQDTVVLKDINLQVKQNEIVVLLGPSGSGKSTLLRCINGLEELSGGTVEVNGIHIDAKMPARQRRARILEIRRETGMVFQQFNLYPHKTALGNVIESLLVVKKMRREEALKIGEQLLDRVGLADKKDVYPSRLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPELVGEVLDVMQQLAKDGMTMLVVTHEMKFARKVADRIVFMDAGIIVEEADPDAFFESPQSERARKFLKILDHE
>NZ_CP019687.1|WP_023483538.1|1200191_1201058_-|amino-acid-ABC-transporter-substrate-binding-protein
MKNKPRKSLILVLAAFLLVALALSGCGSSARDQAGSTPGVSDNTGNKNSRTLEQIKQSGVLKVGIMGIYAPYNFLNDKKEMDGFDADIAKEIAKKMGLKAEFVSQEFSGMIAGLQAGKFDTVISQMTITEDRQKQMDFTEPYITNQVKVIVKQDNNSITKLEDFKGKNIGVGLGTNDEAYLRNEALPKVGNFTIKTYDDVITSLQDLNNGRIDATINNMYALKPIVEKNGFKIKVVGEAVKSDKAAIAVTKGNTELRDALNQALKDLKADGTYKTIFTKWFGEEPPAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019687_3	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	NZ_CP019687.1	575185-575220	0	1.0
NZ_CP019687_3	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	NZ_CP019687.1	575185-575219	0	1.0

1. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to position: 575185-575220, mismatch: 0, identity: 1.0

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
atttacatctgcttcagttgcatatttgtaattgtt	Protospacer
************************************

2. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to position: 575185-575219, mismatch: 0, identity: 1.0

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttacatctgcttcagttgcatatttgtaattgtt	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019687_3	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	KT361653	Paenibacillus phage Paisley, complete genome	35313-35348	0	1.0
NZ_CP019687_3	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	NC_028746	Paenibacillus phage Harrison, complete genome	35316-35351	0	1.0
NZ_CP019687_3	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	KT361653	Paenibacillus phage Paisley, complete genome	35313-35347	0	1.0
NZ_CP019687_3	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	NC_028746	Paenibacillus phage Harrison, complete genome	35316-35350	0	1.0
NZ_CP019687_4	4.4\|1194430\|36\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194430-1194465	36	NZ_CP019656	Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed1, complete sequence	36367-36402	0	1.0
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH460824	Paenibacillus phage Unity, complete genome	31019-31053	1	0.971
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	KP296792	Bacteriophage Lily, complete genome	34478-34514	1	0.973
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP020329	Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence	35866-35897	2	0.938
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP019796	Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence	29491-29522	2	0.938
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP019661	Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence	30452-30483	2	0.938
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP019658	Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence	30453-30484	2	0.938
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP020329	Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence	35866-35896	2	0.935
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP019796	Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence	29491-29521	2	0.935
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP019661	Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence	30452-30482	2	0.935
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP019658	Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence	30453-30483	2	0.935
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	MG727701	Paenibacillus phage Leyra, complete genome	32524-32560	3	0.919
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	NC_048689	Paenibacillus phage PBL1c, complete genome	29845-29881	3	0.919
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	KP296795	Bacteriophage Shelly, complete genome	31400-31436	3	0.919
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	NC_028788	Bacteriophage Diva, complete genome	29282-29318	3	0.919
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	KT361652	Paenibacillus phage Xenia, complete genome	31397-31433	3	0.919
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH460826	Paenibacillus phage Heath, complete genome	36053-36087	4	0.886
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH460825	Paenibacillus phage Scottie, complete genome	36483-36517	4	0.886
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH460827	Paenibacillus phage Halcyone, complete genome	36053-36087	4	0.886
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP019720	Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence	18376-18407	4	0.875
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP019720	Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence	18376-18406	4	0.871
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH460826	Paenibacillus phage Heath, complete genome	15843-15876	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH460825	Paenibacillus phage Scottie, complete genome	15203-15236	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH460824	Paenibacillus phage Unity, complete genome	15843-15876	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH460827	Paenibacillus phage Halcyone, complete genome	15843-15876	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH454080	Paenibacillus phage Ley, complete genome	15637-15670	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH454076	Paenibacillus phage Ash, complete genome	15637-15670	4	0.882
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	MH431938	Paenibacillus phage C7Cdelta, complete genome	15576-15609	4	0.882
NZ_CP019687_4	4.6\|1194566\|37\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194566-1194602	37	CP019719	Paenibacillus phage phiERICV, complete genome	8995-9031	4	0.892
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH454080	Paenibacillus phage Ley, complete genome	36477-36511	7	0.8
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH454076	Paenibacillus phage Ash, complete genome	36477-36511	7	0.8
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	MH431938	Paenibacillus phage C7Cdelta, complete genome	36428-36462	7	0.8
NZ_CP019687_2	2.3\|255465\|35\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255465-255499	35	KT755656	Paenibacillus phage Tripp, complete genome	37416-37450	7	0.8
NZ_CP019687_2	2.1\|255335\|33\|NZ_CP019687\|PILER-CR,CRISPRCasFinder,CRT	255335-255367	33	NZ_AP022333	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence	71940-71972	8	0.758
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP012255	Cronobacter sakazakii strain NCTC 8155 plasmid pCS2, complete sequence	30217-30247	8	0.742
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	42449-42479	8	0.742
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	43644-43674	8	0.742
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP012255	Cronobacter sakazakii strain NCTC 8155 plasmid pCS2, complete sequence	30216-30247	9	0.719
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	42448-42479	9	0.719
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	43643-43674	9	0.719
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	43998-44028	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	CP049261	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09c, complete sequence	121706-121736	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	CP045779	Cronobacter sakazakii strain CFSAN068773 plasmid p1CFSAN068773, complete sequence	121287-121317	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NC_009780	Cronobacter sakazakii ATCC BAA-894 plasmid pESA3, complete sequence	43618-43648	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_CP028976	Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence	66434-66464	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NC_010123	Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II, complete sequence	10297-10327	9	0.71
NZ_CP019687_3	3.6\|1191616\|31\|NZ_CP019687\|CRT	1191616-1191646	31	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1482611-1482641	9	0.71
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	43997-44028	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_CP028976	Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence	66434-66465	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NC_010123	Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II, complete sequence	10297-10328	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	CP049261	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09c, complete sequence	121705-121736	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1482611-1482642	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	CP045779	Cronobacter sakazakii strain CFSAN068773 plasmid p1CFSAN068773, complete sequence	121286-121317	10	0.688
NZ_CP019687_3	3.1\|1191615\|32\|NZ_CP019687\|CRISPRCasFinder	1191615-1191646	32	NC_009780	Cronobacter sakazakii ATCC BAA-894 plasmid pESA3, complete sequence	43617-43648	10	0.688
NZ_CP019687_3	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	MN693193	Marine virus AFVG_25M440, complete genome	43946-43980	10	0.714
NZ_CP019687_4	4.3\|1194364\|34\|NZ_CP019687\|CRT,CRISPRCasFinder,PILER-CR	1194364-1194397	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	801586-801619	10	0.706
NZ_CP019687_3	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	MN693193	Marine virus AFVG_25M440, complete genome	43945-43980	11	0.694

1. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
atttacatctgcttcagttgcatatttgtaattgtt	Protospacer
************************************

2. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
atttacatctgcttcagttgcatatttgtaattgtt	Protospacer
************************************

3. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttacatctgcttcagttgcatatttgtaattgtt	Protospacer
***********************************

4. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttacatctgcttcagttgcatatttgtaattgtt	Protospacer
***********************************

5. spacer 4.4|1194430|36|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019656 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

attcgcctgtcgccatatgacactggccacagaacg	CRISPR spacer
attcgcctgtcgccatatgacactggccacagaacg	Protospacer
************************************

6. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH460824 (Paenibacillus phage Unity, complete genome) position: , mismatch: 1, identity: 0.971

tcacacagccctcctcaaattatccgccctttggc	CRISPR spacer
tcacacagccctcctcaaattatccgcccattggc	Protospacer
***************************** *****

7. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to KP296792 (Bacteriophage Lily, complete genome) position: , mismatch: 1, identity: 0.973

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttcagcaacagcagatacccggtcata	Protospacer
************* ***********************

8. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 2, identity: 0.938

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
atagccgcgctatatggcggtcggcttaagta	Protospacer
***************************** *.

9. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 2, identity: 0.938

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
atagccgcgctatatggcggtcggcttaagta	Protospacer
***************************** *.

10. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
atagccgcgctatatggcggtcggcttaagta	Protospacer
***************************** *.

11. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.938

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
atagccgcgctatatggcggtcggcttaagta	Protospacer
***************************** *.

12. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 2, identity: 0.935

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tagccgcgctatatggcggtcggcttaagta	Protospacer
**************************** *.

13. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 2, identity: 0.935

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tagccgcgctatatggcggtcggcttaagta	Protospacer
**************************** *.

14. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tagccgcgctatatggcggtcggcttaagta	Protospacer
**************************** *.

15. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.935

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tagccgcgctatatggcggtcggcttaagta	Protospacer
**************************** *.

16. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MG727701 (Paenibacillus phage Leyra, complete genome) position: , mismatch: 3, identity: 0.919

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttctgcaacagcagaaacccggttgta	Protospacer
************************* *******..**

17. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to NC_048689 (Paenibacillus phage PBL1c, complete genome) position: , mismatch: 3, identity: 0.919

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttctgcaacagcagaaacccggttgta	Protospacer
************************* *******..**

18. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to KP296795 (Bacteriophage Shelly, complete genome) position: , mismatch: 3, identity: 0.919

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttctgcaacagcagaaacccggttgta	Protospacer
************************* *******..**

19. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to NC_028788 (Bacteriophage Diva, complete genome) position: , mismatch: 3, identity: 0.919

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttctgcaacagcagaaacccggttgta	Protospacer
************************* *******..**

20. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to KT361652 (Paenibacillus phage Xenia, complete genome) position: , mismatch: 3, identity: 0.919

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccttcggcttctgcaacagcagaaacccggttgta	Protospacer
************************* *******..**

21. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH460826 (Paenibacillus phage Heath, complete genome) position: , mismatch: 4, identity: 0.886

tcacac-agccctcctcaaattatccgccctttggc	CRISPR spacer
-catacgaaccctcctcaaattatccgcccattggc	Protospacer
 **.** *.********************* *****

22. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH460825 (Paenibacillus phage Scottie, complete genome) position: , mismatch: 4, identity: 0.886

tcacac-agccctcctcaaattatccgccctttggc	CRISPR spacer
-catacgaaccctcctcaaattatccgcccattggc	Protospacer
 **.** *.********************* *****

23. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH460827 (Paenibacillus phage Halcyone, complete genome) position: , mismatch: 4, identity: 0.886

tcacac-agccctcctcaaattatccgccctttggc	CRISPR spacer
-catacgaaccctcctcaaattatccgcccattggc	Protospacer
 **.** *.********************* *****

24. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
atagccgcgctatatggcggtcggctttaagt	Protospacer
*************************** *

25. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tagccgcgctatatggcggtcggctttaagt	Protospacer
************************** *

26. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH460826 (Paenibacillus phage Heath, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

27. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH460825 (Paenibacillus phage Scottie, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

28. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH460824 (Paenibacillus phage Unity, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

29. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH460827 (Paenibacillus phage Halcyone, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

30. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH454080 (Paenibacillus phage Ley, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

31. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH454076 (Paenibacillus phage Ash, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

32. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to MH431938 (Paenibacillus phage C7Cdelta, complete genome) position: , mismatch: 4, identity: 0.882

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
gcgtgcggacggccgacacataatcggtgtttac	Protospacer
*************** *********** **** .

33. spacer 4.6|1194566|37|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to CP019719 (Paenibacillus phage phiERICV, complete genome) position: , mismatch: 4, identity: 0.892

acccttcggcttctgcaacagcagatacccggtcata	CRISPR spacer
acccctcggcttccgcaacagcagatacccggttgta	Protospacer
****.********.*******************..**

34. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH454080 (Paenibacillus phage Ley, complete genome) position: , mismatch: 7, identity: 0.8

tcacacagccctcctcaaattatccgccctttggc	CRISPR spacer
ccacttggacctcctcagattatccgcccattggc	Protospacer
.*** ..* ********.*********** *****

35. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH454076 (Paenibacillus phage Ash, complete genome) position: , mismatch: 7, identity: 0.8

tcacacagccctcctcaaattatccgccctttggc	CRISPR spacer
ccacttggacctcctcagattatccgcccattggc	Protospacer
.*** ..* ********.*********** *****

36. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to MH431938 (Paenibacillus phage C7Cdelta, complete genome) position: , mismatch: 7, identity: 0.8

tcacacagccctcctcaaattatccgccctttggc	CRISPR spacer
ccacttggacctcctcagattatccgcccattggc	Protospacer
.*** ..* ********.*********** *****

37. spacer 2.3|255465|35|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to KT755656 (Paenibacillus phage Tripp, complete genome) position: , mismatch: 7, identity: 0.8

tcacacagccctcctcaaattatccgccctttggc	CRISPR spacer
ccacttggacctcctcagattatccgcccattggc	Protospacer
.*** ..* ********.*********** *****

38. spacer 2.1|255335|33|NZ_CP019687|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 8, identity: 0.758

attgcccgccgcgtgggcgtcgtacctgccctt	CRISPR spacer
catccgcgccgcgagggcgtcgttcctgccgtc	Protospacer
  * * ******* ********* ****** *.

39. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP012255 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS2, complete sequence) position: , mismatch: 8, identity: 0.742

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggtg	Protospacer
.***** ** **************   . **

40. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP049260 (Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence) position: , mismatch: 8, identity: 0.742

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggtg	Protospacer
.***** ** **************   . **

41. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NC_020263 (Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence) position: , mismatch: 8, identity: 0.742

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggtg	Protospacer
.***** ** **************   . **

42. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP012255 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS2, complete sequence) position: , mismatch: 9, identity: 0.719

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggtg	Protospacer
..***** ** **************   . **

43. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP049260 (Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence) position: , mismatch: 9, identity: 0.719

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggtg	Protospacer
..***** ** **************   . **

44. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NC_020263 (Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence) position: , mismatch: 9, identity: 0.719

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggtg	Protospacer
..***** ** **************   . **

45. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to CP027110 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggcg	Protospacer
.***** ** **************   . .*

46. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to CP049261 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09c, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggcg	Protospacer
.***** ** **************   . .*

47. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to CP045779 (Cronobacter sakazakii strain CFSAN068773 plasmid p1CFSAN068773, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggcg	Protospacer
.***** ** **************   . .*

48. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NC_009780 (Cronobacter sakazakii ATCC BAA-894 plasmid pESA3, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggcg	Protospacer
.***** ** **************   . .*

49. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_CP028976 (Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cagccgggcaatatggcggtcggcggtggcg	Protospacer
.***** ** **************   . .*

50. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NC_010123 (Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gagccgcgccatctggcggtcggcgggcgcg	Protospacer
 ********.** ***********  .  .*

51. spacer 3.6|1191616|31|NZ_CP019687|CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.71

tagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gagccgccctatacggcggtcggcgccgacg	Protospacer
 ****** *****.********** . . .*

52. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to CP027110 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggcg	Protospacer
..***** ** **************   . .*

53. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_CP028976 (Cronobacter sakazakii strain GZcsf-1 plasmid pGW2, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggcg	Protospacer
..***** ** **************   . .*

54. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NC_010123 (Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
tgagccgcgccatctggcggtcggcgggcgcg	Protospacer
  ********.** ***********  .  .*

55. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to CP049261 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09c, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggcg	Protospacer
..***** ** **************   . .*

56. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
cgagccgccctatacggcggtcggcgccgacg	Protospacer
  ****** *****.********** . . .*

57. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to CP045779 (Cronobacter sakazakii strain CFSAN068773 plasmid p1CFSAN068773, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggcg	Protospacer
..***** ** **************   . .*

58. spacer 3.1|1191615|32|NZ_CP019687|CRISPRCasFinder matches to NC_009780 (Cronobacter sakazakii ATCC BAA-894 plasmid pESA3, complete sequence) position: , mismatch: 10, identity: 0.688

atagccgcgctatatggcggtcggcttaattg	CRISPR spacer
gcagccgggcaatatggcggtcggcggtggcg	Protospacer
..***** ** **************   . .*

59. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to MN693193 (Marine virus AFVG_25M440, complete genome) position: , mismatch: 10, identity: 0.714

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttgcatctgctacagttgcatatttaattctaac	Protospacer
***.******** *************.   .*. .

60. spacer 4.3|1194364|34|NZ_CP019687|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

gcgtgcggacggccgccacataatcggggttttt	CRISPR spacer
cgatctgcaccgccgccacataatcgaggtttgc	Protospacer
  .* .* ** ***************.***** .

61. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to MN693193 (Marine virus AFVG_25M440, complete genome) position: , mismatch: 11, identity: 0.694

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
ctttgcatctgctacagttgcatatttaattctaac	Protospacer
 ***.******** *************.   .*. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

182770 : 240241

Paenibacillus_phage(21.43%)

integrase,transposase

attL 195647:195661|attR 211073:211087

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104932612.1\|182770_183815_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_023484160.1\|183865_184912_+	aminomethyl transferase family protein	NA	NA	NA	NA
WP_051428085.1\|188355_188547_+	hypothetical protein	NA	NA	NA	NA
WP_051428086.1\|188668_188893_+	hypothetical protein	NA	NA	NA	NA
WP_023484157.1\|188902_190018_+	carbohydrate binding domain-containing protein	A0A1V0E026	Clostridioides_phage	2.3e-43	41.7
WP_036658119.1\|192672_193356_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.5e-119	96.5
WP_023484916.1\|194511_194907_+	PRD domain-containing protein	NA	NA	NA	NA
WP_158225746.1\|194920_195319_-	S8 family serine peptidase	A0A127AWU5	Bacillus_phage	1.4e-11	41.9
WP_077584844.1\|195358_195649_+	hypothetical protein	NA	NA	NA	NA
195647:195661	attL	NA	NA	NA	NA
WP_155116255.1\|196136_196277_-	hypothetical protein	NA	NA	NA	NA
WP_051428087.1\|196367_197624_-	hypothetical protein	A0A0K2CP77	Brevibacillus_phage	1.4e-62	35.6
WP_024093569.1\|197863_198823_+	hypothetical protein	A0A2I7SCF1	Paenibacillus_phage	2.6e-112	89.9
WP_023484911.1\|198837_199200_+	hypothetical protein	A0A2I7SCG2	Paenibacillus_phage	6.4e-48	79.2
WP_077584845.1\|200744_201038_-\|transposase	transposase	NA	NA	NA	NA
WP_036658123.1\|201034_201547_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_023483535.1\|201805_202963_-	MFS transporter	NA	NA	NA	NA
WP_036658125.1\|203074_203953_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_036658128.1\|204748_204976_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_036658506.1\|206976_207141_+	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA
WP_023485392.1\|207283_207847_+	peroxiredoxin	NA	NA	NA	NA
WP_036658131.1\|207858_209388_+	alkyl hydroperoxide reductase subunit F	A0A2I2L5E1	Orpheovirus	5.7e-37	32.4
WP_158529810.1\|209704_210040_+	hypothetical protein	NA	NA	NA	NA
WP_036658135.1\|210026_210260_+	hypothetical protein	NA	NA	NA	NA
WP_036658138.1\|210293_210593_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_051428088.1\|210860_211232_+	3'-5' exonuclease	A2I2Z6	Vibrio_virus	4.3e-15	44.0
211073:211087	attR	NA	NA	NA	NA
WP_036658141.1\|211364_211802_-	hypothetical protein	NA	NA	NA	NA
WP_051428089.1\|212716_213247_+	hypothetical protein	NA	NA	NA	NA
WP_023483545.1\|213460_214069_+	hypothetical protein	A0A0K2CP77	Brevibacillus_phage	8.3e-32	34.5
WP_155116257.1\|214058_214211_+	hypothetical protein	NA	NA	NA	NA
WP_051428090.1\|214943_215285_+	hypothetical protein	NA	NA	NA	NA
WP_023483466.1\|215324_216299_+	hypothetical protein	A0A0K2CP77	Brevibacillus_phage	3.0e-52	36.3
WP_155116258.1\|216288_216438_+	hypothetical protein	NA	NA	NA	NA
WP_023483464.1\|217608_217995_+	DUF1878 family protein	NA	NA	NA	NA
WP_023483463.1\|218039_219182_+	S8 family peptidase	A0A1B0T6A2	Bacillus_phage	7.2e-45	37.4
WP_036658145.1\|220490_220691_+	hypothetical protein	NA	NA	NA	NA
WP_036658150.1\|222489_222687_+	hypothetical protein	NA	NA	NA	NA
WP_023484139.1\|222922_223117_-	hypothetical protein	NA	NA	NA	NA
WP_046655214.1\|223873_224359_-	hypothetical protein	NA	NA	NA	NA
WP_036658514.1\|224479_224950_+	hypothetical protein	NA	NA	NA	NA
WP_036658153.1\|225867_226344_+	hypothetical protein	NA	NA	NA	NA
WP_036658155.1\|226386_226620_+	hypothetical protein	NA	NA	NA	NA
WP_036658160.1\|227954_229067_+	alanine dehydrogenase	NA	NA	NA	NA
WP_023483532.1\|229157_230528_+	amino acid permease	NA	NA	NA	NA
WP_024095239.1\|232609_233173_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.6e-24	41.0
WP_036656001.1\|233387_233705_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023484372.1\|235152_236340_-	MFS transporter	NA	NA	NA	NA
WP_036658167.1\|236411_237578_-	amidohydrolase	NA	NA	NA	NA
WP_158225752.1\|237762_239058_-	hypothetical protein	NA	NA	NA	NA
WP_104932612.1\|239196_240241_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9

DBSCAN-SWA_2

369073 : 432820

Paenibacillus_phage(58.33%)

head,portal,tail,integrase,transposase,holin,capsid,terminase

attL 361277:361293|attR 410257:410273

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
361277:361293	attL	NA	NA	NA	NA
WP_104932543.1\|369073_369943_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	2.2e-134	98.7
WP_036658287.1\|371687_371963_+	hypothetical protein	NA	NA	NA	NA
WP_046655359.1\|372076_372895_+	sporulation protein YunB	NA	NA	NA	NA
WP_042119748.1\|372949_374026_-	M23 family metallopeptidase	A0A7K9	Microcystis_virus	5.1e-08	37.0
WP_024094891.1\|374214_375108_+	lipoyl synthase	NA	NA	NA	NA
WP_023482946.1\|375145_375565_+	YutD family protein	NA	NA	NA	NA
WP_023483243.1\|377241_378048_-	NAD kinase	NA	NA	NA	NA
WP_036658570.1\|378191_379436_-	sporulation integral membrane protein YlbJ	NA	NA	NA	NA
WP_036658291.1\|379753_380137_+	globin	NA	NA	NA	NA
WP_077584863.1\|380164_380866_+	DUF2225 domain-containing protein	NA	NA	NA	NA
WP_036658295.1\|380993_381230_-	hypothetical protein	NA	NA	NA	NA
WP_077584864.1\|381231_381432_-	YycC family protein	NA	NA	NA	NA
WP_036658297.1\|381654_383460_+	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_023483248.1\|384037_384403_+	hypothetical protein	NA	NA	NA	NA
WP_051428101.1\|384455_385595_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	2.2e-62	39.7
WP_036658299.1\|385674_386139_-	hypothetical protein	A0A2I7SC21	Paenibacillus_phage	1.1e-49	58.8
WP_036658575.1\|386146_386455_-	helix-turn-helix transcriptional regulator	A0A0K2CZS1	Paenibacillus_phage	1.9e-16	33.5
WP_036658301.1\|386931_387114_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046655182.1\|387083_387332_+	hypothetical protein	NA	NA	NA	NA
WP_036658305.1\|387348_387600_+	hypothetical protein	A0A0K2CYH1	Paenibacillus_phage	2.8e-10	46.9
WP_036658306.1\|387615_387846_+	hypothetical protein	A0A2I7SC43	Paenibacillus_phage	1.8e-32	88.2
WP_036658308.1\|387842_388127_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	2.1e-46	95.7
WP_036658310.1\|388159_388531_+	hypothetical protein	A0A0K2CZF3	Paenibacillus_phage	5.7e-60	100.0
WP_036658312.1\|388567_389278_+	hypothetical protein	A0A0K2CZT8	Paenibacillus_phage	3.6e-127	100.0
WP_036658314.1\|389343_390654_+	AAA family ATPase	A0A0K2CZN2	Paenibacillus_phage	1.4e-180	99.8
WP_023483362.1\|390656_391733_+	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	5.1e-210	100.0
WP_036658315.1\|391757_392264_+	hypothetical protein	A0A0K2CZ91	Paenibacillus_phage	1.8e-93	100.0
WP_036658317.1\|392273_393854_+	DEAD/DEAH box helicase	A0A0K2CZF8	Paenibacillus_phage	4.7e-305	100.0
WP_077584865.1\|393889_394060_+	DUF3797 domain-containing protein	A0A0K2CZU3	Paenibacillus_phage	6.9e-29	100.0
WP_036658319.1\|394067_396320_+	AAA family ATPase	A0A0K2CZ75	Paenibacillus_phage	0.0e+00	100.0
WP_036658320.1\|396606_396885_+	hypothetical protein	A0A0K2CZH7	Paenibacillus_phage	4.9e-48	100.0
WP_036658322.1\|396874_397270_+	RusA family crossover junction endodeoxyribonuclease	A0A0K2CZ96	Paenibacillus_phage	2.0e-71	100.0
WP_036658324.1\|397273_397495_+	hypothetical protein	A0A0K2CZG3	Paenibacillus_phage	9.9e-36	100.0
WP_158673680.1\|397511_398597_+	sigma-70 family RNA polymerase sigma factor	A0A0K2CZU8	Paenibacillus_phage	1.2e-209	99.7
WP_036658328.1\|398630_398825_+	hypothetical protein	A0A0K2CZP1	Paenibacillus_phage	3.2e-30	100.0
WP_036658330.1\|398821_399250_+	RinA family phage transcriptional regulator	A0A0K2CZI2	Paenibacillus_phage	1.9e-75	100.0
WP_036658332.1\|399382_399589_+	hypothetical protein	A0A0K2CZA1	Paenibacillus_phage	2.2e-29	93.9
WP_046655181.1\|399644_399887_+	hypothetical protein	A0A1C8E971	Bacillus_phage	1.3e-28	85.5
WP_023484968.1\|400462_401242_+\|terminase	phage-related terminase-like protein small subunit	A0A1L2JY44	Aeribacillus_phage	6.4e-53	52.3
WP_023484969.1\|401225_402521_+\|terminase	PBSX family phage terminase large subunit	A0A1L2JY46	Aeribacillus_phage	3.9e-140	58.6
WP_023484970.1\|402521_403931_+\|portal	phage portal protein	A0A097PAT2	Streptococcus_pyogenes_phage	2.4e-114	50.7
WP_158529811.1\|403839_404454_+	hypothetical protein	A0A097PBF2	Streptococcus_pyogenes_phage	2.3e-13	35.7
WP_077584867.1\|404459_404732_+\|capsid	minor capsid protein	S5MTV5	Brevibacillus_phage	9.8e-17	47.1
WP_023484972.1\|404812_405409_+	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_023484973.1\|405421_406318_+	hypothetical protein	A7J297	Streptococcus_phage	4.3e-69	52.1
WP_023484974.1\|406320_406644_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_023484975.1\|406640_406946_+	hypothetical protein	NA	NA	NA	NA
WP_036658585.1\|406951_407287_+	hypothetical protein	A0A097PAT9	Streptococcus_pyogenes_phage	2.4e-09	37.2
WP_023484976.1\|407291_407702_+	DUF5072 family protein	A0A097PAW5	Streptococcus_pyogenes_phage	3.9e-33	44.9
WP_023484977.1\|407715_408240_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.6e-52	72.8
WP_036658588.1\|408242_408545_+	hypothetical protein	NA	NA	NA	NA
WP_077585227.1\|408670_408970_+	phenylalanine racemase	A0A097PAX1	Streptococcus_pyogenes_phage	5.3e-16	45.8
WP_023484978.1\|408990_412191_+	tape measure protein	M1IEW1	Bacillus_virus	6.7e-56	43.2
410257:410273	attR	NA	NA	NA	NA
WP_036658337.1\|412193_412892_+	hypothetical protein	A0A1B2APY0	Phage_Wrath	2.4e-43	41.8
WP_158673688.1\|412948_414370_+\|tail	phage tail protein	A0A1B2APX2	Phage_Wrath	1.6e-110	54.4
WP_023484981.1\|414369_415134_+	hypothetical protein	A0A0C5AEQ0	Bacteriophage	1.5e-70	80.9
WP_036658339.1\|415145_415346_+	hypothetical protein	A0A0C5AE97	Paenibacillus_phage	3.9e-15	62.5
WP_155116252.1\|415471_415639_+	hypothetical protein	A0A0C5ABK5	Bacteriophage	2.3e-16	87.0
WP_077585228.1\|416181_416850_+	N-acetylmuramoyl-L-alanine amidase	A0A0C5AEW3	Paenibacillus_phage	1.3e-126	94.6
WP_051428102.1\|417113_417554_-	hypothetical protein	NA	NA	NA	NA
WP_036658597.1\|418198_418441_+	hypothetical protein	A0A0C5AN23	Paenibacillus_phage	1.6e-31	92.5
WP_104932584.1\|419691_420039_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.5e-57	99.1
WP_096761240.1\|420522_421673_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.3e-35	35.1
WP_036658346.1\|424171_425734_+	peptidase M4 family protein	NA	NA	NA	NA
WP_077584997.1\|426021_426108_+\|holin	putative holin-like toxin	A0A0K2CZR6	Paenibacillus_phage	2.0e-05	100.0
WP_077584868.1\|426326_427610_-	glycosyltransferase	NA	NA	NA	NA
WP_023483236.1\|427947_429171_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036658350.1\|429539_429887_+	hypothetical protein	A0A0K2CYG5	Paenibacillus_phage	8.9e-23	67.5
WP_023485372.1\|430563_431976_+	NADP-dependent phosphogluconate dehydrogenase	E3SJC4	Synechococcus_phage	3.9e-32	29.4
WP_042119627.1\|431977_432241_-	hypothetical protein	NA	NA	NA	NA
WP_077584869.1\|432718_432820_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_3

527510 : 540303

Paenibacillus_phage(58.33%)

integrase

attL 527168:527183|attR 540331:540346

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
527168:527183	attL	NA	NA	NA	NA
WP_077584874.1\|527510_528128_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	5.1e-37	53.0
WP_024094340.1\|528111_528447_-\|integrase	tyrosine-type recombinase/integrase	S5MNZ2	Brevibacillus_phage	6.8e-12	43.2
WP_051428114.1\|528612_529164_-	helix-turn-helix domain-containing protein	R9VW28	Paenibacillus_phage	3.6e-18	33.3
WP_024094338.1\|529310_529535_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158529812.1\|529534_529705_+	hypothetical protein	NA	NA	NA	NA
WP_042119037.1\|530129_530333_+	hypothetical protein	A0A0S2SXP3	Bacillus_phage	6.8e-07	40.0
WP_040930346.1\|530415_530931_-	DUF3231 family protein	NA	NA	NA	NA
WP_077584875.1\|531042_531369_+	hypothetical protein	A0A0C5AFG5	Paenibacillus_phage	1.6e-45	82.2
WP_036658701.1\|531625_531976_+	YxeA family protein	A0A0K2CYS5	Paenibacillus_phage	1.4e-28	60.0
WP_024094328.1\|534947_535187_+	hypothetical protein	A0A0C5AEG8	Bacteriophage	2.8e-36	100.0
WP_077585229.1\|535186_535855_+	N-acetylmuramoyl-L-alanine amidase family protein	A0A0K2CXQ8	Paenibacillus_phage	4.0e-128	95.9
WP_024094326.1\|535864_536107_+	hypothetical protein	A0A2I7SCT4	Paenibacillus_phage	7.3e-32	97.5
WP_023483239.1\|536497_537829_+	lytic polysaccharide monooxygenase	A0A2D1GD28	Mycobacterium_phage	4.1e-07	29.3
WP_104932493.1\|538199_538646_+	hypothetical protein	NA	NA	NA	NA
WP_024094322.1\|539090_539480_+	hypothetical protein	NA	NA	NA	NA
WP_024094321.1\|539627_540041_-	hypothetical protein	A0A0K2CYM1	Paenibacillus_phage	8.7e-33	98.6
WP_024094320.1\|540105_540303_+	helix-turn-helix transcriptional regulator	D0R7I7	Paenibacillus_phage	2.4e-09	76.9
540331:540346	attR	NA	NA	NA	NA

DBSCAN-SWA_4

560604 : 639472

108

Paenibacillus_phage(96.05%)

tRNA,head,portal,tail,protease,holin,transposase,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077584880.1\|560604_561357_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_023484358.1\|561499_561841_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_023484359.1\|561952_562555_+	signal peptidase I	NA	NA	NA	NA
WP_036658681.1\|562646_563528_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_023484361.1\|563820_564504_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	5.7e-21	37.7
WP_077584881.1\|564558_565383_+	hypothetical protein	NA	NA	NA	NA
WP_077584882.1\|565625_566369_+	hypothetical protein	NA	NA	NA	NA
WP_023484363.1\|566365_566698_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_023484364.1\|566707_567112_+	YraN family protein	NA	NA	NA	NA
WP_023484366.1\|567631_569314_-	recombinase family protein	A0A0K2CYN0	Paenibacillus_phage	0.0e+00	100.0
WP_036658676.1\|569315_569654_-	helix-turn-helix transcriptional regulator	A0A0K2CZ35	Paenibacillus_phage	9.2e-57	100.0
WP_046655112.1\|569748_569970_+	helix-turn-helix transcriptional regulator	A0A0K2CYW6	Paenibacillus_phage	1.7e-35	100.0
WP_144029586.1\|570092_570284_+	hypothetical protein	A0A0K2CYD7	Paenibacillus_phage	5.0e-28	100.0
WP_036658672.1\|570298_570568_+	hypothetical protein	A0A0K2CYH1	Paenibacillus_phage	8.4e-45	100.0
WP_036658670.1\|570588_570792_+	hypothetical protein	R9W009	Paenibacillus_phage	2.2e-34	100.0
WP_036658668.1\|570798_571176_+	hypothetical protein	R9VW30	Paenibacillus_phage	1.2e-65	100.0
WP_036658666.1\|571172_571403_+	hypothetical protein	R9W0P6	Paenibacillus_phage	1.0e-35	100.0
WP_155116304.1\|571386_571560_+	hypothetical protein	R9VY98	Paenibacillus_phage	6.0e-28	100.0
WP_023483806.1\|571564_572317_+	phage antirepressor KilAC domain-containing protein	A0A0K2CY14	Paenibacillus_phage	3.9e-140	100.0
WP_036658665.1\|572313_572889_+	hypothetical protein	A0A0K2CYP2	Paenibacillus_phage	1.1e-102	100.0
WP_036658663.1\|572881_573139_+	hypothetical protein	A0A0K2CZ43	Paenibacillus_phage	1.7e-42	100.0
WP_036658661.1\|573128_573641_-	hypothetical protein	A0A0K2CYX7	Paenibacillus_phage	2.9e-94	100.0
WP_036658659.1\|573727_574072_+	hypothetical protein	A0A0K2CYQ7	Paenibacillus_phage	3.8e-58	100.0
WP_155116354.1\|574049_574190_+	hypothetical protein	A0A0K2CYI0	Paenibacillus_phage	3.1e-19	100.0
WP_036658656.1\|574289_574553_+	hypothetical protein	A0A0K2CYP7	Paenibacillus_phage	2.6e-43	100.0
WP_023485214.1\|574549_575098_+	host-nuclease inhibitor Gam family protein	A0A0K2CZ48	Paenibacillus_phage	4.3e-96	100.0
WP_023485215.1\|575100_575739_+	ERF family protein	A0A0K2CYY2	Paenibacillus_phage	5.9e-113	100.0
WP_036658655.1\|575728_576133_+	single-stranded DNA-binding protein	A0A0K2CYR2	Paenibacillus_phage	7.8e-71	100.0
WP_036658652.1\|576141_576531_+	hypothetical protein	A0A0K2CYI4	Paenibacillus_phage	1.5e-66	100.0
WP_036658651.1\|576527_576860_+	hypothetical protein	A0A0K2CYQ2	Paenibacillus_phage	2.8e-58	100.0
WP_023483153.1\|576939_577722_+	DnaD domain protein	A0A0K2CZ53	Paenibacillus_phage	1.9e-137	100.0
WP_104932619.1\|577621_578434_+	ATP-binding protein	A0A0K2CYY7	Paenibacillus_phage	7.5e-121	99.5
WP_036658649.1\|578552_578771_+	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	3.7e-35	100.0
WP_036658646.1\|578763_579138_+	RusA family crossover junction endodeoxyribonuclease	A0A0K2CYQ8	Paenibacillus_phage	1.4e-66	100.0
WP_036658643.1\|579319_579685_+	hypothetical protein	A0A0K2CZ58	Paenibacillus_phage	4.7e-67	100.0
WP_023483250.1\|579701_580484_+	DNA cytosine methyltransferase	A0A0K2CYZ1	Paenibacillus_phage	7.4e-158	100.0
WP_036658642.1\|580467_580650_+	hypothetical protein	A0A0K2CYS1	Paenibacillus_phage	7.7e-26	100.0
WP_036658640.1\|580701_580935_+	hypothetical protein	A0A0K2CYJ4	Paenibacillus_phage	4.3e-37	100.0
WP_036658638.1\|580927_581173_+	hypothetical protein	A0A0K2CYR3	Paenibacillus_phage	1.6e-39	100.0
WP_155116353.1\|581169_581313_+	hypothetical protein	A0A0K2CZ63	Paenibacillus_phage	3.0e-17	100.0
WP_077584885.1\|581441_581879_+	transcriptional regulator	A0A0K2CYZ6	Paenibacillus_phage	3.7e-74	100.0
WP_036658635.1\|582084_582429_+	YxeA family protein	A0A0K2CYS5	Paenibacillus_phage	4.5e-59	100.0
WP_023484796.1\|582483_582900_-	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CYJ8	Paenibacillus_phage	9.2e-75	100.0
WP_036658634.1\|582930_583134_-	type II toxin-antitoxin system HicA family toxin	A0A0K2CYR6	Paenibacillus_phage	1.5e-33	100.0
WP_023484126.1\|583313_583628_+	hypothetical protein	A0A0K2CZ01	Paenibacillus_phage	1.9e-48	100.0
WP_077584886.1\|583614_583959_+	HNH endonuclease	A0A0K2CZA0	Paenibacillus_phage	2.8e-53	87.7
WP_023484127.1\|584062_584377_+\|terminase	P27 family phage terminase small subunit	A0A0K2CZ94	Paenibacillus_phage	1.6e-50	100.0
WP_077584887.1\|584357_586082_+\|terminase	terminase large subunit	A0A0K2CZH9	Paenibacillus_phage	0.0e+00	100.0
WP_036656297.1\|586096_587332_+\|portal	phage portal protein	A0A0K2CZB0	Paenibacillus_phage	3.5e-239	99.8
WP_046655269.1\|587321_588038_+\|protease	Clp protease ClpP	A0A0K2CZ28	Paenibacillus_phage	1.1e-131	100.0
WP_023484582.1\|588034_589177_+\|capsid	phage major capsid protein	A0A0K2CZ99	Paenibacillus_phage	6.6e-208	99.5
WP_036656301.1\|589302_589566_+\|head,tail	phage gp6-like head-tail connector protein	A0A0K2CZI4	Paenibacillus_phage	4.2e-41	100.0
WP_023484581.1\|589562_589883_+\|head	phage head closure protein	A0A0K2CZB5	Paenibacillus_phage	3.0e-57	100.0
WP_036656302.1\|589879_590272_+	HK97 gp10 family phage protein	A0A0K2CZ33	Paenibacillus_phage	4.3e-66	100.0
WP_036656304.1\|590268_590598_+	hypothetical protein	A0A0K2CZA4	Paenibacillus_phage	4.4e-56	100.0
WP_046655268.1\|590633_591230_+	hypothetical protein	A0A0K2CZP8	Paenibacillus_phage	3.9e-111	100.0
WP_023484578.1\|591301_591673_+	hypothetical protein	A0A0K2CZI8	Paenibacillus_phage	2.9e-64	100.0
WP_077584888.1\|591906_592338_+	hypothetical protein	A0A2I7SBZ5	Paenibacillus_phage	5.3e-49	94.6
WP_077584889.1\|592283_595610_+\|tail	phage tail tape measure protein	A0A0K2CYK9	Paenibacillus_phage	4.3e-308	100.0
WP_023484576.1\|595610_596477_+\|tail	phage tail family protein	A0A0K2CZA8	Paenibacillus_phage	4.0e-165	100.0
WP_023484575.1\|596479_597598_+	siphovirus ReqiPepy6 Gp37-like family protein	A0A0K2CZQ1	Paenibacillus_phage	2.0e-212	100.0
WP_051428011.1\|597603_598677_+	hypothetical protein	A0A0K2CZJ3	Paenibacillus_phage	7.1e-212	99.7
WP_036656307.1\|598686_599028_+	hypothetical protein	A0A0K2CZC5	Paenibacillus_phage	9.9e-59	100.0
WP_167552488.1\|599024_599186_+	hypothetical protein	A0A0K2CZ44	Paenibacillus_phage	8.8e-26	100.0
WP_024094415.1\|599166_599406_+	hypothetical protein	R9W0N4	Paenibacillus_phage	2.8e-36	100.0
WP_077585230.1\|599405_600080_+	N-acetylmuramoyl-L-alanine amidase family protein	R9VY83	Paenibacillus_phage	1.8e-136	100.0
WP_051428122.1\|600364_600619_+	hypothetical protein	R9W000	Paenibacillus_phage	2.7e-37	100.0
WP_077584890.1\|600805_601774_+	hypothetical protein	A0A0K2CYL7	Paenibacillus_phage	4.6e-178	99.7
WP_036658891.1\|601793_602147_+	hypothetical protein	R9W0N7	Paenibacillus_phage	4.8e-64	100.0
WP_036658895.1\|602130_602574_+	hypothetical protein	A0A0K2CYV0	Paenibacillus_phage	5.8e-75	100.0
WP_023484754.1\|603426_606354_+	RICIN domain-containing protein	A0A0K2CYN4	Paenibacillus_phage	0.0e+00	100.0
WP_036653966.1\|606665_606929_-	hypothetical protein	A0A0K2CYM1	Paenibacillus_phage	3.8e-42	100.0
WP_036653970.1\|607014_607200_-	hypothetical protein	A0A0K2CZ26	Paenibacillus_phage	8.3e-28	100.0
WP_036653973.1\|607668_607896_+	helix-turn-helix transcriptional regulator	A0A0K2CYV5	Paenibacillus_phage	8.6e-35	100.0
WP_077584891.1\|607996_608155_+\|holin	putative holin-like toxin	A0A0K2CYN9	Paenibacillus_phage	8.4e-21	100.0
WP_036653975.1\|608365_608917_-	DUF4352 domain-containing protein	A0A0K2CYG1	Paenibacillus_phage	3.4e-69	100.0
WP_036653977.1\|609140_609809_+	hypothetical protein	A0A0K2CYM6	Paenibacillus_phage	3.5e-108	100.0
WP_036653979.1\|609801_610317_+	accessory gene regulator B family protein	A0A0K2CZ30	Paenibacillus_phage	1.8e-88	100.0
WP_036653981.1\|610448_610805_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	A0A0K2CYP4	Paenibacillus_phage	1.0e-61	100.0
WP_152532805.1\|611040_611328_+	hypothetical protein	A0A0K2CYG5	Paenibacillus_phage	8.4e-35	98.7
WP_036653988.1\|611367_611703_-	transcriptional regulator	A0A0K2CYN0	Paenibacillus_phage	1.1e-54	100.0
WP_104932581.1\|611824_612874_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_024094299.1\|613007_613403_+	hypothetical protein	NA	NA	NA	NA
WP_024094298.1\|613434_613695_+	hypothetical protein	NA	NA	NA	NA
WP_023484652.1\|614081_615242_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_023484651.1\|615298_616234_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_023484649.1\|617593_619684_+	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	1.8e-110	40.9
WP_023484648.1\|619696_621025_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_036653992.1\|621203_621746_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_174567583.1\|621801_623310_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	2.4e-40	27.6
WP_024094289.1\|623344_624130_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_036653997.1\|624373_624784_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_024094288.1\|624787_625237_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_024094287.1\|625258_625573_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_024094286.1\|625674_627258_+	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_036653999.1\|627270_628287_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_036654005.1\|628279_629107_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_023484638.1\|629106_630426_+	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_023484637.1\|630436_630880_+	flagellar export protein FliJ	NA	NA	NA	NA
WP_024094283.1\|630905_631817_+	protein kinase PKN/PRK1, effector,flagellar motor switch protein FliG-like protein	NA	NA	NA	NA
WP_023484635.1\|631852_633256_+	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_052752953.1\|633291_633885_+	hypothetical protein	NA	NA	NA	NA
WP_023484724.1\|633881_634271_+	hypothetical protein	NA	NA	NA	NA
WP_024094279.1\|634359_635172_+	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_023484722.1\|635224_635446_+	flagellar FlbD family protein	NA	NA	NA	NA
WP_023484720.1\|635940_636939_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_023484719.1\|636928_638176_+	flagellar motor switch phosphatase FliY	NA	NA	NA	NA
WP_023483236.1\|638248_639472_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0

DBSCAN-SWA_5

802731 : 901519

Tupanvirus(28.57%)

transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104932533.1\|802731_803553_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.5e-39	50.3
WP_077584913.1\|803507_803681_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_042119576.1\|803862_804852_-	metallophosphoesterase	NA	NA	NA	NA
WP_077584914.1\|805224_806016_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_023484992.1\|806076_806721_+	YkyA family protein	NA	NA	NA	NA
WP_023484993.1\|806769_807333_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_036654120.1\|807590_808481_-	DUF3471 domain-containing protein	NA	NA	NA	NA
WP_024094172.1\|808996_809182_+	hypothetical protein	NA	NA	NA	NA
WP_096761293.1\|809756_809936_+\|transposase	transposase	NA	NA	NA	NA
WP_036654122.1\|812080_812596_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	1.2e-12	32.5
WP_096761125.1\|812663_813708_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_158673685.1\|813705_816489_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	2.5e-67	31.2
WP_077584917.1\|816510_819555_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.9e-76	24.7
WP_023483474.1\|819778_821440_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	5.0e-55	30.3
WP_077584918.1\|821904_827535_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.3e-98	27.5
WP_023484588.1\|827507_830336_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.0e-88	33.8
WP_051427813.1\|830425_830638_+	hypothetical protein	NA	NA	NA	NA
WP_036654129.1\|831129_831792_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA
WP_023484590.1\|831818_832700_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA
WP_023484592.1\|834418_834850_+	NfeD family protein	NA	NA	NA	NA
WP_023484593.1\|834853_835780_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_023484594.1\|835948_837226_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_023484595.1\|837483_838542_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_024094161.1\|841884_842367_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_023484599.1\|843761_844967_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_023484600.1\|844988_845984_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_036654131.1\|846004_846898_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_023484602.1\|846984_848514_+	fumarate hydratase	NA	NA	NA	NA
WP_024094156.1\|848743_849979_+	MFS transporter	NA	NA	NA	NA
WP_024094155.1\|850260_850425_+	GapA-binding peptide SR1P	NA	NA	NA	NA
WP_036656604.1\|850424_853118_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	2.3e-94	40.4
WP_023484605.1\|853210_853840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023484606.1\|853846_854650_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_024094152.1\|854820_856575_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-61	31.7
WP_023484608.1\|856636_857719_-	tyrosine recombinase XerS	A0A2R2ZGM9	Clostridioides_phage	3.9e-08	25.6
WP_023484609.1\|858304_860605_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_077584919.1\|862350_862926_-	hypothetical protein	NA	NA	NA	NA
WP_023484612.1\|863868_866517_+	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	4.0e-38	24.9
WP_036656608.1\|866624_867959_+	magnesium transporter	NA	NA	NA	NA
WP_036654146.1\|871760_872453_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.9e-46	41.7
WP_036656612.1\|872427_873882_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.1e-25	28.4
WP_024094142.1\|874190_875558_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_036654150.1\|876248_877079_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_040931545.1\|877471_877678_+	hypothetical protein	NA	NA	NA	NA
WP_024094139.1\|877732_878017_+	hypothetical protein	NA	NA	NA	NA
WP_023484621.1\|878222_879110_+	anion permease	NA	NA	NA	NA
WP_077584922.1\|879202_880612_-	MATE family efflux transporter	NA	NA	NA	NA
WP_036654154.1\|881632_882154_+	hypothetical protein	NA	NA	NA	NA
WP_051427815.1\|882186_882441_+	ABC transporter permease	NA	NA	NA	NA
WP_051427817.1\|882937_883243_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_023484627.1\|884442_884832_+	DoxX family protein	NA	NA	NA	NA
WP_023484628.1\|884998_885427_+	cell wall hydrolase	NA	NA	NA	NA
WP_023484630.1\|886915_887464_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024094129.1\|887841_888048_-	hypothetical protein	NA	NA	NA	NA
WP_040931540.1\|889154_889925_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-32	39.2
WP_096761262.1\|889911_891018_+	ABC transporter permease	NA	NA	NA	NA
WP_040931749.1\|891037_891865_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_036654158.1\|892222_892999_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_023483236.1\|893679_894903_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036654163.1\|895056_895329_+\|bacteriocin	bacteriocin biosynthesis protein	R9W0N4	Paenibacillus_phage	1.6e-30	94.7
WP_051427818.1\|895976_896219_+	hypothetical protein	A0A2I7SC00	Paenibacillus_phage	2.6e-29	91.2
WP_051427819.1\|896516_897062_-	hypothetical protein	NA	NA	NA	NA
WP_036654167.1\|897335_898694_+	hypothetical protein	A0A0K2CP77	Brevibacillus_phage	2.0e-73	34.7
WP_036654169.1\|899886_900393_+	hypothetical protein	R9VWV6	Paenibacillus_phage	8.5e-06	33.3
WP_104932616.1\|900474_901519_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9

DBSCAN-SWA_6

1373450 : 1443861

Paenibacillus_phage(91.78%)

tail,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023483236.1\|1373450_1374674_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_051427858.1\|1375320_1375503_+	hypothetical protein	NA	NA	NA	NA
WP_023483502.1\|1375968_1376352_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_023483501.1\|1376348_1377215_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-20	28.0
WP_023483500.1\|1377204_1377855_+	ABC-2 transporter permease	NA	NA	NA	NA
WP_023483497.1\|1379180_1379564_-	kinase-associated lipoprotein B	NA	NA	NA	NA
WP_023483496.1\|1379642_1379981_-	thioredoxin family protein	NA	NA	NA	NA
WP_023483495.1\|1380003_1380537_-	hypothetical protein	NA	NA	NA	NA
WP_036656763.1\|1380619_1382239_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	2.4e-54	27.9
WP_036654499.1\|1382269_1384183_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	6.4e-54	29.9
WP_036654503.1\|1384217_1385261_-	M42 family metallopeptidase	NA	NA	NA	NA
WP_036656764.1\|1385577_1385868_-	Dabb family protein	NA	NA	NA	NA
WP_023483491.1\|1385893_1387450_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.4e-53	28.3
WP_046655198.1\|1387589_1389332_-	FHA domain-containing protein	NA	NA	NA	NA
WP_077584987.1\|1390103_1390730_+	hypothetical protein	A0A0N9SJT2	Paenibacillus_phage	7.5e-36	59.0
WP_023484106.1\|1390903_1391329_+	hypothetical protein	NA	NA	NA	NA
WP_036654623.1\|1391375_1391726_+	hypothetical protein	A0A2I7SCF2	Paenibacillus_phage	2.5e-49	84.5
WP_046655200.1\|1392141_1392387_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023484108.1\|1392526_1393540_+	hypothetical protein	NA	NA	NA	NA
WP_036654626.1\|1393558_1393834_+	hypothetical protein	A0A0K2CZR1	Paenibacillus_phage	1.2e-19	60.9
WP_158225708.1\|1394056_1394695_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	9.1e-106	96.4
WP_051427866.1\|1394606_1394861_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	5.3e-41	100.0
WP_158225709.1\|1395256_1395694_-	hypothetical protein	A0A0N9S7V6	Paenibacillus_phage	8.8e-76	98.6
WP_167552494.1\|1395690_1397238_-\|tail	phage tail protein	A0A0N9SIL8	Paenibacillus_phage	1.7e-294	98.1
WP_167552495.1\|1397262_1398012_-\|tail	phage tail protein	A0A0N9SIL8	Paenibacillus_phage	1.9e-139	96.0
WP_023484113.1\|1398014_1399472_-\|tail	phage tail family protein	A0A0N9RRA9	Paenibacillus_phage	5.8e-281	96.3
WP_077584990.1\|1399473_1399998_-	hypothetical protein	A0A0N9SJR9	Paenibacillus_phage	1.2e-34	53.7
WP_158529819.1\|1400141_1401083_-	hypothetical protein	A0A0N9SJR9	Paenibacillus_phage	9.9e-08	27.0
WP_036654632.1\|1402393_1402771_-	hypothetical protein	A0A0N9RZB8	Paenibacillus_phage	5.3e-21	72.0
WP_036654634.1\|1402743_1403121_-	hypothetical protein	A0A0N9SST2	Paenibacillus_phage	6.6e-56	92.8
WP_036654636.1\|1403123_1403381_-	hypothetical protein	A0A0K2CZ43	Paenibacillus_phage	8.1e-13	51.9
WP_036654638.1\|1403447_1404017_-	hypothetical protein	A0A0N9SHI3	Paenibacillus_phage	3.7e-66	70.5
WP_036654641.1\|1404029_1404404_-	hypothetical protein	A0A0N7GFE5	Paenibacillus_phage	1.6e-62	95.2
WP_036654643.1\|1404400_1404826_-	hypothetical protein	A0A0N9SJT1	Paenibacillus_phage	2.9e-68	90.8
WP_023484117.1\|1404822_1405155_-	hypothetical protein	A0A0N9RTI3	Paenibacillus_phage	4.1e-57	99.1
WP_036654646.1\|1405155_1405539_-	hypothetical protein	A0A0N9SGG4	Paenibacillus_phage	2.2e-62	94.5
WP_023484118.1\|1405553_1406489_-	hypothetical protein	A0A0N9S7T7	Paenibacillus_phage	2.7e-143	79.4
WP_023484119.1\|1406544_1407198_-	hypothetical protein	A0A0N9SIL0	Paenibacillus_phage	4.1e-61	81.0
WP_023484120.1\|1407285_1408149_-	hypothetical protein	A0A0N9SJR1	Paenibacillus_phage	3.8e-131	83.6
WP_036656796.1\|1408145_1409642_-\|portal	phage portal protein	A0A0N7GFE4	Paenibacillus_phage	4.9e-251	93.9
WP_036654649.1\|1411719_1411971_-	hypothetical protein	NA	NA	NA	NA
WP_023484124.1\|1412862_1413252_-	helix-turn-helix domain-containing protein	A0A0N7GFF5	Paenibacillus_phage	1.5e-66	100.0
WP_023484125.1\|1413241_1413661_-	hypothetical protein	A0A0N9SJZ8	Paenibacillus_phage	3.9e-73	95.7
WP_158225710.1\|1413662_1413830_-	hypothetical protein	A0A0N9RTP7	Paenibacillus_phage	6.6e-16	76.4
WP_036654652.1\|1413819_1414038_-	hypothetical protein	A0A0N9SGN2	Paenibacillus_phage	6.8e-29	94.4
WP_023483236.1\|1414218_1415442_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036654658.1\|1415738_1416131_-	hypothetical protein	NA	NA	NA	NA
WP_051427869.1\|1417327_1417780_-	hypothetical protein	A0A0N7GFF4	Paenibacillus_phage	1.4e-60	75.3
WP_051427870.1\|1417769_1418177_-	DUF134 domain-containing protein	A0A0N9RZI0	Paenibacillus_phage	8.5e-57	84.4
WP_023485385.1\|1418164_1419442_-	DNA (cytosine-5-)-methyltransferase	A0A1P8CX25	Bacillus_phage	1.5e-75	39.7
WP_023485386.1\|1419455_1420622_-	SAM-dependent DNA methyltransferase	A0A0N9ST12	Paenibacillus_phage	1.5e-234	100.0
WP_077584993.1\|1420748_1421132_+	hypothetical protein	A0A0N9SHP7	Paenibacillus_phage	1.4e-72	100.0
WP_036654664.1\|1421088_1421649_-	AAA family ATPase	A0A0N9SJZ0	Paenibacillus_phage	1.8e-105	100.0
WP_023485387.1\|1421632_1422508_-	hypothetical protein	A0A0N9RTN7	Paenibacillus_phage	2.0e-167	100.0
WP_036654666.1\|1422511_1422976_-	DUF4065 domain-containing protein	A0A0N9SGM1	Paenibacillus_phage	1.3e-88	100.0
WP_036654668.1\|1422969_1423287_-	hypothetical protein	A0A0N9S804	Paenibacillus_phage	1.3e-57	100.0
WP_051427871.1\|1423288_1423678_-	hypothetical protein	A0A0N7GFF3	Paenibacillus_phage	3.1e-72	100.0
WP_036654670.1\|1423692_1423914_-	hypothetical protein	A0A0N9SIR4	Paenibacillus_phage	8.4e-35	100.0
WP_155116291.1\|1423964_1424126_-	hypothetical protein	A0A0N9RRE2	Paenibacillus_phage	1.0e-26	100.0
WP_077585238.1\|1424155_1424596_-	hypothetical protein	A0A0N9SJY5	Paenibacillus_phage	7.8e-56	99.1
WP_040931725.1\|1424731_1424962_-	crossover junction endodeoxyribonuclease RuvC	A0A0N9ST03	Paenibacillus_phage	1.6e-36	100.0
WP_051427873.1\|1425239_1426259_-	hypothetical protein	A0A0N9SHN6	Paenibacillus_phage	1.1e-156	94.1
WP_023483062.1\|1426243_1426858_-	3'-5' exonuclease	A0A0N9SJX9	Paenibacillus_phage	4.1e-103	95.1
WP_036654676.1\|1426854_1427052_-	hypothetical protein	A0A0N7GFF2	Paenibacillus_phage	6.6e-31	100.0
WP_051427874.1\|1427052_1428225_-	DNA polymerase	A0A0N9RTM8	Paenibacillus_phage	6.8e-208	91.0
WP_036654678.1\|1428208_1428541_-	hypothetical protein	A0A0N9SGL0	Paenibacillus_phage	6.7e-52	86.4
WP_023483058.1\|1430339_1431149_-	hypothetical protein	A0A0N9SIQ5	Paenibacillus_phage	6.5e-109	76.9
WP_036654684.1\|1431354_1431768_-	hypothetical protein	A0A0N9RZF9	Paenibacillus_phage	6.6e-73	96.4
WP_036654686.1\|1431912_1432128_-	hypothetical protein	A0A0K2CZA1	Paenibacillus_phage	1.0e-24	80.6
WP_023483057.1\|1432300_1433038_-	hypothetical protein	A0A0N9SJW5	Paenibacillus_phage	8.2e-135	95.5
WP_036654689.1\|1433131_1433656_-	hypothetical protein	A0A0N9RTM1	Paenibacillus_phage	7.1e-56	69.5
WP_051427875.1\|1433718_1434282_-	hypothetical protein	A0A0N9SGJ9	Paenibacillus_phage	2.2e-87	96.8
WP_051427876.1\|1434334_1435285_-	toprim domain-containing protein	A0A0N9S7Y2	Paenibacillus_phage	4.9e-164	88.9
WP_023483055.1\|1435297_1436674_-	AAA family ATPase	A0A0N9SIP5	Paenibacillus_phage	1.1e-254	96.9
WP_023483054.1\|1436670_1437441_-	hypothetical protein	A0A0N7GFF0	Paenibacillus_phage	6.6e-143	95.3
WP_036654693.1\|1437448_1437715_-	hypothetical protein	A0A0N9RRC8	Paenibacillus_phage	2.7e-43	95.5
WP_036654695.1\|1437725_1438253_-	hypothetical protein	A0A0N9SJU7	Paenibacillus_phage	3.3e-77	83.4
WP_023483053.1\|1438390_1439233_-	DUF3102 domain-containing protein	A0A0N9RZE9	Paenibacillus_phage	8.4e-83	62.0
WP_051427877.1\|1439249_1439642_-	hypothetical protein	A0A0N9SSX1	Paenibacillus_phage	6.7e-59	90.8
WP_167552496.1\|1439601_1439904_-	hypothetical protein	A0A0N9SHL8	Paenibacillus_phage	4.9e-25	63.0
WP_036654698.1\|1440036_1440408_-	hypothetical protein	A0A0N9SJV6	Paenibacillus_phage	1.2e-17	39.8
WP_036656824.1\|1440646_1441033_-	helix-turn-helix domain-containing protein	A0A0N7GFE9	Paenibacillus_phage	9.0e-32	63.5
WP_155116298.1\|1441052_1441220_-	hypothetical protein	A0A0N9SIN5	Paenibacillus_phage	8.3e-19	90.6
WP_155116299.1\|1441216_1441393_-	hypothetical protein	NA	NA	NA	NA
WP_023483052.1\|1441414_1442041_-	hypothetical protein	A0A0K2CZL5	Paenibacillus_phage	1.9e-87	72.6
WP_036654702.1\|1442489_1442780_-	helix-turn-helix domain-containing protein	A0A2I7SC15	Paenibacillus_phage	5.3e-37	81.1
WP_036654705.1\|1442826_1443039_-	helix-turn-helix transcriptional regulator	A0A1X9I583	Streptococcus_phage	1.1e-12	61.7
WP_023483051.1\|1443207_1443861_+	helix-turn-helix domain-containing protein	A0A2I7SCV6	Paenibacillus_phage	1.7e-70	66.0

DBSCAN-SWA_7

1452647 : 1460104

Paenibacillus_phage(80.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023483042.1\|1452647_1453034_-	LytTR family transcriptional regulator	A0A0K2CYP4	Paenibacillus_phage	3.6e-25	50.0
WP_096761125.1\|1453243_1454288_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_036654716.1\|1454330_1454852_-	accessory gene regulator B family protein	A0A0K2CZ30	Paenibacillus_phage	6.2e-20	40.5
WP_144029498.1\|1454802_1455138_-	hypothetical protein	A0A0K2CYM6	Paenibacillus_phage	1.2e-13	44.6
WP_036654721.1\|1455743_1456199_+	hypothetical protein	A0A0C5AER4	Bacteriophage	1.9e-20	40.2
WP_077584997.1\|1456419_1456506_-\|holin	putative holin-like toxin	A0A0K2CZR6	Paenibacillus_phage	2.0e-05	100.0
WP_036654725.1\|1456660_1456876_-	helix-turn-helix transcriptional regulator	A0A2I7SC05	Paenibacillus_phage	4.5e-33	98.6
WP_024094464.1\|1457330_1457522_+	hypothetical protein	A0A2I7SC20	Paenibacillus_phage	1.6e-29	98.4
WP_036654728.1\|1457518_1457788_+	hypothetical protein	A0A2I7SC25	Paenibacillus_phage	7.6e-38	97.7
WP_036654730.1\|1458355_1458835_-	ETX/MTX2 family pore-forming toxin	NA	NA	NA	NA
WP_023483236.1\|1458880_1460104_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0

DBSCAN-SWA_8

1500248 : 1509328

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023484756.1\|1500248_1500638_+	hypothetical protein	A0A0K2CZD8	Paenibacillus_phage	6.5e-06	49.3
WP_077585001.1\|1501655_1502180_+	hypothetical protein	NA	NA	NA	NA
WP_024094463.1\|1503184_1503406_-	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	3.8e-11	44.4
WP_024094464.1\|1503902_1504094_+	hypothetical protein	A0A2I7SC20	Paenibacillus_phage	1.6e-29	98.4
WP_036654728.1\|1504090_1504360_+	hypothetical protein	A0A2I7SC25	Paenibacillus_phage	7.6e-38	97.7
WP_036654753.1\|1504363_1504576_+	hypothetical protein	A0A2I7SC04	Paenibacillus_phage	8.4e-24	78.8
WP_036654757.1\|1504912_1505461_-	hypothetical protein	A0A0C5AEH5	Bacteriophage	1.3e-73	81.4
WP_036654758.1\|1505797_1506298_-	hypothetical protein	R9VWV6	Paenibacillus_phage	7.1e-05	31.7
WP_096761125.1\|1506891_1507936_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_024094469.1\|1508469_1508880_+	helix-turn-helix transcriptional regulator	F8J1E0	Lactobacillus_phage	6.6e-09	38.8
WP_024094470.1\|1508911_1509328_+	ImmA/IrrE family metallo-endopeptidase	A0A2P1JU12	Anoxybacillus_phage	4.6e-18	37.0

DBSCAN-SWA_9

1649523 : 1731320

100

Paenibacillus_phage(35.0%)

tRNA,portal,plate,tail,integrase,protease,bacteriocin,capsid,terminase

attL 1660941:1660956|attR 1734034:1734049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036654813.1\|1649523_1650873_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_024094559.1\|1650875_1651643_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_023483648.1\|1651810_1652488_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_036654815.1\|1652496_1653465_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_024094561.1\|1654067_1654208_-	YfhD family protein	NA	NA	NA	NA
WP_023483645.1\|1654358_1655480_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.2e-29	34.3
WP_036654816.1\|1655635_1657489_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.2e-143	49.2
WP_023483643.1\|1657545_1658145_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_024094564.1\|1658267_1659299_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_096761271.1\|1659342_1659789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042119652.1\|1659878_1660295_-	N-acetyltransferase	NA	NA	NA	NA
WP_023483639.1\|1660437_1661589_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
1660941:1660956	attL	NA	NA	NA	NA
WP_023483638.1\|1661669_1663484_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	4.4e-20	23.7
WP_023483637.1\|1663560_1664004_-	hypothetical protein	NA	NA	NA	NA
WP_036656515.1\|1664040_1665237_-	stage II sporulation protein P	NA	NA	NA	NA
WP_024094568.1\|1665438_1666434_-	GPR endopeptidase	NA	NA	NA	NA
WP_036656512.1\|1666619_1666892_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_036656508.1\|1666990_1668016_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_036656506.1\|1668347_1668584_-	hypothetical protein	NA	NA	NA	NA
WP_036656505.1\|1668613_1669372_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_024094571.1\|1670439_1671114_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-31	38.5
WP_023483629.1\|1671125_1673633_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_144029639.1\|1673746_1674028_-	hypothetical protein	NA	NA	NA	NA
WP_144029638.1\|1674040_1674319_-	hypothetical protein	M1PSD2	Streptococcus_phage	2.7e-14	54.2
WP_077585009.1\|1675752_1677315_-	peptidase M4 family protein	NA	NA	NA	NA
WP_046655328.1\|1678130_1678826_+	hypothetical protein	A0A0C5AN10	Bacteriophage	2.0e-82	68.7
WP_023483534.1\|1678828_1679578_+	DUF4065 domain-containing protein	A0A0C5ABL3	Bacteriophage	5.1e-92	67.5
WP_024094406.1\|1680387_1680939_+	hypothetical protein	NA	NA	NA	NA
WP_024094407.1\|1681140_1681623_-	SocA family protein	A0A0N9SGM1	Paenibacillus_phage	1.4e-26	41.3
WP_051428031.1\|1681871_1682939_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.2e-48	33.9
WP_023484263.1\|1683193_1685473_-	S8 family peptidase	NA	NA	NA	NA
WP_023484264.1\|1685492_1686605_-	AAA family ATPase	A0A1S5V1G7	Saudi_moumouvirus	1.5e-15	28.8
WP_036656497.1\|1686917_1687160_-	hypothetical protein	A0A0K2CZD0	Paenibacillus_phage	4.3e-32	97.4
WP_024094412.1\|1687172_1687451_-	hypothetical protein	R9VWV2	Paenibacillus_phage	4.2e-39	80.6
WP_024094413.1\|1687468_1687933_-	hypothetical protein	A0A0K2CZJ8	Paenibacillus_phage	6.9e-63	71.4
WP_036656495.1\|1688616_1688856_-\|bacteriocin	bacteriocin biosynthesis protein	R9W0N4	Paenibacillus_phage	1.1e-35	98.7
WP_155116215.1\|1688890_1689049_-	hypothetical protein	NA	NA	NA	NA
WP_024094417.1\|1689041_1689437_-	hypothetical protein	NA	NA	NA	NA
WP_024094418.1\|1689449_1690853_-	kelch-like protein	S5MNY5	Brevibacillus_phage	5.4e-10	37.5
WP_024094419.1\|1690856_1691135_-	hypothetical protein	NA	NA	NA	NA
WP_023484987.1\|1691131_1691695_-	DUF2313 domain-containing protein	S5MA71	Brevibacillus_phage	1.8e-36	46.9
WP_036656489.1\|1691705_1692782_-\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	6.0e-102	51.8
WP_023485211.1\|1692774_1693185_-	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	2.7e-26	45.5
WP_023485210.1\|1693187_1693430_-	DUF2577 domain-containing protein	A0A0A8WJ65	Clostridium_phage	1.4e-11	42.7
WP_023485209.1\|1693429_1694413_-	hypothetical protein	S5MNC9	Brevibacillus_phage	9.7e-107	56.2
WP_023485208.1\|1694417_1695056_-	LysM peptidoglycan-binding domain-containing protein	S5MUH0	Brevibacillus_phage	6.4e-51	49.1
WP_036656487.1\|1695052_1697161_-	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	2.1e-143	42.5
WP_024094427.1\|1697214_1697385_-	hypothetical protein	NA	NA	NA	NA
WP_023485206.1\|1697384_1697810_-	hypothetical protein	X5JAB6	Clostridium_phage	1.6e-26	44.8
WP_023485204.1\|1698301_1699633_-\|tail	phage tail sheath family protein	A0A0A7RTT5	Clostridium_phage	4.2e-113	48.4
WP_036656485.1\|1699633_1699816_-	hypothetical protein	NA	NA	NA	NA
WP_023485203.1\|1699808_1700219_-	hypothetical protein	S5MUN8	Brevibacillus_phage	7.8e-26	46.8
WP_023485202.1\|1700215_1700626_-	HK97 gp10 family phage protein	A0A0A7RTT0	Clostridium_phage	1.8e-38	56.6
WP_023485201.1\|1700625_1700985_-	hypothetical protein	S5M673	Brevibacillus_phage	6.4e-32	54.7
WP_036656482.1\|1700986_1701355_-	hypothetical protein	S5MP25	Brevibacillus_phage	2.1e-30	55.8
WP_024094434.1\|1701341_1701575_-	hypothetical protein	NA	NA	NA	NA
WP_023485200.1\|1701586_1702633_-\|capsid	major capsid protein	A0A0K2CP76	Brevibacillus_phage	5.4e-172	87.2
WP_036656480.1\|1702648_1703005_-	hypothetical protein	A0A0K2CNR0	Brevibacillus_phage	1.8e-42	73.3
WP_036656478.1\|1703019_1703643_-	phage scaffolding protein	A0A0K2CP96	Brevibacillus_phage	1.0e-61	59.8
WP_023485197.1\|1703680_1704700_-\|capsid	minor capsid protein	S5MTV5	Brevibacillus_phage	1.3e-109	57.6
WP_023485196.1\|1704696_1706160_-\|portal	phage portal protein	A0A0K2CNK4	Brevibacillus_phage	8.1e-166	59.3
WP_023485195.1\|1706175_1707447_-\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	9.5e-163	65.7
WP_023485194.1\|1707439_1708180_-\|terminase	phage-related terminase-like protein small subunit	A0A2H4J4R0	uncultured_Caudovirales_phage	1.4e-44	47.5
WP_024093566.1\|1708677_1708881_-	hypothetical protein	A0A0K2CZA1	Paenibacillus_phage	2.9e-26	89.6
WP_077585010.1\|1709002_1709536_-	RNA polymerase subunit sigma-24	A0A0K2CNQ1	Brevibacillus_phage	2.3e-46	59.6
WP_155116272.1\|1709522_1709693_-	hypothetical protein	NA	NA	NA	NA
WP_023485192.1\|1710155_1710464_-	hypothetical protein	NA	NA	NA	NA
WP_077585242.1\|1710557_1711223_-	site-specific DNA-methyltransferase	A0A1D8KTH4	Synechococcus_phage	3.2e-61	52.0
WP_023485190.1\|1711297_1711819_-	hypothetical protein	NA	NA	NA	NA
WP_024093562.1\|1711833_1712199_-	hypothetical protein	A0A0K2CZ58	Paenibacillus_phage	1.5e-57	86.0
WP_036656474.1\|1712389_1712764_-	RusA family crossover junction endodeoxyribonuclease	A0A0K2CYQ8	Paenibacillus_phage	2.6e-44	66.9
WP_036656473.1\|1712765_1712975_-	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	5.0e-29	86.8
WP_024093557.1\|1713804_1714692_-	DnaD domain protein	A0A0K2CY85	Paenibacillus_phage	8.1e-153	100.0
WP_024093556.1\|1714740_1715073_-	hypothetical protein	A0A0K2CY25	Paenibacillus_phage	5.3e-57	98.2
WP_023485307.1\|1715088_1715901_-	PD-(D/E)XK nuclease-like domain-containing protein	R9TMF6	Paenibacillus_phage	2.0e-110	68.5
WP_023485306.1\|1715881_1716706_-	hypothetical protein	A0A0A7S0A9	Clostridium_phage	1.9e-87	62.8
WP_023485305.1\|1716709_1718338_-	hypothetical protein	R9TQJ2	Paenibacillus_phage	3.8e-225	76.6
WP_024093553.1\|1718407_1718986_-\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	1.2e-24	41.2
WP_023485303.1\|1718982_1719414_-	hypothetical protein	A0A0K2CYQ7	Paenibacillus_phage	1.9e-06	53.7
WP_024093551.1\|1719421_1719685_-	hypothetical protein	A0A0K2CZE9	Paenibacillus_phage	2.2e-13	56.3
WP_036656470.1\|1719721_1719913_-	hypothetical protein	NA	NA	NA	NA
WP_036656467.1\|1720078_1720762_-	ORF6N domain-containing protein	A0A2I7SCV5	Paenibacillus_phage	1.6e-55	73.8
WP_024093548.1\|1720758_1720947_-	hypothetical protein	NA	NA	NA	NA
WP_023485301.1\|1720982_1721291_-	hypothetical protein	NA	NA	NA	NA
WP_024093547.1\|1721287_1722043_-	phage antirepressor KilAC domain-containing protein	A0A0C5AEJ9	Bacteriophage	1.5e-107	76.5
WP_155116273.1\|1722071_1722236_-	hypothetical protein	NA	NA	NA	NA
WP_023485299.1\|1722265_1722499_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	S5MA41	Brevibacillus_phage	5.8e-18	49.3
WP_036656465.1\|1722636_1722858_-	hypothetical protein	R9W0P6	Paenibacillus_phage	1.6e-30	90.4
WP_042118685.1\|1722854_1723232_-	hypothetical protein	R9VW30	Paenibacillus_phage	3.8e-59	89.6
WP_036656462.1\|1723331_1723589_+	hypothetical protein	NA	NA	NA	NA
WP_024093542.1\|1723565_1723826_-	hypothetical protein	NA	NA	NA	NA
WP_077585011.1\|1723841_1724102_-	helix-turn-helix domain-containing protein	A0A0K2CZS5	Paenibacillus_phage	1.5e-35	85.9
WP_077585012.1\|1724034_1724859_-	phage antirepressor KilAC domain-containing protein	A0A0C5AFE7	Paenibacillus_phage	1.1e-130	94.7
WP_077585243.1\|1724998_1725103_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158225787.1\|1725103_1725208_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023483881.1\|1725482_1726208_+	helix-turn-helix transcriptional regulator	Q786F1	Bacillus_phage	1.5e-11	42.2
WP_023483880.1\|1726275_1727508_+\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	4.8e-180	75.1
WP_051428029.1\|1727519_1729433_-	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_077585013.1\|1729507_1730002_-	dCMP deaminase family protein	A0A222YXY3	Mycobacterium_phage	3.3e-23	44.9
WP_036656460.1\|1730027_1731320_-	homocysteine synthase	A0A0B5JD48	Pandoravirus	8.5e-18	27.8
1734034:1734049	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1927586 : 2058461

155

Paenibacillus_phage(65.98%)

head,portal,tail,integrase,protease,holin,transposase,bacteriocin,capsid,terminase

attL 1950774:1950833|attR 2057324:2058492

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046655163.1\|1927586_1929305_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	3.6e-16	25.1
WP_052304436.1\|1929520_1930228_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_023484289.1\|1930278_1931400_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_023484290.1\|1931504_1932764_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.5e-149	65.0
WP_036656352.1\|1932779_1933370_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.2e-56	56.1
WP_023484292.1\|1933534_1934836_-	trigger factor	NA	NA	NA	NA
WP_046655164.1\|1935014_1935917_-	hypothetical protein	NA	NA	NA	NA
WP_023484294.1\|1936047_1937268_-	CapA family protein	A0A2H4J5Z6	uncultured_Caudovirales_phage	4.8e-55	33.9
WP_024094793.1\|1937494_1937608_-	DUF4023 family protein	NA	NA	NA	NA
WP_024094794.1\|1937662_1939177_-	PH domain-containing protein	NA	NA	NA	NA
WP_036656348.1\|1939169_1939646_-	PH domain-containing protein	NA	NA	NA	NA
WP_024094796.1\|1939811_1940165_-	hypothetical protein	NA	NA	NA	NA
WP_023484298.1\|1940453_1942298_+	asparagine synthase (glutamine-hydrolyzing)	L7RC73	Acanthamoeba_polyphaga_moumouvirus	9.9e-28	24.7
WP_023484299.1\|1942365_1942998_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_023484300.1\|1942984_1943740_-	ribonuclease PH	NA	NA	NA	NA
WP_023484301.1\|1944075_1945107_-	GerMN domain-containing protein	NA	NA	NA	NA
WP_036656345.1\|1945343_1945859_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	8.5e-38	53.6
WP_023484303.1\|1945970_1946780_+	MFS transporter	NA	NA	NA	NA
WP_036656341.1\|1947010_1947193_-	hypothetical protein	NA	NA	NA	NA
WP_036656340.1\|1947941_1948415_+	hypothetical protein	A0A0C5AER4	Bacteriophage	9.6e-36	69.1
WP_077585032.1\|1948516_1948654_-	helix-turn-helix transcriptional regulator	A0A2I7SC34	Paenibacillus_phage	7.0e-16	90.9
WP_023484983.1\|1948786_1949059_-	barstar family protein	NA	NA	NA	NA
WP_077585246.1\|1949072_1949819_-	hypothetical protein	NA	NA	NA	NA
WP_077585033.1\|1950138_1950750_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
1950774:1950833	attL	NA	NA	NA	NA
WP_104932612.1\|1950866_1951911_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_158225777.1\|1951934_1952111_-	hypothetical protein	NA	NA	NA	NA
WP_167552501.1\|1953701_1953860_-	hypothetical protein	A0A2H4J054	uncultured_Caudovirales_phage	7.4e-09	58.7
WP_152659182.1\|1953859_1954843_-	hypothetical protein	A0A0C5AEQ0	Bacteriophage	7.1e-49	75.9
WP_155116279.1\|1955178_1955346_+	hypothetical protein	NA	NA	NA	NA
WP_023485248.1\|1955568_1955883_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_023485249.1\|1955882_1956224_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_023485250.1\|1956291_1956873_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_023483154.1\|1957252_1957732_+	hypothetical protein	A0A0K2CZD8	Paenibacillus_phage	7.6e-81	99.4
WP_077584997.1\|1958055_1958142_-\|holin	putative holin-like toxin	A0A0K2CZR6	Paenibacillus_phage	2.0e-05	100.0
WP_077585034.1\|1958300_1958453_-	Arc family DNA-binding protein	A0A0K2CZC4	Paenibacillus_phage	5.8e-19	100.0
WP_036656321.1\|1958866_1959085_+	hypothetical protein	A0A0K2CZK3	Paenibacillus_phage	6.8e-37	100.0
WP_158225779.1\|1959062_1959236_+	hypothetical protein	A0A0K2CZV9	Paenibacillus_phage	5.6e-26	100.0
WP_036656319.1\|1959314_1959587_+	hypothetical protein	A0A0K2CZR1	Paenibacillus_phage	3.3e-41	100.0
WP_036656316.1\|1959600_1959873_+	hypothetical protein	A0A0K2CZB9	Paenibacillus_phage	4.3e-49	100.0
WP_036656314.1\|1959955_1960135_-	hypothetical protein	A0A0K2CZ50	Paenibacillus_phage	7.1e-24	98.3
WP_036656312.1\|1960278_1960518_-	hypothetical protein	A0A0K2CZD0	Paenibacillus_phage	1.0e-33	100.0
WP_077585248.1\|1960738_1961407_-	N-acetylmuramoyl-L-alanine amidase	A0A0K2CZQ6	Paenibacillus_phage	2.4e-133	100.0
WP_036656310.1\|1961406_1961637_-\|bacteriocin	bacteriocin biosynthesis protein	A0A0K2CZB4	Paenibacillus_phage	2.0e-34	100.0
WP_167552488.1\|1961617_1961779_-	hypothetical protein	A0A0K2CZ44	Paenibacillus_phage	8.8e-26	100.0
WP_036656307.1\|1961775_1962117_-	hypothetical protein	A0A0K2CZC5	Paenibacillus_phage	9.9e-59	100.0
WP_051428011.1\|1962126_1963200_-	hypothetical protein	A0A0K2CZJ3	Paenibacillus_phage	7.1e-212	99.7
WP_023484575.1\|1963205_1964324_-	siphovirus ReqiPepy6 Gp37-like family protein	A0A0K2CZQ1	Paenibacillus_phage	2.0e-212	100.0
WP_023484576.1\|1964326_1965193_-\|tail	phage tail family protein	A0A0K2CZA8	Paenibacillus_phage	4.0e-165	100.0
WP_077584889.1\|1965193_1968520_-\|tail	phage tail tape measure protein	A0A0K2CYK9	Paenibacillus_phage	4.3e-308	100.0
WP_077584888.1\|1968465_1968897_-	hypothetical protein	A0A2I7SBZ5	Paenibacillus_phage	5.3e-49	94.6
WP_023484578.1\|1969130_1969502_-	hypothetical protein	A0A0K2CZI8	Paenibacillus_phage	2.9e-64	100.0
WP_046655268.1\|1969573_1970170_-	hypothetical protein	A0A0K2CZP8	Paenibacillus_phage	3.9e-111	100.0
WP_036656304.1\|1970205_1970535_-	hypothetical protein	A0A0K2CZA4	Paenibacillus_phage	4.4e-56	100.0
WP_036656302.1\|1970531_1970924_-	HK97 gp10 family phage protein	A0A0K2CZ33	Paenibacillus_phage	4.3e-66	100.0
WP_023484581.1\|1970920_1971241_-\|head	phage head closure protein	A0A0K2CZB5	Paenibacillus_phage	3.0e-57	100.0
WP_036656301.1\|1971237_1971501_-\|head,tail	phage gp6-like head-tail connector protein	A0A0K2CZI4	Paenibacillus_phage	4.2e-41	100.0
WP_023484582.1\|1971626_1972769_-\|capsid	phage major capsid protein	A0A0K2CZ99	Paenibacillus_phage	6.6e-208	99.5
WP_046655269.1\|1972765_1973482_-\|protease	Clp protease ClpP	A0A0K2CZ28	Paenibacillus_phage	1.1e-131	100.0
WP_036656297.1\|1973471_1974707_-\|portal	phage portal protein	A0A0K2CZB0	Paenibacillus_phage	3.5e-239	99.8
WP_077584887.1\|1974721_1976446_-\|terminase	terminase large subunit	A0A0K2CZH9	Paenibacillus_phage	0.0e+00	100.0
WP_023484127.1\|1976426_1976741_-\|terminase	P27 family phage terminase small subunit	A0A0K2CZ94	Paenibacillus_phage	1.6e-50	100.0
WP_036656294.1\|1976844_1977189_-	HNH endonuclease	A0A0K2CZA0	Paenibacillus_phage	4.3e-62	100.0
WP_023484460.1\|1977200_1977551_-	hypothetical protein	A0A0K2CZA6	Paenibacillus_phage	9.5e-65	100.0
WP_036656290.1\|1977784_1978057_-	hypothetical protein	A0A0K2CZP5	Paenibacillus_phage	5.9e-46	100.0
WP_036657636.1\|1978105_1978459_-	toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	4.4e-62	100.0
WP_036656288.1\|1978505_1978730_-	type II toxin-antitoxin system HicA family toxin	A0A0K2CZG8	Paenibacillus_phage	1.0e-35	100.0
WP_036656285.1\|1978793_1979000_-	hypothetical protein	A0A0K2CZA1	Paenibacillus_phage	2.0e-30	100.0
WP_036656282.1\|1979174_1979798_-	RNA polymerase subunit sigma-24	NA	NA	NA	NA
WP_046655221.1\|1979763_1979973_-	DUF3310 domain-containing protein	A0A291LBF7	Klebsiella_phage	4.2e-12	56.9
WP_023484462.1\|1980007_1981399_-	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	3.3e-169	63.5
WP_036656280.1\|1981395_1981674_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	6.2e-19	51.1
WP_023484463.1\|1981959_1984287_-	hypothetical protein	S5M5Y2	Brevibacillus_phage	1.1e-294	61.8
WP_036656278.1\|1984306_1984897_-	hypothetical protein	B6V303	Bacillus_phage	2.8e-08	26.8
WP_036656275.1\|1984918_1985434_-	hypothetical protein	A0A2H4J8I5	uncultured_Caudovirales_phage	1.2e-20	41.4
WP_036656273.1\|1985448_1985649_-	hypothetical protein	NA	NA	NA	NA
WP_158225724.1\|1985699_1985858_-	hypothetical protein	NA	NA	NA	NA
WP_036656271.1\|1985854_1986067_-	hypothetical protein	NA	NA	NA	NA
WP_051428009.1\|1986056_1986443_-	hypothetical protein	A0A0C5AET7	Bacteriophage	2.1e-57	80.3
WP_036656266.1\|1986664_1986997_-	hypothetical protein	A0A0C5JZC6	Enterococcus_phage	2.0e-11	42.7
WP_036656265.1\|1987043_1987226_-	hypothetical protein	A0A0K2CYS1	Paenibacillus_phage	5.7e-21	81.7
WP_036656262.1\|1987243_1989208_-	XRE family transcriptional regulator	S5M5X4	Brevibacillus_phage	3.9e-224	59.1
WP_023484466.1\|1989275_1989875_-	DUF2815 family protein	A0A2I7QIM8	Bacillus_phage	3.3e-57	58.3
WP_023484467.1\|1989880_1991068_-	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	5.1e-102	49.5
WP_023484468.1\|1991064_1991451_-	hypothetical protein	NA	NA	NA	NA
WP_036656261.1\|1991456_1991648_-	hypothetical protein	NA	NA	NA	NA
WP_023484469.1\|1991790_1992045_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	2.5e-38	93.8
WP_036656259.1\|1992041_1992392_-	hypothetical protein	A0A0K2CZG5	Paenibacillus_phage	1.6e-48	100.0
WP_036657628.1\|1992410_1992632_-	hypothetical protein	A0A0K2CZM7	Paenibacillus_phage	3.8e-35	100.0
WP_023484470.1\|1992640_1993339_-	DNA cytosine methyltransferase	A0A0K2CZT5	Paenibacillus_phage	8.1e-124	100.0
WP_036656257.1\|1993345_1993561_-	hypothetical protein	A0A0K2CZE9	Paenibacillus_phage	2.7e-30	98.6
WP_155116251.1\|1993843_1994002_-	hypothetical protein	A0A0K2CZG0	Paenibacillus_phage	5.1e-18	100.0
WP_036656256.1\|1994016_1994256_-	hypothetical protein	A0A0K2CZM3	Paenibacillus_phage	8.2e-36	100.0
WP_036656254.1\|1994261_1994651_-	hypothetical protein	A0A0K2CZT2	Paenibacillus_phage	3.0e-67	100.0
WP_036656252.1\|1994666_1994855_-	hypothetical protein	A0A0K2CZE4	Paenibacillus_phage	5.3e-30	100.0
WP_040931267.1\|1994847_1995081_-	hypothetical protein	A0A0K2CZ76	Paenibacillus_phage	2.8e-36	100.0
WP_036656248.1\|1995115_1995334_-	hypothetical protein	A0A0K2CZF4	Paenibacillus_phage	7.0e-34	100.0
WP_051428008.1\|1995356_1995629_-	hypothetical protein	A0A0K2CZL9	Paenibacillus_phage	2.2e-45	100.0
WP_155116250.1\|1995612_1995756_-	hypothetical protein	A0A0K2CZS8	Paenibacillus_phage	1.5e-21	97.9
WP_036656245.1\|1995763_1996021_-	hypothetical protein	A0A0K2CZE0	Paenibacillus_phage	8.3e-42	100.0
WP_036656244.1\|1996145_1996361_-	hypothetical protein	A0A0K2CZE8	Paenibacillus_phage	1.6e-30	100.0
WP_051428007.1\|1996383_1997022_-	hypothetical protein	A0A0K2CZL5	Paenibacillus_phage	1.3e-128	100.0
WP_036656242.1\|1997037_1997331_-	helix-turn-helix domain-containing protein	A0A0K2CZS5	Paenibacillus_phage	4.4e-47	100.0
WP_023483804.1\|1997327_1998092_-	Rha family transcriptional regulator	A0A0K2CZD5	Paenibacillus_phage	7.5e-131	100.0
WP_023484952.1\|1998088_1998478_-	hypothetical protein	A0A0K2CZ66	Paenibacillus_phage	1.2e-68	100.0
WP_023484953.1\|1998497_1999322_-	hypothetical protein	A0A0K2CZE3	Paenibacillus_phage	4.6e-150	100.0
WP_036656239.1\|1999547_1999784_-	helix-turn-helix transcriptional regulator	A0A0K2CZL1	Paenibacillus_phage	7.4e-37	100.0
WP_051428006.1\|1999894_2000578_+	helix-turn-helix transcriptional regulator	A0A0K2CZS1	Paenibacillus_phage	7.9e-124	99.6
WP_046655220.1\|2000583_2001063_+	hypothetical protein	A0A0K2CZC9	Paenibacillus_phage	4.4e-89	100.0
WP_023484955.1\|2001117_2002359_+\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	6.5e-241	99.8
WP_023484956.1\|2002610_2003594_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_023484957.1\|2003603_2004338_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_036657613.1\|2004842_2005787_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_023483236.1\|2006036_2007260_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_051428005.1\|2007997_2008456_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_077585035.1\|2008957_2009176_-	hypothetical protein	NA	NA	NA	NA
WP_052304415.1\|2009521_2009716_+	hypothetical protein	NA	NA	NA	NA
WP_077585036.1\|2009786_2011382_+	hypothetical protein	A0A126FC74	Lonomia_obliqua_multiple_nucleopolyhedrovirus	2.5e-35	26.4
WP_077585037.1\|2011451_2013221_+	hypothetical protein	NA	NA	NA	NA
WP_036656234.1\|2013575_2014481_+\|integrase	tyrosine-type recombinase/integrase	A0A0A7AR08	Bacillus_phage	3.5e-87	55.5
WP_023483458.1\|2014890_2015097_+	cold-shock protein	Q9AZD3	Lactococcus_phage	4.6e-19	64.6
WP_036656232.1\|2015197_2015476_+	HU family DNA-binding protein	M4SRV7	Rhodobacter_phage	7.2e-07	38.3
WP_023482516.1\|2016139_2016778_+	hemolysin III family protein	NA	NA	NA	NA
WP_024094813.1\|2018621_2018846_-	response regulator transcription factor	A0A290GJH9	Caldibacillus_phage	3.7e-14	70.5
WP_023482898.1\|2018986_2020297_-	purine/pyrimidine permease	NA	NA	NA	NA
WP_024094816.1\|2021348_2022050_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_024094817.1\|2022465_2023332_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_023482894.1\|2023415_2024252_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_167552502.1\|2024238_2024964_-	glycosyltransferase	NA	NA	NA	NA
WP_036656899.1\|2025258_2026035_-	glycosyltransferase	NA	NA	NA	NA
WP_077585039.1\|2026106_2027123_+	GDP-mannose 4,6-dehydratase	M4QPK0	Synechococcus_phage	1.0e-34	35.2
WP_023482890.1\|2027204_2027924_-	glycosyltransferase	K7Z8A5	Megavirus	1.2e-10	23.6
WP_023482889.1\|2027931_2028837_-	NAD-dependent epimerase/dehydratase family protein	A0A291LAD7	Escherichia_phage	1.2e-15	25.7
WP_024094822.1\|2028833_2029664_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_023482887.1\|2029660_2030647_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	4.2e-41	33.7
WP_023482886.1\|2030636_2031731_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	1.9e-87	44.4
WP_051427894.1\|2031727_2033188_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_023482884.1\|2033461_2033833_-	hypothetical protein	NA	NA	NA	NA
WP_036654842.1\|2033832_2034969_-	glycosyltransferase	NA	NA	NA	NA
WP_023482882.1\|2034943_2036134_-	glycosyltransferase	NA	NA	NA	NA
WP_023482881.1\|2036130_2036853_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	3.2e-46	40.9
WP_152532822.1\|2037107_2041637_-\|tail	WIAG-tail domain	NA	NA	NA	NA
WP_036654844.1\|2041528_2044936_-	hypothetical protein	NA	NA	NA	NA
WP_036654846.1\|2045063_2045402_-	L,D-transpeptidase	NA	NA	NA	NA
WP_023482877.1\|2045544_2046711_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_023482876.1\|2047050_2047833_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_042119178.1\|2048386_2048989_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_104932543.1\|2049306_2050176_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	2.2e-134	98.7
WP_077585040.1\|2050196_2050880_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.5e-119	96.9
WP_023483333.1\|2050985_2051465_-	GAF domain-containing protein	NA	NA	NA	NA
WP_023483332.1\|2051530_2052325_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023483331.1\|2052328_2053768_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_023483330.1\|2054086_2055379_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_023483329.1\|2055480_2056401_-	glycosyl hydrolase lipoprotein-like protein	NA	NA	NA	NA
WP_036654854.1\|2056673_2057273_-	hypothetical protein	NA	NA	NA	NA
WP_104932612.1\|2057416_2058461_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
2057324:2058492	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2125661 : 2252582

105

Paenibacillus_phage(39.13%)

tRNA,integrase,transposase,holin,coat

attL 2147279:2147296|attR 2235489:2235505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023483267.1\|2125661_2126033_-\|holin	CidA/LrgA family holin-like protein	NA	NA	NA	NA
WP_036654876.1\|2126155_2127049_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_051427899.1\|2127424_2127982_-	hypothetical protein	NA	NA	NA	NA
WP_036654878.1\|2128092_2129241_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_036654880.1\|2129268_2129508_-	hypothetical protein	NA	NA	NA	NA
WP_155116295.1\|2129530_2129683_-	hypothetical protein	NA	NA	NA	NA
WP_023483263.1\|2129801_2130944_+	MFS transporter	NA	NA	NA	NA
WP_023483262.1\|2131147_2131498_+	ribonuclease-like protein	NA	NA	NA	NA
WP_023483261.1\|2131499_2132141_-	SCO family protein	NA	NA	NA	NA
WP_096761322.1\|2132231_2133158_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_023483259.1\|2133402_2134596_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-11	24.3
WP_023483258.1\|2134605_2135415_-	cache domain-containing protein	NA	NA	NA	NA
WP_158529834.1\|2136175_2136502_+\|coat	spore coat protein GerQ	NA	NA	NA	NA
WP_155116366.1\|2136609_2136765_-	hypothetical protein	NA	NA	NA	NA
WP_036654885.1\|2136906_2137890_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_023483255.1\|2138026_2138251_-	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	5.6e-10	47.8
WP_036654887.1\|2138628_2139615_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_051427900.1\|2139993_2141412_-	cobyrinate a,c-diamide synthase	NA	NA	NA	NA
WP_036654889.1\|2141624_2142263_-	ribonuclease H family protein	NA	NA	NA	NA
WP_036654891.1\|2142857_2143172_-	hypothetical protein	NA	NA	NA	NA
WP_023483236.1\|2143622_2144846_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036654894.1\|2145250_2146813_-	peptidase M4 family protein	NA	NA	NA	NA
2147279:2147296	attL	NA	NA	NA	NA
WP_046655328.1\|2147628_2148324_+	hypothetical protein	A0A0C5AN10	Bacteriophage	2.0e-82	68.7
2147279:2147296	attL	NA	NA	NA	NA
WP_023483534.1\|2148326_2149076_+	DUF4065 domain-containing protein	A0A0C5ABL3	Bacteriophage	5.1e-92	67.5
WP_024094406.1\|2149885_2150437_+	hypothetical protein	NA	NA	NA	NA
WP_024094407.1\|2150638_2151121_-	SocA family protein	A0A0N9SGM1	Paenibacillus_phage	1.4e-26	41.3
WP_051428031.1\|2151369_2152437_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.2e-48	33.9
WP_096761208.1\|2152691_2154110_-	S8 family peptidase	NA	NA	NA	NA
WP_144029596.1\|2155710_2156019_-	hypothetical protein	A0A0C5AFE4	Paenibacillus_phage	2.9e-25	69.4
WP_023484631.1\|2157574_2157925_+	hypothetical protein	A0A2I7SC07	Paenibacillus_phage	2.9e-13	61.2
WP_023483236.1\|2157917_2159141_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_158673679.1\|2159222_2159936_+	ETX/MTX2 family pore-forming toxin	A0A2I7SC07	Paenibacillus_phage	6.9e-62	61.5
WP_104932540.1\|2160592_2161311_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.2e-59	96.4
WP_023484146.1\|2161434_2162391_-	ribonuclease Z	NA	NA	NA	NA
WP_023484145.1\|2162565_2166006_-	methionine synthase	A0A140XBC7	Dickeya_phage	5.1e-09	46.7
WP_023484144.1\|2166282_2166825_+	cupin domain-containing protein	NA	NA	NA	NA
WP_023484143.1\|2166930_2167725_-	HAD family hydrolase	NA	NA	NA	NA
WP_036654904.1\|2167751_2167937_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_036656935.1\|2168118_2168364_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_023484142.1\|2168641_2169259_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	6.5e-16	63.8
WP_024094581.1\|2169404_2169671_-	hypothetical protein	A0A2I7SCW2	Paenibacillus_phage	1.9e-28	72.7
WP_042119086.1\|2170167_2170398_-	helix-turn-helix transcriptional regulator	A0A0K2CYV5	Paenibacillus_phage	7.5e-10	47.9
WP_051427904.1\|2170498_2171590_-	LCP family protein	NA	NA	NA	NA
WP_046655237.1\|2174264_2174615_-	hypothetical protein	NA	NA	NA	NA
WP_077585046.1\|2174694_2175114_+\|integrase	tyrosine-type recombinase/integrase	A0A0S2SXP1	Bacillus_phage	5.3e-38	59.8
WP_024093300.1\|2175182_2175509_+\|transposase	transposase	NA	NA	NA	NA
WP_077585047.1\|2175553_2175874_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_158673678.1\|2175926_2176370_+\|transposase	transposase	NA	NA	NA	NA
WP_036654912.1\|2176590_2179947_-	RICIN domain-containing protein	A0A1V0E026	Clostridioides_phage	1.4e-88	37.6
2176468:2176485	attR	NA	NA	NA	NA
WP_023483571.1\|2180768_2181143_-	hypothetical protein	NA	NA	NA	NA
2176468:2176485	attR	NA	NA	NA	NA
WP_096761169.1\|2183970_2185305_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_023482825.1\|2185338_2185746_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_174567586.1\|2187208_2188498_-	GTPase HflX	NA	NA	NA	NA
WP_023482829.1\|2189638_2190640_-	lipoate--protein ligase	NA	NA	NA	NA
WP_023482830.1\|2190681_2191383_-	YdcF family protein	NA	NA	NA	NA
WP_024094596.1\|2191572_2191959_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_023482831.1\|2192009_2192657_-	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.2e-20	48.8
WP_023482832.1\|2192867_2195300_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_023482833.1\|2195446_2195686_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_023482834.1\|2195763_2196726_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_036656949.1\|2196713_2197493_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_023482836.1\|2197613_2199662_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	6.0e-66	30.2
WP_023482837.1\|2199692_2202374_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	5.8e-29	22.2
WP_023482838.1\|2202497_2203853_-	hypothetical protein	NA	NA	NA	NA
WP_023482839.1\|2203954_2204524_-\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_023482840.1\|2204621_2205584_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_023482843.1\|2207265_2207766_-	hypothetical protein	NA	NA	NA	NA
WP_046655122.1\|2208207_2209167_+\|transposase	transposase	NA	NA	NA	NA
WP_023482845.1\|2209756_2211277_-	carboxypeptidase M32	NA	NA	NA	NA
WP_036655044.1\|2211383_2211719_+	hypothetical protein	NA	NA	NA	NA
WP_023482847.1\|2211741_2212332_+	carbonic anhydrase	NA	NA	NA	NA
WP_036655047.1\|2212328_2212883_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_023482849.1\|2213010_2213442_+	hypothetical protein	NA	NA	NA	NA
WP_036655049.1\|2213441_2213720_+	DUF2653 family protein	NA	NA	NA	NA
WP_051427922.1\|2213885_2215667_-	immune inhibitor A	NA	NA	NA	NA
WP_023482851.1\|2215784_2216108_-	hypothetical protein	NA	NA	NA	NA
WP_023482853.1\|2216875_2220001_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_036656992.1\|2220136_2221723_-	malate synthase A	NA	NA	NA	NA
WP_023482855.1\|2221764_2223057_-	isocitrate lyase	NA	NA	NA	NA
WP_155121091.1\|2223116_2223278_-	hypothetical protein	NA	NA	NA	NA
WP_036655050.1\|2223563_2224886_-	CBS domain-containing protein	NA	NA	NA	NA
WP_152532829.1\|2225094_2226297_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_023482858.1\|2226624_2226984_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_023482859.1\|2226980_2227673_+	LrgB family protein	NA	NA	NA	NA
WP_036656994.1\|2227735_2228488_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_023482861.1\|2229059_2230100_+	hypothetical protein	NA	NA	NA	NA
WP_036655052.1\|2230254_2232336_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_155116265.1\|2232940_2233090_-	hypothetical protein	NA	NA	NA	NA
WP_052304433.1\|2233455_2233698_+	hypothetical protein	NA	NA	NA	NA
WP_144029584.1\|2234549_2234663_-	hypothetical protein	NA	NA	NA	NA
WP_158673677.1\|2234764_2235118_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_152532830.1\|2235092_2235428_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036655055.1\|2235466_2235754_-\|transposase	transposase	NA	NA	NA	NA
WP_077585052.1\|2235833_2236568_+	hypothetical protein	NA	NA	NA	NA
WP_036655058.1\|2237640_2237853_+	hypothetical protein	NA	NA	NA	NA
WP_158529825.1\|2238129_2240706_-	AAA family ATPase	NA	NA	NA	NA
WP_024093853.1\|2240939_2241089_-	hypothetical protein	NA	NA	NA	NA
WP_077585054.1\|2241437_2242748_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_042119509.1\|2243886_2244156_+	DUF2642 domain-containing protein	NA	NA	NA	NA
WP_023484151.1\|2244241_2246122_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_023484150.1\|2246605_2247823_+	cytochrome P450	NA	NA	NA	NA
WP_152532853.1\|2247985_2248846_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_023484148.1\|2249284_2249743_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077585055.1\|2249910_2251389_-	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	7.4e-26	38.2
WP_096761125.1\|2251536_2252582_-\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9

DBSCAN-SWA_12

2258488 : 2291079

Paenibacillus_phage(42.86%)

integrase,transposase,protease

attL 2286564:2286578|attR 2301506:2301520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096761175.1\|2258488_2258824_+\|transposase	transposase	NA	NA	NA	NA
WP_023482947.1\|2258921_2259584_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-13	28.1
WP_036655066.1\|2259898_2261368_-	hypothetical protein	NA	NA	NA	NA
WP_036655069.1\|2262887_2263211_-	hypothetical protein	NA	NA	NA	NA
WP_023482950.1\|2263316_2263751_-	DUF2383 domain-containing protein	NA	NA	NA	NA
WP_077585056.1\|2263983_2265015_+	AI-2E family transporter	NA	NA	NA	NA
WP_023482952.1\|2265356_2266220_+	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_023482953.1\|2266348_2266774_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_023482955.1\|2267508_2268006_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_036655076.1\|2268061_2268748_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_036655078.1\|2268786_2269740_-	carbamate kinase	NA	NA	NA	NA
WP_023482958.1\|2269756_2271172_-	arginine-ornithine antiporter	NA	NA	NA	NA
WP_023482959.1\|2271268_2272267_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_023483236.1\|2273218_2274442_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_167552503.1\|2274448_2275846_-	radical SAM protein	NA	NA	NA	NA
WP_024095010.1\|2275965_2276163_-	hypothetical protein	NA	NA	NA	NA
WP_104932509.1\|2276187_2276328_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_023485252.1\|2276398_2276959_-	accessory gene regulator B family protein	NA	NA	NA	NA
WP_036655081.1\|2277171_2277909_+	response regulator transcription factor	NA	NA	NA	NA
WP_023485254.1\|2277915_2279211_+	sensor histidine kinase	NA	NA	NA	NA
WP_024095013.1\|2280244_2280466_+	hypothetical protein	NA	NA	NA	NA
WP_040931968.1\|2280534_2280735_+	hypothetical protein	NA	NA	NA	NA
WP_023485255.1\|2281716_2283195_+	ABC-F type ribosomal protection protein	A0A2K9L0W2	Tupanvirus	5.0e-30	25.4
WP_036654192.1\|2283350_2284406_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.5e-15	29.6
WP_024095017.1\|2284410_2284806_-\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	7.0e-40	62.8
WP_024095018.1\|2285825_2286011_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CZ62	Paenibacillus_phage	2.4e-06	54.3
WP_023485292.1\|2286313_2286982_-	adenosylcobinamide amidohydrolase	NA	NA	NA	NA
2286564:2286578	attL	NA	NA	NA	NA
WP_024095020.1\|2287053_2287287_-	hypothetical protein	NA	NA	NA	NA
WP_024095021.1\|2287708_2287987_+	hypothetical protein	NA	NA	NA	NA
WP_036655089.1\|2288113_2288440_-	hypothetical protein	NA	NA	NA	NA
WP_024093681.1\|2288785_2289430_+	hypothetical protein	NA	NA	NA	NA
WP_051427925.1\|2289521_2290103_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158673676.1\|2290363_2290609_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_077585061.1\|2290632_2291079_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0C5AEA5	Paenibacillus_phage	9.0e-36	53.1
2301506:2301520	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2415089 : 2438991

Brevibacillus_phage(40.0%)

plate,tail,transposase,holin,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023484507.1\|2415089_2415293_-\|coat	spore coat-like protein	NA	NA	NA	NA
WP_023484506.1\|2415477_2415822_+	DUF2512 family protein	NA	NA	NA	NA
WP_036655172.1\|2415872_2416220_-	YolD-like family protein	NA	NA	NA	NA
WP_167552505.1\|2416881_2418174_+	hypothetical protein	NA	NA	NA	NA
WP_023484503.1\|2418391_2419165_-	N-acetylmuramoyl-L-alanine amidase	D6QWN1	uncultured_phage	4.0e-55	62.3
WP_023484502.1\|2419161_2419572_-\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	2.3e-30	50.4
WP_167552506.1\|2419610_2419772_-	hypothetical protein	NA	NA	NA	NA
WP_023484501.1\|2419764_2420157_-	hypothetical protein	NA	NA	NA	NA
WP_051427929.1\|2420169_2422269_-	kelch repeat-containing protein	NA	NA	NA	NA
WP_036655179.1\|2422272_2422551_-	hypothetical protein	NA	NA	NA	NA
WP_023482439.1\|2422547_2423117_-	DUF2313 domain-containing protein	S5MA71	Brevibacillus_phage	7.7e-32	42.3
WP_036655181.1\|2423121_2424198_-\|plate	baseplate J/gp47 family protein	S5MUH6	Brevibacillus_phage	9.0e-98	50.3
WP_023482437.1\|2424175_2424598_-	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	3.3e-27	47.8
WP_023482436.1\|2424600_2424888_-	DUF2577 domain-containing protein	S5M5M4	Brevibacillus_phage	7.4e-15	36.8
WP_023482435.1\|2424887_2425856_-	hypothetical protein	S5MNC9	Brevibacillus_phage	3.4e-112	59.5
WP_023482434.1\|2425860_2426502_-	LysM peptidoglycan-binding domain-containing protein	S5MUH0	Brevibacillus_phage	2.7e-49	46.3
WP_036655183.1\|2426501_2428547_-	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	2.5e-128	40.5
WP_023482432.1\|2428918_2429341_-	hypothetical protein	X5JAB6	Clostridium_phage	5.8e-24	41.8
WP_036655185.1\|2429360_2429822_-\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	2.8e-48	60.3
WP_023482430.1\|2429823_2431158_-\|tail	phage tail sheath family protein	A0A0A7S087	Clostridium_phage	7.5e-110	46.4
WP_036655187.1\|2431158_2431341_-	hypothetical protein	NA	NA	NA	NA
WP_023482429.1\|2431315_2431744_-	hypothetical protein	NA	NA	NA	NA
WP_036655191.1\|2432214_2432886_-	hypothetical protein	NA	NA	NA	NA
WP_023482427.1\|2432988_2433438_-	hypothetical protein	A0A0C5AC66	Paenibacillus_phage	1.9e-57	77.3
WP_023482426.1\|2433681_2434137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077585254.1\|2434237_2434600_+	ImmA/IrrE family metallo-endopeptidase	A0A2P1JU12	Anoxybacillus_phage	7.9e-14	40.7
WP_036655196.1\|2434917_2435394_-	hypothetical protein	NA	NA	NA	NA
WP_023482425.1\|2435446_2436928_-	hypothetical protein	NA	NA	NA	NA
WP_023482424.1\|2436942_2437998_-	nucleoid-associated protein	A0A0A8WF33	Clostridium_phage	6.3e-11	25.0
WP_036655198.1\|2438107_2438365_-	hypothetical protein	NA	NA	NA	NA
WP_024095080.1\|2438829_2438991_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2556045 : 2608809

Staphylococcus_phage(26.67%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023484075.1\|2556045_2556444_-\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	1.1e-21	43.5
WP_051427935.1\|2556760_2557636_-	C40 family peptidase	D2KRB9	Lactobacillus_phage	2.6e-10	33.0
WP_077585255.1\|2558201_2559083_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_077585256.1\|2559386_2559992_-	3D domain-containing protein	A0A024B055	Bacillus_phage	2.5e-12	43.6
WP_158225756.1\|2560864_2561047_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036657096.1\|2561257_2561980_+	NTP transferase domain-containing protein	H9NC64	Sphingomonas_phage	7.8e-45	41.0
WP_077585083.1\|2562936_2563395_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_023484069.1\|2563770_2564211_-	hypothetical protein	NA	NA	NA	NA
WP_104932612.1\|2564423_2565469_-\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	7.9e-06	20.9
WP_023484177.1\|2565536_2568335_-	hypothetical protein	NA	NA	NA	NA
WP_036655262.1\|2568331_2568820_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_024093465.1\|2568826_2569114_-	acyl carrier protein	NA	NA	NA	NA
WP_077585085.1\|2569236_2569983_-	3-oxoacyl-ACP reductase FabG	W8CYX9	Bacillus_phage	4.9e-10	46.1
WP_023484174.1\|2569975_2570926_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_036655264.1\|2570922_2571342_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_023484171.1\|2572678_2573626_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-24	32.4
WP_024093460.1\|2575505_2577389_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	3.6e-94	34.4
WP_036655268.1\|2578116_2578914_-	ABC-2 family transporter protein	NA	NA	NA	NA
WP_077585087.1\|2578918_2579797_-	ABC-2 family transporter protein	NA	NA	NA	NA
WP_036655270.1\|2579702_2580728_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	4.4e-17	24.0
WP_036655272.1\|2582450_2585669_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_172423925.1\|2585675_2586302_-	hypothetical protein	NA	NA	NA	NA
WP_051428051.1\|2586429_2587890_-	hypothetical protein	NA	NA	NA	NA
WP_077585088.1\|2587874_2589179_-	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_036655276.1\|2589832_2593183_-	DEAD/DEAH box helicase family protein	Q5YA94	Bacillus_phage	2.0e-18	23.2
WP_023484490.1\|2593193_2594339_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_023484491.1\|2594343_2595801_-	SAM-dependent DNA methyltransferase	A0A1W6JNK1	Staphylococcus_phage	3.2e-21	26.9
WP_077584997.1\|2596351_2596438_-\|holin	putative holin-like toxin	A0A0K2CZR6	Paenibacillus_phage	2.0e-05	100.0
WP_023484492.1\|2596611_2597121_+	hypothetical protein	NA	NA	NA	NA
WP_077585090.1\|2597828_2600990_-	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_036655279.1\|2601091_2601313_-	hypothetical protein	NA	NA	NA	NA
WP_023484495.1\|2601413_2602568_-	ABC transporter permease	NA	NA	NA	NA
WP_023484496.1\|2602573_2603272_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.1e-14	30.0
WP_023484497.1\|2603287_2604298_-	S8 family serine peptidase	A0A2H4PQH1	Staphylococcus_phage	9.9e-22	28.6
WP_051428052.1\|2604294_2604543_-	response regulator transcription factor	NA	NA	NA	NA
WP_144029518.1\|2604863_2605148_+	hypothetical protein	NA	NA	NA	NA
WP_077585257.1\|2605808_2607746_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.8e-11	54.8
WP_158673674.1\|2608154_2608598_-\|transposase	transposase	NA	NA	NA	NA
WP_077585092.1\|2608650_2608809_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

2757385 : 2900072

116

Paenibacillus_phage(15.38%)

tRNA,integrase,transposase,protease,bacteriocin

attL 2819905:2819920|attR 2824460:2824475

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023483236.1\|2757385_2758609_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_023483551.1\|2758768_2759194_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_023483552.1\|2759463_2760033_-	maltose O-acetyltransferase-like protein	NA	NA	NA	NA
WP_023483553.1\|2760515_2761754_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_023483554.1\|2761881_2762715_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023483555.1\|2763162_2763969_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_023483556.1\|2764151_2765330_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_023483557.1\|2765378_2767739_-	UvrD-helicase domain-containing protein	A0A1E1ETV1	Acanthamoeba_castellanii_mimivirus	1.7e-08	25.9
WP_023483558.1\|2767981_2768467_-	hypothetical protein	NA	NA	NA	NA
WP_023483559.1\|2768467_2769265_+	MFS transporter	NA	NA	NA	NA
WP_023483560.1\|2769489_2771127_-	hypothetical protein	NA	NA	NA	NA
WP_023483561.1\|2771461_2772730_-	ABC transporter permease	NA	NA	NA	NA
WP_023483562.1\|2772722_2773628_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	4.7e-23	30.0
WP_155116267.1\|2773773_2773914_-	hypothetical protein	NA	NA	NA	NA
WP_024093220.1\|2775184_2776051_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_024093219.1\|2776177_2776492_-	cytochrome C oxidase subunit IV family protein	NA	NA	NA	NA
WP_046655223.1\|2776496_2777114_-	cytochrome (ubi)quinol oxidase subunit III	NA	NA	NA	NA
WP_077585260.1\|2777110_2778919_-	cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_036655362.1\|2779108_2780116_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_023483567.1\|2780654_2781239_+	guanylate kinase	A0A0K2FM14	Brevibacillus_phage	2.9e-10	28.3
WP_036655364.1\|2781516_2782653_+	conserved virulence factor C family protein	NA	NA	NA	NA
WP_023483570.1\|2784141_2784447_+	hypothetical protein	NA	NA	NA	NA
WP_158225750.1\|2784557_2784860_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_077585104.1\|2784856_2785246_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158529827.1\|2785161_2785983_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	7.2e-39	50.3
WP_077585106.1\|2785937_2786111_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_024093209.1\|2788681_2789038_-	hypothetical protein	NA	NA	NA	NA
WP_036655368.1\|2789034_2789730_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.8e-18	33.3
WP_036655370.1\|2790588_2790966_-	hypothetical protein	NA	NA	NA	NA
WP_024093204.1\|2791330_2791498_+	hypothetical protein	NA	NA	NA	NA
WP_036655372.1\|2792967_2793150_+	hypothetical protein	NA	NA	NA	NA
WP_036655374.1\|2793304_2793604_+\|bacteriocin	circular bacteriocin, circularin A/uberolysin family	NA	NA	NA	NA
WP_036655376.1\|2793611_2794733_+	hypothetical protein	NA	NA	NA	NA
WP_036655377.1\|2794747_2795203_+	hypothetical protein	NA	NA	NA	NA
WP_036655379.1\|2795223_2795838_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-11	30.3
WP_051427942.1\|2795968_2796319_+	hypothetical protein	NA	NA	NA	NA
WP_158225745.1\|2796468_2796714_-	hypothetical protein	NA	NA	NA	NA
WP_052752965.1\|2796769_2797450_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_144029627.1\|2797537_2799295_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_036655381.1\|2799377_2800076_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_023483621.1\|2800047_2800974_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_024093200.1\|2800970_2801771_-	thiazole synthase	NA	NA	NA	NA
WP_036655382.1\|2801772_2801976_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_023483618.1\|2802032_2802737_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_051428054.1\|2802720_2803344_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_036655384.1\|2803764_2804277_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_036655386.1\|2805281_2805899_-	hypothetical protein	NA	NA	NA	NA
WP_023483614.1\|2805885_2806449_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_046655172.1\|2806678_2808091_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_023483612.1\|2808196_2808598_-	hypothetical protein	NA	NA	NA	NA
WP_023483611.1\|2808853_2810296_-	dipeptidase PepV	NA	NA	NA	NA
WP_023483609.1\|2811632_2812151_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.7e-49	63.1
WP_024093191.1\|2812177_2812915_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	4.2e-54	41.8
WP_023483607.1\|2812907_2813393_-	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	7.7e-57	68.2
WP_023483606.1\|2813389_2814061_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.5e-66	57.8
WP_158529828.1\|2814704_2816312_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	2.9e-76	32.3
WP_024093187.1\|2817008_2817146_-\|transposase	transposase	NA	NA	NA	NA
WP_036655391.1\|2818181_2819084_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.5e-45	42.3
WP_046655388.1\|2819050_2819314_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
2819905:2819920	attL	NA	NA	NA	NA
WP_023483999.1\|2820048_2820705_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_036655393.1\|2821376_2821664_+\|transposase	transposase	A0A1P8CWP5	Bacillus_phage	3.1e-05	37.8
WP_023484170.1\|2821711_2822080_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_077585110.1\|2822051_2822324_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	7.7e-14	47.0
WP_023484457.1\|2822562_2823936_+	S8 family serine peptidase	NA	NA	NA	NA
WP_036654156.1\|2824702_2825473_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-32	39.2
2824460:2824475	attR	NA	NA	NA	NA
WP_040931538.1\|2825459_2827406_+	ABC transporter permease	NA	NA	NA	NA
WP_036655398.1\|2829197_2831180_+	acyltransferase family protein	B5WZU0	Pseudomonas_phage	3.8e-41	32.2
WP_036655400.1\|2831196_2831700_+	hypothetical protein	NA	NA	NA	NA
WP_104932532.1\|2832493_2833363_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	7.5e-135	98.7
WP_036655402.1\|2833443_2833734_-	hypothetical protein	NA	NA	NA	NA
WP_036655403.1\|2835142_2836039_+	hypothetical protein	NA	NA	NA	NA
WP_023484003.1\|2836184_2838062_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_023484002.1\|2838187_2838637_+	hypothetical protein	NA	NA	NA	NA
WP_023484001.1\|2838649_2839630_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_144029530.1\|2843085_2844015_-	lethal factor domain protein	NA	NA	NA	NA
WP_023483236.1\|2844144_2845368_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036655407.1\|2848434_2849457_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_036655409.1\|2849443_2849725_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_158225757.1\|2849828_2850686_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_052304444.1\|2850710_2851220_-	TULIP family P47-like protein	NA	NA	NA	NA
WP_036655412.1\|2852966_2853191_-	hypothetical protein	NA	NA	NA	NA
WP_077585262.1\|2855476_2855782_+	response regulator	NA	NA	NA	NA
WP_036655414.1\|2855778_2856084_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_023485455.1\|2856093_2856423_+	ATP-binding protein	NA	NA	NA	NA
WP_023485454.1\|2856770_2857637_-	UbiA family prenyltransferase	NA	NA	NA	NA
WP_023485453.1\|2857626_2859066_-	menaquinone biosynthesis decarboxylase	NA	NA	NA	NA
WP_023485452.1\|2859079_2860354_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	3.4e-27	27.2
WP_036655417.1\|2862444_2863248_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_036655420.1\|2863264_2864131_-	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	4.2e-13	28.9
WP_023485447.1\|2864106_2864940_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.4e-21	34.2
WP_036657173.1\|2864975_2865545_-	Gx transporter family protein	NA	NA	NA	NA
WP_023485444.1\|2866202_2867270_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_036655424.1\|2867714_2868944_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046655058.1\|2869473_2871054_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_144083284.1\|2871294_2871522_+	hypothetical protein	NA	NA	NA	NA
WP_023485441.1\|2871535_2871859_+	YcxB family protein	NA	NA	NA	NA
WP_024093155.1\|2872304_2874062_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.1e-15	30.7
WP_036655426.1\|2874146_2877842_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.3e-76	30.8
WP_023485438.1\|2877906_2878329_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_036655428.1\|2878346_2879219_-	PTS N-acetylgalactosamine transporter subunit IID	NA	NA	NA	NA
WP_036655430.1\|2879993_2880467_-	PTS N-acetylgalactosamine transporter subunit IIB	NA	NA	NA	NA
WP_024093152.1\|2880675_2881401_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_036655432.1\|2881632_2882061_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_023485432.1\|2882434_2883655_-	MFS transporter	NA	NA	NA	NA
WP_023485429.1\|2886029_2886617_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.2e-11	36.8
WP_023485428.1\|2886815_2889983_-	MMPL family transporter	NA	NA	NA	NA
WP_023485427.1\|2889979_2890435_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_077585115.1\|2891262_2891973_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_046655059.1\|2892092_2894132_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-11	43.3
WP_077585116.1\|2894602_2894710_+	TipAS antibiotic-recognition domain-containing protein	NA	NA	NA	NA
WP_036657184.1\|2894771_2895062_+	hypothetical protein	NA	NA	NA	NA
WP_023485422.1\|2895200_2895527_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_046655063.1\|2896312_2896681_-	lectin	NA	NA	NA	NA
WP_024093143.1\|2897091_2897277_+	sporulation killing factor	NA	NA	NA	NA
WP_023485421.1\|2897350_2898565_+	sporulation killing factor system radical SAM maturase	NA	NA	NA	NA
WP_051427950.1\|2898578_2900072_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_16

3612665 : 3648196

Paenibacillus_phage(27.27%)

integrase,tRNA,transposase,bacteriocin

attL 3607371:3607387|attR 3632482:3632498

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3607371:3607387	attL	NA	NA	NA	NA
WP_023482488.1\|3612665_3613145_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_023482489.1\|3613141_3614020_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_023482490.1\|3614026_3614545_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_036655844.1\|3614557_3615586_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-65	39.7
WP_023482492.1\|3615718_3616858_-	glycerate kinase	W6LM47	Streptococcus_phage	1.5e-50	42.2
WP_036655849.1\|3618382_3619363_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_036655851.1\|3619458_3621390_-	ABC-F type ribosomal protection protein	A0A2K9L3Z8	Tupanvirus	8.7e-59	30.7
WP_036655852.1\|3621670_3622300_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_023482498.1\|3622313_3622811_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_023482499.1\|3622829_3623321_+	MogA/MoaB family molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_023482500.1\|3623317_3624328_+	molybdopterin-binding protein	NA	NA	NA	NA
WP_036655855.1\|3624359_3624623_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_024093068.1\|3624667_3625429_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.8e-12	27.7
WP_023482502.1\|3625750_3626032_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	2.4e-18	52.2
WP_023482503.1\|3626121_3627750_+	chaperonin GroEL	A0A219YK78	uncultured_virus	8.1e-159	59.1
WP_077585167.1\|3627838_3628336_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	5.3e-45	59.8
WP_080675781.1\|3628868_3629072_+	hypothetical protein	NA	NA	NA	NA
WP_023483236.1\|3629364_3630588_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_077585169.1\|3630706_3630919_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036655862.1\|3630889_3631102_-	hypothetical protein	NA	NA	NA	NA
WP_077585170.1\|3630997_3631231_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_077585279.1\|3631237_3631390_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036655864.1\|3631638_3631923_-	hypothetical protein	NA	NA	NA	NA
WP_036655866.1\|3632501_3632894_+	hypothetical protein	NA	NA	NA	NA
3632482:3632498	attR	NA	NA	NA	NA
WP_144029687.1\|3633386_3633755_+	hypothetical protein	NA	NA	NA	NA
WP_144029688.1\|3633783_3634041_+	hypothetical protein	NA	NA	NA	NA
WP_023483965.1\|3635025_3636801_+	hypothetical protein	NA	NA	NA	NA
WP_077585280.1\|3637042_3637711_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0K2CXQ8	Paenibacillus_phage	2.8e-129	96.4
WP_024093077.1\|3637980_3638475_-	hypothetical protein	NA	NA	NA	NA
WP_036655869.1\|3638471_3639575_-	endospore germination permease	NA	NA	NA	NA
WP_036657409.1\|3639571_3641095_-	spore germination protein	NA	NA	NA	NA
WP_024093080.1\|3641894_3643145_+	hypothetical protein	NA	NA	NA	NA
WP_036655871.1\|3643216_3646243_+	RICIN domain-containing protein	A0A1V0E026	Clostridioides_phage	1.7e-88	37.6
WP_036655873.1\|3646380_3647604_+	hypothetical protein	NA	NA	NA	NA
WP_036655875.1\|3647971_3648196_+\|bacteriocin	bacteriocin biosynthesis protein	A0A0C5AEG8	Bacteriophage	2.1e-25	85.7

DBSCAN-SWA_17

3801016 : 3858419

Prochlorococcus_phage(18.18%)

integrase,transposase,bacteriocin

attL 3839147:3839206|attR 3858493:3858625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023484873.1\|3801016_3801352_-\|bacteriocin	circular bacteriocin, circularin A/uberolysin family	NA	NA	NA	NA
WP_036655979.1\|3801398_3801959_-	hypothetical protein	NA	NA	NA	NA
WP_036655980.1\|3802310_3803399_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_023484876.1\|3803623_3804169_+	peroxiredoxin	NA	NA	NA	NA
WP_036657474.1\|3804316_3804709_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_036655983.1\|3804746_3806717_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_024095275.1\|3806763_3806964_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_024095273.1\|3807151_3807577_+	hypothetical protein	NA	NA	NA	NA
WP_144029657.1\|3807822_3808782_-	hypothetical protein	NA	NA	NA	NA
WP_023484881.1\|3809001_3809820_+	RNA polymerase sigma factor SigI	NA	NA	NA	NA
WP_023484882.1\|3809812_3810925_+	anti-sigma factor domain-containing protein	NA	NA	NA	NA
WP_046655046.1\|3811137_3812532_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_023484884.1\|3812673_3813213_-	hypothetical protein	NA	NA	NA	NA
WP_023484885.1\|3813573_3815040_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	E3ST28	Prochlorococcus_phage	5.2e-80	39.4
WP_036655985.1\|3815036_3816392_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	2.4e-55	38.1
WP_023484887.1\|3816432_3817539_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_024095265.1\|3818153_3818543_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_023484889.1\|3818764_3819199_+	universal stress protein	NA	NA	NA	NA
WP_077585182.1\|3819498_3819783_+	hypothetical protein	NA	NA	NA	NA
WP_023484891.1\|3819812_3820769_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	6.7e-121	63.7
WP_023484892.1\|3820823_3821309_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.1e-31	42.5
WP_144029658.1\|3821400_3821685_+	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_023484894.1\|3821705_3821906_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	6.3e-05	40.0
WP_023484895.1\|3821985_3824427_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.7e-115	38.0
WP_036657482.1\|3824483_3825107_-	YcnI family protein	NA	NA	NA	NA
WP_023484897.1\|3825196_3825874_-	response regulator transcription factor	NA	NA	NA	NA
WP_036657484.1\|3825870_3826677_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_077585183.1\|3826920_3827208_-	hypothetical protein	NA	NA	NA	NA
WP_023484899.1\|3827931_3828216_+	hypothetical protein	NA	NA	NA	NA
WP_023484900.1\|3828388_3830077_+	copper resistance protein CopC	NA	NA	NA	NA
WP_023484901.1\|3830470_3830827_+	hypothetical protein	NA	NA	NA	NA
WP_023484902.1\|3831216_3831696_-	hypothetical protein	NA	NA	NA	NA
WP_036655993.1\|3832007_3832202_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077585288.1\|3835202_3835382_+	rubredoxin	NA	NA	NA	NA
WP_036655998.1\|3835453_3836161_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_023484907.1\|3836435_3837089_-	hypothetical protein	NA	NA	NA	NA
WP_036655999.1\|3837204_3838386_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_024095253.1\|3838571_3838733_+	hypothetical protein	NA	NA	NA	NA
3839147:3839206	attL	NA	NA	NA	NA
WP_104932597.1\|3839279_3839711_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	6.5e-23	47.9
WP_104932598.1\|3839689_3839842_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036656001.1\|3840056_3840374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158225718.1\|3840532_3840673_-	hypothetical protein	NA	NA	NA	NA
WP_036656003.1\|3840676_3842026_-	hypothetical protein	A0A0K2CP77	Brevibacillus_phage	7.6e-70	34.9
WP_024095243.1\|3842070_3842247_-	hypothetical protein	NA	NA	NA	NA
WP_036656005.1\|3843324_3844314_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_024095245.1\|3844306_3845185_+	ribokinase	NA	NA	NA	NA
WP_023484945.1\|3845186_3845585_+	D-ribose pyranase	NA	NA	NA	NA
WP_023484944.1\|3845599_3847081_+	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.1e-16	27.6
WP_023484943.1\|3847082_3848051_+	ribose ABC transporter-like protein	NA	NA	NA	NA
WP_023484942.1\|3848069_3848987_+	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA
WP_023484941.1\|3849568_3849727_+	thioredoxin-coupled arsenate reductase-like protein	NA	NA	NA	NA
WP_036656007.1\|3849990_3850434_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023484940.1\|3850507_3851302_+	arsenite methyltransferase	NA	NA	NA	NA
WP_077585289.1\|3852044_3852311_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_144029548.1\|3852559_3853462_-	transcriptional regulator	NA	NA	NA	NA
WP_024095250.1\|3854377_3854758_+	hypothetical protein	NA	NA	NA	NA
WP_023484938.1\|3854901_3855807_+\|integrase	tyrosine-type recombinase/integrase	A0A0A7AR08	Bacillus_phage	1.4e-91	57.0
WP_104932598.1\|3857856_3858009_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_104932597.1\|3857987_3858419_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	6.5e-23	47.9
3858493:3858625	attR	NA	NA	NA	NA

DBSCAN-SWA_18

3957523 : 4028474

Paenibacillus_phage(56.52%)

integrase,transposase,coat

attL 3959252:3959268|attR 4031616:4031632

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077585190.1\|3957523_3957724_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	2.8e-05	44.7
WP_167552509.1\|3958016_3958184_-	hypothetical protein	NA	NA	NA	NA
3959252:3959268	attL	NA	NA	NA	NA
WP_051427992.1\|3959472_3959979_+	hypothetical protein	NA	NA	NA	NA
3959252:3959268	attL	NA	NA	NA	NA
WP_023484408.1\|3960978_3963078_+	S8 family serine peptidase	A0A218KC60	Bacillus_phage	3.4e-32	35.9
WP_077585191.1\|3963269_3963491_+	hypothetical protein	NA	NA	NA	NA
WP_023484407.1\|3963565_3965119_-	PAS domain S-box protein	NA	NA	NA	NA
WP_024095162.1\|3965340_3965595_+	hypothetical protein	NA	NA	NA	NA
WP_023484406.1\|3965887_3966427_+	hypothetical protein	NA	NA	NA	NA
WP_096761292.1\|3966727_3966913_-	hypothetical protein	NA	NA	NA	NA
WP_046655148.1\|3967527_3968961_-	SpoVR family protein	NA	NA	NA	NA
WP_023485369.1\|3968957_3970109_-	sporulation protein YhbH	X2JIL8	Bacillus_phage	5.6e-21	40.7
WP_158225712.1\|3970710_3971001_-	hypothetical protein	NA	NA	NA	NA
WP_036656169.1\|3970997_3971369_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_144029536.1\|3971538_3972615_-	hypothetical protein	NA	NA	NA	NA
WP_036656171.1\|3973033_3973228_-	hypothetical protein	NA	NA	NA	NA
WP_023485366.1\|3974162_3974681_-	stage II sporulation protein M	NA	NA	NA	NA
WP_023485365.1\|3975579_3976023_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_023485364.1\|3976379_3976751_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_023485363.1\|3976827_3978339_+	PAS domain S-box protein	NA	NA	NA	NA
WP_024093275.1\|3978362_3978623_+	hypothetical protein	NA	NA	NA	NA
WP_023485362.1\|3978693_3979032_-	hypothetical protein	NA	NA	NA	NA
WP_023485361.1\|3979296_3979608_+	DUF1805 domain-containing protein	NA	NA	NA	NA
WP_023485360.1\|3979990_3980632_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_036656176.1\|3980767_3981778_-	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_023485358.1\|3981797_3983027_-	S-methyl-5-thioribose kinase	NA	NA	NA	NA
WP_024093280.1\|3983245_3983695_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	8.5e-42	61.3
WP_023485355.1\|3984620_3985454_+	Fe-S cluster assembly ATPase SufC	W8CYL7	Bacillus_phage	2.2e-06	25.3
WP_023485354.1\|3985521_3986817_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_023485353.1\|3986813_3988040_+	cysteine desulfurase	Q2XUY6	environmental_halophage	2.8e-111	46.2
WP_023485352.1\|3988026_3988464_+	SUF system NifU family Fe-S cluster assembly protein	A0A218MKD1	uncultured_virus	1.1e-12	31.2
WP_023485351.1\|3988488_3989886_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_024093285.1\|3990128_3990320_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_052337377.1\|3990351_3990651_-	hypothetical protein	NA	NA	NA	NA
WP_036656178.1\|3990969_3991152_-	hypothetical protein	NA	NA	NA	NA
WP_051428002.1\|3991167_3991902_-	hypothetical protein	NA	NA	NA	NA
WP_023485349.1\|3992145_3992748_+	hypothetical protein	NA	NA	NA	NA
WP_158225711.1\|3992741_3993080_+	hypothetical protein	NA	NA	NA	NA
WP_023485348.1\|3993110_3993512_+	hypothetical protein	NA	NA	NA	NA
WP_024093291.1\|3993787_3994450_+	hypothetical protein	A0A2I7SC02	Paenibacillus_phage	5.1e-11	46.7
WP_024093292.1\|3994425_3994656_+	hypothetical protein	NA	NA	NA	NA
WP_024093293.1\|3994915_3995155_+	hypothetical protein	R9W0N4	Paenibacillus_phage	4.1e-35	96.2
WP_077585291.1\|3995154_3995790_+	N-acetylmuramoyl-L-alanine amidase family protein	A0A0K2CXQ8	Paenibacillus_phage	4.3e-124	97.2
WP_024093295.1\|3995903_3996146_+	hypothetical protein	A0A2I7SC00	Paenibacillus_phage	6.2e-31	90.0
WP_036655055.1\|3996794_3997082_+\|transposase	transposase	NA	NA	NA	NA
WP_158442223.1\|3997180_3997849_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_023483374.1\|3997961_3998264_+	STAS-like domain-containing protein	J7KJ12	Streptococcus_phage	9.8e-10	45.0
WP_046655151.1\|3998716_3999712_+	amidinotransferase	NA	NA	NA	NA
WP_144029696.1\|4000048_4000417_+	hypothetical protein	NA	NA	NA	NA
WP_023483236.1\|4000409_4001633_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.7e-228	100.0
WP_036656185.1\|4003186_4003453_+	hypothetical protein	A0A0C5AEH5	Bacteriophage	7.5e-30	76.1
WP_036656186.1\|4004052_4004352_+	SH3 domain-containing protein	A0A0K2CXS6	Paenibacillus_phage	1.1e-45	93.9
4003613:4003629	attR	NA	NA	NA	NA
WP_155116292.1\|4004362_4004533_+	hypothetical protein	A0A2I7SCU7	Paenibacillus_phage	2.9e-19	86.0
4003613:4003629	attR	NA	NA	NA	NA
WP_040931737.1\|4004660_4005641_+	hypothetical protein	A0A2I7SDE4	Paenibacillus_phage	1.4e-68	81.6
WP_036656190.1\|4005904_4006309_+	hypothetical protein	A0A2I7SDE8	Paenibacillus_phage	8.7e-70	100.0
WP_096761311.1\|4006544_4007616_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.8e-152	98.9
WP_024093300.1\|4008003_4008330_+\|transposase	transposase	NA	NA	NA	NA
WP_024093302.1\|4008740_4009007_+	hypothetical protein	NA	NA	NA	NA
WP_024093303.1\|4009090_4010134_+	hypothetical protein	NA	NA	NA	NA
WP_036656192.1\|4010153_4010417_+	hypothetical protein	NA	NA	NA	NA
WP_158225766.1\|4010489_4010588_+	sporulation protein YjcZ	NA	NA	NA	NA
WP_023484376.1\|4010821_4011217_+	DUF3221 domain-containing protein	NA	NA	NA	NA
WP_023484377.1\|4011411_4012458_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_036656196.1\|4012536_4012869_-	hypothetical protein	NA	NA	NA	NA
WP_036656198.1\|4013061_4013778_+	collagen-like repeat preface domain-containing protein	NA	NA	NA	NA
WP_144029662.1\|4013838_4014030_+	hypothetical protein	NA	NA	NA	NA
WP_023484380.1\|4014214_4015630_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_023484381.1\|4015774_4016626_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_077585292.1\|4017014_4018118_+	radical SAM/CxCxxxxC motif protein YfkAB	NA	NA	NA	NA
WP_023484383.1\|4018170_4019541_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_104932592.1\|4019700_4020570_-\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.1e-133	97.9
WP_036656200.1\|4020590_4021274_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	9.7e-122	99.1
WP_077585196.1\|4021454_4021667_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_024093310.1\|4021939_4022206_+\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_040932682.1\|4022247_4022817_+	manganese catalase family protein	NA	NA	NA	NA
WP_036657842.1\|4023209_4023506_+	hypothetical protein	A0A0K2CZ50	Paenibacillus_phage	3.5e-12	70.6
WP_023484389.1\|4023735_4024641_+	hypothetical protein	NA	NA	NA	NA
WP_158225767.1\|4024763_4024898_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_036657844.1\|4025844_4026042_+	hypothetical protein	NA	NA	NA	NA
WP_077585197.1\|4028020_4028230_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_158673690.1\|4028264_4028474_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	5.9e-14	53.7
4031616:4031632	attR	NA	NA	NA	NA

DBSCAN-SWA_19

4069422 : 4076179

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023482600.1\|4069422_4069860_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.6e-21	45.3
WP_036658391.1\|4070804_4071917_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-52	35.5
WP_023482602.1\|4071920_4072586_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-39	43.3
WP_040931955.1\|4072620_4073850_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.1e-111	51.0
WP_023482604.1\|4073885_4074356_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-42	57.9
WP_036657869.1\|4074786_4075569_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.7e-09	34.2
WP_036658393.1\|4075537_4076179_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.2e-14	31.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP019687.1|WP_144029586.1|570092_570284_+|hypothetical-protein

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Acr_ID: NZ_CP019687.1|WP_036658672.1|570298_570568_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP019687.1|WP_144029586.1|570092_570284_+|hypothetical-protein

570092_570284_+

63 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41379310344827586	1.0

560604-639472

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP019687_3	Orphan	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	575220-575185	0
NZ_CP019687_3	Orphan	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	575219-575185	0

1. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019687 position: 575220-575185, mismatch: 0

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
atttacatctgcttcagttgcatatttgtaattgtt	Protospacer
************************************

2. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to NZ_CP019687 position: 575219-575185, mismatch: 0

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttacatctgcttcagttgcatatttgtaattgtt	Protospacer
***********************************

NZ_CP019687.1|WP_036658672.1|570298_570568_+|hypothetical-protein

570298_570568_+

89 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.41379310344827586	1.0

560604-639472

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP019687_3	Orphan	3.4\|1191814\|36\|NZ_CP019687\|CRISPRCasFinder	1191814-1191849	36	575220-575185	0
NZ_CP019687_3	Orphan	3.9\|1191815\|35\|NZ_CP019687\|CRT,PILER-CR	1191815-1191849	35	575219-575185	0

1. spacer 3.4|1191814|36|NZ_CP019687|CRISPRCasFinder matches to NZ_CP019687 position: 575220-575185, mismatch: 0

atttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
atttacatctgcttcagttgcatatttgtaattgtt	Protospacer
************************************

2. spacer 3.9|1191815|35|NZ_CP019687|CRT,PILER-CR matches to NZ_CP019687 position: 575219-575185, mismatch: 0

tttacatctgcttcagttgcatatttgtaattgtt	CRISPR spacer
tttacatctgcttcagttgcatatttgtaattgtt	Protospacer
***********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019687

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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