CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016091	Clostridium saccharobutylicum strain NCP 258, complete genome	9 crisprs	cas3,cas14j,RT,DEDDh,WYL,c2c9_V-U4,csa3,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,cas7,cas8b2,DinG	3	6	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016091_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_1

160092-160236

Unclear

Consensus_repeat	Method
AAATATCGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016091_1

>merge|NZ_CP016091|1|160092-160236|CRISPRCasFinder
AAATATCGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAGTCCTGTCTCCGCAACCATTATATATAAAATAAATATCGCGGGATGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAA

>NZ_CP016091|1|1|160092-160236|CRISPRCasFinder
AAATATCGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAA	GGTCGCAGGTTCAAGTCCTGTCTCCGCAACCATTATATATAAAAT
AAATATCGCGGGATGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_022743502.1\|170627_171593_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP016091.1\|WP_022743499.1\|165751_167560_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP016091.1\|WP_022743500.1\|168037_169708_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP016091.1\|WP_002582985.1\|157005_157281_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP016091.1\|WP_077393952.1\|155335_156787_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|226465
NZ_CP016091.1\|WP_022743498.1\|165140_165680_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP016091.1\|WP_022743495.1\|159084_159489_+\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|235614
NZ_CP016091.1\|WP_022743504.1\|172539_174045_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP016091.1\|WP_022743501.1\|169837_170653_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NZ_CP016091.1\|WP_022743487.1\|152160_152682_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130902
NZ_CP016091.1\|WP_022743505.1\|175425_176817_+\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_CP016091.1\|WP_022743497.1\|163729_165139_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP016091.1\|WP_022743494.1\|158634_158928_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP016091.1\|WP_022743496.1\|161124_163521_+\|stage-II-sporulation-protein-E	unknown	unknown	gnl\|CDD\|274328
NZ_CP016091.1\|WP_022743489.1\|153780_155319_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP016091.1\|WP_022743491.1\|157352_157613_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP016091.1\|WP_022743488.1\|153119_153671_+\|stage-V-sporulation-protein-T	unknown	unknown	gnl\|CDD\|131898
NZ_CP016091.1\|WP_022743492.1\|157859_158153_+\|sporulation-protein-YabP	unknown	unknown	gnl\|CDD\|274341
NZ_CP016091.1\|WP_022743493.1\|158162_158555_+\|spore-cortex-biosynthesis-protein-YabQ	unknown	unknown	gnl\|CDD\|131939
NZ_CP016091.1\|WP_022743503.1\|172043_172526_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_022743502.1\|170627_171593_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.29996e-133
NZ_CP016091.1\|WP_022743499.1\|165751_167560_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP016091.1\|WP_022743500.1\|168037_169708_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP016091.1\|WP_002582985.1\|157005_157281_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.1023e-41
NZ_CP016091.1\|WP_077393952.1\|155335_156787_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|226465	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only].	0
NZ_CP016091.1\|WP_022743498.1\|165140_165680_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	8.14781e-87
NZ_CP016091.1\|WP_022743495.1\|159084_159489_+\|RNA-binding-protein-S1	gnl\|CDD\|235614	PRK05807, PRK05807, RNA-binding protein S1.	4.77606e-76
NZ_CP016091.1\|WP_022743504.1\|172539_174045_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP016091.1\|WP_022743501.1\|169837_170653_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	7.33279e-157
NZ_CP016091.1\|WP_022743487.1\|152160_152682_+\|hypothetical-protein	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.81533e-12
NZ_CP016091.1\|WP_022743505.1\|175425_176817_+\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_CP016091.1\|WP_022743497.1\|163729_165139_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.0741e-73
NZ_CP016091.1\|WP_022743494.1\|158634_158928_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	1.67965e-09
NZ_CP016091.1\|WP_022743496.1\|161124_163521_+\|stage-II-sporulation-protein-E	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	0
NZ_CP016091.1\|WP_022743489.1\|153780_155319_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.23304e-130
NZ_CP016091.1\|WP_022743491.1\|157352_157613_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	6.29196e-28
NZ_CP016091.1\|WP_022743488.1\|153119_153671_+\|stage-V-sporulation-protein-T	gnl\|CDD\|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	8.64174e-96
NZ_CP016091.1\|WP_022743492.1\|157859_158153_+\|sporulation-protein-YabP	gnl\|CDD\|274341	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein. [Cellular processes, Sporulation and germination].	4.09833e-25
NZ_CP016091.1\|WP_022743493.1\|158162_158555_+\|spore-cortex-biosynthesis-protein-YabQ	gnl\|CDD\|131939	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members. [Cellular processes, Sporulation and germination].	5.72516e-15
NZ_CP016091.1\|WP_022743503.1\|172043_172526_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	9.64609e-74

>NZ_CP016091.1|WP_022743495.1|159084_159489_+|RNA-binding-protein-S1
MTLMAGNIVEGTVINITNFGAFIEVEGKTGLVHISEVADSYVKDIREHLSEQDKVKVKVISIDDNGKISLSIKQANVQKKSVKPAEIDWKSPEKKKAAGNFEDIMSKFLKDSEERMQDVKKHQEFKGKGGKKGV
>NZ_CP016091.1|WP_022743494.1|158634_158928_+|septum-formation-initiator-family-protein
MKNKLMIKKLIIVGFIIFFAFSYIRQRIEINRIEKEIANKQSQLQDVKEKNERLQDEVEKINSDSLDYLEKLARERLGMIKPGEKVVNSSTTESSSN
>NZ_CP016091.1|WP_022743493.1|158162_158555_+|spore-cortex-biosynthesis-protein-YabQ
MPLQLSMQFNLVIYSLIAGIITGILFDMYRAIRGFSSIKILTIIEDILFWILAALIVFTFLLYTNYAFLTPYVYIFIVVAILLYLKLISRHFYSSEKIIIKFIAKIIRILLKNICYPLKIIAYKVTDKKK
>NZ_CP016091.1|WP_022743492.1|157859_158153_+|sporulation-protein-YabP
MEKRLENKIEDNKSNLALENRKKLTLSGVIEVISFDEQKIDLTTNLGNLTIKGEELKMNKLDVQNGDVIIVGNIASMVYNGKIAKKNNESIISRLFK
>NZ_CP016091.1|WP_022743491.1|157352_157613_+|RNA-binding-S4-domain-containing-protein
MRLDKYLKVSRIIKRRTVAKEVCESGRILINDKVAKPSTKIKEGDIIQITFANRILKAEIINIAEHVRKEDAKQMYIIIEGEEDKE
>NZ_CP016091.1|WP_002582985.1|157005_157281_+|HU-family-DNA-binding-protein
MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAAREGRNPRTKEVINIPATTVPVFKAGKEFKDKVNK
>NZ_CP016091.1|WP_077393952.1|155335_156787_+|nucleoside-triphosphate-pyrophosphohydrolase
MIKIVGLGPGAKEALTVGTIIELENNKNIFLRTEKHPTVDYLEEKNIKFGTYDNVYESMDSFDEVYLSIANDLIEKHKKLGDLVYAVPGHPLVAEKSVFNLINLCKKNNIEYKVMPAVSFIDAMMEALMIDPIEGLKVIDAFDINNQVLDKRIGTIITQVYNPLIASEVKLKLLEQYNDETEIYFVRAAGIQGQESIRVIPLFELDMQEDIDYLTSIYIPKDLNNKRDFNDLLDIIEVLRGENGCPWDREQTHKSLEKALVEESYEVIDAIEKDDDNSLIEELGDVLLQVVFHASIGKEDGYFDIGDIIEGICNKMISRHPHVFRNSNKIDSSEEVIEKWEDLKKKEKGYESLTEEMNGITKGLPSLLRAHKIQQKAKKVGFDFEDLNSVINKVKEELEEVIDVYNTKNMEKIKEEVGDLLFSCVNVARFLNIDEEIALNFTADKFIKRFDYIERMAKEKGIKLVDMKLNEMDKLWVESKKLD
>NZ_CP016091.1|WP_022743489.1|153780_155319_+|polysaccharide-biosynthesis-protein
MRKQSLMKASIILGISGILTRFLGLFFRWPLIMLIGDEGIGYYQMSYPLYMFFIAIASGVPVAISKMISEKNAINDLNGTFEVVKESAMLMMIIGTGTTLSLFFFAKPIISFLKWDAKAYYSLIGISFAPVMISFMTIFRGFFQGLQNMTPSAISQIIEQMGRVVFGVGLAVFLLPKGIEYSAGGAAFGATAGAVIGSSYLYSKYRKIKKSYGIKKVKSNPEVLNNILKIAIPISLGTTVGSIMNLIDSILVPQKLLQAGFTNTQSTVLYAQLTGKASVIVNVPLTLSMAICTSLIPIIAENFILKKQNELENKIDASMKMAAVIAIPCMFGLFFLTEPIMKFIFPGRFEGIEILKYLSLSIPFIIITQTTTSILQGTGNYIRPVINLLTGCVVKVILTCMLVPMAVFNIYGAVIASVGAYVVTSILNLITMKLMLKVKLNLYQIIIKPAYASTIMMLIVLMSYNIIYRNTISNGISCLISIFLGMIVYMILVVVFKIFKIEEIRDRFRRRM
>NZ_CP016091.1|WP_022743488.1|153119_153671_+|stage-V-sporulation-protein-T
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDRDGGVILKKYSPIEELTDFSKEYCESLQQVIGHIVLIADKDAFVSVSGVPKKEYIERKVSSELEKIMDERKTVLLNKSAGTVIPLHNDDDEASYTSQVIAPIIAEGDEIGAVIILSKEVDVELGDVETKLVETAAAFLGKQMEQ
>NZ_CP016091.1|WP_022743487.1|152160_152682_+|hypothetical-protein
MKYKIENLEEITDAKDIMNAYLNSCSYKLLKYILYIVMSFLICIMVWSIFAKKTIVISAHGELHPKDNICNIYIKNTSLGTIKEGDRVQLETIPFSKNEYGVITSKLENISDDIVIDEKSGEKYYTADCKLDTNILVDKRGNNVNIRNGMEANVSIVTYETSYFKYILKKLIQ
>NZ_CP016091.1|WP_022743496.1|161124_163521_+|stage-II-sporulation-protein-E
MQYGLDVDKYEEISSEPRIKRKTWIKTIAIKLTTILVVGILISRVSLLLNQSDSHGIAPFGIAYLMAVVIKGNKRNNLAAAVGCVLGYLTINNLLTDGYVYLVAIIIMTIYYSFVSTARKRKKELIGFITILFSFFIYGLLVNKYELGVNVTLCLIQTLVIVPIYYVINYALDSLSEISTNYFFNSEEIISIGIFLCLLVAGIGDINLMNYSIRNVIALVLVLATAYIGGASYGAMIGVSMGIILGVASNDMMSCVGFFGVGGLIVGIFKDTGKIFSILAGIIIYFALGLYSDSLTLKLAVEVLTSSILFLCVPKSTYKSIEIEINPDRKKQCLSENKINGIKGEFTFKLKELTRVLATVSKYLGSCNENENLLIKAKGSALVENLADRACSKCENKSVCWERDFHQTYNSFQLLIQSYEKGNIEIPKDLEKRCVKNFGLLKSTESIVDNYTVNETVKERLAEGRHLLSEHITNISSTLDNLLNEFKKEVIIDNDLEKIIRRGLNKNSIDYKDVLCYTDIVGRIKIRISMNNCKGADYCGSTVVPLLSETVKMPLCVSDDGCSINPQTNECVITIEEIPKYYMVSYCAVKSKSGESETGDNYSFGKTINGCYMTILSDGMGSGPEAGQESKATVDLVEKFVEAGFNEDVTVNTVNSIMGMRFAEDEKYATLDLTRVNLYNGEANFVKIGAAPSFIKRGREVKAINSKNLPFGLVDEVDVEIVKERLKPGDILISVSDGVLDIDRFNSEGFIWLKEYLKNINSDPKELSELILNKAKELSDEMIKDDMTVLVSKIYLAG
>NZ_CP016091.1|WP_022743497.1|163729_165139_+|tRNA-lysidine(34)-synthetase-TilS
MYKKVLSYIKDNNLIEFGDKVLVAVSGGPDSICLLNILFKLKEELNIDIGVAHLNHMLRGEDAFGDEEYVINTCEKMNIPCFVKRMDIETYSKEQKLSCEMAGRNARYDFFDEIMKKEGYSKVATAHNANDQAETILFRLMRGTGLEGLGGIKASRDNKIVRPILCLSRKEVEDYIQVNNLNPRIDKTNFEKIYNRNKIRLDILPYMKKNFNDDIIQTLNRMSILIQKDNQFIEKIALSFYNKYCIESKDYFIIKKEMFEEDEVVINRVLRNAITKYSKSNYDFEMKHIYEILQLSKKNSGKIIDLPNKIYAENIYGDIYIKHRKEKNFNSNEKKQEINIDKGNVNNNTIDFNDFKIEFLVIENYNNTKLNLEKNNFIKYFDLDQIIKNISVRNRKDGDKIIPLGMSGSKKLKDIFIDMKIPKEDRDNVPILCFDDKIAWIVGLKVSEQFKITNKTKNILKVVIQRKEY
>NZ_CP016091.1|WP_022743498.1|165140_165680_+|hypoxanthine-phosphoribosyltransferase
MKEDIQEILFSEEVLTKRIKELADGISKDYKGKDLVVVGILKGSVIFAAELIKNISVHCEIDFMAVSSYGNSAQTSGVVRILKDLDHNIEGKDILLVEDIVDTGVTLSYLLKYLKARKANSIEIVSLLNKQARRVADLDVKYIGFEVPDGFIVGYGIDYAEKYRNLPFVGILKPEVYKK
>NZ_CP016091.1|WP_022743499.1|165751_167560_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MKKYSSAAVWIVCSVMLVLAAVTMWQTGKGSNDMTYSAFVQKWNANEIESVVIKEDKMTIEGKTTDNKSFVTYIPSQIVNSLIENQPKTDVRIDFEPPSNNATWVATLLPCVLLAVVIFIFLFMFTQQSQGGGGGRGVMNFGKSKAKMVTPESQTVTFDDVAGADEEKAELEEIVDFLKLPSRYVQMGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEEAKKNAPCIVFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGINEGIIMIAATNRPDILDPALLRPGRFDRQIVVGAPDVKGREEILKVHTKKKPLGESVNLNVLAKRTPGFSGADLENLANEAALLAVRRDKKEISMEEMEEAITRVIAGPEKKSRVITEHDKKLTAYHEAGHAVVMKLLPNCDPVHEISIIPRGRAGGYTMHLPKEDTSYTSKSKLKDEMVGLLGGRVAEKLIMGDISTGAKNDIDRASHIAKSMVMDYGMSDEIGTISYNTTGHDEVFLGRDLGKSRDFSEEVGAKIDKEIKRFIDEAYDTANKLLKSNTNKLHAVAQALIEKEKLDANEFEDIFANS
>NZ_CP016091.1|WP_022743500.1|168037_169708_+|formate--tetrahydrofolate-ligase
MKSDIQIAQEAKMEPIKNVAKKLGLCEDDIEYYGKYKCKISLDVYDKVKDNKDGKLILVTAINPTPAGEGKSTVTVGLGQALNKLGKKAVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMHAITCANNLLSAAIDNHIHQGNDLRIDSRRIIFKRVIDMNDRALRHIVVGMGGKVNGFVREDGFTITVASEIMAILCLAENLDDLKERMGNILVAYNLDGNPIYAKELEVQGAMALLMKDAIKPNLVQTLENTPALIHGGPFANIAHGCNSVMATKLALKLGDVAITEAGFGADLGAEKFFDIKCRYAGIKPECVVIVATIRALKHHGGVLKTELNVPNVDALAKGITNLEKQIENINKFNVTPVVAINRFVTDSDEEIQFIKDFCDKIGVKVALSDVWAKGGEGGIELGNIVLDVLENNNSSFAPIYDEKATIEEKVLTIAREIYGARGVNYTPAAKKQIAEIEKFGLDKLPICMAKTQYSLSDNASLLGRPEGFDINVNEVRVSNGAGFIVVQNGNIMTMPGLPKVPAANKMDVLKDGKIIGLF
>NZ_CP016091.1|WP_022743501.1|169837_170653_+|type-III-pantothenate-kinase
MILLVDAGNTNIVLGVHDGERYIASWRISSDGSKTSDEYSIQVMQLFSLSDINPKDIDGVIVSSVVPNIMHSLENMLRKCFSHEPIIVGPGIKTGINIKYDNPREVGADRIVNAVAAYEIYKKPVIIIDFGTATTFCAVRANGNYLGGCICPGIRISADALFERAAKLPRVELEVPKNIICKNTITSMQAGIIFGYIGQVEYIVKKMKEEMKKGNCNEEPFVIATGGLANLIAKETNIIDKVDSDLTLEGLKILYEKNKEQILDENRKFNL
>NZ_CP016091.1|WP_022743502.1|170627_171593_+|tRNA-dihydrouridine-synthase-DusB
MKIGNLTFDNNVFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTQALLRIADEEKPVAAQIFGRDPEIMASICEEHLNHRDDICIIDINMGCPAPKIVKNGEGSALMNEPELAYEIVKAIKKISTKPVTVKFRKGFDEDNINAVEFAKGMEQAGVDAVAIHGRTRKQMYQGKADWDIIKKIKDSVSIPVIGNGDVFTPEDALRMKELTNCDAIMVARGSQGNPWLFKQIANVLNGETIEEVSNKEKVEMCLRHYQLAIKYDGEYKAIREMRKHASWYIKGLPRCTDIRNSINVLDDSDKVIEILTKYKDEL
>NZ_CP016091.1|WP_022743503.1|172043_172526_+|transcription-elongation-factor-GreA
MSEAKQYVMTYEGVKKLEGELDYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGRIVQLENMLKNAVVVDESEIPKDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPVGKALVGKKVGEIVEVVVPDGMNKFEILGISRS
>NZ_CP016091.1|WP_022743504.1|172539_174045_+|lysine--tRNA-ligase
MSTEEMSMQELESQYNEQEGLRRDKLAELQKEGKDPFDVYKVERTHTSEQVKEKYDELEGKEVTVAGRIMSKRGQGKVVFSDIYDKDGKIQLFLKIDKVGEENLKQYKTFDLGDWVAATGEVFKTRTGEVTVNVNTFELTCKSLKPLPEKWHGLKDPDLRYRQREVDIITNSEVKDTFIKRSKVVSGIREFLENKGFLAVETPILAPIAGGAAAKPFITHHNTLDMDMYLRIAPELYLKRLIVAGFEKVYEMGRNFRNEGMSVRHNPEFTSIELYEAYSDYNDMMEITENMVAYVCEKINGTTKVTYQGTEIDFKPPWRRITMVDAVKEYGGVDFNEIKTNEEAQAIAKEKHLEFPKPLEKVTKGEVLNALYEEFGEANMIQPTFVMDYPVEISPLTKKKRGNPEFTERFEGFVFGRELCNAYSELNDPIVQRQRFEQQANERELGDDEAYMMDEQFMSALETGMPPTGGMGMGIDRLIMFLTDSASIRDVILFPTMRPQK
>NZ_CP016091.1|WP_022743505.1|175425_176817_+|glycine--tRNA-ligase
MAVEKTMDKIVALCKNRGFVFPGSDIYGGLANSWDYGPLGVEFKNNVKKAWWKKFVQESPYNVGLDSAILMNREVWVASGHVGGFSDPLMDCKECKARFRADKLVEDHMTANGAEVASADGWTNEELKEYIEKHEIVCPKCGKMNYTEIRKFNLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKAVQRTSRKKVPFGIAQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWHKYWKDYCWNFLLNLNVKPESLRMRDHGEEELSFYSNATSDIEYLFPFGWGELWGIADRTDYDLNKHQEHSGQDLSYLDQTTNEKYMPYVIEPSLGADRVALAFLVEAYDEEELEGGDVRTVMHLHPALAPFKAAILPLSKKLSERALDIYADLSKKFNLDFDETGSIGKRYRRQDEIGTPYCITIDFDTIEDESVTIRNRDTMEQERVKISELENYIQKSLEF

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Crispr_ID: NZ_CP016091_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_2

1681317-1681399

Orphan

Consensus_repeat	Method
ATGGATATATGAAAACAGGTTGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP016091_2

>merge|NZ_CP016091|2|1681317-1681399|CRISPRCasFinder
ATGGATATATGAAAACAGGTTGGGTTAAAGATGGAGACAAATGGTATTTCTTAAATTCAAATGGATATATGAAAACGGGTTGG

>NZ_CP016091|2|2|1681317-1681399|CRISPRCasFinder
ATGGATATATGAAAACAGGTTGG	GTTAAAGATGGAGACAAATGGTATTTCTTAAATTCAA
ATGGATATATGAAAACGGGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_022744770.1\|1692807_1693644_+\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NZ_CP016091.1\|WP_022744762.1\|1683603_1685478_-\|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit	unknown	unknown	gnl\|CDD\|130763
NZ_CP016091.1\|WP_022744751.1\|1670304_1670847_-\|NADH-peroxidase	unknown	unknown	gnl\|CDD\|153105
NZ_CP016091.1\|WP_077394388.1\|1678136_1679309_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366548
NZ_CP016091.1\|WP_140395263.1\|1671824_1672478_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319798
NZ_CP016091.1\|WP_041716167.1\|1682468_1683530_+\|iron-containing-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|341453
NZ_CP016091.1\|WP_022744765.1\|1686469_1687225_-\|exonuclease-domain-containing-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99836
NZ_CP016091.1\|WP_022744750.1\|1669941_1670268_-\|DUF1540-domain-containing-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022744754.1\|1672695_1673769_+\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP016091.1\|WP_022744766.1\|1687504_1688035_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP016091.1\|WP_022744760.1\|1682018_1682330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022744771.1\|1693846_1694020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022744768.1\|1689035_1690439_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP016091.1\|WP_022744763.1\|1685594_1686008_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP016091.1\|WP_041716163.1\|1677081_1677879_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP016091.1\|WP_022744755.1\|1674197_1676546_+\|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB	unknown	unknown	gnl\|CDD\|179427
NZ_CP016091.1\|WP_022744749.1\|1668035_1669610_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270327
NZ_CP016091.1\|WP_077394387.1\|1671116_1671656_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380316
NZ_CP016091.1\|WP_022744769.1\|1690839_1692225_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP016091.1\|WP_022744758.1\|1679644_1680778_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_022744770.1\|1692807_1693644_+\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.95837e-113
NZ_CP016091.1\|WP_022744766.1\|1687504_1688035_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	6.68234e-09
NZ_CP016091.1\|WP_022744751.1\|1670304_1670847_-\|NADH-peroxidase	gnl\|CDD\|153105	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.	9.97843e-59
NZ_CP016091.1\|WP_077394388.1\|1678136_1679309_-\|hypothetical-protein	gnl\|CDD\|366548	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.	1.39076e-10
NZ_CP016091.1\|WP_140395263.1\|1671824_1672478_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.01342e-92
NZ_CP016091.1\|WP_022744765.1\|1686469_1687225_-\|exonuclease-domain-containing-protein	gnl\|CDD\|99836	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.	1.79873e-46
NZ_CP016091.1\|WP_022744754.1\|1672695_1673769_+\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	2.00105e-13
NZ_CP016091.1\|WP_041716167.1\|1682468_1683530_+\|iron-containing-alcohol-dehydrogenase-family-protein	gnl\|CDD\|341453	cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like. These glycerol-1-phosphate dehydrogenase-like proteins have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH) which plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion.	6.77791e-159
NZ_CP016091.1\|WP_022744768.1\|1689035_1690439_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.71052e-25
NZ_CP016091.1\|WP_022744763.1\|1685594_1686008_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	9.31722e-37
NZ_CP016091.1\|WP_041716163.1\|1677081_1677879_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.23265e-43
NZ_CP016091.1\|WP_022744762.1\|1683603_1685478_-\|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit	gnl\|CDD\|130763	TIGR01702, Carbon_monoxide_dehydrogenase, carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.	0
NZ_CP016091.1\|WP_022744749.1\|1668035_1669610_+\|ABC-transporter-permease-subunit	gnl\|CDD\|270327	cd13609, PBP2_Opu_like_1, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold. This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.17372e-152
NZ_CP016091.1\|WP_077394387.1\|1671116_1671656_+\|nitroreductase	gnl\|CDD\|380316	cd02139, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.55338e-72
NZ_CP016091.1\|WP_022744769.1\|1690839_1692225_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.3185e-26
NZ_CP016091.1\|WP_022744755.1\|1674197_1676546_+\|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB	gnl\|CDD\|179427	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB.	0

>NZ_CP016091.1|WP_022744758.1|1679644_1680778_+|hypothetical-protein
MKTKVCKICVFFIACFSIFLINGIQAKAADLTPDYGIYWYGKGNVSEKFVPGQSNRYFDPTKPTIIYVHGWQKDSQPNNKRESFNFKDENGNVVNGADAWIDKGWNIGIFYWDMFSDEFSVTDAEAKIWSNNGPQKMRWRDHSGNYHYSDYKNAGELFYDTYVQAMKNYKGNNIRIAGHSLGNQMATYLTKRVYDAADAGQISKNLKPSRLALLDPYWSNGGKSYLNNKWTGEACREYVKDLKSKGTAIELYRSTYIDETPAGDNNKGELDQTAFVHLNAWFKNSFDIAGKHNAAVSIYFTSYSSPAPALYNRDGYKKYSKIAGNGPSAASSDSEIKNFMNSNYRYDQYTGVYTLSSKDNGFAQMDRNTNVYVVPIN
>NZ_CP016091.1|WP_077394388.1|1678136_1679309_-|hypothetical-protein
MITFYNHLLINYYSQTNLNSSLLSFYNDWKFRYLRSIKGSYPLKEYLLYTLDQPTANNAITTSEAMGYGMIIFPIMSKFDPTAKVHFTALYNYMKSYPSIYNNNLMAWQQIKDSNGNIVNSEPEPSSATDGDMTISYGLILAYKLWGENDTINYKAEAIKRINTLMNSCVNKNDYILTLGDWVKAIPYNNFKYVTRSSDFMSYYIRKFIEFDINNSTEWKLVLKRFHSIISKQMRRESKYNGLMPDFFIKHNDEYIAPTFKVLESIHDGDYYYNSCRIPWRYSMDILLNKVPVTLQLHTLNNWIKRETLSNPKNIKSGYYIANGFPGEPFGHTDDLSFIAPFLISSLIENGNDNWTISLWETLLNKPITKCTFYENTLKLISMIVATGGY
>NZ_CP016091.1|WP_041716163.1|1677081_1677879_+|sel1-repeat-family-protein
MSGVLVYMDKIVESYQEADINFENMELKKLKKYALRGNLRAQNTIGDRYYIGDGVEKNYEEAFRWYKKAADEGYNVAQYNLGDMYYCGFGIEKNYIKAIELFKKAANKGNIEAACNLGCMYEEGDGTKTDYEEAIKWYVKASEQDDFYAQYNLGNMYMYGKGVAQNYQKAFQLHEKSAKQGYMKAQNTLGYLYEEGKGTLRSYENALKWYEEAAYQEYPYAEYNLGGMYYTGKGVEQNLRIAYAWYERSAEHGLEKAQKALSEKF
>NZ_CP016091.1|WP_022744755.1|1674197_1676546_+|bifunctional-glutamate--cysteine-ligase-GshA/glutathione-synthetase-GshB
MLNKLKKVFTAYELLRGNYGIERESLRVNKDGEISLNSHPTVFGDKIKNPSITTDFSESQIEVITPPFKKVEEVFSFTNALYDIVSMEIGDEYLWPQSMPSIVPEDSKIPIAEYEDDNQGKDARIYREKLIKKYGGKKQLICGIHYNFSFSEEFIEKLYRNEIFKSEFLHNKCIDQDEKDLEYKTFKNNIYLKVSRNYLRYRWLIIYLMGASGIVHESYKCGCKSSVEEIAKSSFTNEGALSYRNSECGYKNKVDLFPSYNSVEEYVESLKKFINDEVINSHKELYSSVRLKPADVKDFSDSLLKDGIKYLEYRSIDINPFEKGGISLEDLYFLQVFNLFLLIDEESDYERWQEDATENQNIISKFGQKSVMLKKDGKSISKEEWALEILQNIKRINNELNLEKEDIIDTMIKKVNNYKLTYAYRIEKIVKEQGYINAHLNLAKKYKENAYNNRFKLEGYEELELSTQILMKEAIKRGISVEVVDKAENFICLKKDDKVEYVKQATKTSKDNYITILIMENKSVTKKILKDNNIIVPNGIEVNSLYEVSNIIKDFVHKPIVIKPKSTNFGTGISIFSEGADEDSIIQAFKIAFKYDNTVLIEEFIKGKEYRFLVTDDKVAGILCRIPANVKGDGKKTIKELVEIKNQDSLRGYHYVTPLEKINLDENAALFLKQQNKDFNYIPKKDEIVYLRENSNISTGGDSIDYTECIPEKFKEIAVKSARAAGAKICGVDMILENYRDENTNYAIIELNFNPAIHIHCYPFKGTERKIGEDVLRVLGFI
>NZ_CP016091.1|WP_022744754.1|1672695_1673769_+|transglutaminase
MKKIIKGIVVILILMCTGYVQPVFASDQNLDNYIYNHLKNWDTEFEIPYYNDDVIDVVQNIAKKDDYLSRSISQLCYKKEENKATLIVAYRTTKEQEEYIDEELKKVINSIITPNMNDFDKVKTINKYLVDRYEYDYALQSNNVYSALTTGKTTCQGYAMSAYKMLNLAGIENRIVIGTLSGTPHGWNLVKLGGKWYQLDVTNDDAVSIDKYFLKSDDYLKKDGFSWNCSDYPKCDSNYQETLQSNKVNESANNVTSKEDYDLNNNGQTIYTYRSSVDGKWCLVNGFWYFLKNDGDYAIGWKLIDNNWYYLSDNGIMQNGWIYSDSKWYYCYPTTGAMATNTSINGYVVDTNGVWIA
>NZ_CP016091.1|WP_140395263.1|1671824_1672478_+|HAD-IA-family-hydrolase
MKKNFEYILFDLDGTLTDSGEGITKAVQYALKYFGIEVSNLDDLRKFVGPPLKESYKNFYGFDDEKADLGLVKFREYYIEKGIYENKMYSGISEVLEKLQKSNKKIIVATSKPEEHAKIVLNHFKIDKYFDFICGADFKETRVKKGDVIKYALEEAKITDLSKAIMVGDREHDIIGAKENNLKSVGVLYGYGDVVELTQARVDYIAKEPKDLLEILL
>NZ_CP016091.1|WP_077394387.1|1671116_1671656_+|nitroreductase
MIEVIKNRRSIRKYMNKEVEEDKLLEILESGRLAPSGSNTQPWQFIVIRPQKNKEKVAKVSHNQKWMTTAPIQIVCVADIRCRIDENIDISLDENSKEEEVKQIIRDTSIAVEHMSLTATELGLGSCWVAWFTQTEFRPVLNIPDDKYVLCVLTIGYPDEVPNPRPRKKLEDIVHYEKW
>NZ_CP016091.1|WP_022744751.1|1670304_1670847_-|NADH-peroxidase
MKKFICTVCGYIHEGDTPPEVCPICKVGADKFKEMKDDLNFADEHRIGIPDNLDDEILEGLRANFIGECTEVGMYLAMSRQADREGYPEVGEAYKRIAFEEAEHAAKFAEILGEVVVPSTKSNLSARVEAEYGACEGKKKLATLAKQNNLDAIHDTVHEMCKDEARHGKAFKGLLDRYFK
>NZ_CP016091.1|WP_022744750.1|1669941_1670268_-|DUF1540-domain-containing-protein
MQKINCEVTNCSHNKSGVCYSNRVDIGGINACSESGTCCGSFLNEAHYGDLTSNTNSNSHSHCDCLICKVESCTHNQNTLCDLNSINVCGSSNSQIYYETECGSFEAK
>NZ_CP016091.1|WP_022744749.1|1668035_1669610_+|ABC-transporter-permease-subunit
MNELFNYLFGAKAQIITLLFEHIRLTALSVGIAILIGMPLGILISYVKKLNKPVLGVASIVQAIPSMALLGFAIPFLGIGTTPAIVMVVLYSLLPIIKNTTTGINGINTQVVEAAKGIGLTRFQILFKIQIPLALPTIMSGIRISAVTAVGLMTMAAFIGGGGLGYLVFSGIRTVNNYQILAGAIPSCILALLVDGIFAIVEMLVTPINLQKNNNKSSLAKIKIRRFQKGILCATACLLMVIFVFTGVSKKINNKKEITIGSKDFTEQEVLGNILSELIERKTDISVNRKFALGGTQVIFSALQRGDVDMYVSYSGTAYGDILKYSPISDVENVYDTVKKDYKDKFNIEVLKQMNFNNTYTLAVTKGTAEKYNLKTISDIAKVGNKLNATTTLEFLNREDGLLGLTNKYNFNFNNTVGIDGTPRYSALMNNESDVIDAFSTDGLLKKYNLTVLKDDKKFFPPYYAIPVVRSEVLEKYPEIKPLVEEAGSLITNDVMIELNYDVDELKKDPKDVAIEFLQKNKLI
>NZ_CP016091.1|WP_022744760.1|1682018_1682330_+|hypothetical-protein
MEKVNDLISKNPIHLTTNTIILIVVAIVAFYIVMKAIEGIVKIIAILGVCYFALMSIQSTNLINVPVIKETYATIEKIIPSKELWTDALNKADKINKVVNDLK
>NZ_CP016091.1|WP_041716167.1|1682468_1683530_+|iron-containing-alcohol-dehydrogenase-family-protein
MKTLIHRIAIPSILEVGKGNINNVGNLIKKSNFKKVLICFGEGIKELFGDSIENSLKEAVIEISKTEIIKDINFEEISIKAFEISNDVEALIGVGGGKAIDAVKYMSFLKKLPFISIPTSTSNDGFSSPGASLLVSGRRMSLPAKTPHGIIIDIDVIKGAPEKFIFSGVGDLISNITALHDWNFEEEHGKIIIDDFAKMISKKSVNSFVRTEFKTIKDDLFLKELVDSLTLNGISMEIAGDSSPASGSEHLISHALDKFLEKPELHGIQVGIATYIMSKVQNHRVERISKVLRETGFFEYVKTLKMRKEDFKKAIDIAPSIKPNRYTYIHVEENRILAKKIIDEDEILNYILV
>NZ_CP016091.1|WP_022744762.1|1683603_1685478_-|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit
MSMCTSADCKLCEFLSSKEEIETSFNRVDTQKAKCKFGKEGVCCKLCSNGPCKITPKSPRGICGADADTIVSRNFLRAIAAGSACYLHVVENTARNLKNIGEGKGNVKIKSPQTLNQLAEIFDITESDINQKAIKVADAVLADLYKPRFEKMELVKKLAYAPRYKRWEELNILPGGAKSEVFDAIVKTSTNLNSDPVDMLFNALGLGVATGIYGLMLTNLLNDVILGVPTIRQARVGFRVIDEDYINIMITGHQHSHISHLQDRLIDEDVKKKAINAGAKGFRLVGCTCVGQDLQLRGEHYTEVFSGHAGNNYTSEAVLATGGIDLIVSEFNCTIPGLEPIAEQFKVKTICIDDVAKKKNAKYINFDMDNAEEISEKIISEALESYKNRRNDITIDIPKDHGYDDVVTGVSEGSLKEFLGGNWKGLIDLIAQGKIKGIAGVVGCSNLTAKGHDVFTVELTKELIKRNILVLSAGCSSGGLENVGLMSPGAAELAGDNLKEVCKALGIPPVLNFGPCLAIGRLEMVATELAENLGIDIPQLPLVLSAPQWLEEQALADAAFGLSLGLPLHVAISPFIDGSPVVTKVLKEDLVDITGGKLIVEDDVIKAADELEKIIANRRAEMNI
>NZ_CP016091.1|WP_022744763.1|1685594_1686008_-|Rrf2-family-transcriptional-regulator
MNINQESDYAFRIILMLSKEGLDNKLDAKSLAEQGNIPLRFLLKLTRKLTQAGIVKSYRGVNGGYAITKEPKDITLKDVVEAIQGPIIVNRCIYDKEACSANKASHCSIHKALCNVQNTLLDELKKVTFEQLKNDPW
>NZ_CP016091.1|WP_022744765.1|1686469_1687225_-|exonuclease-domain-containing-protein
MNYIIYDLEFNQRPSVLTNIDSNNISKLPFEIIQIGALKLNKNLDTISTFNALIKPTLYKTIHPFVEDLTKITTEQVNSCDTFPEVYKNFLNFIGSEEITFCIWGSADIKELIKNIKFHNLSTSSISKKYIDVQNYVSKHFNAPNGTKIGLKNAVELFNIATKTEFHDAFNDAFYTAEVFKKIYNHNIVSKTYESFPSRRLHQPKEKIDTNALIFQFEKMYNRKMTKDEISIIKTAYMMGKTKQFIKNESE
>NZ_CP016091.1|WP_022744766.1|1687504_1688035_+|PadR-family-transcriptional-regulator
MTQIEIILLALLYDKDCHGYEFEQIIEKEKMRMWTHIGFSSIYNALNKLEHCDYIVSRLEKGNGSSSKRVYSIKDESKKIVKENIKKMISEYKSNPNDFKIGFIFSYLLSKDELTEALTKHKESLIERKENLNNEQLNVVRSEERKALFERTIAFLETDILWLDKCIKQNSNINYK
>NZ_CP016091.1|WP_022744768.1|1689035_1690439_+|L,D-transpeptidase-family-protein
MEGHKSKRSKVALGIIMFLCCLAAIYLGISAYFIKHFYLGSTINSMNVSGKTVEEVNEKMSSEIQNYSLELQEKGDVKEQIKGSDIDVKYSQDGESKIKSLKDNQNPLGWISGVFGKKNNETTELISYDEQLLNKVLNGLPGINSKNVVESKDASFEYGDGGYKIVNEVYGNKIDKEVLKQKVSDAIVKEDTTLDLDSSDCYKKPKYTADSQEVTDAKNTLDKYTNVTITYASGNNKEVVDGSAIHNWLSVDDDMQVAFDEKKVKKYVSTKLGSTFNTFGKTRDFTTTSGSKVKVSGGDYGWLIDSTKETKDLIETIKSGQSTTKEPIYAQKAVSSDKNDIGNTYVEVNFTKQHVWFYKNGSLVTDGPCVSGNVSLKLATPPGTYALNYKEKNATLKGEDYSSPVTYWMPFNGNVGLHDASWRSPNEFGGSTYLTSGSHGCVNLPVELAHKIFDNIEAGTPVVCYNE
>NZ_CP016091.1|WP_022744769.1|1690839_1692225_+|L,D-transpeptidase-family-protein
MEISKNQCSKLLVGIIISLCTLIGIYFWISIFFINHFYFGSTINCFNVSGRTVEQADEQISSEIDSYSLKLEERGGEAEQINGNDIDLKYNLDGKIQSFKDKQKPFAWIPGIFTSKDSKSSDIVNYNENLLKKSVDKLSCLDNNTVEPKNVSFKYTDKGYEIVDEVYGNKINKDALYQSIKNAISNGEKAINLESANCYENPKYTSKSKEAIDTKNLLNDYVNTTITYNFGDKTEVLNGATINNWLQVDDDLGVTFDEKEVKKYVDTLASNYNTVGKPRDFVTTAGLKIKVSGGTYGWEINKSEEVKDLISLIKDKKSTTKEPIYSQKGISHDLNDIGNTYVEINMTRQHLWFYKNGSLVTDGPVVTGNVSGGCGTPAGVYKLNYKERNATLKGQGYSSPVSYWMPFNGGIGIHDANWRSVFGGNIYRTSGSHGCVNSPYSLAQSVYQSIDEGTPIVCYYE
>NZ_CP016091.1|WP_022744770.1|1692807_1693644_+|deoxyribonuclease-IV
MLTIGCHLSSSKGFENMGMDALKIDANTFQFFTRNPRGSKAKDIDKEDVKAFLKLAKQNNFGRILAHAPYTLNACSADEKNRNFAIEIMSDDLNRMEYVPNNLYNFHPGSHVKQGVEIGINYIVEALNTILKPEQTTTVLLETMSGKGTEVGRNFEELAEILRRVDLKEHMGVCLDTCHVYDAGYDIVSNLDGVLEEFDKIIGIEKLRAIHLNDSKNPFESHKDRHETIGEGFIGIEAISRIINHPSLRELPFFIETPNELEGHAKEIELLRTMYQNF
>NZ_CP016091.1|WP_022744771.1|1693846_1694020_+|hypothetical-protein
MNVETRSCDKNYIDLVKTDSILEDKKKCSLKEEGIIRSCDECGLKCVCDGISMLSIY

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Crispr_ID: NZ_CP016091_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_3

2338128-2338615

TypeI-B

Consensus_repeat	Method
GTTGAAGATTAACATTATATGTTTTGAAAT	PILER-CR
GTTGAAGATTAACATTATATGTTTTGAAAT	CRISPRCasFinder
GTTGAAGATTAACATTATATGTTTTGAAAT	CRT

7 spacers

cas5,cas7b,cas8b1,cas6,RT,cas3

The CRISPR arrays of NZ_CP016091_3

>merge|NZ_CP016091|3|2338128-2338615|PILER-CR,CRISPRCasFinder,CRT
GTTGAAGATTAACATTATATGTTTTGAAATGGCAATAAAAAAAGCCTTAGTATTAACTAAAACTCGTTGAAGATTAACATTATATGTTTTGAAATTGTTTTCCATCCATTTCGTACTCATTCGAATTTAGTTGAAGATTAACATTATATGTTTTGAAATGAAACTTTTTCTTTTTTATTTTTAGATTTAACGCTGTTGAAGATTAACATTATATGTTTTGAAATAGAAATTTTATACACATAAGTTCATTCACTTCAAATGTTGAAGATTAACATTATATGTTTTGAAATACTAGTGAAACTGCCATCAATACTTACATTGAATTCGTTGAAGATTAACATTATATGTTTTGAAATTTAAATAATTATTAGAATTAGATATACTACTAGTTGGTTGAAGATTAACATTATATGTTTTGAAATAAATTATAAGCATATACAAGTGTATTTGTTTTTCCTGTTGAAGATTAACATTATATGTTTTGAAAT

>NZ_CP016091|3|1|2338128-2338615|PILER-CR
GTTGAAGATTAACATTATATGTTTTGAAAT	GGCAATAAAAAAAGCCTTAGTATTAACTAAAACTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TGTTTTCCATCCATTTCGTACTCATTCGAATTTA
GTTGAAGATTAACATTATATGTTTTGAAAT	GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT
GTTGAAGATTAACATTATATGTTTTGAAAT	AGAAATTTTATACACATAAGTTCATTCACTTCAAAT
GTTGAAGATTAACATTATATGTTTTGAAAT	ACTAGTGAAACTGCCATCAATACTTACATTGAATTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TTAAATAATTATTAGAATTAGATATACTACTAGTTG
GTTGAAGATTAACATTATATGTTTTGAAAT	AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT
GTTGAAGATTAACATTATATGTTTTGAAAT

>NZ_CP016091|3|3|2338128-2338615|CRISPRCasFinder
GTTGAAGATTAACATTATATGTTTTGAAAT	GGCAATAAAAAAAGCCTTAGTATTAACTAAAACTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TGTTTTCCATCCATTTCGTACTCATTCGAATTTA
GTTGAAGATTAACATTATATGTTTTGAAAT	GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT
GTTGAAGATTAACATTATATGTTTTGAAAT	AGAAATTTTATACACATAAGTTCATTCACTTCAAAT
GTTGAAGATTAACATTATATGTTTTGAAAT	ACTAGTGAAACTGCCATCAATACTTACATTGAATTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TTAAATAATTATTAGAATTAGATATACTACTAGTTG
GTTGAAGATTAACATTATATGTTTTGAAAT	AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT
GTTGAAGATTAACATTATATGTTTTGAAAT

>NZ_CP016091|3|1|2338128-2338615|CRT
GTTGAAGATTAACATTATATGTTTTGAAAT	GGCAATAAAAAAAGCCTTAGTATTAACTAAAACTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TGTTTTCCATCCATTTCGTACTCATTCGAATTTA
GTTGAAGATTAACATTATATGTTTTGAAAT	GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT
GTTGAAGATTAACATTATATGTTTTGAAAT	AGAAATTTTATACACATAAGTTCATTCACTTCAAAT
GTTGAAGATTAACATTATATGTTTTGAAAT	ACTAGTGAAACTGCCATCAATACTTACATTGAATTC
GTTGAAGATTAACATTATATGTTTTGAAAT	TTAAATAATTATTAGAATTAGATATACTACTAGTTG
GTTGAAGATTAACATTATATGTTTTGAAAT	AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT
GTTGAAGATTAACATTATATGTTTTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_077394544.1\|2343167_2343752_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP016091.1\|WP_022745992.1\|2337146_2337929_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP016091.1\|WP_022745986.1\|2333679_2334375_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP016091.1\|WP_022746013.1\|2349308_2351360_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP016091.1\|WP_022745997.1\|2342526_2343075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022745989.1\|2334389_2336168_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP016091.1\|WP_022745966.1\|2325558_2327367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022745996.1\|2341404_2342241_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP016091.1\|WP_022745994.1\|2338667_2341244_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016091.1\|WP_022746007.1\|2346546_2347908_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP016091.1\|WP_022746010.1\|2348482_2349289_+\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|214534
NZ_CP016091.1\|WP_022745983.1\|2332525_2333311_+\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|366111
NZ_CP016091.1\|WP_064530724.1\|2345128_2345689_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016091.1\|WP_077394545.1\|2344222_2344756_-\|HXXEE-domain-containing-protein	unknown	unknown	gnl\|CDD\|379370
NZ_CP016091.1\|WP_022745969.1\|2327363_2328869_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
NZ_CP016091.1\|WP_052334828.1\|2331250_2332243_+\|DUF4179-domain-containing-protein	unknown	unknown	gnl\|CDD\|379369
NZ_CP016091.1\|WP_022745991.1\|2336160_2337144_+\|hypothetical-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP016091.1\|WP_022745972.1\|2329456_2330482_+\|DUF1835-domain-containing-protein	unknown	unknown	gnl\|CDD\|378848
NZ_CP016091.1\|WP_022746004.1\|2346024_2346462_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP016091.1\|WP_022745975.1\|2330700_2331228_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|213752

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_077394544.1\|2343167_2343752_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	9.7933e-55
NZ_CP016091.1\|WP_022745992.1\|2337146_2337929_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.35433e-49
NZ_CP016091.1\|WP_022745986.1\|2333679_2334375_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.4086e-09
NZ_CP016091.1\|WP_022746013.1\|2349308_2351360_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	2.04829e-150
NZ_CP016091.1\|WP_022745989.1\|2334389_2336168_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	6.59656e-06
NZ_CP016091.1\|WP_022745991.1\|2336160_2337144_+\|hypothetical-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.11559e-37
NZ_CP016091.1\|WP_022745996.1\|2341404_2342241_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.25284e-22
NZ_CP016091.1\|WP_022745994.1\|2338667_2341244_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.75461e-29
NZ_CP016091.1\|WP_022746007.1\|2346546_2347908_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.4831e-97
NZ_CP016091.1\|WP_022746010.1\|2348482_2349289_+\|chemotaxis-protein-CheR	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	1.00269e-85
NZ_CP016091.1\|WP_022745983.1\|2332525_2333311_+\|endo-1,4-beta-xylanase	gnl\|CDD\|366111	pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11.	4.77448e-86
NZ_CP016091.1\|WP_064530724.1\|2345128_2345689_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.71489e-09
NZ_CP016091.1\|WP_077394545.1\|2344222_2344756_-\|HXXEE-domain-containing-protein	gnl\|CDD\|379370	pfam13787, HXXEE, Protein of unknown function with HXXEE motif. This domain contains an HXXEE motif, another conserved histidine and a YXPG motif. Its function is unknown.	4.64426e-16
NZ_CP016091.1\|WP_022745969.1\|2327363_2328869_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	2.32383e-80
NZ_CP016091.1\|WP_052334828.1\|2331250_2332243_+\|DUF4179-domain-containing-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	2.99941e-10
NZ_CP016091.1\|WP_022745972.1\|2329456_2330482_+\|DUF1835-domain-containing-protein	gnl\|CDD\|378848	pfam12395, DUF3658, Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.	1.07103e-39
NZ_CP016091.1\|WP_022746004.1\|2346024_2346462_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.08728e-16
NZ_CP016091.1\|WP_022745975.1\|2330700_2331228_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|213752	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.	3.51867e-37

>NZ_CP016091.1|WP_022745992.1|2337146_2337929_+|type-I-B-CRISPR-associated-protein-Cas5
MDVVKINIYGKTAFFKKPEVNTYRYLTYGQLHKVALMGIFGCILGLNGYGQQGDKVYPEFYEKLKDIKVSIVPISPAKTGGFSKKIQQFNNSVGYASKEEGGNLIVTEQWLENVSWEVYILCNNDISNKLKDALLGKNTVYIPYLGKNDHVANISSIEVYKGVETQDVSYISTLDSLFLKDCVNIKKLIKPNGFRPVKAAPSCGLEKMREYVYQEFLPYALEPKFNTYDTRKFICTNKSIEVNDKESIIYSINDKNLFFY
>NZ_CP016091.1|WP_022745991.1|2336160_2337144_+|hypothetical-protein
MSNNIKNKLERVYGVLGIKSTMANWNADFTGYPKSLGDGTVYGSDKAYKYPMKVMWDSDPIKRVMYIKSYKVLEKGNDKLLQPRSLKERYEEIYGIEDLKKENDNITVLKNLFQAIDVKNFGATFAESGNNLSIIGAVQITQGLNKYDGHVADYEQILSPFRDGSEKPLKKGEEAKEVMQSTLGNKIFSNEAHYFYSFSINPSVYDKFVKLGVTDGYTREDYEEFKKTALIAASAYDTNAKSGCENEFGLFVETDGDLFLSDLAQYVTFSKSQEGKEVINLVELSKLLNDCMDRIQSVEIYYNPYTTVLEGDIAKARYINIFTRKDV
>NZ_CP016091.1|WP_022745989.1|2334389_2336168_+|hypothetical-protein
MLDDCLDIFEREYKITGDSIILDKYTPDSGLYLLVDSFGDVIKTAEIDNRGTNRHLYKDFIEIDYLSRLLEMNKPIDNKKTVKSNNYLSFWVKITDLMEDTKTKKIKVDEECIDRYFDTLASIDKKYKDKNSTKLYQTILKDVGDIDLKKLENCRAWIKKNIFNILNNYSVDKKYKYVKVFFKADIELYKSEANRYIYPNLFNSNDYNEYEDGLIYGLPNNNMGMNSKKPYLKRIDRNIKVPFLVSLERAMIMKKFFDYLSCLVDGEDKRLNLYIGDSNGLDPIADSALKDSNFNGIYLRLAKEKNEVEIVDYDVISNYTPILKDFFIKEIISSAKTKIKENDNSLVYKEVTKLDELRTIISNIFFNKFLATNFFTPAKNIRLADMVIKDELIKTRAAYFNWFYKNDKNRIINDFEDSSLRLIKNSVVNGYESRAREQFNLRNCINVYLKGSVVDMSNVVLKSYEELSRKLLCKEFISCETDAEYYFAIGQISYYLLYQSNSSKRNMSEIDFIINCKKNETLIQRLERLFKKYSHNIPANANKFRQLYSIINAYTPINEQVDDKMVLAGYLFSNVLFIKSSNNQNLEVSVDE
>NZ_CP016091.1|WP_022745986.1|2333679_2334375_+|hypothetical-protein
MIKVYELIVKTYCLKSISDSKALEKISSLIDKAFLNSEDMCKYHNSREYKFYSHDTFDPWTPSGVSVGEIRSFKIRTVDSKLKNYLMTNLLELSTDSLLVLYVTDKVIPKGELSQIESVTPIIIKTEVGYWRNNYDDEFFIDRITANLIKKYNAFTGKNIPLADIELFNKITLKKSHIKRRYKNITLFGDRYVFYLKDDELSQDIGYFALGSGVAEMCPRGFAFMQYQYKK
>NZ_CP016091.1|WP_022745983.1|2332525_2333311_+|endo-1,4-beta-xylanase
MLRRKVIFTVLATLVMTSLTIVDNTAFAATNLNTTESTFSKEVLSTQKTYSAFNTQAAPKTITSNEIGVNGGYDYELWKDYGNTSMTLKNGGAFSCQWSNIGNALFRKGKKFNDTQTYKQLGNISVNYDCNYQPYGNSYLCVYGWTSSPLVEYYIVDSWGSWRPPGGTSKGTITVDGGIYDIYETTRINQPSIQGNTTFKQYWSVRRTKRTSGTISVSKHFAAWESKGMPLGKMHETAFNIEGYQSSGKADVNSMSINIGK
>NZ_CP016091.1|WP_052334828.1|2331250_2332243_+|DUF4179-domain-containing-protein
MINEEKEIPSVVRISLDSTYDRIRAMPKKKNRVVGKIAAAVCCVVILGSMVTNESVRAGIKTFFDFNDKGVEKAINEGWISENSSSACDNGVEVTLDSYFADCNKIGLSIMLKFNDSKILKGIDKVSLDYRIKNGDGEYIEEFIPDTKPLKGKKQYISNVNDRNSKIDLENNEVQYDVILESEEGAIPKLENAVVEVESIKFFKNNKKVKDIDGIWNLKLNGGKSNDINAVEYKAVNNTSKIEIISAKSSPTSFNITFSVDGECINEKEFMPKDIKLVDGNGKEYQSNGYSSELKNNKTIISTNFSLSSYEDFDKLKLVVPSMGEAELEK
>NZ_CP016091.1|WP_022745975.1|2330700_2331228_+|sigma-70-family-RNA-polymerase-sigma-factor
MEINNLVKKAKRGDGEAFISIIKQYEQVLYKVASRMLSNDQDIADALQETIMLGYEKIHTLKNEAYFNTWICRILINKCNCILNKNKNVILVGEILPQKLNNNDFIKIELEDALNSLNKDYKLAMSLYYVVGLSTKEISKLVNEPEGTIKSRLSRAKTILRESYFKNQGGNEYGR
>NZ_CP016091.1|WP_022745972.1|2329456_2330482_+|DUF1835-domain-containing-protein
MSNIIHICFSQSAGGNLKHAIKKKKLFEGKKIIVFPDDISIGKIGNDMNLDERLEWWDIINKEEATIHSEEINYLKRSYKKFYKEISNINDADIIYLWYGECSNDMCGMMNTLELLKDKIDNIYFVNVSEKIYANDNIIYAYKSVSEIITEKLKEFIPIKRKIGHQEYHDLVSQWNLLKKDNSILRIFKDGKVQSLSEDYFDICILKHTENEFRKSARTVGRVIAYSEMKISDEYIFWRIGELTKSGMLEYKGKFGIMREMEIKITQKGIEYMSTDPEAISFWKNRETEEQFEREKINEAKKQGRMEEKIDIAKKLMDILDVEVIAEKTGLTAMQVKNLIN
>NZ_CP016091.1|WP_022745969.1|2327363_2328869_+|RNA-directed-DNA-polymerase
MIESQENSKNNRQEYRKQVDELGKKEFTLIKMQEYGFWPKNLPTPYEKQENETKEQYLERKNLTKEYEKIIKAITDLYDEKDEINAKLRDLNKKYNETWDYEKIRQDVSKAIMEESIARRKERKEKRELEKKQKNEAWQKEKADRIVFIGRGYSGLLYDKENNEEKLLNQGLPVIKDDKALADFLGIEYKKLRFLVYHRDVVLVDHYNRYTIPKKKGGERNIAAPKLILKNVQRKILEEILSKIQVSDYTHGFLKGKSVVSGAKSHIADKASGENTALLINMDLEDFFPTITFERVRGMFKAFGYSGYISSLLAMLCTYCERMPIEVKGKVKYVKTSDKILPQGSPASPMITNIICVKLDKRLSGLSSKYNCVYTRYADDMSFSFMEEGSALNLGKFMGFISKIVNEEGFNINKNKTRFLRKNNRQSITGVVINNDEIGVSKKWIKTLRAAIYNANKLKNSGEKISQKTINEISGMISWIRSVNEKRYANIIESGMNLINT
>NZ_CP016091.1|WP_022745966.1|2325558_2327367_+|hypothetical-protein
MKVDYSYASPSMCLSQGTDTVLGLSPDLSRDEKVSFLGKLKHPLIFRDAMLMLREIVVSDTSNKKKERVEFFEWLDGEIERQILRHEKYLPDVREKLNKDMNELLNKLDEKSMEISKLVDIKNNLKKEIDNHDIWKDYYKLERDFWKFIRDRDYSLWYVLDPVITVHPDQVSFEAFSLDESTYGCLSINMEEFELLQKPVLGTTNIDFSAKLAKEIERFRTYNDVKLSVNPEGFTVDTGVIPEHMEKKIDLPETWIKGFNQVSSAASLGGMDIELSPVDIYDICAFLRRHKAQKSPRYMKWILEPEKPVRIVFEPFGSEITLKAVYNGEKYREEKIWGRRRWLVVEKIIPLAKSFKVRLLGFGMPQFIIADMGTMKMTIGFSSWSSNDWVKGTAFNILGGFIGDGNYDKVYELMKEKRCLSMESIYDNLKDDLRAVSKSGIGMLLKRGESYFDPINDTIRFRKLCNTPIPKELYETTEMEYSVKDHMKESMDNFSVRFTSSNEFIFKHCFKIPNSKYKSWKYHGTEDYNREHDLSETELIIDEDGQICKVKCKCREFNKGPRNISAPCEHILALYLISSKFTRLKLEVDKEYKINDIMEKIL
>NZ_CP016091.1|WP_022745994.1|2338667_2341244_+|CRISPR-associated-helicase/endonuclease-Cas3
MYFENIKIIDISTLLKEPSDIYSHTKSDILEYETLAEHNERCIKYFYKIVDVKNLDSVFNNFEQRLLKGCSSKCINLWKEIVLNTVFFHDVGKSNPGFQKEKMKNEKYKNIKVNNSNHSRASGIVFFNHYYNEVFAVNNDEAKVLFVFLCLSMYVINKHHSSLEDLAKNLQSINKDLKTPEKNMFANIIKDLNNFDEISDINELHYAFRHELESNTEWISLDMYIYTRFLYSLLVASDFYATSEYMTGAKIEHFGIIDDTKDYRTCLDNSAVGKCIGKYKDFKSGLCTNPYGICKGDMLNQLRTEIYLEADFNIDNNINADIFFLPAPTGAGKTNISINLALKLIENNPLLNKISYNFPFNNLVEQTKNSLYETFNENKKIKESISVINSITPIKEFSSTNDNDEVDFNKSLLSRQFLHYPVIVSTHVGLFDILFGINKENLFPLVHLCNSVIILDEIQAYKNSIWKEIIIFLKTYAKLLNIKFIIMSATLPDLTKLCNTNDGFISLIEDNSKYFTNPLFKDRVDIDYKMLNIDKENLFKALILKVIEVSKLLKKQADKFDNKILVEFITKSAAKDFYENLSTKVKDIHSNEEIILFTGDDSSIERKKIINHIKSSKNIILISTQVIEAGVDIDMDIGFKDISMLDSDEQFVGRINRNCKKENCKVYFFNYDDVTKIYKNDIRNSADYSLLSTKMRELFELKKFDIYYDYIINELNEAADSKNAKNIDFFRKNTLTDLEFYNIKKRMKLIDDQSKITIFLNINVEDENGNIFIGENVWNKYLSLLKNFDITYQEKQVELSKIREKVQYFTYEINDKYKGKFSYDIDKSIGNTFYINNGDDYITNGKFDRDKLINDLFS
>NZ_CP016091.1|WP_022745996.1|2341404_2342241_+|AraC-family-transcriptional-regulator
MIIKKSLINKSIEYILQHIDEDISIEDVTNHCNFSKYYFSRMFKEETGSSIYSFIKRVKMDQSVVSLKVEKDKTITEIGVDYGYSSSNYSSAFSKQYSICPVEFRKTMNSTEVANPFYPNEYNTFKSFEHYDAKIIIQDLGNFKVIYERYIGNYNEIGSNWYSFMERYKTYIKLDTLLIEKSYDDPSITQLDKCICDLCITVDEHVELENVTMIKGGKFAVYQFDGSIYDIFVTFLGIFNIWLPRSGYKRDKRYVLGIYRNIDRKNNHVTMDLCIPIK
>NZ_CP016091.1|WP_022745997.1|2342526_2343075_+|hypothetical-protein
MFDIRKIQEHVIYEAVKDERNEDIAREVVYGKDESCKSENNGIWVKSTMKRLESKFDKETTKKIRMKCQCGYGMDKKLELVKELMELSSSLEELGNLQKAKDSGLFYENGDLYLQFNFCPCPMLTNVDKLDSYAWCQCTTGYSKVLFEKAFQCKVDVELLKSIKVGDERCLMKIVPQGIIWK
>NZ_CP016091.1|WP_077394544.1|2343167_2343752_+|flavodoxin-family-protein
MKVIGINGSARKNGNTSIIIKSIFMELEKKGIETELIELADKTVKGCMGCFGCKGRKQCVIKDDFFNDCFDKMVNADGIILGSPVYSADITSKMKAFLERAGVVVATNPGMLKHKVGASVAAVRRGGGMTAVDILNHFLLNKEVFVVGSTYWNMVYGKDIGDVINDGEGMRNMKNLGENMAWLMEKLSRAHENK
>NZ_CP016091.1|WP_077394545.1|2344222_2344756_-|HXXEE-domain-containing-protein
MNNINTIVWLLPIIFMIHDFEEIIFIKVWRKRYQHYLDNCTMKKKPYADFRSPDEFSIGVEILFVILSITSLFSILLNNYYIWYGLLFTVTAHFITLHFKSCLYFKHYVPGIVTSILFLPINIYIICISTILLKFTVIEIILSCACGAAFIFVIFGILKKSEKYFENFLIKYSNSQK
>NZ_CP016091.1|WP_064530724.1|2345128_2345689_+|TetR/AcrR-family-transcriptional-regulator
MDLRVLKTRENIKNTFSNLLLEKDFKNITVQDICDRALIGRSTFYDHYCDKYDLLNKMVEEIINQFKPYLKSRFNLNSLDDFTKLGSDMLKLFSKKKNIIKALINVHTESADLYYELKKLLIEGCSYYLNKSNFVSKYNISNEYICGHYASFVLTSFQLWLELGEDENNLQLANRMHSVLFESAGI
>NZ_CP016091.1|WP_022746004.1|2346024_2346462_+|MarR-family-transcriptional-regulator
MTKSRYSIETPYSQLIRSIAIKMKLSSDEKVKKLGLNSQQGRMIGYIYEHQDSGIIQKDLARVFQRTEASITSMLQGLEKKGYIERRIPKENERQKYIYVLPKGAELIEDFNKLVVEEEENIIANLTEQEKETLLAVLLKVDRNL
>NZ_CP016091.1|WP_022746007.1|2346546_2347908_+|MATE-family-efflux-transporter
MKQKLSNKYYLESAPITKAIAHLSIPMMIGMSVGTIYNVINAFFIGLLNNTDMLTAITLGLPIFTILMAFGNMLGAGGGTFITRLVAKQNIEKAKKIAGYTFYSSIIIGILLGIIAMIALNPIVNIMGADTSAIINYTKSYSLTMFIGGFAIVMNFALEQVVRAEGASKESMFGMVVSTIFSLIFDTLFILVFKFNVVGVALSMILANIASSIYYVYYLETKSENLKGFIKNFNISLKDKIEIYKIGVSELFLAGFLIITTLLLNNYSIRYGEGVVASFGIALRIVQVPEFLAMGLALGIIPLIAYNFSNENFKRLEDSIKQSALWILGLSGGVVTLVYIFRNVIIHLFSNDSAVLSVGVYIMAAMLISAFFNGFTTLFTGIFQASGQGLPSTIMAITQGILFIPVIIVLNNFFGLHGVIWSMTITEIITFLTGVILYIIFNNKIKKNKVVAN
>NZ_CP016091.1|WP_022746010.1|2348482_2349289_+|chemotaxis-protein-CheR
MDEFTDIYFKKYCDLLYKRTGIFVRENKKETFKLKIEKSMRKLNIYNHDEYLQYLQKYDCKEHFQQFINDMTTNTTEFFREKQHFDFIENNIQFIMKNNPRIARKNEIRIWSAASSSGQEAVSLAILLKECLDNRINIKILATDIDSEILSKAVKGIYSHSECKDIPQELLYKYFDKVSNGFSIKGEIRSMIQYRHFNLMQDYNFKKGFDIIFCRNVMIYFSNPIQERLINKFYNNIVQGGLLFIGHSESLVSKSHKYQYIGPAIYMK
>NZ_CP016091.1|WP_022746013.1|2349308_2351360_+|chemotaxis-protein-CheA
MNEILVGYIEDLKYNLINLNEALMEMENGNTNDNVINTVFRVAHTIKGNSAAMEFYNIEKVTHKMEDILQEVRSGKRILTGEIINSLYSFHDFMEDCITFINQDKCDKNIVITEIIQELLKILTGNAPDINESSESNKKHDEELRILKEVKCDTELCNKILENFNRGFMPYWIDVTINERCVMKSLRTWLVFETASAYGSIISSIPECPTEEELGSNKEFIIQNNCVRFLIVIDKDVDLLVSELFNTSEITNVKKQEIDIESIRQKIEDSKKENKIVKDKNIGSSKSQNLKQSSGNEKMADNFIRIPVLKVDGLMDMLGELLILNSQFEQQISEAFGRNSAMMNNLSRSSKLIKEIQASSMSLRMIEIKPTLHRLHRVARDTAAELNKKIFIIIEGEETEIDRSAAEKIFDPLMHLVRNAVSHGIEEEEERIKAGKKAEGTIHIKAYSKRDSVYVEISDDGKGIDTQKILKKALNLNMAEENKVYSEEEIVKFIFKPGFSTQEVVNNISGRGVGMNVVEEVISNLGGKIEVVNVLGQGCAFTIKIPMNLAVMNGTIIEVAGGRYIIPTLFIKEFFIVDKSNLISMQNKTQALRIRNNIIPIVNVSNMFNISENDKLLNLREVVILEMDQRLLAFPVDGIVARQEIVSKPLESEFSSISYASGAAILGDGRVSLILDVEEIFKM

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Crispr_ID: NZ_CP016091_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_4

2367042-2367233

Orphan

Consensus_repeat	Method
TAAATTAAAAAGTATAACAATACCAGATAGTGTAACAAATATAGGAGAATATGCATTT	PILER-CR
AAAGTATAACAATACCAGATAGTGTAACAAATATAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP016091_4

>merge|NZ_CP016091|4|2367042-2367233|PILER-CR,CRISPRCasFinder
TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAGAGGATTGGACATTTAGCGATTGTTATAAATTAGAAAGTATAACAATACCAGATAGTGTAACAAATATAGGAGAATATGCATTTGTTAAGTGCGTTAATTTAAAAAGCATAACAATACCAGATAGTGTAACAAGTATAGGAGATTATGCATTTT

>NZ_CP016091|4|2|2367042-2367233|PILER-CR
TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAGAGGATTGGACATTTAGCGAT	TGTTATAAATTAGAAAGTATAACAA
TACCAGATAGTGTAACAAATATAGGAGAATATGCATTTGTTAAGTGCGTTAATTTAAAA	AGCATAACAAT
ACCAGATAGTGTAACAAGTATAGGAGATTATGCATTTT

>NZ_CP016091|4|4|2367045-2367218|CRISPRCasFinder
AAAGTATAACAATACCAGATAGTGTAACAAATATAG	AGGATTGGACATTTAGCGATTGTTATAAATTAG
AAAGTATAACAATACCAGATAGTGTAACAAATATAG	GAGAATATGCATTTGTTAAGTGCGTTAATTTAA
AAAGCATAACAATACCAGATAGTGTAACAAGTATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_022746019.1\|2352621_2353080_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NZ_CP016091.1\|WP_022746072.1\|2375955_2376837_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225115
NZ_CP016091.1\|WP_022746051.1\|2369841_2370234_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077394547.1\|2355226_2355772_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP016091.1\|WP_022746029.1\|2357432_2359925_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|376899
NZ_CP016091.1\|WP_022746060.1\|2372598_2373282_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP016091.1\|WP_022746066.1\|2374456_2375182_+\|ABC-2-family-transporter-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077393843.1\|2365346_2366270_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP016091.1\|WP_077394548.1\|2355830_2357108_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP016091.1\|WP_077394549.1\|2361940_2364433_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_CP016091.1\|WP_077394552.1\|2370361_2371123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022746039.1\|2364564_2365245_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP016091.1\|WP_077394546.1\|2353105_2354719_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP016091.1\|WP_077393781.1\|2361266_2361938_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP016091.1\|WP_041716223.1\|2360324_2361164_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP016091.1\|WP_022746069.1\|2375197_2375932_+\|ABC-2-family-transporter-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077394551.1\|2368270_2369389_+\|DUF4179-domain-containing-protein	unknown	unknown	gnl\|CDD\|379369
NZ_CP016091.1\|WP_140395246.1\|2373540_2374473_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016091.1\|WP_022746045.1\|2367708_2368269_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|180707
NZ_CP016091.1\|WP_022746057.1\|2371491_2372463_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_022746019.1\|2352621_2353080_+\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	1.77533e-42
NZ_CP016091.1\|WP_022746072.1\|2375955_2376837_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	2.42232e-25
NZ_CP016091.1\|WP_077394547.1\|2355226_2355772_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.59859e-69
NZ_CP016091.1\|WP_022746029.1\|2357432_2359925_+\|FtsX-like-permease-family-protein	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	4.29963e-09
NZ_CP016091.1\|WP_022746060.1\|2372598_2373282_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.23469e-81
NZ_CP016091.1\|WP_077393843.1\|2365346_2366270_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.17333e-44
NZ_CP016091.1\|WP_077394548.1\|2355830_2357108_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.27934e-14
NZ_CP016091.1\|WP_077394549.1\|2361940_2364433_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	2.16033e-10
NZ_CP016091.1\|WP_022746039.1\|2364564_2365245_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.43192e-73
NZ_CP016091.1\|WP_077394546.1\|2353105_2354719_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	4.08112e-62
NZ_CP016091.1\|WP_077393781.1\|2361266_2361938_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.07448e-104
NZ_CP016091.1\|WP_041716223.1\|2360324_2361164_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	4.02695e-11
NZ_CP016091.1\|WP_077394551.1\|2368270_2369389_+\|DUF4179-domain-containing-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	3.35139e-20
NZ_CP016091.1\|WP_140395246.1\|2373540_2374473_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.67153e-89
NZ_CP016091.1\|WP_022746045.1\|2367708_2368269_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|180707	PRK06811, PRK06811, RNA polymerase factor sigma-70; Validated.	1.89393e-70
NZ_CP016091.1\|WP_022746057.1\|2371491_2372463_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.63962e-13

>NZ_CP016091.1|WP_077393843.1|2365346_2366270_+|HAMP-domain-containing-histidine-kinase
MKLSIIFSIIVILILNGFMFYINRYMCSILEKLTDLINGIMDGNEEEIFSALNDDLLSKLQNQTVKLTSILKSQNKALQEEKNKIQSLVTDMVHQLKNPFSNLKLYCELIKDKNISVEERKEFVSIINNQLEKFEFLMESMIKISRLESDIITLKLNQNSLDDICLASIKQVYEKAKNKNIEIEFISKEDISIFIDKKWTCEAIVNIIDNAVKYTNSNGKIIIKTNCFEMFAMIEIKDNGIGIEKEEINNIFKRFYRGNNVSTDEGAGIGLYLSRKIISKQNGFIKVKSERNKGSSVSVLLPLVTKM
>NZ_CP016091.1|WP_022746039.1|2364564_2365245_+|response-regulator-transcription-factor
MATILIVEDDIALNRGLAFSIKQSGYNIISVFNSREGSIALLENTIDLIILDINLPDKSGLDLCYDIRKNSDKPIIFLTANDTEQDIINGFKAGCDDYISKPFSIEVLRQRIGAVLKRSYVKEKNIYICGAIKINFDKIEVFKDDEAINLTPKEYKLLELLCKNRGKVLKRETILAKLWDINGQFVDANSLSVTVKRLRKKIEDDVKNPKYIITVFGIGYMWSDEK
>NZ_CP016091.1|WP_077394549.1|2361940_2364433_+|ABC-transporter-permease
MGFLKNNNSAIIRKLTIKTLKANKLRNIFAFIAIALTTLLFISIFTIGTGIINSLEHENMRQSGSSAHAIFKYLNEDDLDRIKVHPLIKEFGYSIMVGNEENSKLLKHNAEIRYETDKMAQMTFCYPTTGKMPQEENEIVTSTKVLDLLGVLHEIGQKLKIEYNIQGEKRSKEFVLSGFYESEEASNLSMILVSKSFVDKELANIDLKNSKFTSQNTGVIDLDVMFESNFSIQEHLDTILNDCVYSINQGAENNIEAHINLAYMSTNFNKDLTVPMIEAILLIILTGYLIIYNIFQISVVKDIRLYGLLKTIGTTPKQIRKIIINQAFLFSFIGIPIGLILGFLIGNILLPIIMSAMSIKKYYISFYSIIFIGASIFSLITVYISCKIPGEIAASVSPVEAARYNEVKVKSKKKIKKSSQGINVYNMAFCNILRNKKKTIIVIISMSLSLVLLNSVYTFIKSFDMDKYLSRFIISDFIVGNSNYFNDQKVFKNESDIVSEDLINAINNLDYIKDGGKVYFNLGDDKVLFNYYQRTAQVYGLDDFPMSQLKVVEGNIDLEKLKSGKYILENVYTDDFGNYEMKSAPFDVGQKVTLNLENSTNKEYEIMAKVEMKDNMTVRYAAFDTEEGYATRMILPSNEFCNIVKKPLPMIYMFNVNKNNLDETEKFIKNYINNIECNMNYESKKVYINEFKGVQNMILLVGGILSIIIGFIGILNFINAILTSIISRQIEFAILQSIGMTTKQLKNMLKFEGIFYAVATILVSLAISSIVSITIVHHIISDSWFCKYNFTILPILITVPILLILGVMVPSISYKATSRKSIVERLRKLE
>NZ_CP016091.1|WP_077393781.1|2361266_2361938_+|ABC-transporter-ATP-binding-protein
MSILQAKGLKKHYGTEINLVKALDNINIEINEGEFIGIVGTSGSGKSTLLHMLGGLDRATDGKVFVRNKDIFSMNDDELTIFRRRNIGFIFQNYNLVPVLNVYENIILPIELDGNKVDEKFVNNIIKTLGLSEKLNNLPSNLSGGQQQRVAIARALATKPAIVLADEPTGNLDSKTSLEVMGLLKVTSKEFHQTIVMITHNEEIAQMTDRIIHIEDGQIVRRE
>NZ_CP016091.1|WP_041716223.1|2360324_2361164_+|4Fe-4S-binding-protein
MGNKMIIKYKFPIIMFLVFEIIAITLWLELDNLFYLFNFSYIGICITMGLFLNIKRFRYARLVVQLGVGLYMLVYLGVICHENMMIEGFWYYLFLGVFQSAVIHYIVAKICGPFIFGRGWCGYACWTAMILDLLPYKIPQYSRKKLGFIKYVLFILSLTFVGTVFFLRIPNLEKVMFWSFVIGNLLYYTVGIILAFLFKDNRAFCKYICPITVFLKPASYFSMLRVKCDKEKCINCGKCKRICPMNVDMINNDRKRINGTECILCTNCIVECPQKALYI
>NZ_CP016091.1|WP_022746029.1|2357432_2359925_+|FtsX-like-permease-family-protein
MSFLKNNNSAIIRKLTIKTLKANKLRNIFAIIAIALTTLLFTSIFTIGIGITKSFEQETMRQSGGSAHATFKYLNENELDKIKVHPLIKEFGYSIMVSKGENSELLKHHTEIRYETDKMAQMSFCYPTAGKMPQKENEIVTSTKVLDLLGVSHEIGQKLKIEYNIQGEKRSQEFVLSGFYESDDASNFSMILVSKSFIDKELVNIDFKNTKFTSQDTGFINLDVMLKNSLSIQEDLDTILNECGYSNNKGAENYIATGVNWAYMSSNFNSEIIIPILGAILLIILTGYLIIYNIFQISVIKDIRSYGLLKTIGTTPKQIKKLITNQAFLLSFIGIPIGLILGFLIGNILLPIIMSTTTIKKAYIPFNPIIFIGASLFSLITVYISCKRPGKIAASVSPVEATKYNEVKIKSKKKIKKFSQGISVYNMAFCNVLRNKKKTIIVIISMSLSLILLNSVYTFIKGFDMDKYLSKYIVSDFIVGSANYFNNQKLFKSESDIVSEETINTINNLDYIKSGGRVYFNLGKDKVSFNDVKRTAQVYGLDDFPMSQLKVVEGNIDLEKLKSGKYILENVQTNDYGNYETKSAPFDVGQRITLSLGNYGDKEYEVMAKIEMKNNMTARYYSYEAGEGYPVRMILPSSEFCNIVEKPLTMIYMFNVHKNNLDEAERFIENYTNNIEYNMNYESKQVYINGFKSVQNMFLIVGATLSIIIGVIGILNFINAILTSIISRQMEFAILQSIGMTTKQLKNMLKFEGVFYAVSTILVSVIIGSIVSITIVAPISREIWFCKYEFTILPLLIIVPILLILGVLVPSISYKATSRKSIVERLRKLE
>NZ_CP016091.1|WP_077394548.1|2355830_2357108_-|IS4-family-transposase
MKNIKLLSQILKKTNKLIISNEFKEAYSLGNSFSRKRKLSFSNAVHFICSALRKSMATEISNFIEEHTYLDFPCISKQAFSKARQNISPEAFKELCRLFVDSFYSSTNNLKKWNGFNVLAVDGTSLQVPDTIECGEYFGLSKNQNKVQTAIASASALYDVLNDIIIDASVTKFRTSEREMAKQHINTLNNEKLLNNSIVIFDRGYPSYDMFDYLNDRNLFFLMRISSSFKIIQSISSEDCIFEYKSKGELKKVRVIKIKLSADTTEILVTNIFDEIITPNQFKELYFLRWGVECKYKELKSSIEIEEFSGTKPIAIEQDFYASIYISMVAALIKKDADAAIANKNKDKNLKSEYQANRNFILCDVLKKIIVMMVKPISGKRILEHILEKAKKIRSQIRPNRNCERKNKHPRKKTSFSKEILHISL
>NZ_CP016091.1|WP_077394547.1|2355226_2355772_+|ATP-binding-cassette-domain-containing-protein
MSILQAKGLKKHYGTEINLVKALDNINIEINEGEFIGIVGTSGSGKSTLLHMLGGLDRATDGKVFVRNKDIFSMNDDELTIFRRRNIGFIFQNYNLVPVLNVYENIILPIELDGNKVDEKFVNNVIKTLGLSEKLNNLPSNLSGGQQQRVAIARALAQCRQLSKIVMKKLLQISNSVCYIS
>NZ_CP016091.1|WP_077394546.1|2353105_2354719_+|methyl-accepting-chemotaxis-protein
MNFNNWKVKNKIILSIIMSFIMFVTMGVVAILATGKVYDDGIYIATNSMPSVETANAINTAASDYLLLQYQHVISEDKGVMANLEKNMVDKNSQIQQLIQTYSKELISSDEDKKLIDSVKQKWDSYMEVSSKVTSLSRDMKTEDAMKLMETQGVPSFNDAGNILDDLVALNQKLSKENTDNLSSTYSATKIGTIIFLCIGTIASIAVNTLILLSITKPLTKNSNKLGEVARSIAGASSQLAASSQQLAEASSEQAASIEEVSATMDESSSMVIQSTENTRQASTLANEANESSNLASLEMKDMMVSMEEIQQSSSEIGKIIKVIDEIAFQTNILALNAAVEAARAGDAGKGFAVVAEEVRNLAQRSAEAAKDTAVIIEKNIQLSGRGSDAAGKVNTALDDISSKVDKLNNLISEISAASQEQAQGIEQVNRAISQMESVTQQNAAGAEESASAAEEMKSQARTLQRIVESLSLMVKGVVEIDEEGFNMNIKNYMGKKKSKATSYYNTKSSLENKKVRYTKTMTNPEDIIPLNEDDDF
>NZ_CP016091.1|WP_022746019.1|2352621_2353080_+|chemotaxis-protein-CheW
MAVELNKFLTFNIGEEFYGIPVLNVKEIIGMLDITSVPKMPEYIKGIINLRGKIIPVMDLRIKFGIPSREYDARTCIIVIETEVLNQTRLTGMVVDTVSEVLDINKETIESPLACFGEVNKEYLTGIGKIKDKVIMLLEPINIMSTYEKDTI
>NZ_CP016091.1|WP_022746045.1|2367708_2368269_+|sigma-70-family-RNA-polymerase-sigma-factor
MRCTEKNYISRLKKGKEDALEFIVDKYLGLVKCTVYKVLSTSDKNGIIEECINDVFLSIWNNSDKFTGEEVDFKKWIFKIARFKAIDYYRKEVKNLDLSIEDREISTNGLVEEEIIKAEERSELINLINTLQPMDRDIFIMKFFLGVKSDDIARKFGLTRAAIDNRIYRGKKKLSEKISRLNLEVV
>NZ_CP016091.1|WP_077394551.1|2368270_2369389_+|DUF4179-domain-containing-protein
MKDIYEILNDVDIEDDEIEVMNVSDIEKAKVKKYLRESINKNRVWKKRGIAAVLCCSLIGSAAALGVVYPSYAAEIPIVGDIFRFIDNGRTGAYDKYKEYAEVVGTTQESNGIKVTIKEAIFDGITLTYTYEIISDRDLGDNPFFNMNGPRITITDYNGGSGGNSGVKKVAQNTYVGQETVILNEERKAISFELNFTDIGDMSSENSKEIKGNWKFKINLKALDNVKQLINKTTEKDGVRLNMENISRTPVTFTLNYSQEVSKELQEKYFVVDIPIEEVRDDLGNVYKATSISTNEGSEGRYAGKSISNFGELNPNAIKLIITPKVHLSNNVHKESGNADGKVVDTSPIIDKNHPKNDEITLDDIVIELKSK
>NZ_CP016091.1|WP_022746051.1|2369841_2370234_+|hypothetical-protein
MIKEQVCKKYLKDNDILLFEVNAFGELSKTQFIPITLINLLVGVILSDGTGGNLLEHCYVLGFGKLNIYILDLGIQISKHKNITPKKVHILDKEIINDITIDSGIMNKIIIQIQEEKKVLYVNCNEITPS
>NZ_CP016091.1|WP_077394552.1|2370361_2371123_+|hypothetical-protein
MSYKEIKDLLNRLNSENIEELKPILTRKVNELILKMNDDNICDSELESLCNFLITREEFRNESMKQKSLIEGLLIEHFIKVFDEFISEINNKYYISHAIELTNTSIRSIGGIARGYRLMKNYGLSKDVNKVQYLTELKAEFYKQLRSYSSKGIYEEQFVTCGLINIIKFELEEQLQEHGRYVISMLTDHKTKKMKSFEEFEKEPHLDELKIKMKREFGIELQRRIYSWNNLTRKLEDHYYLENLYEEAYNKLD
>NZ_CP016091.1|WP_022746057.1|2371491_2372463_+|CPBP-family-intramembrane-metalloprotease
MSDNNEAKDFKKLMRKDFNKLGITLILQELLLNGVMIVLGIGVAIIQIVKNRDISDGQIDNIFNQPSFIGTISIIGVLIAFIPILIYRGEKFFQYDLKIVNRKFTLKTVIIGFIILLSANNLLGLFTDGLEFGLNTIGFSAKSALDSLDDMNQPVTSMIIYACIVAPIIEECIYRGAVLRSLEKYGGWFAILVSGILFGLMHGNFYQIFMGAVVGIILGYLATEYSIKLTILLHMLNNTCVQIISDISSHASESTGNIFNIIILTVSTIALAMAFIYYKNHIKEWLKNNKMEKRMILRFFTSITIILVVAFDLLMVASDIGKF
>NZ_CP016091.1|WP_022746060.1|2372598_2373282_+|response-regulator-transcription-factor
MREKILIIEDDIEICNLLKEFLEENEYDIKTANTGINGMRELKNAAYNLVILDLMLPFKSGDEILRELRSFSNIPVIILSAKDMIHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCSSDTNIEKLNLTYKDITLNQEEKKVIVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLFESIWNEEYFSEDNTLNVHISNIRNKLKSANPNEEYIETIWGMGYKLHE
>NZ_CP016091.1|WP_140395246.1|2373540_2374473_+|ATP-binding-cassette-domain-containing-protein
MMTYVLETKNLTKKYKNTHALECINIKLEKGNIYGFVGQNGAGKTTLIRLITGLSFPTSGELYLFGQTGEKNLQDQRKRLGCMVETPALYPNMTAYQNLEIQRIQRGIPDKRVIEDTLELVGLMDTGKKKAKDFSLGMKQRLGIALALINDPEFLILDEPVNGLDPIGIVEVRKLIKRLNKEKGMTILISSHILDELYHTADHYIIISHGSILETLTQEELNEKCKKHIAINVDDVSIAATILEKELHTNNYKIMPDKTIRLYDYLDDIKSVSVALSRNNLIITGISLSGDSLEDYFIRRIGGDKCDQSV
>NZ_CP016091.1|WP_022746066.1|2374456_2375182_+|ABC-2-family-transporter-protein
MINLFRTEVYKLFLSKSFWIVFIMSTLFGITMTPDSHTFITGYENIGVSFYYACLLMVFPILLGAISFGNDFLDRTINNTVCAGHSRFQIFVCKVSAYFIGVNLVILFSPIVNVILNIILHRYTTVYFINEGNILAKTIITTSLLGMAMSSISIFAAFIFRDIGKTVGISVVIYFINISLLNSTNDIRTTIFRFLPLAQARLILYRPLIRNQFKEAGLIGIITILFFLSISYFCFKKTELR
>NZ_CP016091.1|WP_022746069.1|2375197_2375932_+|ABC-2-family-transporter-protein
MKKLLKMEMYEISHNYIYLLMIGIAIVYGAYSGYGDLEMNCYNLPIGGYEALLAMLYDAPGTCILISAFPALLIGKSFSNRTLISKISYGNSRGIVFFSKAISILIITTAVMLIYSFSGAFAVTIKYGWNAPAEVNIIILMKILICTTLLYLAIFSIIIFFGVIFRDNLKTVIVSVITILMNAIYLFVARTMNLPLYMHPMNLLRVILTHNSIFQFISFSLEAIILLGIILTLSYNIFRNCELK
>NZ_CP016091.1|WP_022746072.1|2375955_2376837_+|two-component-sensor-histidine-kinase
MLVILILSLLIILLILYVYYLKTQIKSIGKQLENISEGKTEKKIDISLLDKDIEYLAGSINRNINFQNQLRIEVLRNEQKLKDSIASISHDLRTPLTSIMGYLQLLEKSELSENQREKINIIKKKSEILHNLITSFFEITIIENDRMHIKLEKINMNNFLSDALLQNIISFKEAGIEPIFDLPNTTIFAQADKMILQRIIQNLISNMLKYTSSYAKISLTQKDHVELSFANKIQDSRKIDVNLLFEKFYTADRSRSSGSTGLGLYIVKLLAEKINAKVVAEIEENILILKIVF

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Crispr_ID: NZ_CP016091_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_5

2725111-2726540

Unclear

Consensus_repeat	Method
ATTTACATTCCTCTAGTTAAGATAAAAC	CRISPRCasFinder
ATTTACATTCCTCTAGTTAAGATAAAAC	CRT
ATTTACATTCCTCTAGTTAAGATAAAAC	PILER-CR

22 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of NZ_CP016091_5

>merge|NZ_CP016091|5|2725111-2726540|CRISPRCasFinder,CRT,PILER-CR
CTTCGCTTTCAATAAGTTAATATAAAACCGTATAGGCTCTTTAACACTTTTAACCTTTTTAGTATTTACATTCCTCTAGTTAATATAAAACATAAAGATAATCTTTACATATTTTACTTTTCTTTAAATTTACATTCCTCTAGTTAATATAAAACTGAAGCCAGAATATTTGTTGCACTAGATGTAATAGTATTTACATTCCTCTAGTTAATATAAAACTTTTAACGAATTACCAATTGGAGCTTTTCTTTTATTATTTACATTCCTCTAGTTAATATAAAACTGTGCTTCCTCTTTCAATTACATCCATAACTTCTCCATTTACATTCCTCTAGTTAATATAAAACAATATTAAATCTTACAACAACATTGGAAAAACGTACATTTACATTCCTCTAGTTAAGATAAAACTGAAGTTAAAGCTAAGTATGATGCTTTATTTAATGATTTACATTCCTCTAGTTAAGATAAAACTTGTCGGGAAGTGTTAATGCTCAAGGTGTATATTGATTTACATTCCTCTAGTTAAGATAAAACGCTTCAGAGTGAAAATGATGAATATATAGAAGCTTATTTACATTCCTCTAGTTAAGATAAAACTGGGGGGATAAATGGAATCAAGTTAATGTTATTGCAATTTACATTCCTCTAGTTAAGATAAAACAGACTTGCAAGCAACAAATGTTCCAGGACAAGTTCTATTTACATTCCTCTAGTTAAGATAAAACCAATTAGTAATGATATGCAAAACGCTATAGAGCTAATTTACATTCCTCTAGTTAAGATAAAACTTGTGAAGTGTATAATATTAGCCTTGATGAATTAGTATTTACATTCCTCTAGTTAAGATAAAACGTTTAATCCATTGAATAAAGCAGAATCTCTTATCTCATTTACATTCCTCTAGTTAAGATAAAACTTCTTCATTAATAAAATTCATATTAATGTTATCATTATTTACATTCCTCTAGTTAAGATAAAACACATTTGCAACATCAGATAGTCAAATGCAAATCGAATTTACATTCCTCTAGTTAAGATAAAACTGATGAACCTACAGCATATCAAGTGTATGGAAATAAATTTACATTCCTCTAGTTAAGATAAAACGAAACTGAATTAGCTAAAAAAATATTATCGTTGAAATTTACATTCCTCTAGTTAAGATAAAACATGATTTATGAAGCAATTCAGTATACTTCTTTCCACATTTACATTCCTCTAGTTAAGATAAAACTGCTTACAGTTGATTCATTTATCGACCAACCTATTTATTTACATTCCTCTAGTTAAGATAAAACTCGTGTTATATTTTTCATTTAGTTTCCCCCTTTATAGATTTACATTCCTCTAGTTAAGATAAAACTGGTTTTATTTTGGACAGAAGACCAAGCGTCATCAAATTTACATTCCTCTAGTTAAGATAAAAC

>NZ_CP016091|5|5|2725111-2726540|CRISPRCasFinder
CTTCGCTTTCAATAAGTTAATATAAAAC	CGTATAGGCTCTTTAACACTTTTAACCTTTTTAGT
ATTTACATTCCTCTAGTTAATATAAAAC	ATAAAGATAATCTTTACATATTTTACTTTTCTTTAA
ATTTACATTCCTCTAGTTAATATAAAAC	TGAAGCCAGAATATTTGTTGCACTAGATGTAATAGT
ATTTACATTCCTCTAGTTAATATAAAAC	TTTTAACGAATTACCAATTGGAGCTTTTCTTTTATT
ATTTACATTCCTCTAGTTAATATAAAAC	TGTGCTTCCTCTTTCAATTACATCCATAACTTCTCC
ATTTACATTCCTCTAGTTAATATAAAAC	AATATTAAATCTTACAACAACATTGGAAAAACGTAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGAAGTTAAAGCTAAGTATGATGCTTTATTTAATG
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTCGGGAAGTGTTAATGCTCAAGGTGTATATTG
ATTTACATTCCTCTAGTTAAGATAAAAC	GCTTCAGAGTGAAAATGATGAATATATAGAAGCTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGGGGGATAAATGGAATCAAGTTAATGTTATTGCA
ATTTACATTCCTCTAGTTAAGATAAAAC	AGACTTGCAAGCAACAAATGTTCCAGGACAAGTTCT
ATTTACATTCCTCTAGTTAAGATAAAAC	CAATTAGTAATGATATGCAAAACGCTATAGAGCTA
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTGAAGTGTATAATATTAGCCTTGATGAATTAGT
ATTTACATTCCTCTAGTTAAGATAAAAC	GTTTAATCCATTGAATAAAGCAGAATCTCTTATCTC
ATTTACATTCCTCTAGTTAAGATAAAAC	TTCTTCATTAATAAAATTCATATTAATGTTATCATT
ATTTACATTCCTCTAGTTAAGATAAAAC	ACATTTGCAACATCAGATAGTCAAATGCAAATCGA
ATTTACATTCCTCTAGTTAAGATAAAAC	TGATGAACCTACAGCATATCAAGTGTATGGAAATAA
ATTTACATTCCTCTAGTTAAGATAAAAC	GAAACTGAATTAGCTAAAAAAATATTATCGTTGAA
ATTTACATTCCTCTAGTTAAGATAAAAC	ATGATTTATGAAGCAATTCAGTATACTTCTTTCCAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGCTTACAGTTGATTCATTTATCGACCAACCTATTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TCGTGTTATATTTTTCATTTAGTTTCCCCCTTTATAG
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGTTTTATTTTGGACAGAAGACCAAGCGTCATCAA
ATTTACATTCCTCTAGTTAAGATAAAAC

>NZ_CP016091|5|2|2725111-2726540|CRT
CTTCGCTTTCAATAAGTTAATATAAAAC	CGTATAGGCTCTTTAACACTTTTAACCTTTTTAGT
ATTTACATTCCTCTAGTTAATATAAAAC	ATAAAGATAATCTTTACATATTTTACTTTTCTTTAA
ATTTACATTCCTCTAGTTAATATAAAAC	TGAAGCCAGAATATTTGTTGCACTAGATGTAATAGT
ATTTACATTCCTCTAGTTAATATAAAAC	TTTTAACGAATTACCAATTGGAGCTTTTCTTTTATT
ATTTACATTCCTCTAGTTAATATAAAAC	TGTGCTTCCTCTTTCAATTACATCCATAACTTCTCC
ATTTACATTCCTCTAGTTAATATAAAAC	AATATTAAATCTTACAACAACATTGGAAAAACGTAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGAAGTTAAAGCTAAGTATGATGCTTTATTTAATG
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTCGGGAAGTGTTAATGCTCAAGGTGTATATTG
ATTTACATTCCTCTAGTTAAGATAAAAC	GCTTCAGAGTGAAAATGATGAATATATAGAAGCTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGGGGGATAAATGGAATCAAGTTAATGTTATTGCA
ATTTACATTCCTCTAGTTAAGATAAAAC	AGACTTGCAAGCAACAAATGTTCCAGGACAAGTTCT
ATTTACATTCCTCTAGTTAAGATAAAAC	CAATTAGTAATGATATGCAAAACGCTATAGAGCTA
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTGAAGTGTATAATATTAGCCTTGATGAATTAGT
ATTTACATTCCTCTAGTTAAGATAAAAC	GTTTAATCCATTGAATAAAGCAGAATCTCTTATCTC
ATTTACATTCCTCTAGTTAAGATAAAAC	TTCTTCATTAATAAAATTCATATTAATGTTATCATT
ATTTACATTCCTCTAGTTAAGATAAAAC	ACATTTGCAACATCAGATAGTCAAATGCAAATCGA
ATTTACATTCCTCTAGTTAAGATAAAAC	TGATGAACCTACAGCATATCAAGTGTATGGAAATAA
ATTTACATTCCTCTAGTTAAGATAAAAC	GAAACTGAATTAGCTAAAAAAATATTATCGTTGAA
ATTTACATTCCTCTAGTTAAGATAAAAC	ATGATTTATGAAGCAATTCAGTATACTTCTTTCCAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGCTTACAGTTGATTCATTTATCGACCAACCTATTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TCGTGTTATATTTTTCATTTAGTTTCCCCCTTTATAG
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGTTTTATTTTGGACAGAAGACCAAGCGTCATCAA
ATTTACATTCCTCTAGTTAAGATAAAAC

>NZ_CP016091|5|3|2725174-2726540|PILER-CR
ATTTACATTCCTCTAGTTAATATAAAAC	ATAAAGATAATCTTTACATATTTTACTTTTCTTTAA
ATTTACATTCCTCTAGTTAATATAAAAC	TGAAGCCAGAATATTTGTTGCACTAGATGTAATAGT
ATTTACATTCCTCTAGTTAATATAAAAC	TTTTAACGAATTACCAATTGGAGCTTTTCTTTTATT
ATTTACATTCCTCTAGTTAATATAAAAC	TGTGCTTCCTCTTTCAATTACATCCATAACTTCTCC
ATTTACATTCCTCTAGTTAATATAAAAC	AATATTAAATCTTACAACAACATTGGAAAAACGTAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGAAGTTAAAGCTAAGTATGATGCTTTATTTAATG
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTCGGGAAGTGTTAATGCTCAAGGTGTATATTG
ATTTACATTCCTCTAGTTAAGATAAAAC	GCTTCAGAGTGAAAATGATGAATATATAGAAGCTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGGGGGATAAATGGAATCAAGTTAATGTTATTGCA
ATTTACATTCCTCTAGTTAAGATAAAAC	AGACTTGCAAGCAACAAATGTTCCAGGACAAGTTCT
ATTTACATTCCTCTAGTTAAGATAAAAC	CAATTAGTAATGATATGCAAAACGCTATAGAGCTA
ATTTACATTCCTCTAGTTAAGATAAAAC	TTGTGAAGTGTATAATATTAGCCTTGATGAATTAGT
ATTTACATTCCTCTAGTTAAGATAAAAC	GTTTAATCCATTGAATAAAGCAGAATCTCTTATCTC
ATTTACATTCCTCTAGTTAAGATAAAAC	TTCTTCATTAATAAAATTCATATTAATGTTATCATT
ATTTACATTCCTCTAGTTAAGATAAAAC	ACATTTGCAACATCAGATAGTCAAATGCAAATCGA
ATTTACATTCCTCTAGTTAAGATAAAAC	TGATGAACCTACAGCATATCAAGTGTATGGAAATAA
ATTTACATTCCTCTAGTTAAGATAAAAC	GAAACTGAATTAGCTAAAAAAATATTATCGTTGAA
ATTTACATTCCTCTAGTTAAGATAAAAC	ATGATTTATGAAGCAATTCAGTATACTTCTTTCCAC
ATTTACATTCCTCTAGTTAAGATAAAAC	TGCTTACAGTTGATTCATTTATCGACCAACCTATTT
ATTTACATTCCTCTAGTTAAGATAAAAC	TCGTGTTATATTTTTCATTTAGTTTCCCCCTTTATAG
ATTTACATTCCTCTAGTTAAGATAAAAC	TGGTTTTATTTTGGACAGAAGACCAAGCGTCATCAA
ATTTACATTCCTCTAGTTAAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_077394648.1\|2720403_2722125_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016091.1\|WP_077394659.1\|2734181_2734922_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|224499
NZ_CP016091.1\|WP_077394651.1\|2723549_2724278_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NZ_CP016091.1\|WP_077394657.1\|2731576_2732458_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP016091.1\|WP_077394647.1\|2716703_2718611_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP016091.1\|WP_077394650.1\|2722897_2723419_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP016091.1\|WP_077394646.1\|2714916_2716506_+\|asparagine-synthase-B	unknown	unknown	gnl\|CDD\|236513
NZ_CP016091.1\|WP_077394654.1\|2727977_2728493_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP016091.1\|WP_077394649.1\|2722354_2722870_-\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377957
NZ_CP016091.1\|WP_077394660.1\|2735092_2736031_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP016091.1\|WP_077394645.1\|2712113_2713382_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379258
NZ_CP016091.1\|WP_077394655.1\|2728509_2730795_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016091.1\|WP_077394656.1\|2730833_2731568_-\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NZ_CP016091.1\|WP_077395180.1\|2724514_2724643_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379340
NZ_CP016091.1\|WP_077394661.1\|2736443_2736755_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077395179.1\|2719165_2719774_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_077394653.1\|2726988_2727972_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP016091.1\|WP_022746602.1\|2710931_2711885_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP016091.1\|WP_077394658.1\|2732478_2734167_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NZ_CP016091.1\|WP_077394652.1\|2726723_2726987_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_077394648.1\|2720403_2722125_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.27062e-52
NZ_CP016091.1\|WP_077394659.1\|2734181_2734922_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.97336e-23
NZ_CP016091.1\|WP_077394651.1\|2723549_2724278_-\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	1.20277e-08
NZ_CP016091.1\|WP_077394657.1\|2731576_2732458_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.51441e-53
NZ_CP016091.1\|WP_077394647.1\|2716703_2718611_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.04096e-56
NZ_CP016091.1\|WP_077394650.1\|2722897_2723419_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.34146e-53
NZ_CP016091.1\|WP_077394646.1\|2714916_2716506_+\|asparagine-synthase-B	gnl\|CDD\|236513	PRK09431, asnB, asparagine synthetase B; Provisional.	0
NZ_CP016091.1\|WP_077394654.1\|2727977_2728493_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.91471e-57
NZ_CP016091.1\|WP_077394649.1\|2722354_2722870_-\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|377957	pfam08020, DUF1706, Protein of unknown function (DUF1706). This family contains many hypothetical proteins from bacteria and yeast.	5.0464e-71
NZ_CP016091.1\|WP_077394660.1\|2735092_2736031_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.19059e-39
NZ_CP016091.1\|WP_077394645.1\|2712113_2713382_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	2.08804e-14
NZ_CP016091.1\|WP_077394655.1\|2728509_2730795_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.58008e-58
NZ_CP016091.1\|WP_077394656.1\|2730833_2731568_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.10572e-19
NZ_CP016091.1\|WP_077395180.1\|2724514_2724643_+\|hypothetical-protein	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.65467e-12
NZ_CP016091.1\|WP_077395179.1\|2719165_2719774_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	0.000110389
NZ_CP016091.1\|WP_077394653.1\|2726988_2727972_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.8439e-154
NZ_CP016091.1\|WP_022746602.1\|2710931_2711885_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	8.93415e-21
NZ_CP016091.1\|WP_077394658.1\|2732478_2734167_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	3.3879e-16
NZ_CP016091.1\|WP_077394652.1\|2726723_2726987_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.22004e-26

>NZ_CP016091.1|WP_077395180.1|2724514_2724643_+|hypothetical-protein
MDSTNFETYGKQYDSAYNCHYSAIGYHPLLVFNGLAGDLLKA
>NZ_CP016091.1|WP_077394651.1|2723549_2724278_-|DUF1311-domain-containing-protein
MSDYMRRGIMIKNNKRIKLVIAAGVCAFIGLSATIMHLVNTNNNKNEQSAEVSKSEENPQSKDDEKNNEESASKPDVKQDTDKNKSESKSTNNVEKPTESKSKQTTGVKSKSSADSKTFTKVKGGGDYIKTLNAINSILDDPNLLDGSTLEMKSKVNQEYDLWDGYLNEIYKVISYNLPENEKRDLAQKENAWIKEKESKAKLAGDKYKGGTAEHLANSISAAKSTRDRCYELINTYMVTDD
>NZ_CP016091.1|WP_077394650.1|2722897_2723419_-|cysteine-hydrolase
MVLLVIDTQNLITNDKLYKFDTFVSNVKEIINKARKNNIEVIYVRHDDGEGSELTKGIDGFEIYEEFQPINGEKIFDKNVNSAFKGTGLLEYLRKKDEKEIIIVGLQTDYCFDATIKCGFEHGFHMIVPAYSNTTVNNKFMSAEQSYRYHNEFMWNGRYAECISFDETIKRMK
>NZ_CP016091.1|WP_077394649.1|2722354_2722870_-|ClbS/DfsB-family-four-helix-bundle-protein
MPDYKSKQELINEISSRAKLFIDEFSDIKETDKDKFIDGIDRTPVQMIAYQLGWLNLILDWEEQEKQGTTVITPHANYKWNNLGGLYENFYKQYENYTLHELCSMFEEAKEKIIHLTEGYTDMELFQSGGRKWASSTPANWALWKWIHTNTVAPFKSFRSKIRKWEKLNQS
>NZ_CP016091.1|WP_077394648.1|2720403_2722125_-|methyl-accepting-chemotaxis-protein
MITLFKNLKVIHKLILCFGIVITVVIISGIMSYHKMREVNGNLDVIYSESLVKLSTIQDIRAHMADLTSGSLILVNPDKKAVVDKTISDMNGLIEKDNELTKKYEALINNEDDRKIFAEYLENLNSYNNAKDKFFEVAKGGDYDDIKNEFAIFDGYRAKINDLLDEEITYNEKNAKSKYEDSQIKCKNALFITVMFTIVAIGLSIIFSYLLVKNIDDALKKIKQFAGRIAKFDFSSNINIVGKDEFGETSASLNEAQSNIVHLLKNINDNSDDLKSDSEELSLTSNELMSKMEHMNSACKTIRGTIEENSAASEEITASIEEINSAVNELAQRALTARNVASKAKDNAENIQEKGKIAVDTTENLYKGKREAILKAIEEGKIVNKIKHMAGAIESIADQTNLLALNAAIEAARAGENGKGFAVVADEVRKLAEESKSAVNDINENIGKIDEAFDNISSGSNDILVFINEKVIPEFNSFVESGDHYYRDADYINNLSEELASTLEEFSATIGQISEAAQNVALNEQKSSEEVEVVGDIVKDTTKIAVNVSGASQNQAKLAETLYDQVGKFKIKI
>NZ_CP016091.1|WP_077395179.1|2719165_2719774_-|hypothetical-protein
MAVLLLAFNPMGASARVSENEAKDLILRYGNDDIFSYDYNYLKTNLVFSEEVSKDKLDDGLLGKGLYKITKSNENLYYFQLGTDHYYVGVDSGQIYLYDGGSGCGTFHWIENNKVVKVWYWGRKEIDKDGHFGGWEYSDWQQNNGWVLLSDNTWSYYVDGLQKTGWIYDNGNWYYCYSNGQMAHDTTIAGYYLGPNGSWTNN
>NZ_CP016091.1|WP_077394647.1|2716703_2718611_-|HAMP-domain-containing-histidine-kinase
MKSIKSKLVLYLGVLIVIICIGLSVVSYINSSNALLSNLSKTLPSIAEQTASSVQGRIEGKLNTLESIAERSEIKDINNSWGNKMSILSDEGKRIGSVRLEIVDKNGDIKKADGRTSNVKERAYFENAISGKSNVSDPLVNNTDKSVVVIYAVPIKDNDNQIIGVLIDTQDGNDLSELTNRVKVGKTGYAFMIKKDGTNIASTDKNKVINMHNPVEEVKTNPSFRAIADIEIKMGNGETGMGEYFSGADKYVGYAPVEGTEWSVGVIVLKSEILSELDTLKSWTVLVSVLFLLIGFLIIYIISSNIVKGIKSASKHLDLLANGNLYKEVSIKYLKQKDEIGAMTSSMKTMQQSLENMIKKIEEDSAKKIKETLKIQDEIFANVSHELKTPLNVIFSANQLTELYVKNSLIEDDKEKILKNINIIKQNCYRFMKLINNIVDISKMNSGFFKVNLSNENIVDVTEEIVQSISQYINAKHINIIFDTNTEEKIIACDPEKIERVILNLISNAIKFTNTDGSIFVDVIDKGDTVEIDVKDTGIGIEEKHLKNIFERFEQVDKSISRNAEGSGIGLSLVKSIVNMHGGKISVESEVGKGSIFKIELPVKIVEEIEVCEQTKACNNKIEMINVEFSDIYSI
>NZ_CP016091.1|WP_077394646.1|2714916_2716506_+|asparagine-synthase-B
MCTIMCYTGTDMKHEKFAGSLQRTESRGPDMTEILTLPSGILGFQRLAIMDLSYSGMQPFTRKKDASICNGEIYGFRKLKDELMEKGHKFISDSDCEVLLPMYYEYGLDMFAKLDAEFATVIYDGENDTFIAARDPFGIRPLFYGYSESGKIMFASEAKNLVGLTDKIIAFPPGHYYADGKFTCYCDIAATEGEYCKDDLEVICKNIHDKLVTAIEKRMDADAPVGFLLSGGLDSSLVCSVAQKLYPEKKIKTFCIGMTEDAIDLKYAKEAADYIGSDHTAVYMTKEEVIDSLDEVIKLLGTFDITTIRASMGMYLLCKKIHEISDVKVLLTGEISDELFGYKYTDFAPNAGEFQKESQKRVRELYMYDVLRADRCISSNSLEARVPFGDLDFVKYVMAIDPEKKLNTYNMGKYLLRHAFEGDYLPDSILYRDKAAFSDAVGHSMVDYLKEYAEKCYSDDDFEKLCEKYAYHAKPFTKESLLYREIFEKHYPKQAEMIVDYWMPNKEWEGCNVNDPSARVLSNYGDSGK
>NZ_CP016091.1|WP_077394645.1|2712113_2713382_+|PucR-family-transcriptional-regulator
MNKEYDLYKEKYELYDSLFTQNNIDGILETVENFLNNPVFILDTSYRFISRSPLARDEISSTETHNEENYLLSDIVSLMKKDKCIDTIYKTTNSFFYYSDQSLIFCSIRINTLTIAYICVLQSKRKFKQEDLELTNILSNILSIQIQKEHLFISNSGLDEEYYLMDLLVNKIDNLEYAEKRLKHGNFILDKNLLILSIPYKQKYEDYRHNFGLKQIINGLKRILGNCISTYHKDMIIFLISNSHQQVISESIKSSLLEFLKLNNLRCGISFVFENLSYIKDYFYQSINTLQLSSYMKINENLNYFEDYVEYYLFHMANNTTNDLHKINLSTLVHPWIKKLIKFDEENKAELFITLKTYLENNRNANNTSSKLNIHRSTFFYRLNKIQNLLDTSFDNGNNLLKLELSFKLLSYKLHNYGKLND
>NZ_CP016091.1|WP_022746602.1|2710931_2711885_-|flavodoxin-family-protein
MTFTVLGITAGRKDSNSEILLKEALLACQEQGADVKMINLRDYNIIECTGCTACTHGMSSGKNVGCTLSKKDDKQAIMDVMLNVDAIIASAPTYDLMPTATFSKFMHRNLAYESAFLESIGAIEHRDRVAGLIAVGGSTRSWQSMALESMQATCFTNDFKVVDMYLATRVPAPKQCLLHDDMIKRAHKMGENIMTSLKTPVAERGWLGDEGMGWCPNCHSNALILGEPQWDGLYFPVECQVCGAGGNLEKTEEGKWKFVIQEDGLSRDRTDTEGRGHHVKEIIHTQGGFYTEENLAIVKEKFGKYKDLKFPTIEINK
>NZ_CP016091.1|WP_077394652.1|2726723_2726987_-|CRISPR-associated-endonuclease-Cas2
MFVIVTYDVNEKRVNRVRKVLKKYITWCQNSVFEGEITEGKLTKCMAEVKKYLIDSEDSLYIYRIPYSKNIKKDVIGVEKNLDELFL
>NZ_CP016091.1|WP_077394653.1|2726988_2727972_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGKDYYVFSSGRIKRKDNTIYFINADNEKRGIPIESIERIHFFSEIDLNSKFINYISQYDIILNFYNYYGFYSGSYYPRKKNISGFLVVEQAMAYKDNDERLFLAKSFIDSAIHHILRNMRRYDTVPDEYFEKIKNERETMMSVKTIQQLMGAEGRIRKMYYECFKYMLKNDFGFIHRNRRPPRDPLNALISFGNGVMYTAILGEMYQTQLDPTISYLHEPSTKRFSLILDISEIFKPLIVDSIIFSLINNRRLNNSDFDTAEEVCFLNEKGKKKFLTEFEKKMSTSIKHRKLNRSVSYRQLIKLESYKLIKHLIKDEKYKPLKAWW
>NZ_CP016091.1|WP_077394654.1|2727977_2728493_-|CRISPR-associated-protein-Cas4
MSFDFETYKTQGVKINYLYICKRKLWLFSKGISFERYDERVSQGKTVHENSYTREKSKEVEIDGNIKLDIIDKNFVREVKISSKMEKSDKMQLLYYLYYLNVFGIKRKGKINYVKERRVEEIELEDKDKIEIEEALKKIKIIENLDSPPSKINKPFCKKCAYYEFCYIVEE
>NZ_CP016091.1|WP_077394655.1|2728509_2730795_-|CRISPR-associated-helicase/endonuclease-Cas3
MENRALAKTKDEETIVGHTEKLLDNYNTLKKCYSDIKNLDWDLLELACIYHDMGKLNTKFQNKLMEKLKYPLLKDELEDIGEIPHGYLSPAFLNLEQIKEKYELDGLKILCQSIFYHHNREKPDNMDNIKRTIKEDLSKYINEFYYERVGKLEQLNTKYWKYVKRRLPNQEAEDDEEEEERRIITNKKFIMTKGLLNKIDYAASSGVDIEYKNDELEERTNEFFNNLNSEPNKLQKFMKENRDNNVIAIASTGIGKTEGALLWIGNNKGFFTLPLRVSLNAIYDRLKDKIKFNNDKLGLLHSESATEYMKRSEGEIDKEHLDETKQLSKALTVCTLDQILDFVFKCEGFELKLATLSYSKLVIDEIQMYSSDMLAYLLVAVKEINNMGGKFAIVTATFPPVLKSFMKYLEIDYKEAEEPFLKENNKGQTFERHRMKVLNEKINIDHIKINYENKRILVIVNTVKEAQRLYDELIGEGVPNVNIFHSKYIKKDRSEIEKKILEAGEVNNGIPKNPSQTIWITTQIVEASLDIDFDVLYTELSDLSGLFQRMGRVYRNRELDENTNVYVYTGGAGNPSGIRKSKKSIIDYDIYCASREAIQAFGDGEIREIDKMNLINKYFTYERLGNSNFYRDVKEKINYINNLKCFEVEKSEVKLRDILTVTIIPKVIYEENIESINENIEIYSCDNSSYSERIKSRDDILAYTVAIPQYEYEFACSKGLISNILKIGKFEEIKVVSFPYNEKGLQKPQNEDPSDIECLFV
>NZ_CP016091.1|WP_077394656.1|2730833_2731568_-|CRISPR-associated-protein-Cas5
MKKAVKLEIYQNLVNYKKPTSFQLKETYPLPPPSTVIGMVHFACDYKGYIPMQVAIQGKYHSKINDLYTRYEFAAASYEEGRHNVKLDSSTENKSYGMMRGISTTELLVDNILVLYICPDDQGRVEEIYNSFLYPREYLSLGRREDIVQVNSVEIIAIDEIELDDDVTLKYDAYIPMKFLEETNSNATIYNLTKDYELKTIKKGVQVRSWNKVKVAHCVEGKTVIDEGTKVMIEVQDKSVLFLI
>NZ_CP016091.1|WP_077394657.1|2731576_2732458_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MENKGLTISMIFEAESANYGESVGNVTALKKISRGSGDSYSYISRQAMRYNIINQMGVDTTPIKPDKEVLQFHPDATIEKYPEIDFFGYMKTVKPVRTRSAVVRLSNAVALETFNADTEFLTNKGLLDRYNGSAEDKDKKDGGNIAQSEIHKSYYAYTITIDLDKVGIDTNDNIEISNEEKKNRVNKLLDTIIFLYRDIRGRRENLSPILAVGGVYSIKNPFFENRLKVKNNKVSVETIEEILNLHEEVKTQTKVGLIKGIFNNDNVIEEKLNTIEMSSFFKGLKEKIEEYYK
>NZ_CP016091.1|WP_077394658.1|2732478_2734167_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MSVIKIELSDWLKNAGIIGLVNILESSSELKNKVNRRNNFIEFDSSELDNFHQLYFEYLINKYKAFISIEKIISKEEWIKDLLDKGINEKGLDSLNIYIKYLKERLKSASYKSAYEILSDSNYNLLDKSALLKELKLKKKQNISDINSDFKAQCNFILEIIEYLNKPQVRKIIAAKNVIYDVIQGFWSDVSFLNKNNSKLNMYECYKNDFVGPVKNYIEADFKKAKNTCFTCDNKIQKLSKPFAFDITWITKMGVDGSRKSSHFWNYYSDANICPICNLIYSCIPAAFSVINGKGLFINNNQSISNIISANAHVLNGNKTLDELEEETYFNIVDSMEQKSVEEAKSEVENIQVVKFDKNNASRPYTFNVLSKDKLLIIKNNKKILQQLLNKKVKLAKDYYLNIYSAVVDRIYNGKNLFDLLDTLTRLRISGEYKNSYVIYLLIKLNDDCIGMRGGSRVYQKNIDKFKDYGINLKKKYEKEGGNKIPGILYRLQNALKVKDVSRFMDTLINAYTSKKQPIPVDFVQALQDIDKFQTIGYAFLIGLQGMEVPRHNEENNINKEV
>NZ_CP016091.1|WP_077394659.1|2734181_2734922_-|CRISPR-associated-endoribonuclease-Cas6
MVNMRICIELNTTKIPLNYNYLILSLIKNNLSKENPLLFKKIYEKNEDYEFRTKPFTFSVKLEDFKITGDEVKLENHIFLTISTCDYIIGSVIYNSFLKEKIYEYQNKYKLEIGNVNILKEKNINSNQVVFKTLSPIIIRNKAGEFLSIDDSNYEKELNYIVDNNIKSYRGNGLKEELKFQPVLMKKRVIKEKISEFTEKTGKEIFYITGYDGIFKLTGDKEDLNLIYKMGVGFRRSSGGGCLEIV
>NZ_CP016091.1|WP_077394660.1|2735092_2736031_-|WYL-domain-containing-protein
MDRLGNVLKMIFILKTRKKVKIKDLSIELDVSERQVRRYKNEIYKYFNIESTTGSDGGYSLTDDYFPFKDILTENEINKLKFIINSLNYENSSELVEILDKLNLKIFKKEKKYLYNEEVIHYSKPKIRMEETTKIYNEISLAIENRNEIILEYCDNSGNYSKRKVQPYKLLLFKGEYYLVANCLLRNEIRYFKLTRIKEYIITGFKFECSINIDEFLKDQEKNSMGIYSGKEIDLELEITPPMANTIKERIWVDNQEIIEQSDGKIIFKARIKEGPELISWILSMAEYVKVISPESLRIEIKEKIEKMLKNF
>NZ_CP016091.1|WP_077394661.1|2736443_2736755_-|hypothetical-protein
MDENFFPITDKIPTLQTGALGTMLQNAHNDPQSLFNTLLSPEILNKIPSQLQQIMIPPLKSALADSLHTVFFVCTIIVLLGIPASFLLGESKIKNKTKMHGKK

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Crispr_ID: NZ_CP016091_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_6

4379494-4379666

Orphan

Consensus_repeat	Method
TCAATAACAATCCCAAACAGTATAACAAGTATAGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP016091_6

>merge|NZ_CP016091|6|4379494-4379666|PILER-CR
CCTATACTTGTTATACTGTCTGGAATTGTTATTGACGTTAATCCCATACAGTAAGTAAATGCAGAAGCCCCTATACTTGTTACACTGTTTGGGATTGTTATTGACGTTAAACCAACACAACCCAAAAATGCACTATCACCTATACTTGTTATACTGTTTGGGATTGTTATTGA

>NZ_CP016091|6|4|4379494-4379666|PILER-CR
CCTATACTTGTTATACTGTCTGGAATTGTTATTGA	CGTTAATCCCATACAGTAAGTAAATGCAGAAGCC
CCTATACTTGTTACACTGTTTGGGATTGTTATTGA	CGTTAAACCAACACAACCCAAAAATGCACTATCA
CCTATACTTGTTATACTGTTTGGGATTGTTATTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_022749724.1\|4366953_4367310_-\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP016091.1\|WP_022749739.1\|4369290_4370859_-\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	unknown	unknown	gnl\|CDD\|227016
NZ_CP016091.1\|WP_022749719.1\|4366237_4366837_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NZ_CP016091.1\|WP_077393859.1\|4367435_4367849_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP016091.1\|WP_022749764.1\|4385144_4385891_-\|methyltransferase	unknown	unknown	gnl\|CDD\|334594
NZ_CP016091.1\|WP_077395051.1\|4389367_4390147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022749747.1\|4372667_4375118_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP016091.1\|WP_022749786.1\|4391195_4391870_+\|DUF2225-domain-containing-protein	unknown	unknown	gnl\|CDD\|378340
NZ_CP016091.1\|WP_077395050.1\|4386879_4388214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226382
NZ_CP016091.1\|WP_077867539.1\|4381946_4383119_-\|response-regulator	unknown	unknown	gnl\|CDD\|226456
NZ_CP016091.1\|WP_140395238.1\|4375214_4375349_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP016091.1\|WP_155762477.1\|4375526_4375646_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022749734.1\|4368064_4369204_-\|acyl-CoA-dehydrogenase-short-chain-specific	unknown	unknown	gnl\|CDD\|173847
NZ_CP016091.1\|WP_022749743.1\|4370969_4371746_-\|short-chain-enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP016091.1\|WP_022749715.1\|4365048_4365864_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP016091.1\|WP_022749782.1\|4390237_4391029_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP016091.1\|WP_022749765.1\|4386102_4386435_+\|HesB-like-protein	unknown	unknown	gnl\|CDD\|188182
NZ_CP016091.1\|WP_022749790.1\|4391900_4392842_+\|methyl-accepting-chemotaxis-sensory-transducer	unknown	unknown	gnl\|CDD\|214599
NZ_CP016091.1\|WP_022749759.1\|4383148_4384681_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379902
NZ_CP016091.1\|WP_022749773.1\|4388267_4389350_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|336785

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_022749724.1\|4366953_4367310_-\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	1.78348e-26
NZ_CP016091.1\|WP_022749739.1\|4369290_4370859_-\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	gnl\|CDD\|227016	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism].	0
NZ_CP016091.1\|WP_022749719.1\|4366237_4366837_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	8.32426e-29
NZ_CP016091.1\|WP_077393859.1\|4367435_4367849_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.06703e-24
NZ_CP016091.1\|WP_022749764.1\|4385144_4385891_-\|methyltransferase	gnl\|CDD\|334594	pfam01564, Spermine_synth, Spermine/spermidine synthase domain. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.	4.44431e-06
NZ_CP016091.1\|WP_022749747.1\|4372667_4375118_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP016091.1\|WP_022749786.1\|4391195_4391870_+\|DUF2225-domain-containing-protein	gnl\|CDD\|378340	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225). This domain, found in various hypothetical bacterial proteins, has no known function.	2.9763e-93
NZ_CP016091.1\|WP_077395050.1\|4386879_4388214_-\|hypothetical-protein	gnl\|CDD\|226382	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown].	4.23267e-69
NZ_CP016091.1\|WP_077867539.1\|4381946_4383119_-\|response-regulator	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	2.01758e-84
NZ_CP016091.1\|WP_140395238.1\|4375214_4375349_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	7.51598e-09
NZ_CP016091.1\|WP_155762477.1\|4375526_4375646_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.14652e-05
NZ_CP016091.1\|WP_022749734.1\|4368064_4369204_-\|acyl-CoA-dehydrogenase-short-chain-specific	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP016091.1\|WP_022749743.1\|4370969_4371746_-\|short-chain-enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	1.20971e-134
NZ_CP016091.1\|WP_022749715.1\|4365048_4365864_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.95915e-96
NZ_CP016091.1\|WP_022749782.1\|4390237_4391029_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.18253e-87
NZ_CP016091.1\|WP_022749765.1\|4386102_4386435_+\|HesB-like-protein	gnl\|CDD\|188182	TIGR01911, conserved_protein, HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model. [Unknown function, General].	4.12127e-29
NZ_CP016091.1\|WP_022749790.1\|4391900_4392842_+\|methyl-accepting-chemotaxis-sensory-transducer	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.14309e-33
NZ_CP016091.1\|WP_022749759.1\|4383148_4384681_-\|ATP-binding-protein	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	4.59857e-51
NZ_CP016091.1\|WP_022749773.1\|4388267_4389350_-\|AAA-domain-containing-protein	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	3.78985e-09

>NZ_CP016091.1|WP_155762477.1|4375526_4375646_-|hypothetical-protein
MKTGWQIIDSKWYYFNSNGTMASDTVIDGYALGNDGALI
>NZ_CP016091.1|WP_140395238.1|4375214_4375349_+|sensor-histidine-kinase
MFERFYKGTKENYGLGLSISKNIIEKLNGQITAINLNSGASFII
>NZ_CP016091.1|WP_022749747.1|4372667_4375118_+|leucine--tRNA-ligase
MANYGTKIDKKWQKIWGENETYKFNPENLDKKLYTLEMFSYPSGAQLHAGHWFNYGPTDSWARLKRMQGYNVFQPMGFDAFGLPAENYAIKTGIHPQDSTLKNIETMEKQLKSMGAMFNWENEVVTCLPDYYKWTQWLFLKLYEKGLAYRKKAPVNWCPSCNTVLANEQVVDGVCERCSTEVVKKDLTQWFFKITDYADELLDKLDGLDWPEKTKSMQKHWIGRSYGAEVTFKVKDSKLDFNVFTTRVDTLNGVTYVVLAPENKLVDELTLPEYKDAVEEYKEAASKQSEIERQSVSKEKTGIFTGSYAINPINGKEVPIWISDYVLSTYGTGCVMAVPAHDERDFAFATKFNLPIERVITDKDNSDPELPYCEYGVLVNSGKFDGLTTDEAKKKIVEELEKDKLGSMKVNFRLRDWLVSRQRYWGAPIPVIYCDDCGIVPVPEKDLPVKLPYDVEFTPDGKSPLSKSEEFINTTCPICGGHAKREADTLDTFVCSSWYYLRYADNKNEDAPFDPEKINKILPVDKYVGGPEHACMHLLYARFITKALRDMGYLNFGEPFLSLTHQGLILGPDGLKMSKSKGNTISPDDYIKEYGADVFRMYLMFGFGYTEGGAWNDDGIKSVGKFVDRIERTLETCINLFSSNENTKDSIDSAEKELNFWKHTAIKGVTEDGNKMQFNTAIARLMEFVNALNKYLQEDIKNVSFLKETITDFLKLLAPFAPHFAEEQWSLLGNTSTIFNERLPEFDPSALVKDEVEIAIQINGKIKAKINIPSNLDEDGIKKASLENKTVQENTEGKNIIKVIVIKGRLVNIVVK
>NZ_CP016091.1|WP_022749743.1|4370969_4371746_-|short-chain-enoyl-CoA-hydratase
MENVIFKHENGIAEITINRPKSLNALNTQTLKELGQVINEISERKDIYTVIITGAGEKSFVAGADITEMKDKTAIEGREMAKLAQKVFSNIENMPQIVIAAVNGYALGGGCELSMACDIRLASTKAKFGQPEVGLGIIPGFAGTQRLPRLVGKGRAKELIFTTDMIDANEAYRIGLVNKIYEPNELIDKAKEMANKIMSKGTYAVSLAKSSINNGLNMDTESAYAFEADLFGLCFSTEDQTEGMSAFVGKRKASFKGC
>NZ_CP016091.1|WP_022749739.1|4369290_4370859_-|acyl-CoA:acetate/3-ketoacid-CoA-transferase
MRKVNVLTSREAAEMVKDEDLLVTGGFVGSSAPETLSSAIEKLFLETGHPKNITLVHAAGQGDGKGKGADHYAHEGMTKRVVAGHWNLAPKLGKMAIENKIEAYNLPQGTISELFRDIAGKRVGTITHVGLNTFVDPRISGGKLNEKTTEDIVKLINIEGEEKLLYKSFPINVCFIRGSFADEYGNISLEREVASLEDTSIAQACKNNGGKVIVQVEKIVESGTLDPRLIKIPGIYVDGIVVSKPEEHEQSFGCEFNPAVTGDIRVPLSTMKKAPLNERKIIAKRCTMELKADTIVNLGIGIPEVISSVANEEGIGEYMTLTVEAGPIGGVPQGGTAFGASINPEAIIDQPYQFDFYDGGGVDIAFLGLAQVDEHGNLNVSKFGPRIAGCGGFINITQNAKKVLFCGTFTAGGLKISTGDGKLKIEQEGRAKKFVKNVEQITFSGDYARKMNQEVMYVTERAVFELRKDGLYLTEIAPGIDLQKDVLDLMEFKPKMDGVPKLMDEKIFYDKLMGLKNKSNES
>NZ_CP016091.1|WP_022749734.1|4368064_4369204_-|acyl-CoA-dehydrogenase-short-chain-specific
MDFNLTEQQQRIVQVVREFAENEIKPKVIEYDQSGEFPIDTYKKMGQLGLIGVPYPREYGGGNGDYLSYVLAVEEISKVSGSLGISYSVSTSLCAGGIMNAASEEQKKKYLPDVLSGKKFGSFGLTEPNAGSDAGGCITTADKDGDYYILNGAKCFITNGPLSETFLVFALTDKTKGSKGLSAFIVEKGFEGFSIGKVEDKCGIRSAQVSELIFENCKVPAENLVGIEGKGFGIAMKTLDGGRIGVAAQGLGIAEGAFDVAKQYMKDRQQFGKPLWKNQYLAFKMAELELEIEQAKYILYKAAMDKQEGRPYSVSAAKAKLACTDAAMHVTTEAVQMLGGNGYMKEYNVERMMRDAKITQIYEGTNEIQKLIISGSIFR
>NZ_CP016091.1|WP_077393859.1|4367435_4367849_-|MarR-family-transcriptional-regulator
MMELNECINFLLTKAQQVVFQSLKARLAKFDVTPVQYGILKCLWDEEYQTPKQISEILSLDSSTITGLLDRMENKGLIQRVPNKNDRRTLNVVITEEGLKYRKEIEQIIDDLNKDFLERFSEEDQKQLKNALRTIAR
>NZ_CP016091.1|WP_022749724.1|4366953_4367310_-|four-helix-bundle-copper-binding-protein
MEEMESLIPEGNPMQSCIDICVKCSQICQECLNLCLQESDVKERMNCIKSLQDCSEICSTSACFMSRSSGNIRELCNVCAIICQNCAAECRAFKDDHCPKCADMCHKCADECEKMINM
>NZ_CP016091.1|WP_022749719.1|4366237_4366837_+|tyrosine-type-recombinase/integrase
MSKNTEPKIKYLTQKEALSLFNSIENSNSCHSIRDLAIFRLAYRCGLRASEISLLKLQDYNMLKGEIYCKRLKGSSNNTLRLDRKTKIVLDKYINENNITSDSQVIFTSQKNNPISRQTLDYLTKKYCSLARIEDKSKHHFHVLKHTTAVHLAECDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDKMYEKLDGKNEMV
>NZ_CP016091.1|WP_022749715.1|4365048_4365864_-|EAL-domain-containing-protein
MDRIERLQFSDRKSMIKDELKNVIEKNELYILYQPQINTLSNEITGIEALLRWDNSKLGSVSPVEFIPIAEDLDYIVDLGNWVMDKALRQAWVWKRKGYKFNTISVNVSPIQINKENFKKNLLNIINKYNIPRNFLEIEITEGIIIDINKEKIDMLTEIMNSGISIALDDFGTGYSSLSYLINIPVNTLKIDKIFIDNINSDKSKILIKGIVSLSKSLKYKIIVEGVETKEQLELLTNIGCNTIQGFYFSEPLSENEMENLLKINGGVNNI
>NZ_CP016091.1|WP_077867539.1|4381946_4383119_-|response-regulator
MMVYQIESGGMYIMKVILVDDDKAMILILKRIMNKIEGVEIVNTFNSSINVLEFIKDNCIDMVFLDISMPGENGMELARNIYHMSPSTDIVFITSHREYALDAFEIYAFDYIIKPVLKERVERTIKRAFEKRSLLIKKIPEKEKNISVYLLGGIDVSSKSLGTVKWMSAKSMELFIYLLLNRGRNISKNVIIEDVFQGMPLKNAENYLKTSVYQIRKAFEPHVSNSILILKNGYYKLECSEFYVDCMDFEKSVGRIKEINEENIKDALDTEKIFIGELLGDRIYYWSISENEKYLNLYLNLAIKLVKYLLNNRDLNNASYILKKIIKLDALNEEANCLLMRLFEAQKDKNSLIKHFQDYERMIKKEFGVNPGCEIINFYEKLLKSFSEHR
>NZ_CP016091.1|WP_022749759.1|4383148_4384681_-|ATP-binding-protein
MGSSFFGVLWLVFALCFTGKTDKIKKGTLALLYVISITILIVNWTNDFHHLFYKEMYMNNKGIFPILEVIHGPWYWIHIVYNYLVTLIGLIIFILDYINEVSVIRKQLLLIIISCVIPWIADVIYSLGLAPFDLDLCPIALSISGIMYSCAVVKFKLLKLTPIALEKVFSSMLEGVIILDNENNIVNFNNSSKGIIHELNYINQGDKQFEEVFKEYEDIIRAVNSNEYKEGLISLKNKNELKFYKMSINYIYEKNRNILGKILILSDITKEKKQQENLLELNTFKDNLFKVVSHDVKSPLGVLLSLLELLEDENDIYKEENREVLSEIKANVKNTYEMVENVLQWFGSQMDGMVYRNLTWKLFDIMKNSLMLLEKNAQLKGIKVNYEISRDIFVNVDREMFEIVVRNLFSNAVKFTNSGGYIKIWAEEVSGVVTIAVKDSGIGIENEKLDALFDNSNYCSTFGTAGEKGTGIGLMICKQFIEKNNGDIWAESSYGKGSTFYFTILSGKNI
>NZ_CP016091.1|WP_022749764.1|4385144_4385891_-|methyltransferase
MKPYNKEFVFQVMKKYNELINEGTSGNYRIVKNVVEENLQGYMYENKEQYDISVIQLLKDNVSLMRLSPKEIESSYETIKFAKGKVGIVGLGIGYVVQEIAKKNSVEEVTVYEISEDVIELYNQNFTKNEKIKIIKGDAFKAENQKFDFFYVDIYEYKLTSKVVKDYKIFNELHEIEEYSFWGLEHFLLSCKYEDIVWVYIPENWISMSKKIYESLDSSGYIKTYRPLEENKVREILMQFKEVLNADM
>NZ_CP016091.1|WP_022749765.1|4386102_4386435_+|HesB-like-protein
MKNITISEEAYNEFKAFLEENNISDFNIRINFAGFACSGPIFNISVSEATDDDEIEKINDISFIVEKTLIDQFGGFIILSTEENEGNGLSLKPVITPEGGCGGSCSGCHH
>NZ_CP016091.1|WP_077395050.1|4386879_4388214_-|hypothetical-protein
MDFNEKKEQVLKEIYLLDTHNQFNNSHKRQFFDLVEDVILYLLQSEDAFFGQFMLRIKRGIRFDLKVPIATIPQRDGFNMYFNPVLFLNCTKKEMAALFKHEIYHIMSSHFQRERKMKQSLNKEAVSVALDISINQYIKDLPAYSKKLESVNMEYKIILRENRSIEEYAEEIYKSIKSRINKNKISKDNDSKSEIDMTRAHELWEEIDISEEDIENLTKKTALSSYNKSTPEGLQKIIKAYEEKPEIPWQVVLKSILPTMKSGYKKTITRRNRRQSERLDLRGRLPENETEVIVAIDISASMKDDDLHKILVEILSITSNTTNKITIIECDNEIRNIYKLRSERDIKKRSKNNGSTEFTPVFKYIIDNNLRNVVLIYFTDGVGEKELGVKPINKKTLWVISGNEELSLNNSYGEIKRINKERKQIIEGNVGLQMVNEVIHEWAR
>NZ_CP016091.1|WP_022749773.1|4388267_4389350_-|AAA-domain-containing-protein
MNYSECLSTVDLIIESNDVPLIIGESGVGKTSLVKYIAKNNGYYLVTIDANLLKEGEIGGLPVVENRVTIYATHHKLTEIDRALKNDENANVILFIDELNRCDHAVAQELMNLILNREINGYVLDERVKVIAAMNPSNKNDGFYNSQYEVVDMDPAQEDRFVWVELDSDIKEWIKWAMSDNGNINEHIIEFLSTFPEYLHTPNTDETIKATPRSWERVSKAYNVYLNNKQKYPMNSFLNVVRGNVGANIANDFANFLINLKKPLIKVQDIFTNEILSFELKEKIEKENHSRLYILIKNALKYLEEIPTEKNINLFSELLNLYPRDLRLGIMKEIKRDYKDKIYENLLDNDMFLDAFFNIF
>NZ_CP016091.1|WP_077395051.1|4389367_4390147_-|hypothetical-protein
MEKENILLKLKSNPEYIKELSEADEELKLFIVKNNGNNIKYIKNPSKEVQKEAIKNTPLSIQYIENVNEEIGILCVRTLWNSLELINNPSETIIEESVQTKGWAIQFVKNPSEKLQILAVSKDYDAIKYITNPSEIVQLKAIENYYAAIRFIKNPTLKAKIKSIKSNGEAINYISNYDLDELKLFISENINVVKYIYESVDVETVVEVLMEKVKDETIEKKYIEDFLELEILEMDKINFIREYGSKNAKKILVDYKLSM
>NZ_CP016091.1|WP_022749782.1|4390237_4391029_-|GTP-pyrophosphokinase-family-protein
MAINDWKNFLMPYEQAVDELKVKLRSIRKEYRRKNEYSPIEFVTGRVKEVSSMLEKANKFEIPIDRVKYELEDIAGIRIMCQFVDDIDIVVELLRGRKDMQILYEKDYVRNVKESGYRSYHMIIKYPVNMAEGPVEILAEFQIRTLAMNFWATIEHSLNYKYKRHIPEQIKEKLKRSADAAFRLDEEMLEIKDEIKDAQKLFEVKSHLISNIMNSLLTLISLGKEAEVARYQKTLNKLIEEGEVWELNSLLFSVKREIEKYKE
>NZ_CP016091.1|WP_022749786.1|4391195_4391870_+|DUF2225-domain-containing-protein
MHDINILDHLFDKHITCPVCNSTFTTKTVKAKSPRIMSKDSDFFIRYKEINPYFYDVCICNSCGYAAMRSDFEKIRSYRKELVFSNITPKWQARQYPDILDEQLAIERYKLALLNAMLTDCPDSTKAMISLRIAWMYRLLNDNSQELSFMKQSLDGFIDAYTKELLPIYGLKRDSLTYLLGELNRKLGKDEEALLWYSKTIVNTNASFRIKEMARVGKSLIKNE
>NZ_CP016091.1|WP_022749790.1|4391900_4392842_+|methyl-accepting-chemotaxis-sensory-transducer
MSIFKKSNKEIIAPTVSVSTNADQHSINKKDISKEVNILKNQTSNLDSSIKNISSSISSLTKSTQSQCSEIHTAKNILSDFRNNMENLAINITNVHIKVLDTDKLADTGLDSITHLDTSLNDLESAFTVSTSTVNSLVSKLESVNSITDSISQIASQTNLLSLNAAIEAARAGEAGKGFSVVAGEVRKLAENSKLAVQSITSILEEIKQDILKASNAMNSGNSALTIQHNSLEDAKNTFSDIKTSIEDATDEITTCIVNLTTASEAKDNVISSVDNIANLYSEHESVVKEVATSIDTQASEIKQLNKSISNLS

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Crispr_ID: NZ_CP016091_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_7

4380587-4380911

Orphan

Consensus_repeat	Method
GGCTTAACGTCAATAACAATACCAAGTAGTGTAACAAGTATAGGA--------ATCG	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP016091_7

>merge|NZ_CP016091|7|4380587-4380911|PILER-CR
CGTTTTCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCCACTACAACCATAAAATGCAGCGATTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCCACTACAAAAATCAAATGTATCCATTGCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCCACTACAACCAGAAAATGCACCGTTTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCCACTACAACCAGAAAATGTACCGATTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC

>NZ_CP016091|7|5|4380587-4380911|PILER-CR
CGTTTTCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC	ACTACAACCATAAAATGCAG
CGATTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC	ACTACAAAAATCAAATGTAT
CCATTGCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC	ACTACAACCAGAAAATGCAC
CGTTTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC	ACTACAACCAGAAAATGTAC
CGATTCCTATACTTGTTACACTACTTGGTATTGTTATTGACGTTAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_022749724.1\|4366953_4367310_-\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP016091.1\|WP_022749739.1\|4369290_4370859_-\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	unknown	unknown	gnl\|CDD\|227016
NZ_CP016091.1\|WP_022749719.1\|4366237_4366837_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NZ_CP016091.1\|WP_077393859.1\|4367435_4367849_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP016091.1\|WP_022749764.1\|4385144_4385891_-\|methyltransferase	unknown	unknown	gnl\|CDD\|334594
NZ_CP016091.1\|WP_077395051.1\|4389367_4390147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022749747.1\|4372667_4375118_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP016091.1\|WP_022749786.1\|4391195_4391870_+\|DUF2225-domain-containing-protein	unknown	unknown	gnl\|CDD\|378340
NZ_CP016091.1\|WP_077395050.1\|4386879_4388214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226382
NZ_CP016091.1\|WP_077867539.1\|4381946_4383119_-\|response-regulator	unknown	unknown	gnl\|CDD\|226456
NZ_CP016091.1\|WP_140395238.1\|4375214_4375349_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP016091.1\|WP_155762477.1\|4375526_4375646_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022749734.1\|4368064_4369204_-\|acyl-CoA-dehydrogenase-short-chain-specific	unknown	unknown	gnl\|CDD\|173847
NZ_CP016091.1\|WP_022749743.1\|4370969_4371746_-\|short-chain-enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP016091.1\|WP_022749715.1\|4365048_4365864_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP016091.1\|WP_022749782.1\|4390237_4391029_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP016091.1\|WP_022749765.1\|4386102_4386435_+\|HesB-like-protein	unknown	unknown	gnl\|CDD\|188182
NZ_CP016091.1\|WP_022749790.1\|4391900_4392842_+\|methyl-accepting-chemotaxis-sensory-transducer	unknown	unknown	gnl\|CDD\|214599
NZ_CP016091.1\|WP_022749759.1\|4383148_4384681_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379902
NZ_CP016091.1\|WP_022749773.1\|4388267_4389350_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|336785

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_022749724.1\|4366953_4367310_-\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	1.78348e-26
NZ_CP016091.1\|WP_022749739.1\|4369290_4370859_-\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	gnl\|CDD\|227016	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism].	0
NZ_CP016091.1\|WP_022749719.1\|4366237_4366837_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	8.32426e-29
NZ_CP016091.1\|WP_077393859.1\|4367435_4367849_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.06703e-24
NZ_CP016091.1\|WP_022749764.1\|4385144_4385891_-\|methyltransferase	gnl\|CDD\|334594	pfam01564, Spermine_synth, Spermine/spermidine synthase domain. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.	4.44431e-06
NZ_CP016091.1\|WP_022749747.1\|4372667_4375118_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP016091.1\|WP_022749786.1\|4391195_4391870_+\|DUF2225-domain-containing-protein	gnl\|CDD\|378340	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225). This domain, found in various hypothetical bacterial proteins, has no known function.	2.9763e-93
NZ_CP016091.1\|WP_077395050.1\|4386879_4388214_-\|hypothetical-protein	gnl\|CDD\|226382	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown].	4.23267e-69
NZ_CP016091.1\|WP_077867539.1\|4381946_4383119_-\|response-regulator	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	2.01758e-84
NZ_CP016091.1\|WP_140395238.1\|4375214_4375349_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	7.51598e-09
NZ_CP016091.1\|WP_155762477.1\|4375526_4375646_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.14652e-05
NZ_CP016091.1\|WP_022749734.1\|4368064_4369204_-\|acyl-CoA-dehydrogenase-short-chain-specific	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP016091.1\|WP_022749743.1\|4370969_4371746_-\|short-chain-enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	1.20971e-134
NZ_CP016091.1\|WP_022749715.1\|4365048_4365864_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.95915e-96
NZ_CP016091.1\|WP_022749782.1\|4390237_4391029_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.18253e-87
NZ_CP016091.1\|WP_022749765.1\|4386102_4386435_+\|HesB-like-protein	gnl\|CDD\|188182	TIGR01911, conserved_protein, HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model. [Unknown function, General].	4.12127e-29
NZ_CP016091.1\|WP_022749790.1\|4391900_4392842_+\|methyl-accepting-chemotaxis-sensory-transducer	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.14309e-33
NZ_CP016091.1\|WP_022749759.1\|4383148_4384681_-\|ATP-binding-protein	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	4.59857e-51
NZ_CP016091.1\|WP_022749773.1\|4388267_4389350_-\|AAA-domain-containing-protein	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	3.78985e-09

>NZ_CP016091.1|WP_155762477.1|4375526_4375646_-|hypothetical-protein
MKTGWQIIDSKWYYFNSNGTMASDTVIDGYALGNDGALI
>NZ_CP016091.1|WP_140395238.1|4375214_4375349_+|sensor-histidine-kinase
MFERFYKGTKENYGLGLSISKNIIEKLNGQITAINLNSGASFII
>NZ_CP016091.1|WP_022749747.1|4372667_4375118_+|leucine--tRNA-ligase
MANYGTKIDKKWQKIWGENETYKFNPENLDKKLYTLEMFSYPSGAQLHAGHWFNYGPTDSWARLKRMQGYNVFQPMGFDAFGLPAENYAIKTGIHPQDSTLKNIETMEKQLKSMGAMFNWENEVVTCLPDYYKWTQWLFLKLYEKGLAYRKKAPVNWCPSCNTVLANEQVVDGVCERCSTEVVKKDLTQWFFKITDYADELLDKLDGLDWPEKTKSMQKHWIGRSYGAEVTFKVKDSKLDFNVFTTRVDTLNGVTYVVLAPENKLVDELTLPEYKDAVEEYKEAASKQSEIERQSVSKEKTGIFTGSYAINPINGKEVPIWISDYVLSTYGTGCVMAVPAHDERDFAFATKFNLPIERVITDKDNSDPELPYCEYGVLVNSGKFDGLTTDEAKKKIVEELEKDKLGSMKVNFRLRDWLVSRQRYWGAPIPVIYCDDCGIVPVPEKDLPVKLPYDVEFTPDGKSPLSKSEEFINTTCPICGGHAKREADTLDTFVCSSWYYLRYADNKNEDAPFDPEKINKILPVDKYVGGPEHACMHLLYARFITKALRDMGYLNFGEPFLSLTHQGLILGPDGLKMSKSKGNTISPDDYIKEYGADVFRMYLMFGFGYTEGGAWNDDGIKSVGKFVDRIERTLETCINLFSSNENTKDSIDSAEKELNFWKHTAIKGVTEDGNKMQFNTAIARLMEFVNALNKYLQEDIKNVSFLKETITDFLKLLAPFAPHFAEEQWSLLGNTSTIFNERLPEFDPSALVKDEVEIAIQINGKIKAKINIPSNLDEDGIKKASLENKTVQENTEGKNIIKVIVIKGRLVNIVVK
>NZ_CP016091.1|WP_022749743.1|4370969_4371746_-|short-chain-enoyl-CoA-hydratase
MENVIFKHENGIAEITINRPKSLNALNTQTLKELGQVINEISERKDIYTVIITGAGEKSFVAGADITEMKDKTAIEGREMAKLAQKVFSNIENMPQIVIAAVNGYALGGGCELSMACDIRLASTKAKFGQPEVGLGIIPGFAGTQRLPRLVGKGRAKELIFTTDMIDANEAYRIGLVNKIYEPNELIDKAKEMANKIMSKGTYAVSLAKSSINNGLNMDTESAYAFEADLFGLCFSTEDQTEGMSAFVGKRKASFKGC
>NZ_CP016091.1|WP_022749739.1|4369290_4370859_-|acyl-CoA:acetate/3-ketoacid-CoA-transferase
MRKVNVLTSREAAEMVKDEDLLVTGGFVGSSAPETLSSAIEKLFLETGHPKNITLVHAAGQGDGKGKGADHYAHEGMTKRVVAGHWNLAPKLGKMAIENKIEAYNLPQGTISELFRDIAGKRVGTITHVGLNTFVDPRISGGKLNEKTTEDIVKLINIEGEEKLLYKSFPINVCFIRGSFADEYGNISLEREVASLEDTSIAQACKNNGGKVIVQVEKIVESGTLDPRLIKIPGIYVDGIVVSKPEEHEQSFGCEFNPAVTGDIRVPLSTMKKAPLNERKIIAKRCTMELKADTIVNLGIGIPEVISSVANEEGIGEYMTLTVEAGPIGGVPQGGTAFGASINPEAIIDQPYQFDFYDGGGVDIAFLGLAQVDEHGNLNVSKFGPRIAGCGGFINITQNAKKVLFCGTFTAGGLKISTGDGKLKIEQEGRAKKFVKNVEQITFSGDYARKMNQEVMYVTERAVFELRKDGLYLTEIAPGIDLQKDVLDLMEFKPKMDGVPKLMDEKIFYDKLMGLKNKSNES
>NZ_CP016091.1|WP_022749734.1|4368064_4369204_-|acyl-CoA-dehydrogenase-short-chain-specific
MDFNLTEQQQRIVQVVREFAENEIKPKVIEYDQSGEFPIDTYKKMGQLGLIGVPYPREYGGGNGDYLSYVLAVEEISKVSGSLGISYSVSTSLCAGGIMNAASEEQKKKYLPDVLSGKKFGSFGLTEPNAGSDAGGCITTADKDGDYYILNGAKCFITNGPLSETFLVFALTDKTKGSKGLSAFIVEKGFEGFSIGKVEDKCGIRSAQVSELIFENCKVPAENLVGIEGKGFGIAMKTLDGGRIGVAAQGLGIAEGAFDVAKQYMKDRQQFGKPLWKNQYLAFKMAELELEIEQAKYILYKAAMDKQEGRPYSVSAAKAKLACTDAAMHVTTEAVQMLGGNGYMKEYNVERMMRDAKITQIYEGTNEIQKLIISGSIFR
>NZ_CP016091.1|WP_077393859.1|4367435_4367849_-|MarR-family-transcriptional-regulator
MMELNECINFLLTKAQQVVFQSLKARLAKFDVTPVQYGILKCLWDEEYQTPKQISEILSLDSSTITGLLDRMENKGLIQRVPNKNDRRTLNVVITEEGLKYRKEIEQIIDDLNKDFLERFSEEDQKQLKNALRTIAR
>NZ_CP016091.1|WP_022749724.1|4366953_4367310_-|four-helix-bundle-copper-binding-protein
MEEMESLIPEGNPMQSCIDICVKCSQICQECLNLCLQESDVKERMNCIKSLQDCSEICSTSACFMSRSSGNIRELCNVCAIICQNCAAECRAFKDDHCPKCADMCHKCADECEKMINM
>NZ_CP016091.1|WP_022749719.1|4366237_4366837_+|tyrosine-type-recombinase/integrase
MSKNTEPKIKYLTQKEALSLFNSIENSNSCHSIRDLAIFRLAYRCGLRASEISLLKLQDYNMLKGEIYCKRLKGSSNNTLRLDRKTKIVLDKYINENNITSDSQVIFTSQKNNPISRQTLDYLTKKYCSLARIEDKSKHHFHVLKHTTAVHLAECDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDKMYEKLDGKNEMV
>NZ_CP016091.1|WP_022749715.1|4365048_4365864_-|EAL-domain-containing-protein
MDRIERLQFSDRKSMIKDELKNVIEKNELYILYQPQINTLSNEITGIEALLRWDNSKLGSVSPVEFIPIAEDLDYIVDLGNWVMDKALRQAWVWKRKGYKFNTISVNVSPIQINKENFKKNLLNIINKYNIPRNFLEIEITEGIIIDINKEKIDMLTEIMNSGISIALDDFGTGYSSLSYLINIPVNTLKIDKIFIDNINSDKSKILIKGIVSLSKSLKYKIIVEGVETKEQLELLTNIGCNTIQGFYFSEPLSENEMENLLKINGGVNNI
>NZ_CP016091.1|WP_077867539.1|4381946_4383119_-|response-regulator
MMVYQIESGGMYIMKVILVDDDKAMILILKRIMNKIEGVEIVNTFNSSINVLEFIKDNCIDMVFLDISMPGENGMELARNIYHMSPSTDIVFITSHREYALDAFEIYAFDYIIKPVLKERVERTIKRAFEKRSLLIKKIPEKEKNISVYLLGGIDVSSKSLGTVKWMSAKSMELFIYLLLNRGRNISKNVIIEDVFQGMPLKNAENYLKTSVYQIRKAFEPHVSNSILILKNGYYKLECSEFYVDCMDFEKSVGRIKEINEENIKDALDTEKIFIGELLGDRIYYWSISENEKYLNLYLNLAIKLVKYLLNNRDLNNASYILKKIIKLDALNEEANCLLMRLFEAQKDKNSLIKHFQDYERMIKKEFGVNPGCEIINFYEKLLKSFSEHR
>NZ_CP016091.1|WP_022749759.1|4383148_4384681_-|ATP-binding-protein
MGSSFFGVLWLVFALCFTGKTDKIKKGTLALLYVISITILIVNWTNDFHHLFYKEMYMNNKGIFPILEVIHGPWYWIHIVYNYLVTLIGLIIFILDYINEVSVIRKQLLLIIISCVIPWIADVIYSLGLAPFDLDLCPIALSISGIMYSCAVVKFKLLKLTPIALEKVFSSMLEGVIILDNENNIVNFNNSSKGIIHELNYINQGDKQFEEVFKEYEDIIRAVNSNEYKEGLISLKNKNELKFYKMSINYIYEKNRNILGKILILSDITKEKKQQENLLELNTFKDNLFKVVSHDVKSPLGVLLSLLELLEDENDIYKEENREVLSEIKANVKNTYEMVENVLQWFGSQMDGMVYRNLTWKLFDIMKNSLMLLEKNAQLKGIKVNYEISRDIFVNVDREMFEIVVRNLFSNAVKFTNSGGYIKIWAEEVSGVVTIAVKDSGIGIENEKLDALFDNSNYCSTFGTAGEKGTGIGLMICKQFIEKNNGDIWAESSYGKGSTFYFTILSGKNI
>NZ_CP016091.1|WP_022749764.1|4385144_4385891_-|methyltransferase
MKPYNKEFVFQVMKKYNELINEGTSGNYRIVKNVVEENLQGYMYENKEQYDISVIQLLKDNVSLMRLSPKEIESSYETIKFAKGKVGIVGLGIGYVVQEIAKKNSVEEVTVYEISEDVIELYNQNFTKNEKIKIIKGDAFKAENQKFDFFYVDIYEYKLTSKVVKDYKIFNELHEIEEYSFWGLEHFLLSCKYEDIVWVYIPENWISMSKKIYESLDSSGYIKTYRPLEENKVREILMQFKEVLNADM
>NZ_CP016091.1|WP_022749765.1|4386102_4386435_+|HesB-like-protein
MKNITISEEAYNEFKAFLEENNISDFNIRINFAGFACSGPIFNISVSEATDDDEIEKINDISFIVEKTLIDQFGGFIILSTEENEGNGLSLKPVITPEGGCGGSCSGCHH
>NZ_CP016091.1|WP_077395050.1|4386879_4388214_-|hypothetical-protein
MDFNEKKEQVLKEIYLLDTHNQFNNSHKRQFFDLVEDVILYLLQSEDAFFGQFMLRIKRGIRFDLKVPIATIPQRDGFNMYFNPVLFLNCTKKEMAALFKHEIYHIMSSHFQRERKMKQSLNKEAVSVALDISINQYIKDLPAYSKKLESVNMEYKIILRENRSIEEYAEEIYKSIKSRINKNKISKDNDSKSEIDMTRAHELWEEIDISEEDIENLTKKTALSSYNKSTPEGLQKIIKAYEEKPEIPWQVVLKSILPTMKSGYKKTITRRNRRQSERLDLRGRLPENETEVIVAIDISASMKDDDLHKILVEILSITSNTTNKITIIECDNEIRNIYKLRSERDIKKRSKNNGSTEFTPVFKYIIDNNLRNVVLIYFTDGVGEKELGVKPINKKTLWVISGNEELSLNNSYGEIKRINKERKQIIEGNVGLQMVNEVIHEWAR
>NZ_CP016091.1|WP_022749773.1|4388267_4389350_-|AAA-domain-containing-protein
MNYSECLSTVDLIIESNDVPLIIGESGVGKTSLVKYIAKNNGYYLVTIDANLLKEGEIGGLPVVENRVTIYATHHKLTEIDRALKNDENANVILFIDELNRCDHAVAQELMNLILNREINGYVLDERVKVIAAMNPSNKNDGFYNSQYEVVDMDPAQEDRFVWVELDSDIKEWIKWAMSDNGNINEHIIEFLSTFPEYLHTPNTDETIKATPRSWERVSKAYNVYLNNKQKYPMNSFLNVVRGNVGANIANDFANFLINLKKPLIKVQDIFTNEILSFELKEKIEKENHSRLYILIKNALKYLEEIPTEKNINLFSELLNLYPRDLRLGIMKEIKRDYKDKIYENLLDNDMFLDAFFNIF
>NZ_CP016091.1|WP_077395051.1|4389367_4390147_-|hypothetical-protein
MEKENILLKLKSNPEYIKELSEADEELKLFIVKNNGNNIKYIKNPSKEVQKEAIKNTPLSIQYIENVNEEIGILCVRTLWNSLELINNPSETIIEESVQTKGWAIQFVKNPSEKLQILAVSKDYDAIKYITNPSEIVQLKAIENYYAAIRFIKNPTLKAKIKSIKSNGEAINYISNYDLDELKLFISENINVVKYIYESVDVETVVEVLMEKVKDETIEKKYIEDFLELEILEMDKINFIREYGSKNAKKILVDYKLSM
>NZ_CP016091.1|WP_022749782.1|4390237_4391029_-|GTP-pyrophosphokinase-family-protein
MAINDWKNFLMPYEQAVDELKVKLRSIRKEYRRKNEYSPIEFVTGRVKEVSSMLEKANKFEIPIDRVKYELEDIAGIRIMCQFVDDIDIVVELLRGRKDMQILYEKDYVRNVKESGYRSYHMIIKYPVNMAEGPVEILAEFQIRTLAMNFWATIEHSLNYKYKRHIPEQIKEKLKRSADAAFRLDEEMLEIKDEIKDAQKLFEVKSHLISNIMNSLLTLISLGKEAEVARYQKTLNKLIEEGEVWELNSLLFSVKREIEKYKE
>NZ_CP016091.1|WP_022749786.1|4391195_4391870_+|DUF2225-domain-containing-protein
MHDINILDHLFDKHITCPVCNSTFTTKTVKAKSPRIMSKDSDFFIRYKEINPYFYDVCICNSCGYAAMRSDFEKIRSYRKELVFSNITPKWQARQYPDILDEQLAIERYKLALLNAMLTDCPDSTKAMISLRIAWMYRLLNDNSQELSFMKQSLDGFIDAYTKELLPIYGLKRDSLTYLLGELNRKLGKDEEALLWYSKTIVNTNASFRIKEMARVGKSLIKNE
>NZ_CP016091.1|WP_022749790.1|4391900_4392842_+|methyl-accepting-chemotaxis-sensory-transducer
MSIFKKSNKEIIAPTVSVSTNADQHSINKKDISKEVNILKNQTSNLDSSIKNISSSISSLTKSTQSQCSEIHTAKNILSDFRNNMENLAINITNVHIKVLDTDKLADTGLDSITHLDTSLNDLESAFTVSTSTVNSLVSKLESVNSITDSISQIASQTNLLSLNAAIEAARAGEAGKGFSVVAGEVRKLAENSKLAVQSITSILEEIKQDILKASNAMNSGNSALTIQHNSLEDAKNTFSDIKTSIEDATDEITTCIVNLTTASEAKDNVISSVDNIANLYSEHESVVKEVATSIDTQASEIKQLNKSISNLS

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Crispr_ID: NZ_CP016091_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_8

4494981-4495073

Orphan

Consensus_repeat	Method
TTTATTACATATATAGTTATATATGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016091_8

>merge|NZ_CP016091|8|4494981-4495073|CRISPRCasFinder
TTTATTACATATATAGTTATATATGTATGACGTTGCAACTAGTGTAAAAGTCGAATTAATTGCACGTTTATTACATATATCGTTATATATGTA

>NZ_CP016091|8|6|4494981-4495073|CRISPRCasFinder
TTTATTACATATATAGTTATATATGTA	TGACGTTGCAACTAGTGTAAAAGTCGAATTAATTGCACG
TTTATTACATATATCGTTATATATGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_077395081.1\|4489265_4490939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP016091.1\|WP_022750045.1\|4488905_4489175_-\|DUF3343-domain-containing-protein	unknown	unknown	gnl\|CDD\|378728
NZ_CP016091.1\|WP_022750055.1\|4492241_4492838_+\|DUF4489-domain-containing-protein	unknown	unknown	gnl\|CDD\|379710
NZ_CP016091.1\|WP_022750083.1\|4503501_4504548_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022750037.1\|4483622_4484585_+\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|366248
NZ_CP016091.1\|WP_077395083.1\|4495278_4496418_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|131032
NZ_CP016091.1\|WP_022750087.1\|4504644_4507539_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_077395082.1\|4493222_4494962_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224152
NZ_CP016091.1\|WP_077395086.1\|4508108_4509737_-\|choline-binding-protein-A	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022750051.1\|4491190_4491967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022750039.1\|4484865_4486461_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP016091.1\|WP_022750033.1\|4483082_4483367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077395080.1\|4487225_4488692_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225926
NZ_CP016091.1\|WP_022750028.1\|4480283_4482794_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP016091.1\|WP_022750099.1\|4512461_4512869_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP016091.1\|WP_022750076.1\|4500753_4501728_-\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_CP016091.1\|WP_077395085.1\|4501924_4503070_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_140395202.1\|4498063_4500316_+\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|100796
NZ_CP016091.1\|WP_077395087.1\|4510117_4512235_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022750067.1\|4496966_4497755_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_077395081.1\|4489265_4490939_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	3.72162e-14
NZ_CP016091.1\|WP_022750045.1\|4488905_4489175_-\|DUF3343-domain-containing-protein	gnl\|CDD\|378728	pfam11823, DUF3343, Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.	1.10583e-17
NZ_CP016091.1\|WP_022750055.1\|4492241_4492838_+\|DUF4489-domain-containing-protein	gnl\|CDD\|379710	pfam14879, DUF4489, Domain of unknown function (DUF4489).	1.04972e-27
NZ_CP016091.1\|WP_022750083.1\|4503501_4504548_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.24197e-15
NZ_CP016091.1\|WP_022750037.1\|4483622_4484585_+\|DNRLRE-domain-containing-protein	gnl\|CDD\|366248	pfam00688, TGFb_propeptide, TGF-beta propeptide. This propeptide is known as latency associated peptide (LAP) in TGF-beta. LAP is a homodimer which is disulfide linked to TGF-beta binding protein.	5.19731e-06
NZ_CP016091.1\|WP_077395083.1\|4495278_4496418_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|131032	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. [Unknown function, Enzymes of unknown specificity].	5.32641e-175
NZ_CP016091.1\|WP_077395082.1\|4493222_4494962_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224152	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism].	7.99053e-47
NZ_CP016091.1\|WP_077395086.1\|4508108_4509737_-\|choline-binding-protein-A	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.59639e-24
NZ_CP016091.1\|WP_140395202.1\|4498063_4500316_+\|DNRLRE-domain-containing-protein	gnl\|CDD\|100796	PRK01156, PRK01156, chromosome segregation protein; Provisional.	6.8946e-05
NZ_CP016091.1\|WP_022750039.1\|4484865_4486461_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP016091.1\|WP_077395080.1\|4487225_4488692_-\|hypothetical-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.95319e-07
NZ_CP016091.1\|WP_022750028.1\|4480283_4482794_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.35346e-17
NZ_CP016091.1\|WP_022750099.1\|4512461_4512869_-\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	5.26086e-23
NZ_CP016091.1\|WP_022750076.1\|4500753_4501728_-\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	7.07377e-82
NZ_CP016091.1\|WP_077395085.1\|4501924_4503070_+\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.70135e-14
NZ_CP016091.1\|WP_022750087.1\|4504644_4507539_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.30639e-26
NZ_CP016091.1\|WP_077395087.1\|4510117_4512235_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.93703e-32

>NZ_CP016091.1|WP_077395082.1|4493222_4494962_-|FAD-dependent-oxidoreductase
MNSYKNTDSPYQIDNPSESERYTMLEYILKIQNRSDDLNNIIDLMSPPKDITNICKAGCAKNIKVAVIGAGEAGLAAAFELRKIGCNIVLFEASQRIGGRVYTHYFDRNRKYYGELGPMSIPISHETTWHYINLFKLETSPFVDYNYNSLFYVKDERAVNDASGISAKNNIYPKFNLSKIEGKKSWRELRGRICKKYLSSFSAELRKELIQVKPEYSKNIKEIDKLNYRNAYENVDLSQDSISMLGYLDGKEQFFSLSLIEMLQKYYTADFEYNYRITDGMINLPQSLYEALCDKSEEGYKDINKEQLGKVEIKMGFPVSGIYDSSSKDKVILKYMDCRDNKETCEEFDYVICAIPFSSLRRIQIEPLFTNRKMQAISEMNYEIAHKIYLYLKNRFWEMGNASTKIVGGSSHTDLPLVSIYYPSDHAKAVANKYGKWILKHGASYKEAGALLAGYSWGQDAVRLGNENPELLLDDVMRYVERVHGLSLHYLDDKLIDYKSLIWSDVQYIWTGGALSKPGDKTLFSYNVTVPEMEDKVFFAGEHISQKHVSQQGALQSGMIAANEIAKRINDNAVNIKRS
>NZ_CP016091.1|WP_022750055.1|4492241_4492838_+|DUF4489-domain-containing-protein
MNSLSHGNCGGTAGTGNICPNPCPPRFAACAAGAEELHPLPCPALLQCGEASNPRITSVFTPSTTTPSISLAEVEIDTTCLCFPNIKIEFSTLINADITGPAGSVTIRLSRSCNSGTNNCNGGTSKTLRSYTINLSGVGGSTITTPFSFVFCSENVPSKDCTYFVDIVSANPGPATGSFIEFTNTDIAALAVGCARIC
>NZ_CP016091.1|WP_022750051.1|4491190_4491967_+|hypothetical-protein
MSVNLKRFSPRPGLVNKQGRLPDPSELVCIEVPKIFDQCLIKKCLVYGEGPDTNTTDFELRSNPLTDPKRYIGSRDFNLTLLSVDKIPLMGNPNFKKIIISYKISFCADYIDANGVNKSELYEINRTDVIGKFYCPDSIAQISASFVPGNQPQDLDSNIIKLEMVADALAGELLKDEAGKEVLDITLGYYIIVKCELIVQLLIPTYDYCPVPKAPCEEEPEEDPCEIFEKAPIPKFYPDQNLDPLFPDCDDGNRNEEM
>NZ_CP016091.1|WP_077395081.1|4489265_4490939_-|hypothetical-protein
MNCVCPWIYVDYRNNIWDFFKNGNKELCYKIMYGEGKWSKESLIDKEIRGFAIYIEDDETIHIVYSNIKGELKYCTMKNKRWVGMTLYQIDVDEFEIQSLKIRIIRDEMHIFYLLIGKDGSDHGVLMHCIWNGRETKVNTLSDIILVPNINEHYMLNINENNDIDTFFITDEGDEISLNYCSFQNHIWSSVKRLYGIQGEEIDFEVLVDKEEINILNKSREDAIYFLDHVRIDKGGIIQEFRVYESSKELSEPLVFVKDRKLYSCWLEQGEILYSVFDNEKWRKAYHFDRGNELPVSRYNCFICSDGGSSIKAMKAYATDEPDLYLFVPSQFVINRKESLKDERIKVTEDLSSEGEEVQRLKLKLSRMKLEKKDLENKIDSLNMQLKKRLKSIHEYEEEFVRLVEQKRKADENYKVFLELQQNIQKKLENTNKQLLEERNVKASIENELKEYKEKNILIKQQVEMLSTENERLNKEIELEKENIQEKLEELNTNLLGERNIKASIESELKECKEENSLIKQQVEMMSEENKRLNKELEFERNQSIMERLLKRRSNGI
>NZ_CP016091.1|WP_022750045.1|4488905_4489175_-|DUF3343-domain-containing-protein
MATEEYDYIMTFTSHNRALYMYQRLTGRNIKVKLVTAPNKINISCTQAVKFKEIDIEIIQTELKRNNIYPTATFKIIKDGKNETYELVN
>NZ_CP016091.1|WP_077395080.1|4487225_4488692_-|hypothetical-protein
MVDKKEKMIYYVSNLGISTVSIIDGDGYHIIKEVEIGPRPQNIIVDESNNIYIASDRNGKVTVIHDLYDCIKTWDMPNNGNIQVDSIAHKIYVCNTDEVCIYDLRTGEKIGSLRGFIAADSIELNKNKKRLFVLDVLQNEIKVYDTSNLNLIKIYKDIGNSPKYILIEENENYIYIANREKIYILNIENENISFIDLEKRSIITSLEQSGTFLYVANDGLHRIEVIDTLKRKCIANITTTMQKVKRIRLSPDKKILLVIGQNIEGKGVINRIDVSGNVILDTFDLEKKNGIPYDIGVAIQRRLPKKEEALSIIDSEDTLKKENGTTILAKKVLSTYQEKIIFQDVSIKLTSEEEEIINIDEIRFKKCEIINETRNREIIDNRKEYSMLKYNFYIPYYIWYKDEHGRKYIDEGKIEGIQNATLYIPAYEEQQGVEFVVNSFTKLTSNPEIINNDLKFSVSVLISTRAIVDELVFIPFFKNCDVQACENK
>NZ_CP016091.1|WP_022750039.1|4484865_4486461_-|peptide-chain-release-factor-3
MADYINEIEKRRTFAIISHPDAGKTTLTEKFLLYGGAIRLAGSVKARKASKHAVSDWMEIEKQRGISVTSSVMQFNYNDHCINILDTPGHQDFSEDTYRTLMAADSAVMVVDAAKGIEDQTRKLFHVASLREMPIFTFINKMDREAKDPFQLLDDIENELGIKTYPMNWPIGSGKEFKGVYERDNNRIIAFNGGNHGQNEVEAIEGSPDDPKFREILGDALHDKLMEDIELLDIAGDELDLDAVRRGELTPVFFGSALTNFGVEPFLEHFLEMTTSPLARNSSAGTIDPFEDKFSAFVFKIQANMNKAHRDRIAFMRICSGKFNKGEDVYHMQGGKKIKLAQPQQFMAQDREIVEEAYAGDIIGVFDPGIFSIGDTLCSPSKKFKFEGIPTFAPEHFARVRPVDTMKRKQFIKGVTQIAQEGAIQVFKETHIGMEEIIVGVVGVLQFEVLEYRLNNEYNVDVKMDRLDYRFVRWIENKDVDMDSLNLTSDTKKVKDLKDRNLLIFQNDWGISWALDHNKGLILSGVGKSED
>NZ_CP016091.1|WP_022750037.1|4483622_4484585_+|DNRLRE-domain-containing-protein
MKSITIPAIKSLSVTNKYSDKSLNEDKIIVGSDSNYNYYSYLFWDISSIPANAIVHNAKLTLFKTDNFYYDTSKKFSISPLYEYFSTYTTYNNSPNYDHYTVINFYPLTDNISVTIDITTIVSSWVKNSLKNKGIILYGRNEDILTSFGSVKSSDSYLVPFIIVNYEPYSSNKCCKKECNNKCSQDCCCKKNCNGEYFKDDCCEKYIKICKKELEAILFKVCKEACGSNCNPYPPNTSITRTVRVTGTVAPASVYYIVVDLQVTRASSGQINHYYVSDEYDNSLNDTPLPIDKTYNIAVSPPIQSGDTEDVILYGSYKGF
>NZ_CP016091.1|WP_022750033.1|4483082_4483367_+|hypothetical-protein
MASFDTPQNSTIQTIYATGTIPAHNDAGFIEIQAVASRNGGHETFYKTFQIAASATATTARAWSGAGNYQIVITPKLFGTQSVSSTTVVNSFKH
>NZ_CP016091.1|WP_022750028.1|4480283_4482794_-|glycosyltransferase
MKDNLGNITKQSKDELINTTENLKEDVSGIVKDKIKLAFFVKMGLDSFLGDIIEGLSQEYEIKKIITIEYKQIEDGMQWADICWFEWCDELIAYGSKLELAKEKKIICRLHSYEAFTDYINNVNWSNVNRLIVVCEHIKSFIIKNFSIDEKIVSIIPNGIDEKRWRFKERENGFNIAYVGYINYKKGPMLLLHTFKAIYETDHRYKLYIAGIFQDNRYVLYYNQMIHEFGLENNVVYEGWQNDLDTWLEDKNAILCTSVLESQNMSVMQAMCKGIKPIIHNFVGARLIYPSQYVWNTITEAVEMISDKNYTSKVYRAFIKERYSLNDQLMKIKDLLISLPEKMSKGNLNYINSNDLKKSSDQVDLMKTKFTVNSDDITNTEALFDYLLSINDEESYMKYLSEWFIRSKYELTFKFNYYYGNMYRRFTSYSRFKYMQKNVYEEMDKIGGKILEENYLTYFNNKKISLKENKRKILFILNGLDIHQSVTQFFINYLQSSENIKHRYSVLSLLNKNEFNNSKESIDYFNKLNVNLFVPISNCIEDKIKEFYIYISEGNFDYVVYQSLYFAPIGVLLYPLLKKVCKIIGKIQFQQPEDYFDEKLDFCYTYIKKDNCCKNIFELISPINTELVDKNLDIRTLFNIDRKKKVVISIGRPIKYKNNEFWNFAIKLINEIHDICLVVFGGDYSEFKQYVPNKLIEEYKVIFAGFNLEASSYLKSCDFYLNSYPGGGYSLEEAYYAELPIITFCKEENDEAFNVMNASYMAPAYLYNNAKTIFPKTGDFDQLLSYSKKLIQDDSFRNTIKINRKIESNNLKFEYFVKEFEKYMDNIANNNGRNNK
>NZ_CP016091.1|WP_077395083.1|4495278_4496418_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MIYLDNAATSFPKPSEVYEEVLKCMKNYAANPGRGSYEIAVKAASKIMETREEICNLFNIASLFNLIFTSNATEALNIGIKGILEKGDHVISTVIEHNSVLRPLHSLSEKGVDVTLISSDKAGYVSIKDIKDEIKKNTKMIIISHISNVLGSIQDIKNIGNLSKSNGIIFMVDASQSAGIIPTDVEREHIDLLAFSGHKGLLGPQGTGCLFIREGIKLKNFKEGGTGSNSHFMIQPDFLPDKFESGTLNTPGIAGLGEGVKFIKRIGIDSIQKYEEELTSYLLEEIKRLSYIKIYGSYSGNKRGPVVSFNIEGVDASIVGEELDKEGIAVRTGYHCAALIHDVIGTEYAGTVRVSPGYFNTFDDIEKLIVAIMRIYKVR
>NZ_CP016091.1|WP_022750067.1|4496966_4497755_-|hypothetical-protein
MSINFKKFSPRPGIVNKQGRLPDPSELVCVEVPKVFDQCLIKRCLVYGEGPDTNTTDCELRSNPLKDPKRYIGSRDFNVKLISVEEIPNNGNPDFKKIILSYMISFYADYIDADGITKSELYEINRTDTIGKFYCPDSIAQISASCIHGNHDKDLDCNILKLEMVADALAGELLTDEGGNDVLDITLGYYIIVKCELVVQLLIPTYDYCPVPGEPCAEEEPEDVCVQFENAPVPKFYPDQNLRPLFSESDDDYEDDDYKDNN
>NZ_CP016091.1|WP_140395202.1|4498063_4500316_+|DNRLRE-domain-containing-protein
MLLENSIKINCNDATYVCKFHSNTNFSKNNSLLVGGFTNKLSSFNLYRSILNFHIPDLKSDSIKEAYLFLFLEDIKYIHNGPENLILLGNSENIDIPNANWTNFPNNNFTKPVILSMPNTYVGSYLKVDVTSIIKSLVKFNMNYNIILTPPNKNSNAIFKLASSMSYTPPYLNIVTYAEDNIEFSEASEITENIEAIENDTYENTSENVTKNINDKSSVLDENQSDILPSIKNELINILLKKNIALNQSLINYITNEFNKQTSVLASIRSTINDADNFITIKKALDSHTNNLNNQNLILDFIKDKVNNNKSFVVTEDLLNKIVSTLNEQDSTLALIKDNQDSVATQNMLTSISDNLNEKISTLDENQSNILSYIKNDLINNLSEDNNTLNQNLIDDITNKFSDQASLLTSIENKISNYTIVDDLYKKHISLTQNLLQYLTSKFNDQTSILTSIEDEINNPKFINDLSQKHITLNQDLIDYINTKFNDQIPILTSIKDEVSNNESCIKIQNTLDSLSNNLKSQSSILDSIKNKVNNNEAYSIAEDLLNKIVNTLTDQESSLTYIKDKVNSDEEFTNIKTILGSFSNNLENQSSILDCIKDKVNNNIPESLSEKLDTQNLKLDSYNDSFNDITKIFSDKLNSIDNKMDSIDNNLIDFKKDNTNNFDSYISPVSNDISELKNAISPLTENINMLKSNIDTLTNAINSKNNTIDENDKINSTNFNSINSQLSELSTNLKTLTETINSIANELLN
>NZ_CP016091.1|WP_022750076.1|4500753_4501728_-|glycerophosphoryl-diester-phosphodiesterase
MKILNIAHRGYSGKFDENTMIAFRKAIEYKADGIETDVQLSKDGIPVIIHDETLDRTTDGHGFVKDYTLKELKEFRTKSVPRVQALKGEAIEGLQLIKEINSSKLGEYTLDEVEYFKNNNGEEIPTLRDLLELFSASDLKILNLELKNSISEYDELEEKVISMIDEYNLRDRVIISTFNHMSLVKIRELEKQEIEYMANQVETLKDSNSANYKNTNTKLKNDKTKPKSKIILGALTDSTLANVPKYLNDIDVECYHPCFYSILNKSYMKEIKNAGIKVNPYTVNEIEYMKMVIEAGADSIITNEVEKLNDVIKSFPNIDKQLGI
>NZ_CP016091.1|WP_077395085.1|4501924_4503070_+|cell-wall-binding-protein
MNKNIKKLISFTIIFTAFSIFTPSTINILEQSAYAYSEYEINALSISSGYSIIPIYDSITYNKDYKIKNGDKIPSIIYSKISSDKASFKLNTLETNAVDIRAFSGNEKLNDIYGEITIPEGESKSIYIRLYNSKNASDNDYDSEYELIVERESSNSTDNDLDNESEDDTITLKDYDDIYLDNLILFDNNDNKIDFTFDKTNPISNINIDKSISCITVKAIPEEQVYNLLINDKHIKTSGNDKDKRLISLDEGKNIIKIRIVDSFNHKRREYFLVVTRGQDNSETYNNNNNNNANTNLENAQGNYIKTNGNWQYKKADGTIAVGWTFINNEWYYFDSTGAMKTGWLKDTSGKWYYLKESGAMAKNTVIDGYTIVSDGSAINK
>NZ_CP016091.1|WP_022750083.1|4503501_4504548_-|hypothetical-protein
MKYIYLKRIIASCIISSTLLVMAPLGASAAWIGSYNEGWYYTEGYTYATGWRYINGTWYFFDDTGLMKTGWISSNGLWYYADLSGAMQKGVIQIEGKIYLFTDSGAMETGSAMINTKLYNFNEKGVCTSGEAPMPSRAFDYYGVDVRPYVPSQIVNSSDTKMNNDLPSDDANTVKTYKIQFKDDDGTSLKTKNVEEDKKVTLYEPTKSGYDFVEWNTKKNGDGTSYQYDDQITVKKDLTLYAQWNESTNTDTNNTSSDQNIPVTSIKVVSVGSKTTITLNSTLQMTRTVLPSNATTQNVTWSVEDGTGSATISSTGRLTPSKLGTVIVKATATDGSNVYGEIQITIVD
>NZ_CP016091.1|WP_022750087.1|4504644_4507539_-|cell-wall-binding-protein
MKRKLISKIIALSIVGTVSATIYPTRAFAAWTKDNQNNYYYTQGNSKLTGWNKINGSTYYFDEDGIMKTGWIKIDSSWYYLDNSGVLKRGWIYYNNNWYYSDASGVMQTGIIKIVGSTYIFTSNGIMQTGHAIINGTFYTLDNSGAVVSNSTPSANKQFDEYGKCVLDSGNSTSNIDAPNESKYNEEIVDQSKSDEDPNEGRKFKVTFKDSINGKDIEDKTVKYGRSIKLDEQDKDGYKFVEWNTMSSGKGKSYDSGDNVKIRSDLTLYAIWKQETDTKSVTSISISGDSQVEVGKKIQLSADILPSDATNTKVKWSVTNNGGSATIDNDGILTGATTGKVTVTATAADGSGLSSSKDVNIVAQKTLVTSITIGGDSVAITQDGGTLDIRTLLSVLPENASDKEVSWSVSKVAENTGDAIGNATISDSGVLTALGNGTVKVIATAKDGSGITGSKFVHISNQTVKLTSMAVRGKDNLKVVNVGDSTHNYSLQMYADLVPTNADISSTEWSVKDSTTSGSTMTGKAMINSSGVLTGTSPGTVTVAAKVTTKSGDVITGSQEINVVQLVTSIDVIGRSVTDQTTSSSITTNGGTLQMEATATPTNANTKDVTWSVVENDAKGTTTDKATISKSGILTATKNGEVLVQATATDGSGVVGSKVITISNQLIKVSKLTIDGLDNVEIGSDTISSPITLKMTAVTTPQVVSDNSVEWSVKEMSSSGPVDTDKATINQNGLLTAKSPGKVVIIVKAKDGSNTIATKEVEIIRKVESLVVLGANSSKKVATNGQLQMNAFVLPSDAKDQTVKWLVVQATTDEINNNSSKLTLNPGLASIEESTGILTGIANGEVKVIAISNYDNSIKGQLLVDVVVPVTSIQVQSSSQVITAGEQLQMSADGLSDATDKVVTWSIQGISGDTGQVSINNNTGELTTTSNITQKTVVTVIATAHDGFGACGTATITINPKKTT
>NZ_CP016091.1|WP_077395086.1|4508108_4509737_-|choline-binding-protein-A
MNKRIRRIIAVVLAVSAFSTIEPTKYMNITGITKAYASSTVIDNFQVNKAATDNELNLYEDEDYEDTTNFKASTDTYYVKTSSSSINFTFDTNSNYVTKVFKDDSKTGTPFDSGEEINLDKGTNTLYVRTYKESKFDKNNVKTNVIEEYKIVVERKTNSTNDVQLSKISLDYGDISFSKSQTSYDVDVNSSVDQIEITAKPSKKSYTVKIAGDEVTEDDDYQETVDLRKGANEIEINVTDDDGNENTYTLNIYRGGKSNTTIDNSDIDTTQDKIYLKDLKLNNGDVELDYNKQVTKYNVNVDSSVNKLTIKAEPQDDNDTVKVNGGKVDSDYEKTVNLDDNSTKEIQVKVKNSDGEQRIYTLNVTRGTVSQNSTTNNTSTDAANNTSTNTTSNTTTNDTNTNNNSTNQTTSNNTVVSKWVKDTVSDKWKYYDDKGDQVKGKWFYYINDNHWYYLDDQGNMKTGWLSKDYKWYYLDENGIMQIGWVNLSGTWYYLNADGSMRTGWLQEGTKKYYLNSNGAMQTGTATINGKSYTFDTAGAMSN
>NZ_CP016091.1|WP_077395087.1|4510117_4512235_-|hypothetical-protein
MIRRINKIVALVLVSTGISSAIPNNIFSQTANAAESNQSVINIDTQKNTVAMESQDQALKTVVKAMIPSKTGYSTSVISEFKECGSVAYTLDDATALSIGNTLKSNISQMIAGVNQVKNKGTEMKVKGQATSNNDMIQSGTDLESSATTVLEELNQANSMSDSQLVQMIESQAKNVTVYQYRELKSDDGLTASSPTTIQAEGFVVGGILGIALDPQDTYNAETRIATYNSSTLIENLTLNNNGTYGKSIDLNSSTNKVVCDGLHINVIDSQNNALYVINNPAYNMFKQSKSLYTDEDKKLNILNFPSEVNNLKGYATDISFNTGTQSIQTTILGLLLNLKNSSTTDKKTYKYVAPVDSPEAEMLNVVVSKLGLNDLAKQLVENQMKGSTFVMIPDVKTDITNKVNNAIDKINNTVEDITDAMKDLSDAMEDLNDSLNDKNNDVNKAWDKVFDRFDNDPGWAKKDGYWYYYDKDGISSKGAQTIDGKTYYFNRIDGAMETGWQIVNNKKCYFDKDKGYELFTQWVQDGDDWYFVDSSGAVKKSDWITSGGNYYYVKADGKMTKDWLKVDDNWYFFNSDGSMASSTWKWSDNKWYYLKENGAAANDWLQIGDNWYCFKDSSGELQTGWFRNNGNWYCAGDNGVMKTGWAYSSDGWCYLDDSTGKMKKNEWANINGKWYYFNINGTMVTGSRYINGTKYTFNSDGTME
>NZ_CP016091.1|WP_022750099.1|4512461_4512869_-|DUF86-domain-containing-protein
MGKDVILNKIETIERCVNRINEVYDNNPENLNDYTKQDSIILNIQRACEASIDLAMHIVSEKKLGVPQNSRDSFEALNHNNIIDNELNKKMKSMVGFRNIAVHDYRAINLKVVQIIIESHLKDFEEYIYQINKLL

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Crispr_ID: NZ_CP016091_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016091_9

4576357-4576452

Orphan

Consensus_repeat	Method
TAGATCCTTCTTCAGGTGCTATGAAAACAGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016091_9

>merge|NZ_CP016091|9|4576357-4576452|CRISPRCasFinder
TAGATCCTTCTTCAGGTGCTATGAAAACAGGATGGGCAAACAATAATGGAACTTGGTATTACCTAGACCCTTCTTCAGGTGCTATGAAAACAGGAT

>NZ_CP016091|9|7|4576357-4576452|CRISPRCasFinder
TAGATCCTTCTTCAGGTGCTATGAAAACAGGAT	GGGCAAACAATAATGGAACTTGGTATTACC
TAGACCCTTCTTCAGGTGCTATGAAAACAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016091.1\|WP_077395104.1\|4585949_4587608_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277318
NZ_CP016091.1\|WP_022750235.1\|4569698_4570799_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340847
NZ_CP016091.1\|WP_077395098.1\|4573046_4573784_-\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|224833
NZ_CP016091.1\|WP_077395103.1\|4582103_4583195_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376607
NZ_CP016091.1\|WP_022750218.1\|4563616_4564198_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP016091.1\|WP_022750234.1\|4568214_4569459_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372600
NZ_CP016091.1\|WP_077395101.1\|4578474_4579218_-\|CpsD/CapB-family-tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP016091.1\|WP_022750280.1\|4583398_4584007_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_077395100.1\|4577689_4578457_-\|capsular-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226870
NZ_CP016091.1\|WP_022750239.1\|4570889_4571771_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NZ_CP016091.1\|WP_140395207.1\|4574931_4575573_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	unknown	unknown	gnl\|CDD\|376775
NZ_CP016091.1\|WP_077395097.1\|4571763_4573002_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NZ_CP016091.1\|WP_022750230.1\|4566627_4568064_-\|flippase	unknown	unknown	gnl\|CDD\|240533
NZ_CP016091.1\|WP_022750226.1\|4565214_4566429_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP016091.1\|WP_022750283.1\|4584616_4585804_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NZ_CP016091.1\|WP_022750290.1\|4588011_4589727_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP016091.1\|WP_022750270.1\|4579230_4579911_-\|capsular-polysaccharide-biosynthesis-protein-YwqC	unknown	unknown	gnl\|CDD\|226453
NZ_CP016091.1\|WP_077395102.1\|4580524_4581499_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP016091.1\|WP_022750291.1\|4590064_4590322_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016091.1\|WP_022750222.1\|4564208_4565114_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274

Protein	Function_ID	Function_description	E-value
NZ_CP016091.1\|WP_077395104.1\|4585949_4587608_-\|metallophosphoesterase-family-protein	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.89686e-08
NZ_CP016091.1\|WP_022750235.1\|4569698_4570799_-\|glycosyltransferase	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	1.19588e-28
NZ_CP016091.1\|WP_077395098.1\|4573046_4573784_-\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|224833	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane].	2.43539e-93
NZ_CP016091.1\|WP_077395103.1\|4582103_4583195_+\|acyltransferase-family-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	5.63264e-08
NZ_CP016091.1\|WP_022750218.1\|4563616_4564198_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	1.06818e-116
NZ_CP016091.1\|WP_022750234.1\|4568214_4569459_-\|hypothetical-protein	gnl\|CDD\|372600	pfam13425, O-antigen_lig, O-antigen ligase like membrane protein.	5.44312e-14
NZ_CP016091.1\|WP_077395101.1\|4578474_4579218_-\|CpsD/CapB-family-tyrosine-protein-kinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	9.52445e-84
NZ_CP016091.1\|WP_077395100.1\|4577689_4578457_-\|capsular-biosynthesis-protein	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.35487e-81
NZ_CP016091.1\|WP_022750239.1\|4570889_4571771_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	9.66456e-64
NZ_CP016091.1\|WP_140395207.1\|4574931_4575573_-\|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	2.39708e-97
NZ_CP016091.1\|WP_077395097.1\|4571763_4573002_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	3.98009e-35
NZ_CP016091.1\|WP_022750230.1\|4566627_4568064_-\|flippase	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.39139e-58
NZ_CP016091.1\|WP_022750226.1\|4565214_4566429_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	9.90238e-30
NZ_CP016091.1\|WP_022750283.1\|4584616_4585804_-\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	3.42785e-78
NZ_CP016091.1\|WP_022750290.1\|4588011_4589727_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.74162e-51
NZ_CP016091.1\|WP_022750270.1\|4579230_4579911_-\|capsular-polysaccharide-biosynthesis-protein-YwqC	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	5.58071e-56
NZ_CP016091.1\|WP_077395102.1\|4580524_4581499_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.25634e-14
NZ_CP016091.1\|WP_022750222.1\|4564208_4565114_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	7.50941e-176

>NZ_CP016091.1|WP_140395207.1|4574931_4575573_-|exopolysaccharide-biosynthesis-polyprenyl-glycosylphosphotransferase
MEETLFKEQIESRKLYCFIKRVMDILGSAMGLVILSPILLVIGITVKIESKGPLVFAQERVGLNGKRFKMYKFRSMVANAEELKSKLHDQNEMNGPMFKMKEDPRVTKVGKFIRRTSLDELPQLVNVLKGEMSLVGPRPSLPKEVEQFEDWMMTRFSVKPGLTCYWQVSGRNDIEFEDWMKLDAKYVSERSTLVDIKLILKTFGVLLGDEHAS
>NZ_CP016091.1|WP_077395098.1|4573046_4573784_-|WecB/TagA/CpsF-family-glycosyltransferase
MSRIKFLNTEIDNVTMLEAINKIDEFVSKRKPSYVVTPNVDHIVKLEVDEEFKEVYRKADLILTDGMPLIWISNFKSMPIKEKISGSDFFPEVCKLASEKGYKIFLLGAAEGVAAKAAENLKNKFEGLNIVGTYSPSYGFEDKQEEIEKIIDIITKSKPDILAVGLGAPKQEKFIHKFRDRLNIPVSLAIGASIDFEAGNIQRAPIFMQKCGLEWFYRLCKEPKRMFKRYLVDDLKIFKIALKYK
>NZ_CP016091.1|WP_077395097.1|4571763_4573002_-|glycosyltransferase
MKILFITNLLPYPLDNGGKIKSYNTLEMLSEENDVDIFSFYESRKELDSLKYMKSKFNNVHIIEKPLTTSKNIKKMIFIAFRSLFNKLPFVLLKFKDNNMSQLLKKEISKNKYDLVYIDHLQLGVYWDILKMCNCPIYLDEHNCESQILKRKIKSGENILKNCFIRLEYKKLKNFEDKIVKKCDKVIVLSEEDKKCLMNGVDVNKNKFTVIPIPIQADFMKTIGSRINNKKTLNIMFLGTLTWFPNSQGIEWFVDKVIPKLEQTNSDYKLFIVGKDPSESLMNKCKQNNKIIVTGYVDDVNEYIEKCDIMIVPIFVGSGMRVKILEGLGKRIPIISTQIGAEGIDVENEKDILLAENEQEFINSIVKLTDNELYSSIQKSGRKLFDSKYSIEAVITNYKRLVLNDKELKKNE
>NZ_CP016091.1|WP_022750239.1|4570889_4571771_-|glycosyltransferase-family-2-protein
MNNTPLVFIILVNYKGVDHTIECIKSLNEITYSNYKIIVVDNDSQDNSVNKLKEYKKNFILIENKINTGFAGGNNLGINYAIKNNADYVLLLNNDTTVEPNFLDELINKTSPEIGINIGKILFYYDKSMLWYAGGRINALKGCTDVNGFEKDNGQYDEEKYVTFASGCCMLISKEVLNKVGMLMEEYFLYFEDTDYCAKVLNNGYKILYCPKSVIYHKESVSTVKESFNFLYYITRNRLYFIKDNIKGINKILSFIYSFIFIFTKAIIKNQDKKPILCAYKDFFRKKKGKLII
>NZ_CP016091.1|WP_022750235.1|4569698_4570799_-|glycosyltransferase
MRFVTMFPETKNIHLTKDVGMIPFIMYKKFGYDSTIVCYKNGKYDYLRDEVKGLKINFIKKYTGKSIIDGAIYLLGNAKKIDVLHLFHLGKREIVWINLYKILNKNGKVYLKFDADYKIKKAINPSMNTLKSKIKNITLRKCKLTSVETLNIYKFLREEWKINVEHIPNGFYDYGKKEIVQYTNKDNIILTVGRIGSYQKATEILLEGFRLASSGLNNWRLRIVGPIEESFKDYMNKFITKNPNLKEKIEFTGAIYNRKKLEEEYRKAKIFCLTSRYEGFPLVFLEAIKHGCYIISSDFDAAYDITNNEKYGDVFTIDDVNELSICLTKDCNQEQKLRENCYKIQEYNYEEFYWPIICEKIHHLIN
>NZ_CP016091.1|WP_022750234.1|4568214_4569459_-|hypothetical-protein
MDKKLLKYIIIFNPFLDIIYSVISKTGVTLPINQVVRILIMAYLFFRFTNNKDKIFVILIAILFGIGEVTYIYTNGTSVFTDIQYITKILYFIIVIYAFRSILSKHILTIDEILNYIILSSCIIVASIILSVFGIGFHTYFDGRFGYKGFFTVQNAVTATLIVTTPLNIFLYEKFKYKKYLVSFILSAISLCLIGTKAGIVGGVGSIVVVYLIFLFKMKFTYIKIILGLFSIATIISFSYFKQELFINVYNVMVEKIYSWGENNVYSYIVSNRNLQVSYVEQYISTYYKQNPLLFFGIGFTNCNNILQLHSFDIIEMDFNGILYYSGIWIFIVIFSIITKKILVLLKYFFESKLSIQYYTLLLSIIGGTIHSFWGGHVIYEAMTSLYYGIALIIPAILYQDIKIERTACCKPID
>NZ_CP016091.1|WP_022750230.1|4566627_4568064_-|flippase
MRNIKLNKVVRNFISLTFANVLGQVLMFISVVYTAKYFGPDNFGIINFSNTIITYFTALASFGLQSLCVLEIAKSKKNNDYKINTILSLKLILATIVYILVIILAIFINKSIVYKLNILFYGLSIFPNAIYVDWIFNANEEMQYNSRSIIIKNLVYSVVVIIALRFFNITNLYYLAVFMFLATLISSLYLLKIAKRHYNMNFKFIINFKEYKRLILNSWPFFFSGIFATINSTIATLMLGFMRTDYEIGIYNSVYKIVNVFIMIAGILFTPVYPSLIRYYNEKQIDKLSTLVNNLRKIVYIISIPILCVAFILNKEIILTLYGDKYKDAYIVLTILFIYVALLYIREIYGYELSAWNLQKKYMKVVLLSSIYNIISNFAFIKYYGIEGAAVNTLISEIINVVLMFKISRNVVKIKYENKFIAKILVSSLGMSVIILICKIVTYNAIILSIIGGGIYFCLLFITNTISISEIKENVLTK
>NZ_CP016091.1|WP_022750226.1|4565214_4566429_-|polysaccharide-pyruvyl-transferase-family-protein
MKKIILAGASLNSGNRGVNALTRGQIMLICDKYGYDSEIEILSYTVKDEIINKIIYNNKEIIVKETPCSKNELIVAYIESIGFGENYILKKIKLADMVFDISEGDSFSDIYGTKRFIQHSIIKLIAINVKTKIVIMPQTLGPFNRNWVKIIARKILNKADKVFVRDEISKKVATEELQIQRDIKYIPDLAFYMKCDEKTFIDKFISDKKKIKVGINVSALLYNGGYTKNNMFNLKANYKKLVTSLIEKFANMNDVEVILIPHVMTKNFEVEDDFSVCKKIANDISKKIRTDIKTIDKYYREDEIKTIISGCDFFIGSRMHACIAAISTKVPTAPIAYSRKFIGIWEKIELGDCVLDPKNESENEIIEKIIKIYNNRSRIKEVLELQIPLLKSQIENIPYIIEQK
>NZ_CP016091.1|WP_022750222.1|4564208_4565114_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPVTKAMSKQMVPIYDKPMIYYPMSVLMLAGIKDILIISTPRDIVNFKELFKDGQELGLNIEYAIQENPNGLAEAFIIGEKFIGDDNVAMVLGDNIFYGQSFTEHLRKAASLENGAYVFGYYVQNPKAFGVVEFDSNNKVISLEEKPENPKSKYAVPGLYFYDNSVVEKAKSLRPSPRGELEITDLNKSYMQEGSLKVQLLGRGMAWLDTGTHASMLQASNFVEAVQNTQGTYIACLEEIAYRKGWITSKQVIELAKPLMKTGYGKYLMDIVDEVEKSKKEVAVTVK
>NZ_CP016091.1|WP_022750218.1|4563616_4564198_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MGNFNFNKTKIDGVYIIEPKVFGDNRGYFMETYNKEHFQEAGLNMTFVQDNESKSSKGVLRGLHFQRKHSQGKLVRVTKGEVFDVAVDLRTGSPTYGEWEGVVLNDENKKQFYIPEGFAHGFLVLSDEAVFNYKCTDLYAPEYDGGVMWNDPDINIKWPVDGIENILLSEKDKVHPSLKQLDLSEYEDFIYKK
>NZ_CP016091.1|WP_077395100.1|4577689_4578457_-|capsular-biosynthesis-protein
MIDIHSHIIPGIDDGSKNMEMTLEMLRAAEKSGTKKIVATPHYLMEYGEAKINEVKDHVEKINSIVNDEGINIEVYAGQEVYFTHNIINDYLEGNIGTINDSRYMLIEFSMRNQEQNLFDTLYELQVRNIVPIIAHPERYKYIINKPSIINDFINEGYLFQMNAGSLEGVFGDSVRKTAEILVTNGIYNFIGSDAHNTTTRSVGISEGVDLANAKNKINGELIGESSRRLILNEDIEFCGQKIKEKKSIFSFFGR
>NZ_CP016091.1|WP_077395101.1|4578474_4579218_-|CpsD/CapB-family-tyrosine-protein-kinase
MFSAKKLENAVANQQYRGFVVEKKPKSIAAEAYRTLRTNIQYSSFDKEIRSIVVTSAEAAEGKSTVSGNLAISFAQNEKKVIIVDCDLRKPSVHKNFKISNLVGLSEVLIGKAKLEEAVQSRNEYLDMLPSGKIPPNPSEMLSSKAMVNLIEKLKETYDIVILDSAPLLAVTDAQILSKDVDGTILVTRAGRTKRESVIEAKNLLTKVGANIIGSVLHAVENTRGKYYYYYGSNEDGDETKTKKKHK
>NZ_CP016091.1|WP_022750270.1|4579230_4579911_-|capsular-polysaccharide-biosynthesis-protein-YwqC
MNEEIVRLEDIVDILNKRWKMILSITVITTLIAGILSFFIIAPKYEASTKLFIGKENSQTQDKNYNNSDIQMYQQLLKTYAGVITTNDLVENAINNADLNVTSQEVLKNLTVTPSANTQILEIKYISKDKTLSRDLVDSITNQFIKESTELIPNGNVKVIESVKMPENPVSPNKKLNIAIGFLLGLMVSIGLAFLLEFVDNTFKTKEQVEQILGLPVVGAIPDDFN
>NZ_CP016091.1|WP_077395102.1|4580524_4581499_-|hypothetical-protein
MNKKLKQLIAIALTVSSVAAFGPTNVFSLITPVSARTSVLDPDELKTLNITTSNGSNLKICSDSYDGKEVDISDIDPDSNKEFYAVLPTGNTKINVSADIKGKNYIAKIFTSKNENAKAYDPARPYDEGNDIYLTDDVTNLYIRIYRSQDDYDEVKDTDVTDCSNTYIVHIKKEEAFSKKYPANSDNDSQTNHEYKQSKDIYNNSNNIEKIIVPGSSQIEIKSSQWVKDALGWQYNGSDGTPVKNAWLLDNQTGKYYYVQTDGYMTTGWKYIDGNWYCFDNSGVMQTGWIQSSDGNWYYLYSSGKMAKDTTIDGYTLSYNGQMM
>NZ_CP016091.1|WP_077395103.1|4582103_4583195_+|acyltransferase-family-protein
MENLKFTRDDTSIAKGIAIICMFIHHLFTFPNRIKGSSEFISLFQFNGNNIEYWFGQYGRICVAMFLFFSGFGIYKQFAKNNAHVSSNVFKRLKNLYVNYWTVFIIFIPISFFTGYREFNLAEFFDNFVGYRSTYDGEWWFFELYVLVIATFPVTVKLIKNSSVTSFFKIMVLAVLSRTVYVSLKDVPLFNTFAGTIFYSELNLLLTWLPCFLMGITFAKFDLFPKISQKFKDNKLDNIFVYLLICLVLMYVRFRNDDVIDFDYLIAPLYILCSVNIVKILKLNKLFVYLGKHSSNMWLVHSFFCYQYFQWWVYLPKISIFVLLWLIIITIATSIAIEFIKKQVTKLCSGEFKLSYMNRALRD
>NZ_CP016091.1|WP_022750280.1|4583398_4584007_-|hypothetical-protein
MKKIRTRVITLCLSLGILAGTIGMPTAAFAATTDATYKVSNGITTDSPDSIKGTDGTSKDSIYGASLAASGGSSFSGSANFNANVNIDVLGIANRIISAINARNFNGQNAAFCKGLMESAFYAAHGQYNVVVMDLSQNYKHNISGVKYFATYQYGGTTFGVWVFSRQQPKGSYFENDGRRGWDHWACQGWQTQVNNVMWYNR
>NZ_CP016091.1|WP_022750283.1|4584616_4585804_-|YibE/F-family-protein
MKLKLDRISAIKICSKIIIPIAVLVAYIVIAVNFSSHTPIYNPYSSGAGGEMHYEKGKVISIDEQVINPSGFSGLYIGRQMVNVLIESGQYKGQTFQVNNALNYDTNFILHNGQEIVVSVNTSTGDKSQINVYMFSPYRVVPLLVLIGIFIGAICLVGGWRGFHSVLGIIFTLTTVIFIFVPLLFYGISAVAATIFLVVITSCVTLFLVGGFDRKTLSAVLGTVAGVIVSVIIMLVFSKILGISGYTSSDTDALLNIAGQSKLQVKDLLFTGVIIASLGAVMDIAISIATSINELHKQKQNACFNELFRSGMNIGRDMMGTMSNTLILAFLGESIFSFILMYSYQVQFKQLFNSNGITIDIVNAVCGSLAVIFTVPIVSAIAAKLLQGKQSSDFI
>NZ_CP016091.1|WP_077395104.1|4585949_4587608_-|metallophosphoesterase-family-protein
MKISKKAKFIIPIAVGTIIATTSCLHFVENVNAEVMDSSGIEGFSLPKVTGGYNINANVGSDPKELDFAWFTQSSGKTQIKIARTSDMNGTQFPNSADIHDATQSTVKVTQSIKQDCTVLPYTNGVGDPSNYRDNVFNGKSVSDTPTGEYSNKVTVKELTPNTKYSYSVSDGQGNWSPVYSISTLSTDKVSFAAFGDPQIGAFDNSKGTAKSSATGGHKNLNDDKTAWQNMLKLVNQNKDLNFLFTMGDQVNDYNYLIQPSNSSDGQWYQYRDFFNPDSAVNYIQSMPLAEFCGNHDHQMGEYYGYHYNQPNISKLGSTKYGNDGDYWFTAGPVLFLVLDANNYGTADHDQFIAQAIKANPNAKWKVATWHQSAYSEANHNTKNEIEDPALTIRNTWTKMMDKYNIDVVLQGHDHYYTRTAQMLNGNVVEPNTGTPETLKNIGNESAPGTTNPNATYARKEYPNSVTNPKGTVYFTLDTGTGSKYYDFNTGSNDTVGGSADHSFSVVGWQGYVPSYSYVSFTDNTFTIKTYATTDFKVENQSLIDSYTITKN
>NZ_CP016091.1|WP_022750290.1|4588011_4589727_-|methyl-accepting-chemotaxis-protein
MKRSCKRLRNVKITRNIILIWIISLMSTVIIGVEGYSNTNKMYNITNNINSNVIPKLKDWGDVNGYMGVLRNTLTKIIDRPFDPKNEKTMLELNNNITTIMQRQVISSQGDEKEAELVKTAKEAYEHYYSFIPNIIEQRKQGLVPDTKITNEDMGVYGNALAKSITDLVDYQKNTANENSEQSKNVYHDSIIGFGIVFVLSILILTIISLIIIVAIRDLIKEFTNDLQILSEGDFTIEIDDSLTNEFGIMNNALKKTINSISHILKNIETESTSIHSQSSSLSMLAEQMNTSTQDISSAIDGVAKGSSSQASELVTMNELLNNFGVSLDEVGAIINKVNAHTKEVNVKAESSNNELAHIITSINNISNSVNDVGQKISDLTSSVKEINEITNLLNDIAEQTNLLALNAAIEAARAGESGKGFAIVAEEIGKLAEQSKHSSNGINELVKTIQSETDMVTMTANDANSELSKQVSVIDNSIKSFKDIIISIGNILPEMDDINSSISQINKKKENIMDVAENIAAVAEENCASAEEISATTQNMISSADEVEKSSQVLNNKTNSMIEQVNKFSL
>NZ_CP016091.1|WP_022750291.1|4590064_4590322_-|hypothetical-protein
MNCKTVNKSKFKLMNYFTNKNNDYNKASKNITSIYKYIIGLWQAIFHRIDNDPNNYKKNYNYCDTSYNVTDRIELRLIASKKTFL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016091_3	3.6\|2338484\|36\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338484-2338519	36	NZ_CP016091.1	2948576-2948611	1	0.972
NZ_CP016091_7	7.3\|4380774\|20\|NZ_CP016091\|PILER-CR	4380774-4380793	20	NZ_CP016091.1	4380567-4380586	1	0.95
NZ_CP016091_7	7.3\|4380774\|20\|NZ_CP016091\|PILER-CR	4380774-4380793	20	NZ_CP016091.1	4380912-4380931	1	0.95
NZ_CP016091_7	7.4\|4380843\|20\|NZ_CP016091\|PILER-CR	4380843-4380862	20	NZ_CP016091.1	4380567-4380586	2	0.9
NZ_CP016091_7	7.4\|4380843\|20\|NZ_CP016091\|PILER-CR	4380843-4380862	20	NZ_CP016091.1	4380912-4380931	2	0.9

1. spacer 3.6|2338484|36|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to position: 2948576-2948611, mismatch: 1, identity: 0.972

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattagaatcagatatactactagttg	Protospacer
******************.*****************

2. spacer 7.3|4380774|20|NZ_CP016091|PILER-CR matches to position: 4380567-4380586, mismatch: 1, identity: 0.95

actacaaccagaaaatgcac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** *********

3. spacer 7.3|4380774|20|NZ_CP016091|PILER-CR matches to position: 4380912-4380931, mismatch: 1, identity: 0.95

actacaaccagaaaatgcac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** *********

4. spacer 7.4|4380843|20|NZ_CP016091|PILER-CR matches to position: 4380567-4380586, mismatch: 2, identity: 0.9

actacaaccagaaaatgtac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** ******.**

5. spacer 7.4|4380843|20|NZ_CP016091|PILER-CR matches to position: 4380912-4380931, mismatch: 2, identity: 0.9

actacaaccagaaaatgtac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** ******.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	NZ_CP019876	Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence	55275-55309	8	0.771
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	111993-112027	9	0.743
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	NZ_CP032530	Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence	40546-40580	9	0.743
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	CP041518	Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence	78660-78694	9	0.743
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	NZ_CP018876	Bacillus megaterium strain JX285 plasmid 3, complete sequence	25302-25336	9	0.743
NZ_CP016091_3	3.6\|2338484\|36\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338484-2338519	36	MT774386	CrAssphage cr110_1, complete genome	72552-72587	9	0.75
NZ_CP016091_3	3.6\|2338484\|36\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338484-2338519	36	MT774383	CrAssphage cr11_1, complete genome	89075-89110	9	0.75
NZ_CP016091_4	4.4\|2367150\|33\|NZ_CP016091\|CRISPRCasFinder	2367150-2367182	33	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	19956-19988	9	0.727
NZ_CP016091_5	5.21\|2726412\|37\|NZ_CP016091\|CRISPRCasFinder,CRT,PILER-CR	2726412-2726448	37	NZ_CP022984	Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence	32374-32410	9	0.757
NZ_CP016091_9	9.1\|4576390\|30\|NZ_CP016091\|CRISPRCasFinder	4576390-4576419	30	NC_010105	Enterobacteria phage JS98, complete genome	97411-97440	9	0.7
NZ_CP016091_9	9.1\|4576390\|30\|NZ_CP016091\|CRISPRCasFinder	4576390-4576419	30	MH791409	UNVERIFIED: Escherichia phage EcWhh-1, complete genome	159174-159203	9	0.7
NZ_CP016091_9	9.1\|4576390\|30\|NZ_CP016091\|CRISPRCasFinder	4576390-4576419	30	NC_012741	Enterobacteria phage JS10, complete genome	96487-96516	9	0.7
NZ_CP016091_9	9.1\|4576390\|30\|NZ_CP016091\|CRISPRCasFinder	4576390-4576419	30	MK310184	Phage NC-G, complete genome	40245-40274	9	0.7
NZ_CP016091_9	9.1\|4576390\|30\|NZ_CP016091\|CRISPRCasFinder	4576390-4576419	30	EU863409	Enterobacteria phage JS10, complete sequence	96487-96516	9	0.7
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	KF751797	Campylobacter phage CJIE4-5, complete genome	14225-14259	10	0.714
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	KF751794	Campylobacter phage CJIE4-2, complete genome	13978-14012	10	0.714
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	KF751795	Campylobacter phage CJIE4-3, complete genome	12306-12340	10	0.714
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	KF751796	Campylobacter phage CJIE4-4, complete genome	12344-12378	10	0.714
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	KF751793	Campylobacter phage CJIE4-1, complete genome	15252-15286	10	0.714
NZ_CP016091_5	5.21\|2726412\|37\|NZ_CP016091\|CRISPRCasFinder,CRT,PILER-CR	2726412-2726448	37	MN855735	Bacteriophage sp. isolate 111, complete genome	23846-23882	10	0.73
NZ_CP016091_5	5.21\|2726412\|37\|NZ_CP016091\|CRISPRCasFinder,CRT,PILER-CR	2726412-2726448	37	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	141225-141261	10	0.73
NZ_CP016091_1	1.1\|160142\|45\|NZ_CP016091\|CRISPRCasFinder	160142-160186	45	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	258919-258963	11	0.756
NZ_CP016091_1	1.1\|160142\|45\|NZ_CP016091\|CRISPRCasFinder	160142-160186	45	NC_029046	Sinorhizobium phage phiLM21, complete genome	21193-21237	11	0.756
NZ_CP016091_3	3.3\|2338287\|35\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338287-2338321	35	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	30024-30058	12	0.657
NZ_CP016091_1	1.1\|160142\|45\|NZ_CP016091\|CRISPRCasFinder	160142-160186	45	NC_047861	Bordetella phage vB_BbrM_PHB04, complete genome	45162-45206	13	0.711

1. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019876 (Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence) position: , mismatch: 8, identity: 0.771

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
gaacctttttctttattatttttagttcgttggct	Protospacer
*** ********** ********** *.    ***

2. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

3. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

4. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

5. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

6. spacer 3.6|2338484|36|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.75

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattaaaattagatataagaaagcccg	Protospacer
**************.***********  *  . ..*

7. spacer 3.6|2338484|36|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to MT774383 (CrAssphage cr11_1, complete genome) position: , mismatch: 9, identity: 0.75

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattaaaattagatataagaaagcccg	Protospacer
**************.***********  *  . ..*

8. spacer 4.4|2367150|33|NZ_CP016091|CRISPRCasFinder matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gagaat-----atgcatttgttaagtgcgttaatttaa	CRISPR spacer
-----tttccgatggatttgttaagttcgttaattaat	Protospacer
     *     *** *********** ******** *

9. spacer 5.21|2726412|37|NZ_CP016091|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022984 (Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence) position: , mismatch: 9, identity: 0.757

tcgtgttata----tttttcatttagtttccccctttatag	CRISPR spacer
----ataataaaactttttcatttaatttcccccttaatat	Protospacer
    .* ***    ***********.********** ***

10. spacer 9.1|4576390|30|NZ_CP016091|CRISPRCasFinder matches to NC_010105 (Enterobacteria phage JS98, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

11. spacer 9.1|4576390|30|NZ_CP016091|CRISPRCasFinder matches to MH791409 (UNVERIFIED: Escherichia phage EcWhh-1, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

12. spacer 9.1|4576390|30|NZ_CP016091|CRISPRCasFinder matches to NC_012741 (Enterobacteria phage JS10, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

13. spacer 9.1|4576390|30|NZ_CP016091|CRISPRCasFinder matches to MK310184 (Phage NC-G, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

14. spacer 9.1|4576390|30|NZ_CP016091|CRISPRCasFinder matches to EU863409 (Enterobacteria phage JS10, complete sequence) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

15. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

16. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

17. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

18. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

19. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

20. spacer 5.21|2726412|37|NZ_CP016091|CRISPRCasFinder,CRT,PILER-CR matches to MN855735 (Bacteriophage sp. isolate 111, complete genome) position: , mismatch: 10, identity: 0.73

tcgtgttatatttttcatttagtttccccctttatag	CRISPR spacer
taaacccatattttccatttagtttcctcctttattt	Protospacer
* .  ..*******.************.*******

21. spacer 5.21|2726412|37|NZ_CP016091|CRISPRCasFinder,CRT,PILER-CR matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.73

tcgtgttatatttttcatttagtttccccctttatag	CRISPR spacer
atttgttatattttccatttcgtttcccccaacattc	Protospacer
 . ***********.***** *********  .**

22. spacer 1.1|160142|45|NZ_CP016091|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 11, identity: 0.756

ggtcgcaggttcaagtcctgtctccgcaaccat-tatatataaaat	CRISPR spacer
ggtcgcaggttcaaatcctgcctccgcaaccacgcacagccggaa-	Protospacer
**************.*****.***********. .*.*  ...**

23. spacer 1.1|160142|45|NZ_CP016091|CRISPRCasFinder matches to NC_029046 (Sinorhizobium phage phiLM21, complete genome) position: , mismatch: 11, identity: 0.756

ggtcgcaggttcaagtcctgtctccgcaaccattatatataaaat---	CRISPR spacer
ggtcgcaggttcgaatcctgtctccgcaaccagt---tacagcgccag	Protospacer
************.*.***************** *   **.*. ..

24. spacer 3.3|2338287|35|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.657

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tcttctttttcttttttattttaatatttcttttc	Protospacer
    ****************** * ****  . ..

25. spacer 1.1|160142|45|NZ_CP016091|CRISPRCasFinder matches to NC_047861 (Bordetella phage vB_BbrM_PHB04, complete genome) position: , mismatch: 13, identity: 0.711

ggtcgcaggttcaagtcctgtctccgcaaccattatatataaaat----------	CRISPR spacer
ggtcgcaggttcgagtcctgtcaccgcaacc----------agattcatcgctct	Protospacer
************.********* ********          *.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

441210 : 514677

Paenibacillus_phage(22.22%)

coat,tRNA,transposase,protease,integrase

attL 439487:439546|attR 487558:487639

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
439487:439546	attL	NA	NA	NA	NA
WP_077394020.1\|441210_442410_-\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	1.2e-21	26.0
WP_077394021.1\|442681_443170_-	hypothetical protein	A0A0A7RVV2	Clostridium_phage	9.6e-31	49.0
WP_022743733.1\|443265_443619_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_022743734.1\|443839_444031_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_077394022.1\|444048_444243_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_077395160.1\|444295_445453_+	DnaD domain protein	Q7Y4K5	Streptococcus_phage	2.9e-33	56.9
WP_077395159.1\|445370_446129_+	AAA family ATPase	Q0H276	Geobacillus_phage	1.1e-33	39.3
WP_077394023.1\|446272_446515_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	3.2e-11	45.9
WP_077394024.1\|447382_447601_-	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_077394025.1\|447642_447867_-	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_077394026.1\|448554_449628_+	galactose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_140395223.1\|449966_451109_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	5.3e-72	43.6
WP_077394027.1\|451532_452666_+	DUF2156 domain-containing protein	NA	NA	NA	NA
WP_077394028.1\|452632_453304_+	hypothetical protein	NA	NA	NA	NA
WP_077394029.1\|453742_454684_+	muramidase	NA	NA	NA	NA
WP_077394030.1\|455302_456127_-	TerC/Alx family metal homeostasis membrane protein	A0A291LBC5	Escherichia_phage	6.6e-32	37.3
WP_077394031.1\|456796_457651_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_077394032.1\|458787_459579_+	hypothetical protein	NA	NA	NA	NA
WP_077394033.1\|460280_460475_-	hypothetical protein	NA	NA	NA	NA
WP_140395224.1\|460511_460694_-	hypothetical protein	NA	NA	NA	NA
WP_077395161.1\|461142_461532_+	hypothetical protein	NA	NA	NA	NA
WP_140395225.1\|462936_466083_+	hypothetical protein	NA	NA	NA	NA
WP_077394035.1\|466164_466353_-	YvrJ family protein	NA	NA	NA	NA
WP_077394036.1\|466450_466981_-	hypothetical protein	NA	NA	NA	NA
WP_077394037.1\|467277_467520_+	hypothetical protein	NA	NA	NA	NA
WP_077394038.1\|467611_468199_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_077394039.1\|468352_469252_+	N-acetylmuramoyl-L-alanine amidase	A0A142F1B8	Bacillus_phage	2.5e-08	30.8
WP_077394040.1\|469333_469693_-	hypothetical protein	NA	NA	NA	NA
WP_077394041.1\|470104_471259_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	2.3e-30	30.3
WP_077394042.1\|471275_472889_-	AlwI family type II restriction endonuclease	NA	NA	NA	NA
WP_077394043.1\|472963_473131_+	hypothetical protein	NA	NA	NA	NA
WP_077394044.1\|473848_474367_-	helix-turn-helix transcriptional regulator	Q8SDX2	Staphylococcus_phage	3.3e-05	41.1
WP_077394045.1\|474779_476495_+	AAA family ATPase	NA	NA	NA	NA
WP_077394046.1\|477240_477885_+	hypothetical protein	V5US55	Enterococcus_phage	4.8e-06	28.9
WP_140395226.1\|477906_478434_+	hypothetical protein	NA	NA	NA	NA
WP_077394048.1\|478634_479108_+	hypothetical protein	NA	NA	NA	NA
WP_077394049.1\|479070_480411_+	hypothetical protein	NA	NA	NA	NA
WP_077394050.1\|481175_481706_+	hypothetical protein	NA	NA	NA	NA
WP_077395162.1\|482029_482446_+	hypothetical protein	NA	NA	NA	NA
WP_077394051.1\|482613_483294_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.0e-54	50.0
WP_155762439.1\|483266_483932_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.1e-43	62.9
WP_077394052.1\|484458_485997_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.0e-110	47.4
WP_077394053.1\|486124_486304_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.3e-13	61.0
WP_077395163.1\|488183_490235_+	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	1.5e-80	33.4
487558:487639	attR	NA	NA	NA	NA
WP_022743776.1\|495724_496672_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_022743777.1\|497025_498405_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_022743778.1\|498408_499752_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_022743779.1\|500201_502073_-	LTA synthase family protein	NA	NA	NA	NA
WP_022743780.1\|502265_502835_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_022743781.1\|502906_503866_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_022743782.1\|504058_504637_-	lipolytic protein G-D-S-L family	NA	NA	NA	NA
WP_022743783.1\|504730_505417_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_022743784.1\|506095_507115_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.2e-64	40.7
WP_077394054.1\|507123_508134_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_077394055.1\|508580_509807_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.8e-18	25.8
WP_022743787.1\|510094_510466_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_022743788.1\|510734_511874_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_077394056.1\|512408_513536_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_022743790.1\|513660_514677_+\|coat	CotS family spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_2

695158 : 708428

Caulobacter_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022743953.1\|695158_696514_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	8.0e-59	32.8
WP_022743956.1\|697653_698196_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_022743957.1\|698886_700254_+	general stress protein 16U	K4JRX3	Caulobacter_phage	2.4e-23	35.3
WP_077394108.1\|700404_700983_+	TerD family protein	K4JRX3	Caulobacter_phage	9.0e-28	39.4
WP_077394109.1\|701026_701623_+	TerD family protein	K4JRX3	Caulobacter_phage	1.9e-25	33.8
WP_077394110.1\|701653_702232_+	TerD family protein	K4JRX3	Caulobacter_phage	1.0e-26	39.6
WP_077394111.1\|702294_703020_+	TerC family protein	A0A068EP98	Bacillus_phage	4.3e-51	51.5
WP_077394112.1\|703129_703726_+	Tellurium resistance	NA	NA	NA	NA
WP_022743963.1\|703735_703909_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_077394113.1\|703928_705227_+	hypothetical protein	I7HXI7	Enterobacteria_phage	5.3e-20	28.3
WP_022743965.1\|705285_706830_+	Hsp70 family protein	A0A0N9QXN8	Chrysochromulina_ericina_virus	8.5e-65	33.6
WP_022743966.1\|706835_708428_+	Hsp70 family protein	A0A1V0SC87	Catovirus	1.2e-61	33.0

DBSCAN-SWA_3

1489247 : 1499261

Prochlorococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077394345.1\|1489247_1492994_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.6e-32	25.0
WP_022744582.1\|1493159_1493639_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.8e-27	45.6
WP_022744583.1\|1493638_1494346_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	9.6e-48	43.5
WP_022744584.1\|1494703_1496134_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.0e-56	32.6
WP_022744585.1\|1496143_1497145_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	5.9e-67	44.9
WP_022744586.1\|1497132_1497744_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	3.2e-23	37.4
WP_077394346.1\|1497758_1499261_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.4e-35	45.0

DBSCAN-SWA_4

1946561 : 1993937

Clostridium_phage(50.0%)

portal,capsid,plate,tail,transposase,protease,terminase,head,integrase

attL 1948245:1948304|attR 1991928:1992010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140395247.1\|1946561_1947500_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	6.3e-79	63.7
WP_022745314.1\|1947907_1948096_+	hypothetical protein	NA	NA	NA	NA
1948245:1948304	attL	NA	NA	NA	NA
WP_077394417.1\|1948431_1949346_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_077394418.1\|1950367_1951048_-	hypothetical protein	NA	NA	NA	NA
WP_077394419.1\|1951231_1951561_+	DUF3102 domain-containing protein	A0A2H4J025	uncultured_Caudovirales_phage	8.8e-12	43.9
WP_077395173.1\|1952740_1953319_+	HNH endonuclease	NA	NA	NA	NA
WP_077394420.1\|1953366_1953570_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155762448.1\|1953762_1953933_+	hypothetical protein	NA	NA	NA	NA
WP_077394421.1\|1953889_1954270_+	hypothetical protein	NA	NA	NA	NA
WP_077394422.1\|1954701_1955529_+	addiction module toxin, HicA family	NA	NA	NA	NA
WP_022745633.1\|1955736_1956675_-\|transposase	transposase	NA	NA	NA	NA
WP_077394423.1\|1956831_1960113_+	hypothetical protein	NA	NA	NA	NA
WP_077395174.1\|1960183_1960366_+	hypothetical protein	NA	NA	NA	NA
WP_077394424.1\|1960381_1961470_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_077394425.1\|1961504_1961891_+	hypothetical protein	NA	NA	NA	NA
WP_077394426.1\|1962562_1963255_+	hypothetical protein	NA	NA	NA	NA
WP_077394427.1\|1963347_1964112_+	hypothetical protein	NA	NA	NA	NA
WP_077394428.1\|1964309_1965059_+	Bro-N domain-containing protein	A0A2D1GQG9	Lysinibacillus_phage	1.3e-31	48.0
WP_077394429.1\|1965210_1965741_+	hypothetical protein	NA	NA	NA	NA
WP_155762449.1\|1965760_1965910_+	hypothetical protein	NA	NA	NA	NA
WP_077394430.1\|1965909_1966272_+	hypothetical protein	NA	NA	NA	NA
WP_077394431.1\|1966349_1966643_+	hypothetical protein	NA	NA	NA	NA
WP_077394432.1\|1966748_1967315_+	hypothetical protein	NA	NA	NA	NA
WP_077394433.1\|1967466_1967748_+	hypothetical protein	NA	NA	NA	NA
WP_077394434.1\|1967799_1968225_+	HNH endonuclease	A0A0A7RUV1	Clostridium_phage	1.1e-22	44.6
WP_077394435.1\|1968390_1968858_+\|terminase	P27 family phage terminase small subunit	A0A0A7S147	Clostridium_phage	1.5e-60	76.1
WP_077394436.1\|1968850_1970575_+\|terminase	terminase large subunit	A0A0A7RWL3	Clostridium_phage	2.3e-228	66.5
WP_077394437.1\|1970577_1970811_+	hypothetical protein	NA	NA	NA	NA
WP_077394438.1\|1970820_1972104_+\|portal	phage portal protein	A6M949	Geobacillus_virus	4.4e-75	39.0
WP_140395253.1\|1972093_1972837_+\|protease	Clp protease ClpP	A0A2H4JC29	uncultured_Caudovirales_phage	1.8e-60	55.0
WP_077394439.1\|1972924_1974124_+\|capsid	phage major capsid protein	A0A2H4JHG1	uncultured_Caudovirales_phage	3.8e-36	32.1
WP_077394440.1\|1974169_1974448_+\|head,tail	phage gp6-like head-tail connector protein	A0A0A7RWM0	Clostridium_phage	2.2e-24	55.7
WP_077394441.1\|1974456_1974822_+\|head	phage head closure protein	NA	NA	NA	NA
WP_077394442.1\|1974814_1975237_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_077394443.1\|1975246_1975720_+	hypothetical protein	NA	NA	NA	NA
WP_077394444.1\|1975740_1976832_+\|tail	phage tail protein	A0A0A8WJL8	Clostridium_phage	5.5e-42	33.3
WP_077394445.1\|1976846_1977281_+\|terminase	terminase	NA	NA	NA	NA
WP_077394446.1\|1977363_1977771_+	hypothetical protein	NA	NA	NA	NA
WP_077394447.1\|1978070_1980071_+	hypothetical protein	A0A2H4J4V9	uncultured_Caudovirales_phage	3.4e-34	36.4
WP_077394448.1\|1980872_1981781_+	hypothetical protein	NA	NA	NA	NA
WP_077394449.1\|1981794_1982100_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_077394450.1\|1982115_1982562_+	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_077394451.1\|1982563_1983610_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	1.7e-64	40.6
WP_077394452.1\|1983611_1985594_+	hypothetical protein	A0A0A7S1G0	Clostridium_phage	4.6e-31	32.6
WP_077394453.1\|1985597_1986215_+	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	3.9e-53	49.8
WP_077394454.1\|1986233_1987235_+	hypothetical protein	NA	NA	NA	NA
WP_077394455.1\|1987238_1987559_+	hypothetical protein	A0A0A8WID3	Clostridium_phage	1.6e-05	36.5
WP_077394456.1\|1987558_1987717_+	XkdX family protein	A0A0A7S0E7	Clostridium_phage	1.3e-05	53.7
WP_077394457.1\|1987948_1988995_+	Ig domain-containing protein	A0A1L2BYA9	Clostridium_phage	7.4e-12	33.7
WP_077394458.1\|1989077_1989314_+	hypothetical protein	NA	NA	NA	NA
WP_077394459.1\|1989371_1989767_+	hypothetical protein	A0A286QP03	Streptococcus_phage	1.9e-05	46.8
WP_077867635.1\|1989783_1990644_+	hypothetical protein	A0A0S2MV84	Bacillus_phage	3.1e-08	29.9
WP_077394460.1\|1990887_1991400_+	hypothetical protein	NA	NA	NA	NA
WP_077394461.1\|1991400_1991676_+	hypothetical protein	A0A2P0VP25	Tetraselmis_virus	7.8e-06	43.4
WP_022745317.1\|1991929_1992223_-	ACT domain-containing protein	NA	NA	NA	NA
1991928:1992010	attR	NA	NA	NA	NA
WP_077394462.1\|1992215_1993937_-	biosynthetic-type acetolactate synthase large subunit	G8DDL3	Micromonas_pusilla_virus	1.5e-54	27.8

DBSCAN-SWA_5

2497446 : 2504965

Clostridium_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022746414.1\|2497446_2498250_-	glycoside hydrolase family protein	A0A0M5M782	Salmonella_phage	2.4e-10	33.8
WP_022746415.1\|2498307_2498715_-	hypothetical protein	M9Q2G0	Clostridium_phage	6.6e-25	47.4
WP_022746416.1\|2498735_2498972_-	hemolysin XhlA	A0A0A7S0T7	Clostridium_phage	7.4e-05	35.5
WP_022746417.1\|2499087_2500353_-	DUF11 domain-containing protein	A0A1L2BYA9	Clostridium_phage	9.4e-54	56.8
WP_022746418.1\|2500579_2500837_-	hypothetical protein	NA	NA	NA	NA
WP_022746419.1\|2500840_2501278_-	hypothetical protein	NA	NA	NA	NA
WP_022746420.1\|2501296_2502220_-	hypothetical protein	NA	NA	NA	NA
WP_022746421.1\|2502235_2502847_-	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	3.5e-54	54.7
WP_022746422.1\|2502850_2504965_-	hypothetical protein	A0A0A7S1G0	Clostridium_phage	6.6e-68	46.8

DBSCAN-SWA_6

2809347 : 2818389

Clostridium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022746692.1\|2809347_2811219_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.1e-25	30.5
WP_022746693.1\|2811318_2812353_-	autolytic lysozyme	Q0SPG7	Clostridium_phage	1.6e-27	35.5
WP_022746694.1\|2812435_2812675_-	small integral membrane protein	A0A286QP03	Streptococcus_phage	2.1e-07	46.8
WP_022746695.1\|2812842_2813049_-	hypothetical protein	NA	NA	NA	NA
WP_140395268.1\|2813743_2814739_-	glycoside hydrolase	A0A0A8WF62	Clostridium_phage	2.8e-21	47.0
WP_022746698.1\|2815235_2816327_-	ribose-phosphate pyrophosphokinase	A0A0K1YAT7	Cronobacter_phage	1.3e-06	24.3
WP_022746699.1\|2816631_2818389_-	helicase	A0A248SJQ0	Salicola_phage	6.1e-59	31.6

DBSCAN-SWA_7

2901026 : 2969390

Clostridium_phage(42.86%)

portal,plate,tail,transposase,head,holin,integrase

attL 2941636:2941653|attR 2949229:2949246

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022746778.1\|2901026_2901905_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	6.6e-14	26.0
WP_022746779.1\|2901997_2902630_-	stage II sporulation protein M	NA	NA	NA	NA
WP_077394690.1\|2903233_2904532_-	uracil permease	Q9KX94	Enterobacteria_phage	2.6e-67	37.5
WP_022746782.1\|2905102_2905711_-	TQXA domain-containing protein	NA	NA	NA	NA
WP_041716268.1\|2906082_2906286_-	hypothetical protein	NA	NA	NA	NA
WP_077394693.1\|2908472_2910056_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	2.4e-59	31.4
WP_022746784.1\|2910236_2910548_-	hypothetical protein	NA	NA	NA	NA
WP_022746785.1\|2910978_2911167_+	hypothetical protein	NA	NA	NA	NA
WP_077394694.1\|2911395_2912139_-	hypothetical protein	NA	NA	NA	NA
WP_155762453.1\|2912207_2912351_-	hypothetical protein	NA	NA	NA	NA
WP_022746797.1\|2912656_2913481_-	sporulation transcription factor Spo0A	W8CYM9	Bacillus_phage	7.3e-07	30.5
WP_077394695.1\|2913985_2915176_-	SpoIVB peptidase	NA	NA	NA	NA
WP_022746800.1\|2917159_2917612_-	arginine repressor	NA	NA	NA	NA
WP_022746801.1\|2917608_2918463_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_077394696.1\|2918480_2919290_-	TlyA family RNA methyltransferase	NA	NA	NA	NA
WP_077394697.1\|2919302_2921159_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_077394698.1\|2921176_2922046_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_022746805.1\|2922032_2922257_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_077394699.1\|2922395_2923604_-	exodeoxyribonuclease VII large subunit	A0A1V0SC03	Catovirus	9.0e-46	31.0
WP_022746807.1\|2923593_2924442_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	8.0e-33	40.4
WP_022746808.1\|2924609_2925011_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_022746809.1\|2925135_2925516_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_022746810.1\|2925616_2926153_-	SpoIIIAH-like protein	NA	NA	NA	NA
WP_022746811.1\|2926192_2926813_-	stage III sporulation protein AG	NA	NA	NA	NA
WP_077394700.1\|2926829_2927429_-	stage III sporulation protein AF	NA	NA	NA	NA
WP_022746813.1\|2927435_2928725_-	stage III sporulation protein AE	NA	NA	NA	NA
WP_022746814.1\|2928734_2929118_-	stage III sporulation protein AD	NA	NA	NA	NA
WP_022746815.1\|2929126_2929324_-	stage III sporulation protein AC	NA	NA	NA	NA
WP_022746816.1\|2929414_2929933_-	stage III sporulation protein SpoAB	NA	NA	NA	NA
WP_022746817.1\|2929920_2930841_-	stage III sporulation protein AA	NA	NA	NA	NA
WP_022746818.1\|2931152_2931521_-	hypothetical protein	NA	NA	NA	NA
WP_022746819.1\|2931791_2932349_-	elongation factor P	NA	NA	NA	NA
WP_022746820.1\|2932523_2932883_-	hypothetical protein	NA	NA	NA	NA
WP_022746821.1\|2932875_2933292_-	hypothetical protein	NA	NA	NA	NA
WP_077394701.1\|2933269_2933908_-	hypothetical protein	NA	NA	NA	NA
WP_022746823.1\|2933946_2934387_-	hypothetical protein	NA	NA	NA	NA
WP_022746824.1\|2934377_2934842_-	hypothetical protein	NA	NA	NA	NA
WP_022746825.1\|2934819_2935260_-	hypothetical protein	NA	NA	NA	NA
WP_022746826.1\|2935256_2935703_-	type II secretion system protein	NA	NA	NA	NA
WP_077394702.1\|2935703_2935913_-	hypothetical protein	NA	NA	NA	NA
WP_077394703.1\|2936036_2936381_-	hypothetical protein	NA	NA	NA	NA
WP_077394704.1\|2937399_2938269_-	hypothetical protein	NA	NA	NA	NA
WP_077394705.1\|2938671_2939523_-	hypothetical protein	A0A0M4S6X1	Salmonella_phage	1.3e-22	31.6
WP_077394706.1\|2939605_2939980_-\|transposase	transposase	NA	NA	NA	NA
WP_077394707.1\|2939981_2941952_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2941636:2941653	attL	NA	NA	NA	NA
WP_077394708.1\|2941944_2943081_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_077394709.1\|2943229_2944072_-	hypothetical protein	NA	NA	NA	NA
WP_077394710.1\|2944064_2944646_-	hypothetical protein	NA	NA	NA	NA
WP_155762454.1\|2945234_2945390_-	hypothetical protein	NA	NA	NA	NA
WP_077394711.1\|2945472_2946504_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_077394712.1\|2946698_2946884_-	hypothetical protein	NA	NA	NA	NA
WP_077394713.1\|2946987_2947566_-	hypothetical protein	NA	NA	NA	NA
WP_077394714.1\|2947892_2948723_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_077394715.1\|2948981_2949869_-	hypothetical protein	Q0SPG7	Clostridium_phage	2.2e-33	41.1
2949229:2949246	attR	NA	NA	NA	NA
WP_077394716.1\|2949934_2950363_-	hypothetical protein	M9Q2G0	Clostridium_phage	1.4e-30	51.9
WP_077394717.1\|2950417_2950834_-\|holin	phage holin family protein	M9Q253	Clostridium_phage	1.4e-43	62.8
WP_140395198.1\|2950962_2951292_-	hypothetical protein	NA	NA	NA	NA
WP_140395196.1\|2951781_2952048_-	hypothetical protein	NA	NA	NA	NA
WP_077394720.1\|2952062_2954210_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	7.2e-54	67.3
WP_022747087.1\|2954213_2954825_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	8.8e-50	46.2
WP_022747088.1\|2954821_2955910_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	7.8e-81	48.0
WP_022747089.1\|2955902_2956343_-	DUF2634 domain-containing protein	A0A0A7RUS1	Clostridium_phage	1.9e-25	45.5
WP_022747090.1\|2956343_2956661_-	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_077393850.1\|2956675_2957419_-	hypothetical protein	A0A1J0GW44	Streptomyces_phage	3.5e-16	33.3
WP_022747092.1\|2958396_2959098_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7RTT3	Clostridium_phage	6.8e-30	45.3
WP_022747093.1\|2959148_2961119_-	hypothetical protein	A0A218KCH0	Bacillus_phage	1.6e-36	36.8
WP_022747094.1\|2961145_2961292_-	hypothetical protein	NA	NA	NA	NA
WP_022747095.1\|2961309_2961723_-	hypothetical protein	NA	NA	NA	NA
WP_022747096.1\|2961748_2962213_-	hypothetical protein	NA	NA	NA	NA
WP_022747097.1\|2962280_2963330_-\|tail	phage tail sheath protein	A0A0A8WJL8	Clostridium_phage	4.1e-47	34.2
WP_022747098.1\|2963347_2963779_-	hypothetical protein	NA	NA	NA	NA
WP_022747099.1\|2963785_2964157_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_022747100.1\|2964149_2964479_-	hypothetical protein	NA	NA	NA	NA
WP_022747101.1\|2964481_2964754_-	hypothetical protein	NA	NA	NA	NA
WP_022747102.1\|2964802_2965834_-	hypothetical protein	C9E2J5	Enterococcus_phage	1.4e-60	38.7
WP_022747104.1\|2966239_2966878_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_022747105.1\|2967033_2967927_-\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A1V0DZW9	Clostridioides_phage	9.0e-35	38.2
WP_022747107.1\|2968052_2969390_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	8.0e-104	50.7

DBSCAN-SWA_8

2982889 : 2991329

Clostridium_phage(50.0%)

integrase

attL 2984214:2984227|attR 2992241:2992254

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077394734.1\|2982889_2983447_-	hypothetical protein	A0A220BY35	Staphylococcus_phage	2.4e-25	40.1
WP_077394735.1\|2983521_2984544_-	phosphoadenosine phosphosulfate reductase family protein	F8UBB2	Clostridium_phage	2.4e-68	42.9
2984214:2984227	attL	NA	NA	NA	NA
WP_077394736.1\|2984603_2984948_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077394737.1\|2984967_2985552_-	hypothetical protein	NA	NA	NA	NA
WP_077394738.1\|2985554_2985806_-	hypothetical protein	NA	NA	NA	NA
WP_155762458.1\|2986138_2986300_-	hypothetical protein	NA	NA	NA	NA
WP_077394739.1\|2986312_2986954_-	AAA family ATPase	A0A2I7R7K9	Vibrio_phage	5.0e-27	35.9
WP_077394740.1\|2986941_2987154_-	hypothetical protein	NA	NA	NA	NA
WP_077394741.1\|2987162_2987357_-	hypothetical protein	NA	NA	NA	NA
WP_155762459.1\|2987398_2987572_-	hypothetical protein	NA	NA	NA	NA
WP_077394742.1\|2987692_2987968_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	3.6e-19	54.8
WP_077394743.1\|2988081_2988801_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	1.4e-22	41.3
WP_077394744.1\|2988812_2989019_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077394745.1\|2989252_2989687_+	helix-turn-helix transcriptional regulator	M9Q2L3	Clostridium_phage	3.7e-18	40.7
WP_077395183.1\|2989736_2990150_+	ImmA/IrrE family metallo-endopeptidase	M9Q1J0	Clostridium_phage	9.9e-37	58.1
WP_077394746.1\|2990240_2991329_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	6.1e-17	26.4
2992241:2992254	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3182865 : 3246064

Bacillus_phage(37.5%)

transposase,tRNA,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077394772.1\|3182865_3184005_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.2e-89	45.9
WP_022746990.1\|3184247_3185273_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_022746991.1\|3185459_3186500_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	5.4e-07	31.4
WP_022746992.1\|3186585_3187182_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_077394773.1\|3187644_3188226_-	hypothetical protein	NA	NA	NA	NA
WP_077394774.1\|3188461_3189331_-	radical SAM protein	NA	NA	NA	NA
WP_022746996.1\|3189327_3190233_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077394775.1\|3190701_3192339_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_022746998.1\|3192598_3194029_-	anion permease	NA	NA	NA	NA
WP_022746999.1\|3194722_3195550_+	pyridoxamine kinase	NA	NA	NA	NA
WP_022747000.1\|3195610_3196261_+	TIGR04100 family radical SAM protein	NA	NA	NA	NA
WP_022747001.1\|3196440_3197238_-	TIGR00266 family protein	NA	NA	NA	NA
WP_140395283.1\|3197503_3198115_-	DedA family protein	NA	NA	NA	NA
WP_022747002.1\|3198224_3198812_-	undecaprenyl-diphosphatase	NA	NA	NA	NA
WP_041716282.1\|3199010_3200423_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.3e-37	32.3
WP_022747004.1\|3200419_3201100_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-37	37.3
WP_022747005.1\|3201639_3201945_-\|coat	spore coat protein	NA	NA	NA	NA
WP_077394777.1\|3201970_3202198_-\|coat	spore coat protein	NA	NA	NA	NA
WP_022747007.1\|3202232_3203369_-	glutathione-dependent formaldehyde dehydrogenase	A0A0G2YAX3	Acanthamoeba_polyphaga_mimivirus	2.4e-08	29.2
WP_041716633.1\|3203385_3203745_-\|coat	spore coat protein	NA	NA	NA	NA
WP_041716283.1\|3203802_3204012_-	hypothetical protein	NA	NA	NA	NA
WP_022747010.1\|3204440_3205241_+	transglycosylase domain-containing protein	NA	NA	NA	NA
WP_022747143.1\|3205773_3206775_-	GGGtGRT protein	NA	NA	NA	NA
WP_041716289.1\|3206801_3207494_-	nitrogen fixation protein NifU	NA	NA	NA	NA
WP_041716290.1\|3209432_3210353_-	DMT family transporter	NA	NA	NA	NA
WP_022747148.1\|3210678_3211497_-	hypothetical protein	NA	NA	NA	NA
WP_022747149.1\|3211489_3212071_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_077394778.1\|3212751_3214197_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_022747152.1\|3214475_3215345_-	methionyl aminopeptidase	NA	NA	NA	NA
WP_077394779.1\|3215365_3216046_-	helix-turn-helix transcriptional regulator	O64078	Bacillus_phage	2.3e-06	45.0
WP_022747154.1\|3216528_3217659_+	DUF362 domain-containing protein	NA	NA	NA	NA
WP_022747155.1\|3217855_3219145_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_022747156.1\|3219267_3220116_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_077394780.1\|3220458_3221061_-	hypothetical protein	NA	NA	NA	NA
WP_077394781.1\|3221248_3222694_-	spore cortex-lytic protein	NA	NA	NA	NA
WP_077394782.1\|3222799_3223483_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_022747160.1\|3223745_3224423_+	zinc dependent phospholipase C family protein	NA	NA	NA	NA
WP_077394783.1\|3224557_3225349_-	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_022747162.1\|3225612_3225831_-	hypothetical protein	NA	NA	NA	NA
WP_022747163.1\|3226450_3227038_+	hypothetical protein	NA	NA	NA	NA
WP_022747164.1\|3227297_3227960_+	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	1.9e-29	40.6
WP_022747165.1\|3228166_3228709_-	NADH peroxidase	NA	NA	NA	NA
WP_077394784.1\|3229414_3230296_+	hypothetical protein	NA	NA	NA	NA
WP_077394785.1\|3230445_3231066_+	J domain-containing protein	A0A2H4UVL7	Bodo_saltans_virus	1.1e-07	47.5
WP_077394786.1\|3232038_3233061_-	hypothetical protein	NA	NA	NA	NA
WP_022747170.1\|3233221_3233701_+	hypothetical protein	NA	NA	NA	NA
WP_022747171.1\|3234171_3235614_-	amino acid permease	NA	NA	NA	NA
WP_022747172.1\|3236064_3236907_+	PHP domain-containing protein	NA	NA	NA	NA
WP_022747173.1\|3237186_3238584_-	aminopeptidase	NA	NA	NA	NA
WP_022747174.1\|3238813_3239725_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_022747175.1\|3239889_3240093_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_022747176.1\|3241215_3241614_-	hypothetical protein	NA	NA	NA	NA
WP_022747177.1\|3241631_3241877_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_022747178.1\|3242042_3242579_-	hypothetical protein	NA	NA	NA	NA
WP_022747179.1\|3243061_3243865_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_077394788.1\|3244799_3245465_+\|transposase	transposase	NA	NA	NA	NA
WP_155762462.1\|3245566_3246064_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

3709920 : 3763646

uncultured_Caudovirales_phage(53.85%)

portal,capsid,plate,tail,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022745633.1\|3709920_3710859_+\|transposase	transposase	NA	NA	NA	NA
WP_022747708.1\|3711143_3712328_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_022747711.1\|3712379_3713072_-	class I SAM-dependent methyltransferase	A0A1V0SKE1	Klosneuvirus	9.8e-05	31.4
WP_041716314.1\|3713374_3713881_-	hypothetical protein	NA	NA	NA	NA
WP_077394896.1\|3715254_3717117_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_077394897.1\|3717753_3719463_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-09	39.8
WP_077394898.1\|3720035_3720758_+	hypothetical protein	NA	NA	NA	NA
WP_022747735.1\|3721163_3721388_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_022747740.1\|3721430_3721649_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_077394900.1\|3722721_3722934_-	hypothetical protein	NA	NA	NA	NA
WP_077394901.1\|3723024_3723615_-	hypothetical protein	NA	NA	NA	NA
WP_077394902.1\|3726762_3727341_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_022747770.1\|3727941_3728508_-	CbrC family protein	NA	NA	NA	NA
WP_077394903.1\|3728525_3729353_-	hypothetical protein	NA	NA	NA	NA
WP_077394904.1\|3730638_3730896_-	hypothetical protein	NA	NA	NA	NA
WP_077394905.1\|3731218_3731527_-	hypothetical protein	NA	NA	NA	NA
WP_077394906.1\|3731545_3732010_-	hypothetical protein	NA	NA	NA	NA
WP_077394907.1\|3732376_3732802_+	hypothetical protein	NA	NA	NA	NA
WP_077394908.1\|3732871_3733210_+	hypothetical protein	NA	NA	NA	NA
WP_077394909.1\|3733450_3735160_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.6e-06	28.8
WP_077394910.1\|3735483_3736107_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_077394911.1\|3736579_3737959_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-13	57.3
WP_022747826.1\|3738786_3739020_-	hemolysin XhlA	A0A0A7S0T7	Clostridium_phage	2.7e-15	52.0
WP_022747842.1\|3739381_3739816_-	hypothetical protein	NA	NA	NA	NA
WP_022747847.1\|3739831_3740866_-	hypothetical protein	S6B1J7	Thermus_phage	1.7e-05	42.7
WP_022747851.1\|3740880_3741498_-	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	5.2e-58	55.9
WP_077394912.1\|3741500_3744014_-	hypothetical protein	A0A0A7S1G0	Clostridium_phage	1.3e-35	63.1
WP_064530754.1\|3744014_3745049_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	1.1e-63	43.8
WP_022747865.1\|3745116_3745554_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	5.8e-27	44.1
WP_140395272.1\|3745546_3745888_-	hypothetical protein	A0A2H4J746	uncultured_Caudovirales_phage	9.4e-25	52.8
WP_022747875.1\|3745874_3746903_-	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	1.0e-74	47.8
WP_022747880.1\|3746907_3747594_-	SH3 domain-containing protein	A0A2H4J045	uncultured_Caudovirales_phage	3.9e-54	46.9
WP_077394913.1\|3747669_3751383_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	1.5e-78	30.9
WP_077394914.1\|3751569_3752010_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	3.3e-30	50.3
WP_022747893.1\|3752268_3752685_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	6.4e-44	61.4
WP_022747896.1\|3752704_3754129_-\|tail	phage tail sheath protein	A0A2H4J1N7	uncultured_Caudovirales_phage	9.0e-170	64.0
WP_140395274.1\|3754128_3754323_-	hypothetical protein	A0A0A8WEX5	Clostridium_phage	6.7e-12	59.0
WP_077394916.1\|3754651_3755482_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	1.7e-91	59.9
WP_077394917.1\|3755496_3755883_-	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	8.4e-30	52.8
WP_022747909.1\|3755879_3756206_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	2.1e-26	58.6
WP_077394918.1\|3756292_3757342_-\|capsid	phage capsid protein	A0A0A7RU11	Clostridium_phage	2.5e-92	52.6
WP_077394919.1\|3757443_3757848_-	hypothetical protein	NA	NA	NA	NA
WP_077394920.1\|3757863_3758475_-\|capsid	phage capsid protein	S5M9M5	Brevibacillus_phage	2.6e-09	31.7
WP_077394921.1\|3758693_3760337_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	4.1e-134	51.8
WP_022747935.1\|3761384_3762074_-	intron-associated endonuclease 1	A0A1D6Z2A9	Staphylococcus_phage	1.8e-14	45.7
WP_022747942.1\|3762698_3763646_-\|terminase	PBSX phage terminase small subunit	E5DV49	Deep-sea_thermophilic_phage	5.2e-41	36.0

DBSCAN-SWA_11

4556623 : 4565114

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022750200.1\|4556623_4557493_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	3.6e-81	53.9
WP_022750204.1\|4558006_4558816_+	phage replisome organizer	V5UQV4	Oenococcus_phage	2.4e-18	41.2
WP_022750206.1\|4559300_4561028_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.4e-140	44.0
WP_022750212.1\|4561484_4562555_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	4.6e-78	47.3
WP_022750216.1\|4562641_4563523_-	dTDP-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	5.6e-13	27.5
WP_022750218.1\|4563616_4564198_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.3e-52	54.5
WP_022750222.1\|4564208_4565114_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-101	61.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP016091.1|WP_022746825.1|2934819_2935260_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP016091.1|WP_022746825.1|2934819_2935260_-|hypothetical-protein

2934819_2935260_-

146 aa aa

2901026-2969390

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP016091_3	TypeI-B	3.6\|2338484\|36\|NZ_CP016091\|PILER-CR,CRISPRCasFinder,CRT	2338484-2338519	36	2948576-2948611	1

1. spacer 3.6|2338484|36|NZ_CP016091|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016091 position: 2948576-2948611, mismatch: 1

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattagaatcagatatactactagttg	Protospacer
******************.*****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016091

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information