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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019699 Novibacillus thermophilus strain SG-1 chromosome, complete genome 4 crisprs cas4,RT,csa3,cas3,cas6,cas8b1,cas7b,cas5,cas1,cas2,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,WYL,DEDDh,csx1 0 7 8 0

Results visualization

1. NZ_CP019699
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019699_1 1589808-1589975 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019699_2 2026822-2028995 TypeIII NA
32 spacers
cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,csm6,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019699_3 2038294-2040862 TypeIII NA
38 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019699_4 3284703-3284828 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019699_3 3.13|2039124|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2039124-2039160 37 NZ_CP014690 Gluconobacter albidus strain TMW2.1191 plasmid pGS1191_1, complete sequence 38451-38487 8 0.784
NZ_CP019699_2 2.19|2028060|35|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2028060-2028094 35 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 38538-38572 10 0.714
NZ_CP019699_3 3.21|2039656|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2039656-2039692 37 NZ_CP012104 Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence 30645-30681 10 0.73
NZ_CP019699_3 3.28|2040121|36|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2040121-2040156 36 NZ_CP039900 Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877b, complete sequence 122755-122790 10 0.722
NZ_CP019699_3 3.28|2040121|36|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2040121-2040156 36 NZ_CP039891 Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499b, complete sequence 122755-122790 10 0.722
NZ_CP019699_3 3.6|2038659|35|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2038659-2038693 35 MT498055 Arthrobacter phage Bumble, complete genome 42513-42547 11 0.686
NZ_CP019699_3 3.24|2039854|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2039854-2039890 37 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5475014-5475050 11 0.703
NZ_CP019699_3 3.30|2040256|34|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT 2040256-2040289 34 NZ_CP024309 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence 244123-244156 11 0.676

1. spacer 3.13|2039124|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014690 (Gluconobacter albidus strain TMW2.1191 plasmid pGS1191_1, complete sequence) position: , mismatch: 8, identity: 0.784

attccgtttcggtggtgaacatgctcgcctt---ttttaa	CRISPR spacer
cttcggtttcggtggtgaacatgctctccccgaattt---	Protospacer
 *** ********************* **..   ***   

2. spacer 2.19|2028060|35|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.714

ggcgtatatggataaaaataaagtgaatcacgaac	CRISPR spacer
cgcgtatatggataaagataaagttaaaactaaga	Protospacer
 ***************.******* **   ..*. 

3. spacer 3.21|2039656|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012104 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence) position: , mismatch: 10, identity: 0.73

gaagtcatataagattgattttttcaagatgttgctt	CRISPR spacer
ggggtcatttaagattggttttttcaagaggaaatgt	Protospacer
*..***** ********.*********** *  .. *

4. spacer 3.28|2040121|36|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039900 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877b, complete sequence) position: , mismatch: 10, identity: 0.722

gcgaatttcatttcaattcctcctccctaggtctcc	CRISPR spacer
gtatttttcatttcagttcctcctcccaaggcccgg	Protospacer
*..  **********.*********** ***.*.  

5. spacer 3.28|2040121|36|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039891 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499b, complete sequence) position: , mismatch: 10, identity: 0.722

gcgaatttcatttcaattcctcctccctaggtctcc	CRISPR spacer
gtatttttcatttcagttcctcctcccaaggcccgg	Protospacer
*..  **********.*********** ***.*.  

6. spacer 3.6|2038659|35|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to MT498055 (Arthrobacter phage Bumble, complete genome) position: , mismatch: 11, identity: 0.686

ctatatcttccccgtcgggaccctccccgactttc	CRISPR spacer
cggggatctccccgacgggaccctcgccgacttcg	Protospacer
* . . ..****** ********** *******. 

7. spacer 3.24|2039854|37|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.703

cagttatcgcggcgttgtgggcgtggtggaaaaacaa	CRISPR spacer
ttaggatcgcggcgttgcgggcgtgatggaacggcag	Protospacer
. .  ************.*******.***** ..**.

8. spacer 3.30|2040256|34|NZ_CP019699|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024309 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence) position: , mismatch: 11, identity: 0.676

agacgacgggggcctttccaaagccaatacaaag	CRISPR spacer
cctgaaccggggcctttccgaagccaataaacct	Protospacer
    .** ***********.********* *   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 145383 : 176466 30 Stenotrophomonas_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 290167 : 298165 7 Bacillus_virus(42.86%) NA NA
DBSCAN-SWA_3 1060970 : 1086435 33 Bacillus_phage(39.13%) terminase,capsid,portal,tail,holin NA
DBSCAN-SWA_4 1534803 : 1561732 26 Streptococcus_phage(33.33%) transposase,integrase attL 1532478:1532492|attR 1566432:1566446
DBSCAN-SWA_5 1581969 : 1650603 57 Bacillus_phage(42.86%) transposase,coat NA
DBSCAN-SWA_6 2313710 : 2370449 56 Bacillus_phage(37.5%) transposase,coat,protease NA
DBSCAN-SWA_7 3113676 : 3217213 78 Paenibacillus_phage(25.0%) transposase,integrase,protease attL 3158239:3158256|attR 3188445:3188462
DBSCAN-SWA_8 3261152 : 3269115 10 Listeria_phage(33.33%) transposase,integrase attL 3259482:3259495|attR 3271066:3271079
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage