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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016092 Clostridium saccharobutylicum strain NCP 195, complete genome 9 crisprs cas3,cas14j,DEDDh,WYL,c2c9_V-U4,csa3,RT,cas6,cas8b1,cas7b,cas5,cas2,cas1,cas4,DinG 3 14 9 0

Results visualization

1. NZ_CP016092
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_1 148425-148574 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_2 1658957-1659039 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_3 2252451-2253592 TypeI-B NA
17 spacers
cas5,cas7b,cas8b1,cas6,RT,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_4 2818091-2820275 TypeI-B II-B
33 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_5 4329882-4329982 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_6 4536586-4536759 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_7 4537679-4538003 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_8 4652297-4652389 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016092_9 4733677-4733772 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP016092_7 7.3|4537866|20|NZ_CP016092|PILER-CR 4537866-4537885 20 NZ_CP016092.1 4537659-4537678 1 0.95
NZ_CP016092_7 7.3|4537866|20|NZ_CP016092|PILER-CR 4537866-4537885 20 NZ_CP016092.1 4538004-4538023 1 0.95
NZ_CP016092_3 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2253135-2253170 36 NZ_CP016092.1 3308494-3308529 2 0.944
NZ_CP016092_7 7.4|4537935|20|NZ_CP016092|PILER-CR 4537935-4537954 20 NZ_CP016092.1 4537659-4537678 2 0.9
NZ_CP016092_7 7.4|4537935|20|NZ_CP016092|PILER-CR 4537935-4537954 20 NZ_CP016092.1 4538004-4538023 2 0.9

1. spacer 7.3|4537866|20|NZ_CP016092|PILER-CR matches to position: 4537659-4537678, mismatch: 1, identity: 0.95

actacaaccagaaaatgcac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** *********

2. spacer 7.3|4537866|20|NZ_CP016092|PILER-CR matches to position: 4538004-4538023, mismatch: 1, identity: 0.95

actacaaccagaaaatgcac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** *********

3. spacer 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to position: 3308494-3308529, mismatch: 2, identity: 0.944

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattagaatcagatatactactggttg	Protospacer
******************.************.****

4. spacer 7.4|4537935|20|NZ_CP016092|PILER-CR matches to position: 4537659-4537678, mismatch: 2, identity: 0.9

actacaaccagaaaatgtac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** ******.**

5. spacer 7.4|4537935|20|NZ_CP016092|PILER-CR matches to position: 4538004-4538023, mismatch: 2, identity: 0.9

actacaaccagaaaatgtac	CRISPR spacer
actacaaccataaaatgcac	Protospacer
********** ******.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016092_4 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818970-2819005 36 LC519601 Cronobacter phage vB_CsaP_009 DNA, complete genome 75914-75949 7 0.806
NZ_CP016092_4 4.19|2819296|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819296-2819331 36 NC_008014 Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence 156164-156199 7 0.806
NZ_CP016092_4 4.19|2819296|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819296-2819331 36 NC_020130 Lawsonia intracellularis N343 plasmid 3, complete sequence 156186-156221 7 0.806
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 NZ_CP046706 Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence 151973-152006 7 0.794
NZ_CP016092_3 3.4|2252678|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252678-2252712 35 NZ_CP040462 Enterococcus sp. M190262 plasmid pM190262, complete sequence 10539-10573 8 0.771
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 NZ_CP019876 Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence 55275-55309 8 0.771
NZ_CP016092_4 4.13|2818905|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818905-2818939 35 NZ_CP033461 Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence 20689-20723 8 0.771
NZ_CP016092_4 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818970-2819005 36 NZ_CP022092 Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed2, complete sequence 12923-12958 8 0.778
NZ_CP016092_4 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818970-2819005 36 NZ_CP035295 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed1, complete sequence 36521-36556 8 0.778
NZ_CP016092_4 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818970-2819005 36 NC_013378 Staphylococcus epidermidis plasmid SAP105B, complete sequence 5898-5933 8 0.778
NZ_CP016092_4 4.15|2819036|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819036-2819069 34 AP014229 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C90-MedDCM-OCT-S34-C72, *** SEQUENCING IN PROGRESS *** 5873-5906 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MK764441 Flavobacterium phage FPSV-F12, complete genome 58378-58411 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 KU599886 Flavobacterium phage Fpv20, complete genome 47573-47606 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 NC_031931 Flavobacterium phage Fpv2, complete genome 47394-47427 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 KT876726 Flavobacterium phage FpV21, complete genome 47385-47418 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 KU599877 Flavobacterium phage Fpv1, complete genome 47419-47452 8 0.765
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MK764449 Flavobacterium phage FPSV-S29, complete genome 47076-47109 8 0.765
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 MK268686 Enterococcus phage vB_EfaH_EF1TV, complete genome 25894-25929 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 MK721192 Enterococcus phage vB_EfaM_Ef2.3, complete genome 27729-27764 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 CAJDJZ010000002 Enterococcus phage vB_EfaH_149 genome assembly, contig: phage149-genome, whole genome shotgun sequence 130124-130159 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 AP018714 Enterococcus phage phiEF17H DNA, complete sequence 131430-131465 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 MK693030 Enterococcus phage vB_EfaM_Ef2.1, complete genome 25301-25336 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 CAJDJY010000002 Enterococcus phage 156 genome assembly, contig: phage156-genome, whole genome shotgun sequence 128974-129009 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 MN854830 Enterococcus phage PBEF129, complete genome 25198-25233 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 LR031359 Enterococcus phage 156, complete genome 128974-129009 8 0.778
NZ_CP016092_4 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2820014-2820049 36 KJ801817 Enterococcus phage ECP3, complete genome 109290-109325 8 0.778
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 NZ_CP041064 Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence 111993-112027 9 0.743
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 NZ_CP032530 Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence 40546-40580 9 0.743
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 CP041518 Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence 78660-78694 9 0.743
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 NZ_CP018876 Bacillus megaterium strain JX285 plasmid 3, complete sequence 25302-25336 9 0.743
NZ_CP016092_3 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2253135-2253170 36 MT774386 CrAssphage cr110_1, complete genome 72552-72587 9 0.75
NZ_CP016092_3 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2253135-2253170 36 MT774383 CrAssphage cr11_1, complete genome 89075-89110 9 0.75
NZ_CP016092_4 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819491-2819526 36 NZ_CP014570 Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence 2519-2554 9 0.75
NZ_CP016092_4 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819491-2819526 36 KU878088 Bacillus phage AR9, complete genome 90297-90332 9 0.75
NZ_CP016092_4 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819491-2819526 36 MF360957 Bacillus virus PBS1, complete genome 600-635 9 0.75
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MN693756 Marine virus AFVG_250M718, complete genome 30800-30833 9 0.735
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MN694439 Marine virus AFVG_250M296, complete genome 29997-30030 9 0.735
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MN693803 Marine virus AFVG_250M716, complete genome 6799-6832 9 0.735
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MN694282 Marine virus AFVG_250M297, complete genome 30009-30042 9 0.735
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MT701588 Klebsiella phage Metamorpho, complete genome 16877-16910 9 0.735
NZ_CP016092_4 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819753-2819786 34 MN694541 Marine virus AFVG_250M717, complete genome 30412-30445 9 0.735
NZ_CP016092_9 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder 4733710-4733739 30 NC_010105 Enterobacteria phage JS98, complete genome 97411-97440 9 0.7
NZ_CP016092_9 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder 4733710-4733739 30 MH791409 UNVERIFIED: Escherichia phage EcWhh-1, complete genome 159174-159203 9 0.7
NZ_CP016092_9 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder 4733710-4733739 30 NC_012741 Enterobacteria phage JS10, complete genome 96487-96516 9 0.7
NZ_CP016092_9 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder 4733710-4733739 30 MK310184 Phage NC-G, complete genome 40245-40274 9 0.7
NZ_CP016092_9 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder 4733710-4733739 30 EU863409 Enterobacteria phage JS10, complete sequence 96487-96516 9 0.7
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 KF751797 Campylobacter phage CJIE4-5, complete genome 14225-14259 10 0.714
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 KF751794 Campylobacter phage CJIE4-2, complete genome 13978-14012 10 0.714
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 KF751795 Campylobacter phage CJIE4-3, complete genome 12306-12340 10 0.714
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 KF751796 Campylobacter phage CJIE4-4, complete genome 12344-12378 10 0.714
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 KF751793 Campylobacter phage CJIE4-1, complete genome 15252-15286 10 0.714
NZ_CP016092_4 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818579-2818612 34 AP014235 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S38-C9, *** SEQUENCING IN PROGRESS *** 7892-7925 10 0.706
NZ_CP016092_4 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818970-2819005 36 EF506570 Spiroplasma kunkelii virus SkV1_CR2-3x, complete genome 3059-3094 10 0.722
NZ_CP016092_4 4.17|2819165|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819165-2819199 35 NC_018878 Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence 129490-129524 10 0.714
NZ_CP016092_4 4.17|2819165|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2819165-2819199 35 MN693272 Marine virus AFVG_25M206, complete genome 40569-40603 10 0.714
NZ_CP016092_4 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818579-2818612 34 NZ_LR214952 Mycoplasma neurolyticum strain NCTC10166 plasmid 2 13682-13715 11 0.676
NZ_CP016092_4 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder 2818579-2818612 34 NZ_LR214954 Mycoplasma neurolyticum strain NCTC10166 plasmid 4 8556-8589 11 0.676
NZ_CP016092_1 1.1|148480|40|NZ_CP016092|CRISPRCasFinder 148480-148519 40 NZ_CP035512 Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence 14175-14214 12 0.7
NZ_CP016092_3 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR 2252873-2252907 35 NZ_CP053469 Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence 30024-30058 12 0.657

1. spacer 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to LC519601 (Cronobacter phage vB_CsaP_009 DNA, complete genome) position: , mismatch: 7, identity: 0.806

aactatattaatttcatcatcttttaaatcaatgta	CRISPR spacer
atcactatcaatttcatcatcttttaaaacaatatc	Protospacer
* *  ***.******************* ****.* 

2. spacer 4.19|2819296|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.806

ttttactgatacaaacactaaaactgatactaaaac	CRISPR spacer
tgatgctggtacaaacactgaaactgatactaaagg	Protospacer
*  *.***.**********.**************. 

3. spacer 4.19|2819296|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.806

ttttactgatacaaacactaaaactgatactaaaac	CRISPR spacer
tgatgctggtacaaacactgaaactgatactaaagg	Protospacer
*  *.***.**********.**************. 

4. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046706 (Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence) position: , mismatch: 7, identity: 0.794

atttagaaatagataaaactcaagagaatagaat--	CRISPR spacer
gtttagaaatatataaaattca--agatttgaattt	Protospacer
.********** ******.***  *** * ****  

5. spacer 3.4|2252678|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 8, identity: 0.771

gctagt--aatgaagatgatgatgtagacactactaa	CRISPR spacer
--caattaaatgaagtttatgatgtagacactacaat	Protospacer
  .*.*  ******* * **************** * 

6. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019876 (Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence) position: , mismatch: 8, identity: 0.771

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
gaacctttttctttattatttttagttcgttggct	Protospacer
*** ********** ********** *.    ***

7. spacer 4.13|2818905|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033461 (Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence) position: , mismatch: 8, identity: 0.771

aaagtattt---aaaatagagaggtgataaatgatgag	CRISPR spacer
---ctatatcgaaaagtagaaaggtgataaatgatgaa	Protospacer
    *** *   ***.****.****************.

8. spacer 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022092 (Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.778

-aactatattaatttcatcatcttttaaatcaatgta	CRISPR spacer
taaagat-ttaatttcttcatcatttaaatcaattct	Protospacer
 **  ** ******** ***** *********** . 

9. spacer 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP035295 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

-aactatattaatttcatcatcttttaaatcaatgta	CRISPR spacer
taaagat-ttaatttcttcatcatttaaatcaattct	Protospacer
 **  ** ******** ***** *********** . 

10. spacer 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NC_013378 (Staphylococcus epidermidis plasmid SAP105B, complete sequence) position: , mismatch: 8, identity: 0.778

-aactatattaatttcatcatcttttaaatcaatgta	CRISPR spacer
taaagat-ttaatttcttcatcatttaaatcaattct	Protospacer
 **  ** ******** ***** *********** . 

11. spacer 4.15|2819036|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to AP014229 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C90-MedDCM-OCT-S34-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.765

cgaaaactgataatccaagtgaccctgctccttc	CRISPR spacer
ccgaaactgataattcaagtgaccttggttcagc	Protospacer
* .***********.*********.** *.*  *

12. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MK764441 (Flavobacterium phage FPSV-F12, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

13. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to KU599886 (Flavobacterium phage Fpv20, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

14. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NC_031931 (Flavobacterium phage Fpv2, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

15. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to KT876726 (Flavobacterium phage FpV21, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

16. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to KU599877 (Flavobacterium phage Fpv1, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

17. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MK764449 (Flavobacterium phage FPSV-S29, complete genome) position: , mismatch: 8, identity: 0.765

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
atttagaaatggaaaaaactcaagcacaaaacat	Protospacer
**********.** ********** . * *. **

18. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MK268686 (Enterococcus phage vB_EfaH_EF1TV, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

19. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MK721192 (Enterococcus phage vB_EfaM_Ef2.3, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

20. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to CAJDJZ010000002 (Enterococcus phage vB_EfaH_149 genome assembly, contig: phage149-genome, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

21. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to AP018714 (Enterococcus phage phiEF17H DNA, complete sequence) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

22. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MK693030 (Enterococcus phage vB_EfaM_Ef2.1, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

23. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to CAJDJY010000002 (Enterococcus phage 156 genome assembly, contig: phage156-genome, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

24. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN854830 (Enterococcus phage PBEF129, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

25. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to LR031359 (Enterococcus phage 156, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

26. spacer 4.30|2820014|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to KJ801817 (Enterococcus phage ECP3, complete genome) position: , mismatch: 8, identity: 0.778

ggttaatcctaaatcaattgcccattgttccatcaa	CRISPR spacer
tttaaatgctaaatcaattacccattgttccatttc	Protospacer
  * *** ***********.*************.  

27. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

28. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

29. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

30. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.743

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
aatgctttcacttttttatttttagatttcaatcc	Protospacer
.* .****. ******************* *  *.

31. spacer 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.75

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattaaaattagatataagaaagcccg	Protospacer
**************.***********  *  . ..*

32. spacer 3.11|2253135|36|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to MT774383 (CrAssphage cr11_1, complete genome) position: , mismatch: 9, identity: 0.75

ttaaataattattagaattagatatactactagttg	CRISPR spacer
ttaaataattattaaaattagatataagaaagcccg	Protospacer
**************.***********  *  . ..*

33. spacer 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 9, identity: 0.75

gcaaatttaatttaaggaggaaattattattatgtt	CRISPR spacer
tcaaatttaatttaaggagaaaattatgttgaaaag	Protospacer
 ******************.*******  * * .  

34. spacer 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 9, identity: 0.75

gcaaatttaatttaaggaggaaattattattatgtt	CRISPR spacer
cttcatcttctttaaggaaaaaattattattatgtt	Protospacer
 .  **.*  ********..****************

35. spacer 4.22|2819491|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MF360957 (Bacillus virus PBS1, complete genome) position: , mismatch: 9, identity: 0.75

gcaaatttaatttaaggaggaaattattattatgtt	CRISPR spacer
cttcatcttctttaaggaaaaaattattattatgtt	Protospacer
 .  **.*  ********..****************

36. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN693756 (Marine virus AFVG_250M718, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaat---agataaaactcaagagaatagaat	CRISPR spacer
---taatgactgaagataaaacaaaagagaatagaat	Protospacer
   **. .*.   *********  *************

37. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN694439 (Marine virus AFVG_250M296, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaat---agataaaactcaagagaatagaat	CRISPR spacer
---taatgactgaagataaaacaaaagagaatagaat	Protospacer
   **. .*.   *********  *************

38. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN693803 (Marine virus AFVG_250M716, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaat---agataaaactcaagagaatagaat	CRISPR spacer
---taatgactgaagataaaacaaaagagaatagaat	Protospacer
   **. .*.   *********  *************

39. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN694282 (Marine virus AFVG_250M297, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaat---agataaaactcaagagaatagaat	CRISPR spacer
---taatgactgaagataaaacaaaagagaatagaat	Protospacer
   **. .*.   *********  *************

40. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MT701588 (Klebsiella phage Metamorpho, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaatagataaaactcaagagaatagaat	CRISPR spacer
attcagaaatagataaacctcaagcagatgataa	Protospacer
***.************* ****** ..**.. * 

41. spacer 4.26|2819753|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN694541 (Marine virus AFVG_250M717, complete genome) position: , mismatch: 9, identity: 0.735

atttagaaat---agataaaactcaagagaatagaat	CRISPR spacer
---taatgactgaagataaaacaaaagagaatagaat	Protospacer
   **. .*.   *********  *************

42. spacer 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder matches to NC_010105 (Enterobacteria phage JS98, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

43. spacer 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder matches to MH791409 (UNVERIFIED: Escherichia phage EcWhh-1, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

44. spacer 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder matches to NC_012741 (Enterobacteria phage JS10, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

45. spacer 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder matches to MK310184 (Phage NC-G, complete genome) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

46. spacer 9.1|4733710|30|NZ_CP016092|CRISPRCasFinder matches to EU863409 (Enterobacteria phage JS10, complete sequence) position: , mismatch: 9, identity: 0.7

gggcaaacaataatggaacttggtattacc	CRISPR spacer
aagcaaacaataatggaatttcgtaccttt	Protospacer
..****************.** ***.. ..

47. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to KF751797 (Campylobacter phage CJIE4-5, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

48. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

49. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to KF751795 (Campylobacter phage CJIE4-3, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

50. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to KF751796 (Campylobacter phage CJIE4-4, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

51. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.714

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tttattttttgtattttatttttagatttaaactc	Protospacer
   *.***** * ******************  ..

52. spacer 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to AP014235 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S38-C9, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

tttgatttgttttagtcttcttttttttatacaa	CRISPR spacer
aatgatttctttttgtcttcttttttcttttgtc	Protospacer
  ****** **** ************.* *    

53. spacer 4.14|2818970|36|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to EF506570 (Spiroplasma kunkelii virus SkV1_CR2-3x, complete genome) position: , mismatch: 10, identity: 0.722

aactatattaatttcatcatcttttaaatcaatgta-	CRISPR spacer
tttattaataatttcatcattttttaaatc-acgcac	Protospacer
  .  ** ************.********* *.*.* 

54. spacer 4.17|2819165|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 10, identity: 0.714

ccaacagttaatttttccatcttgaccttttatat	CRISPR spacer
ctttcctacaatttttccatcttcagcttttatac	Protospacer
*.  *   .************** * ********.

55. spacer 4.17|2819165|35|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to MN693272 (Marine virus AFVG_25M206, complete genome) position: , mismatch: 10, identity: 0.714

ccaacagttaatttttccatcttgaccttttatat	CRISPR spacer
ttgatacagaatttttccaccttgaccttgtataa	Protospacer
...*.*   **********.********* **** 

56. spacer 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214952 (Mycoplasma neurolyticum strain NCTC10166 plasmid 2) position: , mismatch: 11, identity: 0.676

tttgatttgttttagtcttcttttttttatacaa	CRISPR spacer
acctatttgttttagtcttttttcttttgttttt	Protospacer
 .. ***************.***.****.* .  

57. spacer 4.8|2818579|34|NZ_CP016092|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR214954 (Mycoplasma neurolyticum strain NCTC10166 plasmid 4) position: , mismatch: 11, identity: 0.676

tttgatttgttttagtcttcttttttttatacaa	CRISPR spacer
acctatttgttttagtcttttttcttttgttttt	Protospacer
 .. ***************.***.****.* .  

58. spacer 1.1|148480|40|NZ_CP016092|CRISPRCasFinder matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 12, identity: 0.7

caggttcaagtcctgtctccgcaaccattatatataaaat	CRISPR spacer
caggttcaaatcctgtccccgcaaccatctttacttgctc	Protospacer
*********.*******.**********. *   * .  .

59. spacer 3.7|2252873|35|NZ_CP016092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.657

gaaactttttcttttttatttttagatttaacgct	CRISPR spacer
tcttctttttcttttttattttaatatttcttttc	Protospacer
    ****************** * ****  . ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 416380 : 497790 60 Clostridium_phage(13.33%) integrase,protease,transposase,tRNA,coat attL 425408:425467|attR 470663:470744
DBSCAN-SWA_2 685595 : 698862 12 Caulobacter_phage(44.44%) transposase NA
DBSCAN-SWA_3 956776 : 1017681 51 Erysipelothrix_phage(30.77%) transposase,holin NA
DBSCAN-SWA_4 1466870 : 1476876 7 Prochlorococcus_phage(28.57%) NA NA
DBSCAN-SWA_5 2597579 : 2605098 9 Clostridium_phage(83.33%) NA NA
DBSCAN-SWA_6 2900436 : 2909443 8 Clostridium_phage(33.33%) NA NA
DBSCAN-SWA_7 3315168 : 3365062 61 Clostridium_phage(47.83%) portal,tail,plate,integrase,protease,head attL 3317015:3317033|attR 3359888:3359906
DBSCAN-SWA_8 3851921 : 3911029 52 uncultured_Caudovirales_phage(48.28%) portal,tail,plate,transposase,terminase,capsid NA
DBSCAN-SWA_9 4713943 : 4722433 7 Enterobacteria_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage