CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009259	Helicobacter pylori SS1 chromosome, complete genome	1 crisprs	c2c9_V-U4,DEDDh	3	0	0	0
NZ_CP009260	Helicobacter pylori SS1 plasmid pHPLYSS1, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. NZ_CP009259

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009259_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009259_1

1087354-1087747

Orphan

Consensus_repeat	Method
TTTAGCTTCTTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCACAT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP009259_1

>merge|NZ_CP009259|1|1087354-1087747|PILER-CR
TTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGGGTGAGTAATTTCTCACATTCTTTTCTTTCAGCTTCGTTTTTGGCTTGAGATACGCAATCCAAATAAGCTTTAACGCTTTTTTTAGCTTCTTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCAGGCTCTCCTTTCAGTTTCATTTCTAGCTTGGGAGAGACAGTCTTTATAAGCTTTGACGCTCTCTTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGGGTGAGTAATTTCTCACATTCTTTTCTTTCAGCTTCGTTTTTGGCTTGAGATACGCAATCCAAATAAGCTTTAACGCTTTTTTTAGCTTCTTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCAT

>NZ_CP009259|1|1|1087354-1087747|PILER-CR
TTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGGGTGAGTAATTTCTCACAT	TCTTTTCTTTCAGCTTCGTTTTTGGCTTGAGATACGCAATCCAAATAAGCTTTAACGCTTTT
TTTAGCTTCTTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCAG	GCTCTCCTTTCAGTTTCATTTCTAGCTTGGGAGAGACAGTCTTTATAAGCTTTGACGCTCTC
TTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGGGTGAGTAATTTCTCACAT	TCTTTTCTTTCAGCTTCGTTTTTGGCTTGAGATACGCAATCCAAATAAGCTTTAACGCTTTT
TTTAGCTTCTTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009259.1\|WP_000133865.1\|1080893_1081886_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11	unknown	unknown	gnl\|CDD\|274301
NZ_CP009259.1\|WP_077232083.1\|1078638_1080885_-\|VirD4-family-type-IV-secretion-system-ATPase-Cag5	unknown	unknown	gnl\|CDD\|226036
NZ_CP009259.1\|WP_077232079.1\|1090907_1092515_-\|cag-pathogenicity-island-VirB6-family-T4SS-protein-CagW	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232085.1\|1076200_1077646_+\|type-IV-secretion-system-apparatus-protein-Cag3	unknown	unknown	gnl\|CDD\|273066
NZ_CP009259.1\|WP_077232073.1\|1097217_1097571_-\|cag-pathogenicity-island-protein-CagP	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232642.1\|1075394_1075742_+\|cag-pathogenicity-island-protein-Cag1	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232080.1\|1089287_1090856_-\|type-IV-secretion-system-apparatus-protein-CagX	unknown	unknown	gnl\|CDD\|226035
NZ_CP009259.1\|WP_077232087.1\|1074279_1075134_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP009259.1\|WP_000879925.1\|1097995_1099126_+\|type-IV-secretion-system-apparatus-protein-CagM	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232088.1\|1072688_1074134_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NZ_CP009259.1\|WP_077232078.1\|1093658_1094315_+\|cag-pathogenicity-island-translocation-protein-CagU	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232082.1\|1081890_1082490_-\|cag-pathogenicity-island-translocation-protein-CagZ	unknown	unknown	gnl\|CDD\|72471
NZ_CP009259.1\|WP_077232075.1\|1096410_1096791_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagQ	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232084.1\|1077655_1078165_+\|VirB1-family-T4SS-lytic-transglycosylase-Cag4	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232086.1\|1075849_1076185_+\|cag-pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|235516
NZ_CP009259.1\|WP_077232089.1\|1072246_1072456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009259.1\|WP_000900784.1\|1092519_1093278_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV	unknown	unknown	gnl\|CDD\|226259
NZ_CP009259.1\|WP_077232072.1\|1099140_1100061_+\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NZ_CP009259.1\|WP_077232077.1\|1094350_1095193_+\|type-IV-secretion-system-apparatus-protein-CagT	unknown	unknown	gnl\|CDD\|372486
NZ_CP009259.1\|WP_077232076.1\|1095384_1095984_-\|cag-pathogenicity-island-protein-CagS	unknown	unknown	gnl\|CDD\|374741

Protein	Function_ID	Function_description	E-value
NZ_CP009259.1\|WP_000133865.1\|1080893_1081886_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	1.57618e-142
NZ_CP009259.1\|WP_077232082.1\|1081890_1082490_-\|cag-pathogenicity-island-translocation-protein-CagZ	gnl\|CDD\|72471	pfam09053, CagZ, CagZ. CagZ is a 23 kDa protein consisting of a single compact L-shaped domain, composed of seven alpha-helices that run antiparallel to each other. 70% of the residues are in alpha-helix conformation and no beta-sheet is present. CagZ is essential for the translocation of the pathogenic protein CagA into host cells.	1.0011e-122
NZ_CP009259.1\|WP_077232083.1\|1078638_1080885_-\|VirD4-family-type-IV-secretion-system-ATPase-Cag5	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	0
NZ_CP009259.1\|WP_077232085.1\|1076200_1077646_+\|type-IV-secretion-system-apparatus-protein-Cag3	gnl\|CDD\|273066	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. [Protein synthesis, tRNA aminoacylation].	0.00241741
NZ_CP009259.1\|WP_077232086.1\|1075849_1076185_+\|cag-pathogenicity-island-protein	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0.00822157
NZ_CP009259.1\|WP_077232080.1\|1089287_1090856_-\|type-IV-secretion-system-apparatus-protein-CagX	gnl\|CDD\|226035	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion].	1.02725e-62
NZ_CP009259.1\|WP_000900784.1\|1092519_1093278_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	1.39264e-71
NZ_CP009259.1\|WP_077232087.1\|1074279_1075134_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.94024e-24
NZ_CP009259.1\|WP_077232088.1\|1072688_1074134_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NZ_CP009259.1\|WP_077232077.1\|1094350_1095193_+\|type-IV-secretion-system-apparatus-protein-CagT	gnl\|CDD\|372486	pfam13117, Cag12, Cag pathogenicity island protein Cag12. This is a Proteobacterial family of Cag pathogenicity island proteins.	5.73654e-28
NZ_CP009259.1\|WP_077232076.1\|1095384_1095984_-\|cag-pathogenicity-island-protein-CagS	gnl\|CDD\|374741	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori. CagS is a family of proteins from the pathogenicity island of Helicobacter pylori. The gene lies just downstream of the cluster whose protein-products resemble those of the Vibrio proteins that form the structural core of T4SS. The exact function of CagS is not known.	2.0243e-113

>NZ_CP009259.1|WP_077232082.1|1081890_1082490_-|cag-pathogenicity-island-translocation-protein-CagZ
MELGFNETERQKILDSNKSLMGNANEVRDKFIQNYAASLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGKKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE
>NZ_CP009259.1|WP_000133865.1|1080893_1081886_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGDKVVWVLKNNGEWQPFDVRNKKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR
>NZ_CP009259.1|WP_077232083.1|1078638_1080885_-|VirD4-family-type-IV-secretion-system-ATPase-Cag5
MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKAFKDKANQPQKKKNFKEIIIEGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAIQDFPAYYFKALTFSSLKIYGFNISLVVYSSILCSYTFITFFVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPTRSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGAKETYSSVQGVYTSAFAPYNNAMIRNFTSANDFDFRRLRIDEVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQATFYDDLQAAKTRGELSYDKSLVPVGSSEL
>NZ_CP009259.1|WP_077232084.1|1077655_1078165_+|VirB1-family-T4SS-lytic-transglycosylase-Cag4
MFEKWIGLTLLLNSLAYPCQKVAISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHITLNTAKKFYPTYSKTLLKYKLLNDVGFAIQLAKQILKENFDYYHQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYVKKFRCIYSQVRYNE
>NZ_CP009259.1|WP_077232085.1|1076200_1077646_+|type-IV-secretion-system-apparatus-protein-Cag3
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYASVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINENMPYAQATFLRVPKRSDPNVHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTDPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNAKKPRVVEVPIPPQTSDSDETMRVIKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKSPLNPNDIKNLEKEIKDYYVKSNGLCYANGISLYVKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDSK
>NZ_CP009259.1|WP_077232086.1|1075849_1076185_+|cag-pathogenicity-island-protein
MIQRELNSVSFYGCSNYVNKGGCKGVLREINGSMKMVCLASVKANIKENSFFLGCKNYLKYKWTASVDSQDPKYPKCNGLMKRKKNFKNNEFFTAASLTLKCNGILSLYQF
>NZ_CP009259.1|WP_077232642.1|1075394_1075742_+|cag-pathogenicity-island-protein-Cag1
MADTINTTEATHETKKPNAFVNFFKNSLTDKRYDALGLIGAGVLCCVLSGAMGIVGIIFVAMGIFLSFSNINLVKLVEKLSKKQSKAATTANNETQKSQATSVTNEPTEAKEIKD
>NZ_CP009259.1|WP_077232087.1|1074279_1075134_-|sel1-repeat-family-protein
MFKDFYRTTLSFLKPLLLLLGLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYYFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAQNAIKGYGSGLLGGALILGRMQAQGLGMKKDLKQALKTYRHVVRMFSNKSTNYFANNFRLPNLAFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNIILLKQQMGEILYRIGIAYKEGLGTRKKKNRAKKFLQKSAEFGYEKAMEAL
>NZ_CP009259.1|WP_077232088.1|1072688_1074134_+|type-I-glutamate--ammonia-ligase
MIVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASCFKGWQGIEHSDMILTPDLVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAESEFFIFDSIKIKDASNSQYYEVDSEEGEWNRDKSFENGVNFGHRPGKQGGYLPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVEAADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSKLALHFLGGVLRHARGLAAFTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFAAILMAGMDGVKNKMDPGEAMDINLFKLTLDEIREKGIKQMPHTLRRSLEEMLADKQYLKEGQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYSC
>NZ_CP009259.1|WP_077232089.1|1072246_1072456_-|hypothetical-protein
MKKNKDNFTVSDGVYYDRYGNPLKGGAIQVCRAKHLNGGLRQTLDQNEELKEALFYSLSLLSTMGIRFQ
>NZ_CP009259.1|WP_077232080.1|1089287_1090856_-|type-IV-secretion-system-apparatus-protein-CagX
MGQAFFKKIVNCFCLGYLFLSSVIEAAALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNISEFIKQQRENELDQIERLEDMQEQAQANALKQIEELNKKQAEETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK
>NZ_CP009259.1|WP_077232079.1|1090907_1092515_-|cag-pathogenicity-island-VirB6-family-T4SS-protein-CagW
MFNIKRTFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIEALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSVLDNLSNKIQNFTKGGVEDNVKGNILLQIIGSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPDIIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGVQINIGFEYMRFIGGTLFKMAMVSFIAYAGFGYLYKISYSIYFGLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAGAFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIASLITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALIVGRVGGSMFKG
>NZ_CP009259.1|WP_000900784.1|1092519_1093278_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKIKEVESKNKALNK
>NZ_CP009259.1|WP_077232078.1|1093658_1094315_+|cag-pathogenicity-island-translocation-protein-CagU
MNDTTEHHGPNPLNASPPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAKQRIMEAYAHSFLGYIGGLEHLLGLCMGGIFVLFAIYFVFLRTSKNVDLVESLKIKLKLQYFYYAFGAGAVLFFGLETIRSIYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQGGAE
>NZ_CP009259.1|WP_077232077.1|1094350_1095193_+|type-IV-secretion-system-apparatus-protein-CagT
MKLRASVLIGATILCLTLSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQVVLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNSKEKPQTFDVLQGSQPMLGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSEIFKNGNLNMQTKEEEVREKLQEERENEYLRNQIRSLLSGK
>NZ_CP009259.1|WP_077232076.1|1095384_1095984_-|cag-pathogenicity-island-protein-CagS
MSNNMRKLFSMIANSKDKKERLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKGVQNA
>NZ_CP009259.1|WP_077232075.1|1096410_1096791_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagQ
MLPTKTRIRDPNKQELTQPKIKGLSMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEALGKKFNLPMDNIKNFMAEVLKNGFDSIKNMGSALVGNGFGSSKSDKTTNKMSVSQVRL
>NZ_CP009259.1|WP_077232073.1|1097217_1097571_-|cag-pathogenicity-island-protein-CagP
MKRPISKLSKLKQSFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIALFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLLLVSLSIISKYYLLSHAKFTMKLIILMTQWQNWFL
>NZ_CP009259.1|WP_000879925.1|1097995_1099126_+|type-IV-secretion-system-apparatus-protein-CagM
MLAKIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQKIKELVDYRAKVLLDLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTQEDKERLSYYYPQVKTSSIFKKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDSKAKDIAQKATNTLIFNSERLAFSMAIDKINEKYLKGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQSKKSILKKTNEYNIFVDSDPMMHDKTTMQKEHYKIFNFFKTVVSAYRNNVAKNNPFE
>NZ_CP009259.1|WP_077232072.1|1099140_1100061_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTKEEKEFATNALREKLRNDRARAEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANSLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVKPAAPLVPDEWRTPEIEIIINECIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLNGLKFALNNSNNRTFLIASCAICEKRKKEMEQENNYQDTTNASEFGTTDTKENEAKDATFSNNRSKSELPNSVIDQIEQSIAHGKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009259_1	1.1\|1087406\|62\|NZ_CP009259\|PILER-CR	1087406-1087467	62	NZ_CP009259.1	1085303-1085364	2	0.968
NZ_CP009259_1	1.1\|1087406\|62\|NZ_CP009259\|PILER-CR	1087406-1087467	62	NZ_CP009259.1	1085852-1085913	2	0.968
NZ_CP009259_1	1.1\|1087406\|62\|NZ_CP009259\|PILER-CR	1087406-1087467	62	NZ_CP009259.1	1086080-1086141	2	0.968
NZ_CP009259_1	1.1\|1087406\|62\|NZ_CP009259\|PILER-CR	1087406-1087467	62	NZ_CP009259.1	1086629-1086690	2	0.968
NZ_CP009259_1	1.1\|1087406\|62\|NZ_CP009259\|PILER-CR	1087406-1087467	62	NZ_CP009259.1	1086857-1086918	2	0.968
NZ_CP009259_1	1.2\|1087520\|62\|NZ_CP009259\|PILER-CR	1087520-1087581	62	NZ_CP009259.1	1085189-1085250	2	0.968
NZ_CP009259_1	1.2\|1087520\|62\|NZ_CP009259\|PILER-CR	1087520-1087581	62	NZ_CP009259.1	1085738-1085799	2	0.968
NZ_CP009259_1	1.2\|1087520\|62\|NZ_CP009259\|PILER-CR	1087520-1087581	62	NZ_CP009259.1	1085966-1086027	2	0.968
NZ_CP009259_1	1.2\|1087520\|62\|NZ_CP009259\|PILER-CR	1087520-1087581	62	NZ_CP009259.1	1086743-1086804	2	0.968
NZ_CP009259_1	1.2\|1087520\|62\|NZ_CP009259\|PILER-CR	1087520-1087581	62	NZ_CP009259.1	1087292-1087353	2	0.968
NZ_CP009259_1	1.3\|1087634\|62\|NZ_CP009259\|PILER-CR	1087634-1087695	62	NZ_CP009259.1	1085303-1085364	2	0.968
NZ_CP009259_1	1.3\|1087634\|62\|NZ_CP009259\|PILER-CR	1087634-1087695	62	NZ_CP009259.1	1085852-1085913	2	0.968
NZ_CP009259_1	1.3\|1087634\|62\|NZ_CP009259\|PILER-CR	1087634-1087695	62	NZ_CP009259.1	1086080-1086141	2	0.968
NZ_CP009259_1	1.3\|1087634\|62\|NZ_CP009259\|PILER-CR	1087634-1087695	62	NZ_CP009259.1	1086629-1086690	2	0.968
NZ_CP009259_1	1.3\|1087634\|62\|NZ_CP009259\|PILER-CR	1087634-1087695	62	NZ_CP009259.1	1086857-1086918	2	0.968

1. spacer 1.1|1087406|62|NZ_CP009259|PILER-CR matches to position: 1085303-1085364, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

2. spacer 1.1|1087406|62|NZ_CP009259|PILER-CR matches to position: 1085852-1085913, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

3. spacer 1.1|1087406|62|NZ_CP009259|PILER-CR matches to position: 1086080-1086141, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

4. spacer 1.1|1087406|62|NZ_CP009259|PILER-CR matches to position: 1086629-1086690, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

5. spacer 1.1|1087406|62|NZ_CP009259|PILER-CR matches to position: 1086857-1086918, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

6. spacer 1.2|1087520|62|NZ_CP009259|PILER-CR matches to position: 1085189-1085250, mismatch: 2, identity: 0.968

gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	CRISPR spacer
gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	Protospacer
************************************************************

7. spacer 1.2|1087520|62|NZ_CP009259|PILER-CR matches to position: 1085738-1085799, mismatch: 2, identity: 0.968

gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	CRISPR spacer
gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	Protospacer
************************************************************

8. spacer 1.2|1087520|62|NZ_CP009259|PILER-CR matches to position: 1085966-1086027, mismatch: 2, identity: 0.968

gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	CRISPR spacer
gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	Protospacer
************************************************************

9. spacer 1.2|1087520|62|NZ_CP009259|PILER-CR matches to position: 1086743-1086804, mismatch: 2, identity: 0.968

gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	CRISPR spacer
gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	Protospacer
************************************************************

10. spacer 1.2|1087520|62|NZ_CP009259|PILER-CR matches to position: 1087292-1087353, mismatch: 2, identity: 0.968

gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	CRISPR spacer
gctctcctttcagtttcatttctagcttgggagagacagtctttataagctttgacgctc	Protospacer
************************************************************

11. spacer 1.3|1087634|62|NZ_CP009259|PILER-CR matches to position: 1085303-1085364, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

12. spacer 1.3|1087634|62|NZ_CP009259|PILER-CR matches to position: 1085852-1085913, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

13. spacer 1.3|1087634|62|NZ_CP009259|PILER-CR matches to position: 1086080-1086141, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

14. spacer 1.3|1087634|62|NZ_CP009259|PILER-CR matches to position: 1086629-1086690, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

15. spacer 1.3|1087634|62|NZ_CP009259|PILER-CR matches to position: 1086857-1086918, mismatch: 2, identity: 0.968

tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	CRISPR spacer
tcttttctttcagcttcgtttttggcttgagatacgcaatccaaataagctttaacgctt	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage