CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013184	Pseudomonas protegens strain H78 chromosome, complete genome	7 crisprs	DinG,csa3,WYL,cas3,PD-DExK,DEDDh,RT	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013184_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_1

1722454-1722658

Orphan

Consensus_repeat	Method
GGTGGCCTGGTGGGCTACAACCAGAACAGCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013184_1

>merge|NZ_CP013184|1|1722454-1722658|PILER-CR
GGTGGCCTGGTGGGTTACAACCAGGGTGGCAGGATCGAACGCGCCAGCTCCTCGGTCGGCGTCTGGGGGTACACCGCCAGCCGTATCGGCGGCCTGGTGGGCTTCAACAACAACGGCGCTATCGTCTACTCCAGCGCCAGTGGCGCGGTGGTCGGGGCGGGCTCCGTGGCTGCCGGTGGCCTGGTGGGCTGGAACCAGAACAGCG

>NZ_CP013184|1|1|1722454-1722658|PILER-CR
GGTGGCCTGGTGGGTTACAACCAGGGTGGCA	GGATCGAACGCGCCAGCTCCTCGGTCGGCGTCTGGGGGTACACCGCCAGCCGTATCGGCGGCC
TGGTGGGCTTCAACAACAACGGCGCTATCGT	CTACTCCAGCGCCAGTGGCGCGGTGGTCGGGGCGGGCTCCGTGGCTGCCGGTGGCC
TGGTGGGCTGGAACCAGAACAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_077933538.1\|1731512_1732868_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP013184.1\|WP_077933534.1\|1718487_1720239_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013184.1\|WP_077933530.1\|1712596_1712842_+\|DUF2274-domain-containing-protein	unknown	unknown	gnl\|CDD\|370791
NZ_CP013184.1\|WP_015634532.1\|1728988_1729438_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP013184.1\|WP_011059800.1\|1713659_1714226_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP013184.1\|WP_077933540.1\|1733924_1734176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_077933532.1\|1714253_1714997_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP013184.1\|WP_033470270.1\|1709620_1710325_+\|conjugal-transfer-protein-TrbF	unknown	unknown	gnl\|CDD\|184356
NZ_CP013184.1\|WP_077933529.1\|1711325_1712600_+\|TrbI/VirB10-family-protein	unknown	unknown	gnl\|CDD\|225499
NZ_CP013184.1\|WP_077933539.1\|1732899_1733868_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
NZ_CP013184.1\|WP_015634531.1\|1728041_1728830_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP013184.1\|WP_077933528.1\|1710321_1711323_+\|P-type-conjugative-transfer-protein-TrbG	unknown	unknown	gnl\|CDD\|274292
NZ_CP013184.1\|WP_149027455.1\|1715172_1717755_+\|fimbria/pilus-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP013184.1\|WP_077933542.1\|1735325_1736513_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|132248
NZ_CP013184.1\|WP_077933533.1\|1717754_1718513_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP013184.1\|WP_077933527.1\|1708237_1709608_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|237537
NZ_CP013184.1\|WP_053149572.1\|1724856_1727844_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NZ_CP013184.1\|WP_077933537.1\|1729760_1731464_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|236235
NZ_CP013184.1\|WP_077933541.1\|1734181_1735315_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|132247
NZ_CP013184.1\|WP_077933536.1\|1723690_1724713_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_077933538.1\|1731512_1732868_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41922e-91
NZ_CP013184.1\|WP_077933534.1\|1718487_1720239_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.26552e-118
NZ_CP013184.1\|WP_077933530.1\|1712596_1712842_+\|DUF2274-domain-containing-protein	gnl\|CDD\|370791	pfam10038, DUF2274, Protein of unknown function (DUF2274). Members of this family of hypothetical bacterial proteins have no known function.	1.56749e-29
NZ_CP013184.1\|WP_015634532.1\|1728988_1729438_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.02767e-24
NZ_CP013184.1\|WP_011059800.1\|1713659_1714226_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.52745e-22
NZ_CP013184.1\|WP_077933532.1\|1714253_1714997_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	1.83381e-73
NZ_CP013184.1\|WP_033470270.1\|1709620_1710325_+\|conjugal-transfer-protein-TrbF	gnl\|CDD\|184356	PRK13872, PRK13872, conjugal transfer protein TrbF; Provisional.	6.76997e-157
NZ_CP013184.1\|WP_077933529.1\|1711325_1712600_+\|TrbI/VirB10-family-protein	gnl\|CDD\|225499	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion].	1.10051e-89
NZ_CP013184.1\|WP_077933539.1\|1732899_1733868_+\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	1.89546e-94
NZ_CP013184.1\|WP_015634531.1\|1728041_1728830_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.59043e-51
NZ_CP013184.1\|WP_077933528.1\|1710321_1711323_+\|P-type-conjugative-transfer-protein-TrbG	gnl\|CDD\|274292	TIGR02775, probable_conjugal_transfer_protein_TrbG, P-type conjugative transfer protein TrbG. The TrbG protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbG is a homolog of the F-type TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the vir system VirB9 protein. [Cellular processes, Conjugation].	7.21322e-110
NZ_CP013184.1\|WP_149027455.1\|1715172_1717755_+\|fimbria/pilus-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP013184.1\|WP_077933542.1\|1735325_1736513_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	2.14144e-152
NZ_CP013184.1\|WP_077933533.1\|1717754_1718513_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	1.62421e-71
NZ_CP013184.1\|WP_077933527.1\|1708237_1709608_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0
NZ_CP013184.1\|WP_053149572.1\|1724856_1727844_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	2.54144e-22
NZ_CP013184.1\|WP_077933537.1\|1729760_1731464_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|236235	PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP013184.1\|WP_077933541.1\|1734181_1735315_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|132247	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	1.15547e-100
NZ_CP013184.1\|WP_077933536.1\|1723690_1724713_+\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.20261e-09

>NZ_CP013184.1|WP_077933534.1|1718487_1720239_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MEVRGYKTEVALGKSSNSLLAGGLERRWQRLSGGCLGLLLMLPAVAAAAVYVPNAGQAMRDIQATQPALPEPPAPELDLPAKPPSAPAQAPDTSGIRLQVNDFVIVGNQVFSNEMLQALLADLKGQELDLNQLRAAAERLTTYYQNQGYMLARAFLPAQDIEDGVVRIEVMEGRYGRIQVNNQSRALNSVITGPLSSLHSDTAVRSEDLERSLLLLSDLPGVRVKGTLSAGEQRGTTDLLVNAQPGPWASGTLEADNFGGYYTGEYRLGGSLNLNNPLRLGDQFNLRLLGSDEDQRYYRAAYKLPLGPWSTSVGVAYSRMNYELSRDFEVLEAHGQASIGSVFITQPLIRSRTFDLSAQLQYEDKRLRDDIDLFEVSSQKHVELWSLSLNGNSQDSLLGGGQNFFYLTYGSGRLSIDDPMDQWRDHFTAGTNGGFQKLNLNAARLQYLSPRFQLYGQFNGQWSSTNLDSSEKFGIGGPFDVRAYPQGSGSGDQGWQASLELRFLLAPRWQLKAFVDHGAVQVNKSPWIHDENRRQLSGAGVGASWSGPSQQISVTSAWALDNNQEGSGPERTPRIWASATQYF
>NZ_CP013184.1|WP_077933533.1|1717754_1718513_+|fimbria/pilus-periplasmic-chaperone
MDHQGGYGRLCSLRGCRWLLGLLALSSGWAQADLSIVGTRFIYPAGKPAISIRVGNSGRAPILLQAWLDKGDAEVDPSALVVPFVLSPPISRLEPRQNAALVLRYSGEPLPGDRESVFWINFLEVPPLAAAKDDLLRLASRMRMKLLYRPQGLSGKADEAVRQLRWSLVAAGAGGAALLAGNPTPYYVSFAEVALGSGNRSITLQGITVEPFGSARIALPDMQGITPDQAVVHYQVATDSGETLSGSARIQD
>NZ_CP013184.1|WP_149027455.1|1715172_1717755_+|fimbria/pilus-outer-membrane-usher-protein
MSNSMVLVADQDGIAPATAEAADTGSSQDVLFDSQMLFQGKGTPIDTSRFQQLGYVAPGTYLLDVLVSSQWRALQEIQFRASDDPQGSQPCYDRSLLQQLGIDLKKTDASLGTHSSHPLMGDGLFCGDLGSYIPGATTRVKIAEQKIELSVPQLFLQQNLSKTYVDPASWDYGVSAATLNYNTSLFSSQSNGRSQTDGYAGLNLGLNLGDWRLRHSGTATWSPEVGGHYQRGYIYAQTDLPAWHSQLLVGESVTEADLFDSVSFRGVRLASDPRMLPESQRYYAPQIRGTASTNAKVSVYQRGYMIYETSVAPGPFEISDLQAASFGGDLDVTVTEANGQTSRFTVPFATTVQTLRPGTSRYSLTAGKVANPGLGGSEQYVAQGTLHYGLDNQLTGYAGTALTGSYMSALIGSALNTSLGAFGLDLTQARTELPRGGSMQGQSVRLSYSKNLPNSGTNFSLLAYRYSTSGYLGLQDAISLQDHVNQGESVDSFARVRDRLDININQQLGDGAGQLYATGSSLQYWNRQGQTLNFAMGYSNQWRGNSYSFMAQRMRASSSGSRAGAGADNTFFSFSLSIPLGREGRRGTTINSYASHDKRSGAHYTSGISGVLDKDGDATYALSAAHDQRQGETSTNASLNYFLPEVSLSSSFSQGRDYRQQSLGASGGMVLHSGGLTFAQTLSETTGLVHAPDAKGARVGYADTRVDGSGYAVVSSLSPYQLNTVDIDPTGVADDVELLLSSRHVAPVAGAVVMLSYPTRRARAVLIDSQQPDGQQLPFAAVAVDAQDGAELGAVGQGSRLVLRTEQDQGTIRVEWGQEPDQQCLIDYQLPPRDTASATGYVVLQRPCRAMPAGSVEERP
>NZ_CP013184.1|WP_077933532.1|1714253_1714997_+|fimbria/pilus-periplasmic-chaperone
MTPTARFVHSLVIGVMFLGILSGVAHAGIVLEGTRLVYPAEAREVTLKLSNTGSVALLAQSWIDEGDANKSPEEIKVPFLLAPAVSRVEAGGSAILRVSYSKEPLAKDRESLFWLNVLETPPRRKQDENVLQFAFRTRIKIFFRPDNLIGNAGMAGEKLKWELSRAGASQVPVIKVFNPTPYYVSFGRMEVAVSGRRIDLKPGMVAPFGYESFPWPAGAPSQPTKASIEYEVIDDFGGRGLLKKSLL
>NZ_CP013184.1|WP_011059800.1|1713659_1714226_+|type-1-fimbrial-protein
MKRKTLLSMATSGLMLAALIPSFAQATDGVVKFSGSISDTTCDINGKAPGEGNETNVELGTINPSVFSEIGKTSTLKPFVLQLSGASCTAGKSVSIEFDQLGNVDPASGNLKLIGSKPARGVQIQIYNDHGSTPAKIVLGQAEAAPQVATISTEKTATLKYQAAYVSTEASVGAGSGVSYIRYTLAYQ
>NZ_CP013184.1|WP_077933530.1|1712596_1712842_+|DUF2274-domain-containing-protein
MSTTKKLRLGPLPKTENVKLTFACPASLKADLDRYAALHAQAYGEAVDAEKLIPHMLEAFMAGDRGFRKGTATRSVPSKPT
>NZ_CP013184.1|WP_077933529.1|1711325_1712600_+|TrbI/VirB10-family-protein
MSQDDTPDLDTPQAGKVAPEAVALRAQPRPVTRLNRRTLAILVGGLSVAVLGATIWSLQPQRRGTGEQTELYNVDRVSKSEGLDGLPSDYSKLPPKMPELGPPLPGDLGPAIVNSQQPAVAAYAAPGHDPNDALRKEQEAAAASSVFFRSGGQGQAAVLVAQAAPGVPGGANALAAFDPLAAGPASTAAQPADPTAVQNRQDQKEAFLKGGSTETRNSGNLALPASPYQVMAGTVIAGALVTGIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLVGTDPAGYAGLEDDVDWHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPYQPMFFNRGASQ
>NZ_CP013184.1|WP_077933528.1|1710321_1711323_+|P-type-conjugative-transfer-protein-TrbG
MNLSFRFYALPLMLVALVGCATQGKPPPTISLDEPVQAQPLPEPPAPVEVVTVPEPLALPAQLKPLPEAEGAKPAPEPADEKVRVSRANAEARVAPTREGYINAIQVWPFTDGALYQVYAAVGRVTVVSLQPGEELVTVAAGDTVRWIVGDTSSGSGADLRVNVLVKPIRSGLKTNLVITTSRRTYLLELTSTEKTWMASVSWEYPRDRMLALQRQAQAASVAAPVDSGLSLENLRFRYAISGSNPPWKPLRAFDDGQKVYIQFPAGIAQGELPPLFVIGAEGDGQLVNYRFRSPYYIVDRLFGAAELRLGGDKGDVVRIERNDGAVGAARRN
>NZ_CP013184.1|WP_033470270.1|1709620_1710325_+|conjugal-transfer-protein-TrbF
MRFKKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLVWRSAQSIVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP
>NZ_CP013184.1|WP_077933527.1|1708237_1709608_+|P-type-conjugative-transfer-protein-TrbL
MNDVTIIDQFLNTFATYIDSGFGLLRGEVAFLTATLIVIDMTIAGLYWAMSHATGQGDDVIAKLLRKVLYVGAFAYILNNFNWLASIVFRSFAGLGITATGSAITMENFLQPGRLAKTGIDAGAPILEQIGEMAGFPEVFVNLDPIVVMFLAWLVVVLCFFVLAIQLFITLIEFKLTTLAGFVLVPFALWNKTSFLAEKVLGNVVAAGIKVLVLAVIVGIGSGLFSQFQVHPAEPNIDHALVIMLASLTLLALGIFGPGIATGLVSGAPQLGAGAMAGAAVGAVGTAVAVGAVATGVGGAVAAGARMAPATAKLAGSGARAATSAAGSAKSAFQAGSAAAGGGAKGAMAGLGNVAKTGAQSAGRAAASRASAAGQRMAAPFRAGWNGDAGAAAGQTATSEAPAGAAAAQTTEQPAWAKRLQRRQQLTHAATTTAHTLRGGDGGGSGQGPSLRDSDS
>NZ_CP013184.1|WP_077933536.1|1723690_1724713_+|fimbrial-protein
MNGYARDCNLSSKAGSPWRLVNPLNTNTPVGTVLWERTVTLHTSFNLAISGKPRELVTAGHWSPGTPQTDDAAPTDVAGIGLRLDVAPQGRERIRVTQVTSPIVLEKNDDLIYESGLPAQTMVTQIIQSLILTVPPDQLPTGTLKVTQVTGSSYLQLYAYDLEKNESTLGSQLGKLSPPLTYSCRKSLVMGGLDFNMDIELPKTCVVEAYKEIGVRLGRFSLADFPQVNATSPEVPFSIGLSRCSMQARPRISFIDKSGGSAVKGVLGLIDSTTRGFGIVMTNGLTSERIEYSGQSYEMQRIGDGASIPLRASYIRIGNDQEVHAGGAANGAAEFTFTFP
>NZ_CP013184.1|WP_053149572.1|1724856_1727844_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MNKIYALVWNQAQGCWNVTHEGARRRRAGSGKGLVVAVASLLALTGLPSAFALPTGGEVVSGSADFHTQGQHMSINQQTDKLVTQWKDFNVQNGQSVTFNQPTSTSIALNRVVGVNGSQIHGQINANGRVFLINPNGVVFGQGAQVNVGGLVASTRDISDADFKAGNYKFAGTSAAEVVNQGSITAADGGGVALLGARVTNQGTIKAQNGRVALAAGDGFTVSFDDNQLLDLHVDSAALNALVHNTGTGLLKADGGQVLMTAKSASSMLQTVVNNQGTVEANTLSQKAGRITLDGGDVGVVSVDGSLRASALDGKGDGGVIETRGANTRVQLTTKVDTQARDGQTGTWKIASNEVKVGSFLTAKSNTAHADTLSRNLATTHIELASGKGDVAVENGLFWFSGNQLTLSSAKDIRLDDSLFAGGANARVELNAQGDIKLNRQLTLSGSNSSLGLNHGGNFALGQNGGVTLSGNGARFDANGEAYSVIQNATQLQAIDQDLAGRYVLGNSIDSSARLTSIGGQQTFSGVFEGLGNTLSGLTVNSNGTDGGLFASSSGSIGNLKLASMTINGATSTTGSSAVGGLVGRNSGKIANVSASKLRVNAKGRQDNLVGGLVGSNAGGSIDASSVAGVVLGNSFTSAAGGLVGENRQVAGSGGTVTNSSADVRLTASIASNAEGGVGGLVGVNHQGLIAGSSSSGTVSSGDSYSYKGTNLGGLVGYNQGGRIEGSQSSTAVSGNGASHAGGLVGRNESGRISDSVASGGLLGKNFATAGGLVGLNQDSTLHNVTASGSVNGGSSLHIGGLVGQNIDGHISLAEAFGLVQGASNSNVGGLVGYNVGGLVANSTAWGNVVGKDQSHVGGLIGYNAGDLKSVEARGDASAGAKSAVGGLVGTHGVLKGDSLIDTASAKGNVSGGSYSVVGGLVGQNNARIVNALASGEVSGSRDARLGGLAGVDLGDIRQSASFGNIQVIAPNYASLGYDRPFSQAADFNQGVMGN
>NZ_CP013184.1|WP_015634531.1|1728041_1728830_-|IclR-family-transcriptional-regulator
MQDPNDSPEQAPKDRKFVEALARGLEVLRAFTHGHAVRGNQDIARITGLPKPTVSRLTYTLTQLGYLKYNQDLEKYQLDSAVLALGYAYSASLRVRQLGKPFMDEFSRRTNTTVSLTCRDRLSMIHVDSSRPPEVASLRMEPGLRLPLATSAAGRAYLAATPKIERDHLLGEVAKKLGDEWPALEKSLEDSFREYEEFGFCLSLGEWDRNVNGAGVPLRLADGSIMALTCGAPSFQLSSEKLESSLAHQLVMLARDLESLGV
>NZ_CP013184.1|WP_015634532.1|1728988_1729438_-|PaaI-family-thioesterase
MSAVPEVSMLQGLFSGFAAHLGLNLREYQQAQTVIAVTVQPHHLNQAGNLHGGVIASLADTAMGMSGTWHADPAQWRLALTLSLNINYMAAIPPATEVRAVARLRGGGAKIFMASCDLLDAQDRLLASAEGVFKRGRLRAAATEVVACP
>NZ_CP013184.1|WP_077933537.1|1729760_1731464_+|long-chain-fatty-acid--CoA-ligase
MSTARTQRPHHRVWPKRLPLALSVPATSLWFNLEVAARRYPDKVAYRFFGHTLSFAQLQAEALALAGWLQGEGVEPGDRVALYLQNCPQFIIACYAILRANAVLVPINPMNKVQELSYQLGDAQARVLICAADLAPIAQAANASLEPEQRLHRVLVTRYSDAMPAPADMHPAEVASAEIDAWLRSEPPLPEGYQRWNQALAQARCPGPHTAQADDLALLQYTSGTTGHPKGCMHTHRSLMSNAVSGSWTQSTVESVGLGVVPFFHITGLVCFVLRAVFDATSTVIMPRWDRELAGRLISRYRVTHWTCIPTMVIDLFASPHYQDFELSSLVHINGGGAAMPEAVAQRLRQEFGLTFLEGYGLTETAAASHGNPPERAKLQCLGMPFFGVDSRVVDPRTLEELAPGEVGEIITFGPMLFKGYWRNPEATEAAFIEFEGKRFLRTGDLGHMDEEGYFFLTDRLKRMINSSGFKVWPAEVEALLFKHPAVHEACVIATRDAYRGESVKALVVLRSEARGHTASEEIIAWAREHMAAYKVPRVLEFVDSLPKSGSGKVMWRVLQDREATHS
>NZ_CP013184.1|WP_077933538.1|1731512_1732868_+|MFS-transporter
MTTTTITVQDPHASPEHARQLDTLYARIRWRLLPLLMLCYMVAFLDRVNIGYAQLQMKQTLPFGDAVYGLGAGIFFIGYFIFEVPSNLMLKRSGVRKTLLRIMFCWGLVAAAMMFVSTSMQFYVLRFLLGAFEAGFFPGVILYFTYWFPAPRRGQVIAIFMTAAAVAGLIAGPVSGSILKYLDGAVGLHGWQWMFMIQGLPASVLGVVAFLYLQDSPARARWLSPGEKRLLDADMARDLANARDKSQDSLAQMFRDPRIYLLSTAYFMFLGATYMLVFWMPSLIQGWGSKDLLQVGLITAIPNIVGIVGMVLIGQHSDKHRERRWHFVGCMAIAVFGLAVTTLLNGHLLLSVTALGFAYVGIKAGTPIFFALVSEYLSVAATAGGIAFISSLGNLGPAVTPWLNGVINSHTGGHVSSMYLGIVMYLLAGGLVLVTARIARVPEVAAVVAES
>NZ_CP013184.1|WP_077933539.1|1732899_1733868_+|nitronate-monooxygenase
MSLPKTLTQHLRLPVVAAPLFIISTPELVIAQCKAGIVGSFPALNARPAERLGEWIEQITQALAEHDRLHPQRPAAPFAVNQIVHRSNDRLEQDMAVCVQHKVPIIITSLGARPEINQAVHSYGGIVLHDVINNRFARKAIDKGADGLIAVAAGAGGHAGTQSPFALVQEIRQWFDGPLLLSGAIASGRSILAAQALGADLAYIGSAFIATQEANAVAGYKQMISQSTAEDIVYTNLITGVHGNYLKASLVAAGLDPDDLPSSDPSQMNFGADRHKPKAWKEIWGCGQGIGVVDGVPSAADLVARLGREYQQACQGLRTRLL
>NZ_CP013184.1|WP_077933540.1|1733924_1734176_-|hypothetical-protein
MNLGPGGHLGLSQGQQVSPPSLPGAQRAARRCAQSPLLNPSQAWRRISAAPGKGVAEVDNRYLEVMESLAYRGHALSLIHKIW
>NZ_CP013184.1|WP_077933541.1|1734181_1735315_-|acyl-CoA-dehydrogenase-family-protein
MNFEHSAERRMLGDSLNRFIAQHYNLEKRQQSLQSGQGFNSGIWQQLAEMGVIGALFSEADGGYGGGGFDLALVFEAVGRGLLVEPLLGSAVLAGDAIASAGSETQKIELAQIIDGSLIAALAHDEPDSHYELNRVACRAEPQADGWRLDGTKSLVLHGEQAGLLVVSARTAGAIDDSQGISLFLVPRDTPGLEIRGSATLDGGPVAQVRLNQLLVPGSALLGSLHQGHATLERAIGRGVLALCAEALGAMEVAKVATLDYLRTRQQFGRPIGSFQALQHRMAVLLLEIEQARSAVINAASALEADRLDRERALSAAKVSIGRIGTLVAQECIQLHGGIGMTWELPLAHYAKRLVMIDHQLGDEDHHLQRYIALGKQ
>NZ_CP013184.1|WP_077933542.1|1735325_1736513_-|acyl-CoA-dehydrogenase-family-protein
MDLSFTPQEEAFRNQVQAFLAEHLPSELSDKVANGERLSKADMEHWHSTLNTRGWLANHWPEAFGGPGWSAVEKFIFELECGLANAPRIVPFGVNMLGPVLIKYGTPQQQDYWLPRILDGRHWWCQGYSEPGAGSDLAAVKTTAVRDGDHYVVNGQKTWTTLGQHANMIFCLVRTDREAKPQEGISFLLIDMASPGVEVRPIITLEGDHEINEVFFTDVRVPEANLVGEENKGWTCAKYLLTYERTNIAGVGLSMAALQRLKRVAAQRTRNGRPLLEDPQFAARLARVEIDLENMKTTNLRVIAAVAGGGAPGAESSMLKICGTEIRQELTALLRRAMGPAARVMQDEGDTGAMDLGPAFASSAAAQYFNNRKLSIFGGSNEIQKNIISKMILGL

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Crispr_ID: NZ_CP013184_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_2

2646221-2646382

Orphan

Consensus_repeat	Method
AGGAGCGGGCTTGCCCGCGAAAGCGTCGGGATGGACGCCGCCGGACCAGCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_2

>merge|NZ_CP013184|2|2646221-2646382|CRISPRCasFinder
AGGAGCGGGCTTGCCCGCGAAAGCGTCGGGATGGACGCCGCCGGACCAGCGTCGCCCCCTTCGCCGGCAAGCCGGCTCCTACATCCCCTTCCTGCATTAATCTTCTGTAGGAGCGGGCTTGCCCGCGAAAGCGTCGGGATGGACGCCGCCGGATCAGCGTCG

>NZ_CP013184|2|1|2646221-2646382|CRISPRCasFinder
AGGAGCGGGCTTGCCCGCGAAAGCGTCGGGATGGACGCCGCCGGACCAGCGTCG	CCCCCTTCGCCGGCAAGCCGGCTCCTACATCCCCTTCCTGCATTAATCTTCTGT
AGGAGCGGGCTTGCCCGCGAAAGCGTCGGGATGGACGCCGCCGGATCAGCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_019093528.1\|2653429_2653990_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149
NZ_CP013184.1\|WP_019093533.1\|2645402_2646164_+\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
NZ_CP013184.1\|WP_041117261.1\|2650759_2651476_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223477
NZ_CP013184.1\|WP_011060541.1\|2639126_2640476_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP013184.1\|WP_077933802.1\|2634316_2636242_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013184.1\|WP_077933807.1\|2649091_2650204_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349468
NZ_CP013184.1\|WP_011060550.1\|2648208_2648988_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP013184.1\|WP_011060554.1\|2651489_2652068_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183232
NZ_CP013184.1\|WP_077933808.1\|2653990_2654518_+\|chalcone-isomerase-family-protein	unknown	unknown	gnl\|CDD\|374318
NZ_CP013184.1\|WP_077933803.1\|2637937_2638954_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_CP013184.1\|WP_077933805.1\|2644635_2645211_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP013184.1\|WP_077933806.1\|2646406_2647396_-\|transcriptional-regulator-FtrA	unknown	unknown	gnl\|CDD\|181818
NZ_CP013184.1\|WP_011060545.1\|2643426_2644281_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP013184.1\|WP_053150514.1\|2641427_2642783_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013184.1\|WP_026020012.1\|2650322_2650697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_077933804.1\|2640691_2641444_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP013184.1\|WP_011060539.1\|2636814_2637888_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_CP013184.1\|WP_011060544.1\|2642779_2643424_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NZ_CP013184.1\|WP_041117263.1\|2652222_2653008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_011060549.1\|2647499_2647934_+\|rhodanese	unknown	unknown	gnl\|CDD\|238779

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_019093528.1\|2653429_2653990_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	2.90699e-106
NZ_CP013184.1\|WP_019093533.1\|2645402_2646164_+\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	3.2189e-153
NZ_CP013184.1\|WP_041117261.1\|2650759_2651476_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	8.37759e-40
NZ_CP013184.1\|WP_011060541.1\|2639126_2640476_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.30871e-43
NZ_CP013184.1\|WP_077933802.1\|2634316_2636242_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.74811e-59
NZ_CP013184.1\|WP_077933807.1\|2649091_2650204_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349468	cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO. An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding P. aeruginosa AotO was characterized as part of an operon encoding an arginine and ornithine transport system, however it is not essential for arginine and ornithine uptake.	4.46049e-119
NZ_CP013184.1\|WP_011060550.1\|2648208_2648988_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.13637e-135
NZ_CP013184.1\|WP_011060554.1\|2651489_2652068_-\|hypothetical-protein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	9.71567e-11
NZ_CP013184.1\|WP_077933808.1\|2653990_2654518_+\|chalcone-isomerase-family-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	3.13686e-14
NZ_CP013184.1\|WP_077933803.1\|2637937_2638954_-\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	2.8824e-136
NZ_CP013184.1\|WP_077933805.1\|2644635_2645211_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.82744e-30
NZ_CP013184.1\|WP_077933806.1\|2646406_2647396_-\|transcriptional-regulator-FtrA	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	0
NZ_CP013184.1\|WP_011060545.1\|2643426_2644281_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.83458e-58
NZ_CP013184.1\|WP_053150514.1\|2641427_2642783_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.81921e-101
NZ_CP013184.1\|WP_077933804.1\|2640691_2641444_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	5.85981e-88
NZ_CP013184.1\|WP_011060539.1\|2636814_2637888_-\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	3.59893e-161
NZ_CP013184.1\|WP_011060544.1\|2642779_2643424_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	2.40458e-44
NZ_CP013184.1\|WP_011060549.1\|2647499_2647934_+\|rhodanese	gnl\|CDD\|238779	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.	3.34882e-54

>NZ_CP013184.1|WP_019093533.1|2645402_2646164_+|precorrin-6A-synthase-(deacetylating)
MKTLLVIGIGAGNPDYITIQAIKALNRSDVVFLMDKGPSKDSLIDLRRELCERYLTERPFRYVEAQNPERERGDVDYQASVQTLNRDKQQVFERLINQELADGETGAFLAWGDPALYDSTLRILQQILASGAASFEYEVIPGVTSVQALTARHKVPLNRIGRSVEITTGRRLAAGQAGSADSLVVMLDAEDSYRHLRNQGLDIYWGAYLGTADEILISGPLDQVADEIRRVRLQARQTHGWIMDTYLLRKPQD
>NZ_CP013184.1|WP_077933805.1|2644635_2645211_+|histidine-phosphatase-family-protein
MQATRLTLICHARTAAQKLARFPRDEPLELDWQAQALSRAGDFKRSIRVLCGPELRTRQSAQLFSAEHEVQDALRDCDFGAWQGLRIDELQEREPEALQAWLRDPQLAPPGGESLAQLCQRVAQWLEVMAQRPGHWLAVTHPFVIRAVLVQVLQAPLASFNQIDIEPLSRLDLSHAGRWRLRLPGAPTPSR
>NZ_CP013184.1|WP_011060545.1|2643426_2644281_-|MurR/RpiR-family-transcriptional-regulator
MPSLRDLITDPALDLTPSERKVVRALLDHYPRNGLGPMSRLAEHAGVSDPTIVRLVKKLGFSGYGEFQEALLSDMDDRLRSPSTLLRPRSQVAQGDTWGRYLADSQRVLQDTQALTQPEDIRVLMDWLLDSRHSVYCFGGRFSSFLALYLFNHLRLMRPGCFFLDDNAQLPDRLFDVQRQDLVLLFDYRRYQSQAMRVASAVKARNARVVLFTDIYASPLRELADLVISAPVESLSPFDTLVPALAQVEALVACLTPRSPHLDQRLEGIDALRAEFATHVLEEK
>NZ_CP013184.1|WP_011060544.1|2642779_2643424_-|cysteine-hydrolase
MFSLPHRSPRDLPFVVDHTALLLVDMQRAWLEPQFDPHLQGPEGEAFLKRARERVIPNQQRLLAAVREARQNVLHTIIESLTADGRDRSLDHKLSDMHLPKGSPQAAIIAELEPVENEIVLPKTSSGVFNSTNIDYVLRNLETRHLIIAGIVTDQCVDMAVRDAADRGYLVTLVEDACATYGDTRHQACLNAIKGYCWITDTDTVLGRLREIRG
>NZ_CP013184.1|WP_053150514.1|2641427_2642783_-|glutamine-synthetase
MSRGQGIEALTPVAMTSIVTTDLIGVTRGRSFPSDELERYKVGGCGWVPANSALTPQDLIAEDNPWGAYGDLRLIPDLDSRVSIGAGPDASAAPLDFIHADICETDGTPWAACPRTLLRKEIERYRELGIQITAAFEHEFNLDTGTGQREHLAFSLEAQRQGAAFGGWLLAALRAAGAEPEMFLPEYGKQQYEITCRPTQGLAAADRAVNVREITREIARQLGHRVSFAPKTADDAVCNGVHLHLSLQNLDGEPLLYDPHAVSGDDLSSLGQHWAAGVLRHLPALCAFTAPTPISYQRLQPHHWSASYACLGLRNREASLRICPTLSLGGKPVAPQYNLEFRALDATASPHLAMAVILMAGRLGLEQQRVLNAVTDKAPSDLSAEQRLASGIVPLPGSLPQALECLRGNTELLQFLPQDLLATYFAVKQKEVSLTEHLTAAQLCEHYGHLY
>NZ_CP013184.1|WP_077933804.1|2640691_2641444_-|N-formylglutamate-amidohydrolase
MDTCTKSAELGFYTEPAYRLIREDSEHPLILVCEHASHYIPPALHDLGLDPLAAREHIAWDPGALELAQSLSQALGATLIAANYSRLLIDLNRPRHAPDSIPLQSEIYQVPGNQQLDEATREYRRQQLFTPFHQRLQRIIDRRLAQGREVRVVGIHSFTPVYYGQPRALEIGVLYGSATDYAARILEGLWRLPIRVAGNQPYEIDPLSDMTVPVHGDARGLASVLIEVRNDLLRTPEAVQHWSDTLAPLL
>NZ_CP013184.1|WP_011060541.1|2639126_2640476_-|APC-family-permease
MEIEEFGYKQELKRGLSLRDLVVYGMIFMIPIAPFGVYGYVNQEAPGMVPLAYIIGMVAMVFTALSYGAMARAFPIAGSVYSYAQRGLNPHVGFLAGWLMLLDYLLIPPLLYVYAAMALNHLYPEVPKVGFILAFLVSATFVNLRGITFTARMNILFLLAQLAVLGIFLFYAWNALHGGAGNGQLTLAPLYNPENFHFGMLMQGVSIAVLSFLGFDAISTLAEEVKGDPGRSVGRAALITLVVMGAIFVVQTWIATDLAAGMGFKSADTAFYEIAELAAGSWLATLTGVATALAWGVAVAITSQAAVSRLLFGMARDGKLPKVLAKVHPKHNTPHISIYLVAVLSLLICYLFINSVDTLTSLVNFGALSGFMLLHITVINFYWRRQKSGQVVRHLICPVIGFVIVSAIMYNMGVDAQKLGAIWILAGLVYLFLLNKLGSGAALPDPLKH
>NZ_CP013184.1|WP_077933803.1|2637937_2638954_-|arginine-N-succinyltransferase
MLALRPVALSDLPQLRRLARERLLGVTSLVDDETCLRDKILDSQASFARSEASQGPENYFLVLEDLDSGQLRGCSDILATAGFASPFYNLRNRPFISSSRELNIQHGVPTLSLCHDLSEQTLLRSFHVDPPLGGTPLAQLISRGRLLFIAAHPQRFADSCISEIVGYSDANGESPFWQAVGQHFFDLPYVEAERLCALQGRGFLAELMPQYPLYIPMLAQAAQDCIGQVHPDAREACQILIDEGFAPTQYVDLFDAGPTLQGRSHQLRSIAQSRVATSYPSPQSGQGQQWLLSNERLQGFRAIVAALDTAPGAEIGLDPAMFQALQLAPGEPVRSVAL
>NZ_CP013184.1|WP_011060539.1|2636814_2637888_-|arginine-N-succinyltransferase
MIVRPIRVTDLPAVLSLLEGSCRELNNLSTDPERLAHRVRWAQRAFANQVERADADYLFVMEDDEQQVIGVCGLSGAIGLREPCYNYRVGTTHGSAPVLGIEKHIPTLFLCNEMTGQSLLCSLFLRRDHRQGYTGRLLSTARLLFVAEFPRLFGDKLVAELRGQLDSQGRSPFWDSLGRHFFKMGFQQANRLSSHGSKSFIAELMPRQPLYTCLLSPQAQAAIGQAHASTEQAVSILRDEGFSHQGCIDIFDGGPLIEAEVAKIRSVRESQTLPLLVGTPDAQAPVWLIHNRRLESCRITAAPGRLVSGCLLVDRLTAKRLQLQPGDSVRAVPLLACESRTALHAQRHLAPQSALLL
>NZ_CP013184.1|WP_077933802.1|2634316_2636242_-|TonB-dependent-receptor
MSGALLGCLFSPLLLADDSPLTLDRQFVSAPSVESTTVAEMARYGSKVEIIDRQQIERAGPSSDITRVLQMYVPGLYVAPKNGPFDYGTYSLLGGRNDDTLILLDGVRLNNRLYGGLYLDTLPANAIERIEVLKGGQSLLFGTQAVSGVINIVTRSPQTRDVSGEVNLGLDSFMGRSGDARAEQILSNGLGELGLLAYVSHNVSDGYQPFRNSAYNANTRDKKRSYEVTTFGAKAIQGLGDASRLELFYQYSDANLDFARPVNNRKTTNDRIQQIATATFEQRLDEGFSYFVKGHVNDWDTRYTRIDSLDDASLKVRNHNDYWGFTDWGLQAEGKAELDGGHVLVLGTDNQWFKGQDDVLKIDNKQAQANALYTQLRPVFDTLPDWHPSLGVRHEKISGGESATVGMLTSLYDLSPHWQLRGQYGSAFKLPNAEQLYANEDYEKGNPDLKPEKSLNAELGLDYKGSLLAGEFNTSVSAFHRKIDDLITLDANDVWSNGQGRIKVRGIELDGRWQFSPQWTLQADMTRNLVESRNGVTLSNIPGFFARSRLGFEAPDRMWGVGGAVRYIGQIDSPKNVDYGHYSVVDADAYRYLDTAQQHRLSLLVENLFDRDYSTSMTSTSPSVDNLGRPFTTEVRYTYRF
>NZ_CP013184.1|WP_077933806.1|2646406_2647396_-|transcriptional-regulator-FtrA
MHNPPGLVAILAYDGLCTFEFGIAVEIFGLARPEFDFPWYRQTIAAVDPGPMRALGGIQVLADGGLELLEQARTIIIPGWRSREQAPPPKLLEALRQAHQRGARLLSICSGVFVLAATGLLDGCSATTHWRYARELAEGFPNIRVDPDVLYVDAGQLITSAGSAAGIDACLHLVARDFGTQVANSVARRLVMSPQRTGGQAQFIPAPVSRTPRSDLSRVMQWARERLHQPLSVSELAARALMSERTFLRRFHDATGASPKAWLQHERLARARELLESGSESTESIALRCGYRSVESFRVAFRGLVGVPPSVYRERFGRGLESTTPPRPS
>NZ_CP013184.1|WP_011060549.1|2647499_2647934_+|rhodanese
MTSLVRSTAAAPSAIALMHFCNRLTFETDCSDVHSSQEAGEVDFVLVDVRGPEAFARGHVPGAINLPGRLLTAEHLAGYPRDTLFVVYCAGPHCNGANKAAVKLAALEYSVKEMIGGVTGWLDEGFQLSTGQPRREGADLSCAC
>NZ_CP013184.1|WP_011060550.1|2648208_2648988_+|ABC-transporter-substrate-binding-protein
MNKFALFGALALSLFSFTASADEAKPIRIGIEAGYPPFSMKTPDGKLTGFDVDLGNALCEQMQAKCTWVEQEFDGLIPALKVKKIDAILSSMTITDDRKKNVDFTIKYYHTPARFVMKAGTSIKDPLTELKGKKVGVLRASTHDRFATEVLVPAGIDLVRYGSQQEANLDMVSGRVDALLADSVNLDDGFLKTDAGKGFAFVGPEYNDPKYFGGGAGIAVRKGDQELAGKFNKAITEIRANGKYKQVQDKYFDFDVYGE
>NZ_CP013184.1|WP_077933807.1|2649091_2650204_+|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MQRIDHSLPWGHLGTQRQLSVFRFGSGPRKVYIQASLHADELPGMRTAWELKQRLAQLENQGRLQAVIELVPVANPIGLDQQVQGSHLGRFELGSGKNFNRAFVELSGPVGDLIGKQLGDDATANIALIRRAMVQVLDELPAADSQLQALHRLLLRHACDADITLDLHCDFEAAIHLYALPQHWPRWQSLAARLKAGVALLCEDSGGSSFDESCSAPWLRLARDFPRAAIPPANLAATLELGSMGDTRVQQARANCEAILGFLAEQGLISGEWPAAAQQCCEGMPFEGTQYLFAPHHGVVSFLRDAGEWVERGDALFEVVDPLSDRVSTVCAGTSGVLFALDRGRYTQPGIWLAKVAGREAIREGKLIND
>NZ_CP013184.1|WP_026020012.1|2650322_2650697_+|hypothetical-protein
MPRVSLCIRLLFALCLLAATFNHLRAAFEHGLLWDYGYGAATPLASRAFWGSLTLFDPLAALLLLVRPRWGLLLTLAIILLDVLHNSLYVAAHGQWLETFYLSQVGFALAVLLCLPLAWRGLGR
>NZ_CP013184.1|WP_041117261.1|2650759_2651476_+|alpha/beta-fold-hydrolase
MIRYLALLALLAAPWVQAADALHDDLPLKYLEQAPAEPRNQPLVIFLHGYGSNEADLFGLRQRLPASYTYVSVRAPQTLEEGSYQWFHRKGQGPYDGVTSELASGVELIGQFVRAALAKYQTQPDKVVLVGFSQGAVMAYEVGLRHPQSVRGIAALSGKILPVLAAQVKNNPSLQRLGIFIGHGTLDQRLPYSDAVDAQRLLQGLSLQPQFHAYPGLGHSISEAEIDDLKGWLQGLNP
>NZ_CP013184.1|WP_011060554.1|2651489_2652068_-|hypothetical-protein
MSSFARKALVLVFAAVAGLGALNAVAASKSAARQASGEKVAVLDGKLAFTLPKGFSASVLPAGSEANGTEGASGTLYSNATTRTVVIAAQNTIPHGAKVQDNDAAFLDDAVSGFLAQQAAALPDFSKQSEKNMTLKGLGVRQIDSTATMGGGLTLNSTLIAGSGTRMAVIQIISRATDKAGHTALMKQILGQ
>NZ_CP013184.1|WP_041117263.1|2652222_2653008_-|hypothetical-protein
MLLLKLLTVPGFLWLISLASKRWGPNVAGWLAGFPVVVGPILLFLALEQGQVFATHAAVAALSAVFAMIAFSVAYTHAAQRFSWPGALAIATLVWALLATVIAQVPPSLGFSSLCAASALLLAPRLFPPVGELPASPGPRSDKLPYRMLAGALLTLAVTLLASTVGERWSGMLAVFPVLGSVLAVFSHQSRGVAFTTVLLRSLTTGLYAFAAFCLALALALPPLGMLAFAVALAASMLVLGLSKRLLRATVQEPAGRRRGS
>NZ_CP013184.1|WP_019093528.1|2653429_2653990_+|GTP-cyclohydrolase-I-FolE
MHDPLSQHFHGILQGLGEDPTREGLRDTPQRASKALRYLCHGYETSLEELVNGALFSSTSDEMVMVQNIELYSLCEHHLLPFIGQAHVAYIPTGKVLGLSKVARIVDMYARRLQIQETLTRQIAEAIQEVTRAAGVAVVIEARHMCMMMRGVEKQNSLMNTSVMLGAFRESASTRQEFLQLLRRQP
>NZ_CP013184.1|WP_077933808.1|2653990_2654518_+|chalcone-isomerase-family-protein
MKRRRRVGVARLLWLLVVLSATASAGWQESLPNARLLGSGEFSWFGFKVYTARLWGTTLPLTADRPFALELTYRRTISRGDLVQSSLDEIQRLSGSAVSPAQLKDWQAQMQRAFVDVEPGQRITGVFLPGRGVQFFVDQRLQYRVEDEAFARAFFAIWLDPRTRNPQLRAQLLGQ

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Crispr_ID: NZ_CP013184_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_3

2672887-2672993

Orphan

Consensus_repeat	Method
TTCGCCGGCAAGCCGGCTCCTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_3

>merge|NZ_CP013184|3|2672887-2672993|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTGCAGGGCCGCTCCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCGCGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACA

>NZ_CP013184|3|2|2672887-2672993|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTGCA	GGGCCGCTCCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCGCGAGATCGCC
TTCGCCGGCAAGCCGGCTCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_011060579.1\|2674298_2675075_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP013184.1\|WP_019094201.1\|2673049_2674105_-\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP013184.1\|WP_077933816.1\|2666642_2667599_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223677
NZ_CP013184.1\|WP_077933817.1\|2667976_2668999_-\|purine-nucleoside-permease	unknown	unknown	gnl\|CDD\|377669
NZ_CP013184.1\|WP_041752143.1\|2681486_2682083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_053150571.1\|2670341_2670707_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP013184.1\|WP_011060582.1\|2676730_2677477_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP013184.1\|WP_041117284.1\|2665243_2666017_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP013184.1\|WP_015635075.1\|2679665_2680370_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NZ_CP013184.1\|WP_015635068.1\|2670750_2671785_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NZ_CP013184.1\|WP_015635060.1\|2664571_2664742_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366903
NZ_CP013184.1\|WP_169894142.1\|2678763_2679438_-\|histidine-phosphatase-family-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_077933819.1\|2671784_2672882_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NZ_CP013184.1\|WP_077933820.1\|2675246_2676017_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270248
NZ_CP013184.1\|WP_011060581.1\|2676077_2676734_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013184.1\|WP_077933821.1\|2677473_2678763_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP013184.1\|WP_011060569.1\|2664791_2665019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_011060571.1\|2666427_2666601_+\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|369277
NZ_CP013184.1\|WP_053150589.1\|2680587_2681490_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013184.1\|WP_077933818.1\|2669086_2670043_-\|nucleoside-specific-channel-forming-protein-Tsx	unknown	unknown	gnl\|CDD\|237911

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_011060579.1\|2674298_2675075_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.64554e-81
NZ_CP013184.1\|WP_019094201.1\|2673049_2674105_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	2.35969e-48
NZ_CP013184.1\|WP_077933816.1\|2666642_2667599_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	2.71514e-61
NZ_CP013184.1\|WP_077933817.1\|2667976_2668999_-\|purine-nucleoside-permease	gnl\|CDD\|377669	pfam06516, NUP, Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.	4.20193e-169
NZ_CP013184.1\|WP_053150571.1\|2670341_2670707_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	8.69225e-22
NZ_CP013184.1\|WP_011060582.1\|2676730_2677477_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.19828e-148
NZ_CP013184.1\|WP_041117284.1\|2665243_2666017_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.1916e-33
NZ_CP013184.1\|WP_015635068.1\|2670750_2671785_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NZ_CP013184.1\|WP_015635060.1\|2664571_2664742_+\|hypothetical-protein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	0.00296068
NZ_CP013184.1\|WP_077933819.1\|2671784_2672882_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	0
NZ_CP013184.1\|WP_077933820.1\|2675246_2676017_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	1.94841e-59
NZ_CP013184.1\|WP_011060581.1\|2676077_2676734_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.17579e-76
NZ_CP013184.1\|WP_077933821.1\|2677473_2678763_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.17158e-63
NZ_CP013184.1\|WP_011060571.1\|2666427_2666601_+\|DUF1427-family-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	5.25406e-22
NZ_CP013184.1\|WP_015635075.1\|2679665_2680370_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	1.68517e-64
NZ_CP013184.1\|WP_053150589.1\|2680587_2681490_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	6.03186e-81
NZ_CP013184.1\|WP_077933818.1\|2669086_2670043_-\|nucleoside-specific-channel-forming-protein-Tsx	gnl\|CDD\|237911	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional.	8.64056e-167

>NZ_CP013184.1|WP_077933819.1|2671784_2672882_+|tRNA-2-selenouridine(34)-synthase-MnmH
MSLDCTDYREIFLNDRPMMDTRAPIEFTKGAFPGVLNLPLMTDQERQRVGTCYKQQGQQAAIVLGHQLVSGAIKEQRIQAWADFARAHPDGLLYCFRGGLRSQIVQQWLKDEAGIDYPRVGGGYKAMRTFLLDTTEQALQQCDFVLLGGMTGTGKTQVLGQLDNALDLEGHANHRGSSFGRRATGQPSNIDFENRLAVDLLKKRERGVQSFVLEDENRMIGSCALPLPLYQSMQGLPMVWLEDSLANRVQRILDDYVVNLCAEFVAVHGEQGFALFAERLLESLNKIHKRLGGERHQRLFLLMEAALAEQARSGDVERHRAWIEGLLGEYYDPMYAFQRESKGARIEFSGEHGAVLDYLRQRSPR
>NZ_CP013184.1|WP_015635068.1|2670750_2671785_+|selenide,-water-dikinase-SelD
MSEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPKLWVGNASRDDAAVYAIDEERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRAVCDAAGIPLAGGHSIDAPEPIFGLAVTGLVEKRFMKRNDTATAGCLLYLTKPLGIGVLTTAEKKGKLRSADIGLARDWMCTLNKPGSRFGKLEGVTAMTDVTGFGLLGHLVEMADGSGLTARIHYDRVPRLPGVEYYLDQGCVPGGTLRNYSSYADKVGRVQELHKRVLCDPQTSGGLLVAVTPQGNAEFLALAAELGLELAPIGELVERQSHAVEVF
>NZ_CP013184.1|WP_053150571.1|2670341_2670707_+|nuclear-transport-factor-2-family-protein
MELSDHLLMLERQLQQAEVRTDRQALEALLADDFLEFGVSGGRWDKAQVLASLPQQVFIERRISEFAVQCLGADLAQVTYLCHNAAAPGRAASSAWRSSLWRCQEGRWQMLFHQGTPRPSA
>NZ_CP013184.1|WP_077933818.1|2669086_2670043_-|nucleoside-specific-channel-forming-protein-Tsx
MLNPLRRHASCRTLAVSLWLAGVTGLPSAFAQPTAAPADDSAQGESLSADVQPAKQGAYLSDWYNQDLMLIGSKDISFGPRPADDIYLEYEYFGRKGPFELYGYIDLPKILDIGNSHDKGIWDHGSPLFMEHEPRISIDYLAGRSLAIGPFKEWYVAFDWIYDHGSRTANRANTLYSGLGTDIDTHSRVNLSANFYGRYQWENYGASNEYSWDGYRAQLKYIVPIDSFSNGASLTYIGFTNFDFGSDLHKDNPARPANATVATNVLLYSFTHLRFTLVGRYFHNGGNWEDGSVLNFGDGEFRARSNGWGYYAGVGYQF
>NZ_CP013184.1|WP_077933817.1|2667976_2668999_-|purine-nucleoside-permease
MRGIQKVSWAMGLSALVASGAWASEAPIKPKVVLISMFAPEAQHWIERLELKREIRVPGLAAEYPVIRCNDREVCLLTTGMGQTNAAASTLALSPKFDLRKSYFLIAGIAGISPQHGTIGTAAWAHYLVEFGTQWEIDSRDAPEGWPTGYLGINTKGPNEKPPLDYKTEVFELNPKLQAKAFALSRNVALSESKESAAWRLKYPKAPANQPPVVTRCDTLAGNTWFSGTRLSERAEVWTRLLTDNKGTYCTTQQEDNSTYEALLRASREGLLDIQRLAVVRAGSDFDRPAPGASEVDNLLKYADQGGFVPALENLYRAGNPLVQDILGNWSAWEKGVPET
>NZ_CP013184.1|WP_077933816.1|2666642_2667599_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKALQFSATGDLAALHVVDLPTPVPAAGQVLVRIKAAGLNPSDVKNVLGRFPYTTLPRVPGRDFAGVVEQGPAQLLGQEVWGTGKELGFFADGSHAQYVVLSAQGVARKPRHLSFAQAASLGVPYTTAWDALERSGVARDTRLLVIGGGAVASAALALAKVRGARVLAAARRVEQVQALEAQGYPTLHLQQPETLAAQVAEVYAGGAEVIFDTTGFWLPASVPALATFGRIAIIAAPVDGHVQLPALALYRKGGSVVGINSLLYCVEACAAMLEQFGRYFDEGLLPLPEGLVESPLERGLERYAEVNQGRGEKIILIP
>NZ_CP013184.1|WP_011060571.1|2666427_2666601_+|DUF1427-family-protein
MNYLISLAAGLLVGLLYGALQVRSPAPPAIALVGLLGMLGGEQLWPVGRQLLGSWLS
>NZ_CP013184.1|WP_041117284.1|2665243_2666017_+|helix-turn-helix-transcriptional-regulator
MALAAPPDLSDPAIPVQPLARTYPRGLFIEPHEHDWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPPGVSHGIRVVSDLQMRNIYLRPSLAATLDPSVQVLQVDNLLRELIVRLVELDPPQPEYYEALVGLALLELRRARRSQLKIALPDASDRRLGSLCQAVMAAPSLAISFEQHADAAGASVRTLARLFKEQLGVGFAEWRRQVQLATAAAELIQGVPVSRIARELGYSPSSFSDMFRRELGVAPSQYASASQV
>NZ_CP013184.1|WP_011060569.1|2664791_2665019_-|hypothetical-protein
MNNAKLFVIEYTLHGAPKSFIIRQEKMDNAEAWHWASCDAGVGRIGRFGRERVKKTSKPMAEKFGIENVTWRPSV
>NZ_CP013184.1|WP_015635060.1|2664571_2664742_+|hypothetical-protein
MSTQTCACPACTCKLGAHAIVRHGKHYCCQACADHHAHGEPCASTEGCKCAKGAHG
>NZ_CP013184.1|WP_019094201.1|2673049_2674105_-|permease
MSNLASTQPNRGWAFWCKPLLFLLVAAIGLYYVKWSPYYLKAFVAADSHSIGASILNDQQSSPWSAALAYSQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFGSTLRGGLFALPGMMCSCCAAPVAAGLRRQKVSVGAALAFWIANPVLNPATLVFMGFVLGWGFSALRLVAGIVLVLGVSLVAQRVAGPEQLPEAAVDAVVEASTVNDQPFLSRWGKTLWQLFWSTIPIYVLAVLVLGAARVWLFPHIDGAMGDSLWWLVPLAIAGTLFVIPTAAEIPIVQTMMTLGLGTGSAVALLMTLPSISLPSLLMLRKDFDARVLVTVAVLTMLVGIVCGLIGAALL
>NZ_CP013184.1|WP_011060579.1|2674298_2675075_-|IclR-family-transcriptional-regulator
MSDNNNSLFNQSLEKGLAVLRAFNAAQRTMNLAEIATAADINKSSAQRMIHTLEQLGYVRKHPQTKRFQLTPRVMEIGYNYLAADTLVDVANPFLAELAQVTGETTNLTEPDGLDMVYVARFVAPKFIPIHMPIGSRIPMYCTGSGRAYLSALPAAEALQILQASDRKAHTRHTRTDLDEIQREIDATQRRGYALNPEELFLGDMAIAAPILDGKGLPVAAVHVVVPSSRWTLEEAERKLAPSVIECARAIRTSIRTL
>NZ_CP013184.1|WP_077933820.1|2675246_2676017_+|amino-acid-ABC-transporter-substrate-binding-protein
MHTRTRVLAPAVFAFCCALGLGLSASAQAEPLYKVGATATGIPFTFLDVKSQSIEGMMIDAARAVGKAGGFAVDIQQTTFAALIPSLTSNKIDIISAAMLRTPVREKVVQYSDPVFSYGEGLIVKADDASDYRRMEDLAGETVGAQVGTVFIDELNKRGIFKEVRGYDSIPDLMRDLALGRIKAGFADRPILAYQLAQGTQNKVQLVKGYQPVVMGDVCLIVRKGDAQTLAEVNRGIAAIKADGTLDRIIEHWKLN
>NZ_CP013184.1|WP_011060581.1|2676077_2676734_+|amino-acid-ABC-transporter-permease
MFLQNALDFLPILLKGAVVTLQVTVGSFVLSSLIGLVFALMMVSKVRSVALFAIGVVNVIRGLPIIVQLFYIYFVLPDFGIQLTAMQAGVIGLGIAYSAYQAENFRAGIQAIHQGQIEAAESIGMRGPMIMRRVVLPQALRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFENMTVYTLVALLYLALSLPLSFALRRLEARISTRRKP
>NZ_CP013184.1|WP_011060582.1|2676730_2677477_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQIKGVHKSFGNVAVLEGIDLQVHSGEVVCLIGPSGSGKSTLLRCINGLESYEQGDILVSGARVDRQAKSIHELRTRVAMVFQRFNLFPHRTALQNVTEGPIYVKKQDPRQARLRAEALLEKVGLAHRMHAYPDELSGGQQQRVAIARALAMDPEAILFDEPTSALDPELVGEVLAVMRKLADEGMTMIVVTHEMGFAQDVADQVCFLHSGRIVEAGPARTVLSTPSHPRTQDFLRRLLNQGAEVQA
>NZ_CP013184.1|WP_077933821.1|2677473_2678763_+|FAD-binding-oxidoreductase
MSASEPLRMPPSLWAATAMPAEHTPALAEDREVDVAIVGAGYTGLVSALRLAQSGASVCVLDAGEPGWGASGRNGGQVIPGLKFDPEQLLAKFGPVQGEALVDAVGGAADEVFELIKEHGIRCDATRKGWIQPAFSGAAMHTLEQRAEQWRQRGVAVELLDKAAVSQRIGSPQYLGGWVDPRAGSLHPLNYARGLARVAMGLGVSIHGQSRVRQLQRDGGRWTLETDRGARVRASKVLLATNGYTDDLWPGLRQTVIAANSFIIATRPLPAELRQSILPGGEVCSDARRLLLYFKQDAQGRLLLGGRGPFSEPRRDADWNHLERSLLNLFPQLAGVPIEYRWSGRVALTPSFLPQLHEPAPGLSILLGYNGRGIALSTLLGRHLAARLTGAGQGFPFPVTPLRPIPLHGLQRLYLGAGIAWYRLLDALG
>NZ_CP013184.1|WP_169894142.1|2678763_2679438_-|histidine-phosphatase-family-protein
MNLPRRLARHFKHRRYLPLPALLLGGALCLSLESSASRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLASLLPEKFGKAQYVFAADPTRNVEEGELDNSYSYIRPLMTISPSAIKLGLPVNIDFAANDTSDLADELLHDRYHNSIIYTAWSHGYLPELINKVAEEAVGERQPITEDWASSDFDSLYVLTLTWRNGKASLHSQSYKQGLDGGEQDCPS
>NZ_CP013184.1|WP_015635075.1|2679665_2680370_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MSDLSAFAVTQKWPAQFPEWIQLYSLPTPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYLADKSGQLLAQESAARYETIQWLMFQMGGIGPMFGQVGFFNKFAGREYEDKRPLERYVNEAKRLLGVLDKHLGGREWIMGERYTIADIATFPWIRNLIGFYEAGELVGIDNFPEVKRVLAKFVARPAVIRGLEIPKIS
>NZ_CP013184.1|WP_053150589.1|2680587_2681490_+|PhzF-family-phenazine-biosynthesis-protein
MPPLSFKQVDVFSSTPLKGNPLAVVFNADELSTERMATFANWTNLSETTFLLQPRDPRADYRLRIFTTTQELPFAGHPTLGSCHAWLEAGGVPRGEEIIQECEVGLVRIRRQGDQLAFLAPPLLKAGPVEPQVLEQVRRGLRLTPGDIVQAQWVDNGAGWLAVMLGERQQVLDLQPDYPALIGLAVGVIAPCDPERDDSDAQFEVRAFIAGDGMPEDPATGSLNAGIAQWLLGAGLAPARYRVSQGLSMGRAGRIDVEQIGDEIWIGGTARTCIEGHLRLFPSSEQTCENTPSPTGPRHP
>NZ_CP013184.1|WP_041752143.1|2681486_2682083_+|hypothetical-protein
MSALAPGDFAGTGTHKPARLLCAWAQVVSWKGWMLRAGLLGLLALDPLLCIAQTTAVKQPPGPATLPGNTPRSESAASASVAATPGDNGVAVNATCNLPVKPSAGKVVEIYWTQGPENRRVVGREADHYVDLNLIVRTVGYRPGECIEATIQSENAADEVADRIKKIVLRGKVDDTGMAYFKTPLKDYTLNLQGSEPP

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Crispr_ID: NZ_CP013184_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_4

3080584-3080717

Orphan

Consensus_repeat	Method
GAGATCGCCTTCGCCGGCAAGCCGGCTCCTACGGAGGGCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_4

>merge|NZ_CP013184|4|3080584-3080717|CRISPRCasFinder
GAGATCGCCTTCGCCGGCAAGCCGGCTCCTACGGAGGGCAGGACACACCAGGCTCTTATCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCCTGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACGGAGGGCAGG

>NZ_CP013184|4|3|3080584-3080717|CRISPRCasFinder
GAGATCGCCTTCGCCGGCAAGCCGGCTCCTACGGAGGGCAGG	ACACACCAGGCTCTTATCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCCT
GAGATCGCCTTCGCCGGCAAGCCGGCTCCTACGGAGGGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_077933972.1\|3072836_3074525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_077933977.1\|3082839_3084303_-\|amidase	unknown	unknown	gnl\|CDD\|180437
NZ_CP013184.1\|WP_011060955.1\|3087968_3088601_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP013184.1\|WP_187682879.1\|3085636_3086668_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP013184.1\|WP_077933975.1\|3077950_3079300_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP013184.1\|WP_053158018.1\|3080794_3081607_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP013184.1\|WP_077933976.1\|3079332_3080538_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP013184.1\|WP_011060937.1\|3070574_3071063_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP013184.1\|WP_011060942.1\|3074855_3075773_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176113
NZ_CP013184.1\|WP_047336567.1\|3081704_3082136_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|213552
NZ_CP013184.1\|WP_015635348.1\|3071994_3072561_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013184.1\|WP_011060950.1\|3082446_3082776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_011060956.1\|3088600_3089881_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP013184.1\|WP_011060941.1\|3074527_3074878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013184.1\|WP_187682878.1\|3075915_3076743_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226300
NZ_CP013184.1\|WP_011060952.1\|3084408_3085530_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013184.1\|WP_077933974.1\|3076777_3077941_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP013184.1\|WP_077933978.1\|3086909_3087911_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270392
NZ_CP013184.1\|WP_019093782.1\|3071344_3071917_+\|manganese-efflux-pump-MntP	unknown	unknown	gnl\|CDD\|224882
NZ_CP013184.1\|WP_011060949.1\|3082164_3082356_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|224853

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_011060955.1\|3087968_3088601_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.18376e-28
NZ_CP013184.1\|WP_187682879.1\|3085636_3086668_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	4.7968e-36
NZ_CP013184.1\|WP_077933975.1\|3077950_3079300_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.50063e-144
NZ_CP013184.1\|WP_053158018.1\|3080794_3081607_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	1.15594e-68
NZ_CP013184.1\|WP_077933976.1\|3079332_3080538_+\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	7.96039e-152
NZ_CP013184.1\|WP_011060937.1\|3070574_3071063_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	5.00694e-22
NZ_CP013184.1\|WP_011060942.1\|3074855_3075773_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176113	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.61366e-89
NZ_CP013184.1\|WP_047336567.1\|3081704_3082136_+\|HD-domain-containing-protein	gnl\|CDD\|213552	TIGR00691, PppGpp_synthetase., (p)ppGpp synthetase, RelA/SpoT family. The functions of E. coli RelA and SpoT differ somewhat. RelA (EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. [Cellular processes, Adaptations to atypical conditions].	8.92743e-16
NZ_CP013184.1\|WP_015635348.1\|3071994_3072561_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.56816e-09
NZ_CP013184.1\|WP_077933977.1\|3082839_3084303_-\|amidase	gnl\|CDD\|180437	PRK06169, PRK06169, putative amidase; Provisional.	4.21527e-136
NZ_CP013184.1\|WP_011060956.1\|3088600_3089881_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.26852e-142
NZ_CP013184.1\|WP_187682878.1\|3075915_3076743_+\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|226300	COG3777, COG3777, Uncharacterized conserved protein [Function unknown].	5.01139e-110
NZ_CP013184.1\|WP_011060952.1\|3084408_3085530_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.94205e-177
NZ_CP013184.1\|WP_077933974.1\|3076777_3077941_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.95434e-110
NZ_CP013184.1\|WP_077933978.1\|3086909_3087911_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270392	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.37522e-154
NZ_CP013184.1\|WP_019093782.1\|3071344_3071917_+\|manganese-efflux-pump-MntP	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	1.67777e-63
NZ_CP013184.1\|WP_011060949.1\|3082164_3082356_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	4.72545e-19

>NZ_CP013184.1|WP_077933976.1|3079332_3080538_+|CoA-transferase
MTDNTAQPRPLDGITVVSLEHAIAAPFCTRQLADLGARVIKVERPGSGDFARGYDQRVKGLASHFVWTNRSKESLSLDLKQPEAEGLLDSLLAGADVLVQNLAPGAAARMGLSFEALHERFPRLIVCDISGYGEGGPYERKKAYDLLIQSEGGFVSVTGGPEPEQMAKAGCSIADIAAGMYAYSGILSALLLRGRTGLGSRIDISMLESLVEWMGYPLYYAFEGAEPPPRAGAAHSTIYPYGPFPAGDGGTVMLGLQNEREWAAFCDKVLELPELATDERFGANFKRSANREALRQIIVERFARLSVALVIERLEQAQIANARVNDMQGVWQHPQLAARDAWRQVDSPAGRLPALLPPARNSAYAPRMDAVPALGQHSAAILAELGLSPQGIEQLQARGVI
>NZ_CP013184.1|WP_077933975.1|3077950_3079300_+|MmgE/PrpD-family-protein
MSHTHDLAGFLAGLRYADLPESVLLRTQELFLDWLGSALAAQGAHPIPLFEAYARHMGPASGPARILVNGAGSSAYFAALVNAASSHLVEQDDLHNSSVLHPATVVFPAALAAAQDLGKSGRELLLAAVAGYEAGIRIGEFMGRSHYRIFHTTATVGTLAAAVAVGKLMEFDSEQFINLLGSAGTQAAGLWEFLRDAADSKQLHTAKAAADGLLAAYLTRDGLSGARNILEGEQGMAAGMSRDAEPALLSARLGSRWALLETSFKLHASCRHTHPAADALLEVMQREGLEHGQIARVLTRVHQGAIDVLGRVQVPQTVHQAKFSMGTVLGLIAVHGKAGLPEFQRHGLNDPRVAAFRDKVGMQLDPEVDAAYPARWLGRVEVQCVDGRTLHGAIDEPKGDPGNGLSRAELEDKFQRLLQFSGARTPEQGNALIRRVWALRDAADLNSLL
>NZ_CP013184.1|WP_077933974.1|3076777_3077941_+|acyl-CoA/acyl-ACP-dehydrogenase
MPPHDTEELNAIREGVRALCAEFDAAYWRGIDERKGFPEAFVKALTEAGWLAAMIPAEYGGSGLGLAEASVILEEVNRCGGNSGTVHGQMYNMFTLLRHGSQAQKHYYLPKLASGELRLQSMGVTEPTTGTDTTKIKTTAIRRGDKYVINGQKVWISRIQHSDLMILLARTTPLAEVRKKSEGMSIFLVDLRQAIGNGLTVQPIANMVNHETNELFFDNLELPADSLIGEEGKGFKYILDGLNAERTLIAAECIGDGRWFIDKASAYARDRVVFGRPIGQNQGVQFPIAEAHIEIEAADLMRWRACEEYDSGGNAGASANMAKYLAAKASWEAANACLQTHGGFGFACEYDVERKFRETRLYQVAPISTNLILSYVAEHLLELPRSF
>NZ_CP013184.1|WP_187682878.1|3075915_3076743_+|MaoC-family-dehydratase-N-terminal-domain-containing-protein
MSATDPSAWIGRSQRIDDHLSHNLLARIAATFGQPAPAPGEALPPLWHWCFFQQPQPASALGGDGHPARGGFLPPAANRNRMWAGGRLAFHRPLRAGAEASCTSTILHVEEKAGRTGKLLFVTLCHEYFQDGQLALREEQDIVYREASPPKMSSGELLPEGDWREPVEPTPTLLFRYSAVTFNGHRIHYDYPYVTATEGYPGLVVHGPLIATLSLGAFCRAHPEARLRHFAYRGLRPLIAPQPFEVGGRISAPGHAELWAGDGSGLAQRGEVQFD
>NZ_CP013184.1|WP_011060942.1|3074855_3075773_-|LysR-family-transcriptional-regulator
MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARIKALEGQLETRLLYRDSRGVEVTPAGERLLQHARLIMRQVDYLKSEFTQYGGDSSGHIRIFANTTAVTEFLPEVLAKFLSVRPGVTVDLQERLSRDIVRGVLDGTSDMGIIAGPVEASGLQVLHFSTDHLVLMVPVGHPLSGQASVTLEQTLAYQHIGLHEGSTLLTFLREHVERLGKQLSLRIQVSSFEAICRMVEAGVGIGIIPESAALRHSRTMQLVTVKLDESWAVRERSIIVRELEALPGSVRALIATLMPASQEPSIAGNPG
>NZ_CP013184.1|WP_011060941.1|3074527_3074878_+|hypothetical-protein
MALNTFKDVQNLLDAFVAQNNLPISGAPHGAFWQTSYQSFVTGNVPGIQNPETGQAVPILVKGDGAHSNLIYALSGTPGTPWGPDGDFGQMPPGGPFLPQAQIDELSAWISQGCPQ
>NZ_CP013184.1|WP_077933972.1|3072836_3074525_+|hypothetical-protein
MEHQQDKNRLQRQVSYIAISVGLALLGGVSNAAPVSITVSPEVPADIPGGASQATLAQAAAFAWQEFIALNWPALGGQRDVPDIRQPFGSQGVPLVWHTYRSKVEIFPGKGSANVGPPGYKPDGAPSYGYGTAPTYDYSFTVPACSGQIAPKLPAWINLDESTQIGLDQMYAGVVPATPTGGNSNPQLVRFLAKANQVQYTYVAANQFWYANPALAQAARNFFNAVKQTPPTFPSAPRVNFPNGTIEVKSAWRQLGPGEDPSRFHRQTVRFYEQPPGKGTCYFEAQWAMVALHIIQKTPTAPSFIYATFEQADNILLPSGKPLEDENGRIINPAPGPMPTNPGLSYQDDPNNPQVKALGAFCKPGKQLYLREIAKGGTPAGGPICINQRYEPIAADVIQVNQAAHQAIQSYSQAKNVKNSPWQYYKLVSVQAQPFDTTQLSKTDPSHSAAVYYQANIMVETDYTLQQFRGRIAANGAPTSFQAAGAPPPPNVFTQSAGSAAVHGVNMGGCMGCHGNAQVAGFDFSFILKGGNVRAPETAGAESAAAASQRYLQLFTPSTTGK
>NZ_CP013184.1|WP_015635348.1|3071994_3072561_-|GNAT-family-N-acetyltransferase
MPSTALDTLAHPPFPAQQGQYWIDALNDGSHVLIRPLRPQDREREKAFIENLSPATRHQRFLGEIKEVGEQLLNQLMDVGTPQRVAYVALVHDNGELREVGISRYAQVDEQPLHCEFAVTIADEWQGKGLGALLMQHLIDEARNNGFQQMYSVDSAANYSMRRLAKQLGMRSAIDPDDATQVIHSLAL
>NZ_CP013184.1|WP_019093782.1|3071344_3071917_+|manganese-efflux-pump-MntP
MNPASIIFLAFAMSTDAFAAAVGKGSAMLKPRLLEALRIGLIFGVIEAITPVVGWFIGQAATQWVANWDHWIAFSLLLLLGLHMIYNGTRQQAEAEEEKPRQHGFWLLAVTGLATSIDALAVGVGLAFVNVNIWVAASAIGLATMTMVTLGVMLGRAIGTVMGQRAEVLGGVVLIIVGSGILYEHLSAVA
>NZ_CP013184.1|WP_011060937.1|3070574_3071063_-|GFA-family-protein
MQLQGSCHCGAVHFSLSSRHPYPYQRCYCSICRKTQGGGGYAINLGGDAASLKVRGRKHIVIYHARLKPAGAARAHSSSAERHFCGRCGSGLWLFSPQWPELIHPFASAIDTPLPVPPQHTHLMLDSRAPWVEVDAGAHDLQFAEYPEESIAQWHQRLGLEA
>NZ_CP013184.1|WP_053158018.1|3080794_3081607_+|CoA-ester-lyase
MSNPIVRSALFVPGSRPERFAKALACGADAVIVDFEDAVEEPLKVQAREHLGRFLLAQPQVRAWVRINAPEHPQHLADLAFCQAHAGVVGILLPKVESAAQVAQVAASGRLVWPIIESARGLLALGEIASAPGVQRLSFGGLDLALDLNLSSGSAAAQFALDQARLALILHSRAAGLQAPLDGVFPGIADSQGLAASVRHAYAMGFAGALCIHPAQVPVIHQALAPSAEELAWAQRVVEGGREGAGAYQVDGQMVDAPVLLRAQRLLAMA
>NZ_CP013184.1|WP_047336567.1|3081704_3082136_+|HD-domain-containing-protein
MSSLERAIALAAQAHAGQVDKGGAPYILHPLRVMLRLTHPEARIVAVLHDVLEDCPITPEQLRGEGFSEEVLAALLALTKVAGEDYPAFIRRAGANPLARQVKLADLAENSDLSRIPEPGAEDLRRLEKYRQATDYLNSLARD
>NZ_CP013184.1|WP_011060949.1|3082164_3082356_-|4-oxalocrotonate-tautomerase-family-protein
MPYINLQITKGATRQQKAQLVKEFTESLVRVLGKKPEHTHIVIQEIDGSDWGFAGELSDDDQA
>NZ_CP013184.1|WP_011060950.1|3082446_3082776_-|hypothetical-protein
MDSSSSWYQDTQFDHDIYVMIIREPSSPSLDPHQSGSSYSYVGRLTGHGQHPCFSVHFACPPYGNDYASTEAALQAGLAHGRALIEHWRTRGRKPPARTAEVALSSYSN
>NZ_CP013184.1|WP_077933977.1|3082839_3084303_-|amidase
MSLPTSSQAALPHLSIEALLQGFATLQFTPVDVLQAVLAQIERHEPQLNALCERQDPASLRAAQASTARWAAGQPMGRLDGIPILVKDNNDVQGWQTRSGSRALANRPAMTRDSSLVARLREAGAIFIAKTTLPELGSTPLTDSPLTGITRNPWNLALHAGGSSGGSTAGVAAGYAPAATGNDAAGSIRTPSSFCGVVGFKPSHGLVSACPSIDPGGMAAEGPIARHVRDIALLMELMAVHEPGEPFAWPHGPRDFLSSIEDGVAGLRIAFSADLGYAAHVDPQIAAACLNAARLLQEAGATLVLASPDIGNPAPNYLRAWPVEVACAVAQEIPAEDRHLVGDFLQQAQVRARQLNALDYACAVQERHRVAQKLHAFLGEYDLLLTPAAVVEPFAVERLLPPDWPEQISAMWQPTTFPFNFSRQPALSLPCALSEAGLPIGLQIVARFGCDALVLRAARALEKRLPEGVFRHPAGLHDAPQASPANR
>NZ_CP013184.1|WP_011060952.1|3084408_3085530_-|polyamine-ABC-transporter-substrate-binding-protein
MKSLHTALSRLATACTLGALALAASVTAQAAPERTVNIFNWSEYIAPNTIKDFQAQSGIKVKYDIFESNEVLEAKLLTGNSGYDVVVPSSGFVSKQISAGAFQPLDRGQLPNWKNLDPAVMKLLEQSDPGNRYVIPYMWGTNLIGYNRDKVQELLGSDAPVNSWDLVFKEENLKKLSQCGVTFLDSPTEMLPLALHYLGLDPNSQNPEDYRKAEAMLLKLRPYVRYFHSAKWMGDIANGNICVAVGYSGGFLQAANRANEAKNGVHIEMRIPKEGTLVWIDTVAIPAGAKHVDTAHAFLNYLMEPKVIASISNYVGYPNGVTDSKPFIQQSLLDNPDLFPSAETMTRLYPLAPLPAKAERTRTRTWVKVTSGR
>NZ_CP013184.1|WP_187682879.1|3085636_3086668_-|AraC-family-transcriptional-regulator
MTALRLTTLHTTQAVLDAFRDSDVPAQVLLEGSGIQLADLELPNSLINISQEMRVFSNAVQFRQDLGLVLGRNLHISAYGMFGLTLLTSATLREGWSLALRYPLLLGTFFRLDLEVRDGLAWLTADQYSESELEVFNTDFCMSSYRVTCQDLLGCSLPLRQVQLMHGPQPYTDSYEQAFNCPVQFNAGRNAIGFDLEWLDRRLPLADLVTQNDMLQRCIRLNEELSARPTWIDQVRRILNEQLHAVPDFDSLARQVHCSPSTLRRRLRAQDTSYQQLLDELRYARAQQLLGQHSLPIYRIAEALGFKETASFRHAFQRWSGVAPGRFRQLAGQLGPLSDCAED
>NZ_CP013184.1|WP_077933978.1|3086909_3087911_+|TRAP-transporter-substrate-binding-protein
MFKLSRALFCAAALLAAGVAQAAESTGNPIIIKFAHVVAENTPKGQGALLFKKLAEERLPGRVKVEVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQYTKKIQIYDLPFLFDDLAAVDRFQAAEGKQLLTSMQGKGILGLAYWHNGLKQLSANKPLHEPRDARGLKFRVQASSVLEEQFKAMRANPRKMSFAEVYQGLQTGTVNGTENTWSNYESQKVNEVQKYFTESNHGLIDYMVITNASFWNGLPADVRGELEAIMAEVSVEVNKQAEALNQSARQKIVEARTSEIIELTPEQRQAWRDTMRPVWSKFEDEIGADLIKAADAANQRH
>NZ_CP013184.1|WP_011060955.1|3087968_3088601_+|TRAP-transporter-small-permease
MQSLRRIWEHLEEGLIALLLATMTLVTFVYVMLNNIYTLFFALADKWAASSAFFNALGDATMGLAQDMTWSVALTKAMFGWLIFFGISYGVRTAGHLGVDALVRLTPRPVQRYLALLACLCCLVYAGLFMVASFKWLSAIMAAHIGAEDLDRFGIQVSHIVVIVPIGFALVLIRYLEIFYRIFTRRQFGLGLADEAGEASKLAGSHEERH
>NZ_CP013184.1|WP_011060956.1|3088600_3089881_+|TRAP-transporter-large-permease
MAVLCLFLLLFVFMFLGVPIAIALGLSGAVSILMFSQDSLSSLAIKLFETSDAYTFLAIPFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAVAGMVRSGYPKEFGAGIICNAGTLGILIPPSIVMVVYSAATETSVGKLFMAGVVPGLLLGLLLMVAIYIVARVKKLPAQPRATFGQWLSAARRAFWGLLLLVIILGGIYSGMFTPTEAAAVAAVYSAFVALFVYRDMKLRDCPKVLLESGRLSIMLMFIIANAMLFAHVLTTEQIPQEITAWVISEGLTPIGFLLMVNVVLLVAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIRAAMPWLMILLLFLILVTYVPLISLALPNWLGM

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Crispr_ID: NZ_CP013184_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_5

3399868-3400026

Orphan

Consensus_repeat	Method
CGCCTTCGCTGGCAAGCCAGCTCCTACAGGGTTGTGGGAAAGGTCAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_5

>merge|NZ_CP013184|5|3399868-3400026|CRISPRCasFinder
CGCCTTCGCTGGCAAGCCAGCTCCTACAGGGTTGTGGGAAAGGTCAACGCGCTTGTAGGACCCGGCTTGCCGGCGAAAGGGCCCCTGAGCCGGGCGTCAGCCTCTTAACCGCCTTCGTTGGCAAGCCAGCTCCTACAGGGTTGTGGGAAAGGTCAACGC

>NZ_CP013184|5|4|3399868-3400026|CRISPRCasFinder
CGCCTTCGCTGGCAAGCCAGCTCCTACAGGGTTGTGGGAAAGGTCAACGC	GCTTGTAGGACCCGGCTTGCCGGCGAAAGGGCCCCTGAGCCGGGCGTCAGCCTCTTAAC
CGCCTTCGTTGGCAAGCCAGCTCCTACAGGGTTGTGGGAAAGGTCAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_015635541.1\|3387743_3388679_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NZ_CP013184.1\|WP_011061202.1\|3392705_3393902_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341483
NZ_CP013184.1\|WP_065364012.1\|3412859_3414062_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP013184.1\|WP_011061198.1\|3388763_3389684_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143588
NZ_CP013184.1\|WP_077934088.1\|3394001_3395483_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|132469
NZ_CP013184.1\|WP_011061206.1\|3398351_3399605_-\|ferredoxin-reductase-family-protein	unknown	unknown	gnl\|CDD\|99795
NZ_CP013184.1\|WP_011061199.1\|3389676_3390228_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP013184.1\|WP_053158387.1\|3391278_3392709_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143428
NZ_CP013184.1\|WP_011061215.1\|3409831_3410908_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013184.1\|WP_011061205.1\|3396812_3398351_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013184.1\|WP_041752238.1\|3390372_3391269_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013184.1\|WP_053158391.1\|3395775_3396684_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176165
NZ_CP013184.1\|WP_015635555.1\|3411751_3412612_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP013184.1\|WP_053158398.1\|3400091_3401174_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238527
NZ_CP013184.1\|WP_077934089.1\|3405733_3406942_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NZ_CP013184.1\|WP_011061216.1\|3411020_3411602_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013184.1\|WP_053151566.1\|3406957_3408181_-\|signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|367570
NZ_CP013184.1\|WP_065364013.1\|3414037_3414823_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153235
NZ_CP013184.1\|WP_053151563.1\|3404145_3405729_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NZ_CP013184.1\|WP_077934090.1\|3408203_3409277_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270273

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_015635541.1\|3387743_3388679_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.54096e-79
NZ_CP013184.1\|WP_011061202.1\|3392705_3393902_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341483	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains proteins similar to iron-containing alcohol dehydrogenase (Fe-ADH), most of which have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.	3.2755e-171
NZ_CP013184.1\|WP_065364012.1\|3412859_3414062_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.48473e-72
NZ_CP013184.1\|WP_011061198.1\|3388763_3389684_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143588	cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1.	2.02498e-143
NZ_CP013184.1\|WP_077934088.1\|3394001_3395483_-\|amino-acid-permease	gnl\|CDD\|132469	TIGR03428, ureacarb_perm, permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.	4.52816e-53
NZ_CP013184.1\|WP_011061206.1\|3398351_3399605_-\|ferredoxin-reductase-family-protein	gnl\|CDD\|99795	cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	2.30048e-79
NZ_CP013184.1\|WP_011061199.1\|3389676_3390228_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.11809e-31
NZ_CP013184.1\|WP_053158387.1\|3391278_3392709_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143428	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.	0
NZ_CP013184.1\|WP_011061215.1\|3409831_3410908_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	9.48642e-127
NZ_CP013184.1\|WP_011061205.1\|3396812_3398351_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.85304e-37
NZ_CP013184.1\|WP_041752238.1\|3390372_3391269_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.03728e-40
NZ_CP013184.1\|WP_053158391.1\|3395775_3396684_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176165	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 7. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.71507e-114
NZ_CP013184.1\|WP_015635555.1\|3411751_3412612_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	7.66935e-56
NZ_CP013184.1\|WP_053158398.1\|3400091_3401174_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	9.08382e-79
NZ_CP013184.1\|WP_077934089.1\|3405733_3406942_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	1.39602e-73
NZ_CP013184.1\|WP_011061216.1\|3411020_3411602_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.77085e-11
NZ_CP013184.1\|WP_053151566.1\|3406957_3408181_-\|signal-peptide-containing-protein	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	7.52032e-07
NZ_CP013184.1\|WP_065364013.1\|3414037_3414823_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	1.08154e-27
NZ_CP013184.1\|WP_053151563.1\|3404145_3405729_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013184.1\|WP_077934090.1\|3408203_3409277_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270273	cd13555, PBP2_sulfate_ester_like, Sulfate ester binding protein-like, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.73933e-127

>NZ_CP013184.1|WP_011061206.1|3398351_3399605_-|ferredoxin-reductase-family-protein
MKTWHTLVGILLITTATLLLEIPSATWLTSATLSMILGTAALAYMAMSCLLASRWGWVERLFGGLDRVYEAHKWLGIWALAFASYHLVFKANLDEWNSVPILELSKYWTRLVRQLSYVALGLIVLLALNRNIPYSQWRWWHKLSGPLFLIVILHWLSFKSPITLDSPSGIWLALLCVLGVLGALYKLLLYPLVAKAGEYQVTAVRVEKNSLHLELIPQGRGFPFKAGQFAFLSMQEKGLREPHPFTIASAQAHDGRIEFVIRALGDYTQRLRRQVKVGMRADIYAPYGRFKRPQAAAREIWIGGGVGISPFISWLQDEAAGQFDKATLVYCYNPSRAFPSVDTLQGMAQARGVNFVANCGGTEPLAQTLKRTAAETDPQQIQVSFCGPKGLLGQVRELMSECRIPQGNLHYEFFEFR
>NZ_CP013184.1|WP_011061205.1|3396812_3398351_+|MFS-transporter
MNPELELPLGQAAQSRRQSAHGVLAAVCLAALMLPLTFVGVAVATPAIGHELGGSPLALSWTTNAFMLTFGSVLMAAGTLADEFGRKRLFSLGVALFGLSSLALVFVPSLLWLNLLRGVQGLAGAAALAGGSAALAQAFDGPARTRAFSLLGTTFGVGLAFGPILAGVLVEQAGWRGIFVSGALIGGLSLAFGVPRMQESRDPDAQGVDWPGTLSFTLALVLLTWGILQAPQNGWSSPWVLLLLAGALLALWLFIVVERRAARPMLDLSLFRYPRFVGVQVLPIATCYCYVVLLILLPIRFIGVEGYSAIDAGLLMLALSAPMLVVPFAAGWLSRWCSAGNLSSLGLLLAAAGLWWLSRIAAGQAPADRIWPLLLIGLGSGLPWGLMDGLSVSVVPKERAGMASGIFSTTRVAGEGIALALVVALLAGLLQHALADQALPAETLMGAARQLAGGDLPGTLAALPALGREGLLALYGQAFSQLLQVLTLMTLLAALVVWVTLREPRQPGPPAA
>NZ_CP013184.1|WP_053158391.1|3395775_3396684_-|LysR-family-transcriptional-regulator
MDNLNGLQVFVSVVQSGSLVGAGGRLGLSASAVGKALARLEQRLGVRLLNRSTRRISLTDEGALFYERGQRIVAEVQEAEAELARISDKPRGRLRVSLPAIGYRMLLPILPEFSARYPDIELDLDFNDRLIDVIAEGVDAVIRSGELPDSQLKSRNLGPFGFVLVGAPGYFARRGTPRTPRDLEQHACLRYKFPGGSLLQQWSLRLPDGAPPLVLGSALTSNNLESLIHAATQGLGIAYVPEFVVCGALADGSLVAVLDDYQQERGKFSILWPSSRHLLPKLRVFVDFLGERLELGKHHASR
>NZ_CP013184.1|WP_077934088.1|3394001_3395483_-|amino-acid-permease
MTDFLPAPGTDEHLLHHQGYRQELHRGLSLWSSFSVGFATVSPVVGIYSVMALGAMSTGPSWVWIVPLCLALQMLVALVYAELASQYPLAGGCYQWVKRLAGDRWAWFTGFMYLASALASLTTVAYLGGFWLWLFVTGTPPSANAQVASGAVLLALGLGVNLLGINPLKYFVNAGIIAEAIASIGIGVLLLLFFRNHSWSLLLEGLGNSVSGDGTYLSGFVTAMAVGGWAFLGFDACSQVSEETADARTSTPRAILRSMLLVGLTVMLTAFAVTLSFTDTAGLVVGQVVDPVTPAVVDAFGAWAERPFVGVVLVAFIACVVSVQTYIGRAVFGMARDSILPASAFLRRVDGRKVPFAAMLVCTLFASFGLALGLNATAVGTLIAFGSGGFFMVFLIVIGCALVHRLRGRWRPDAGVFNLGRWGLPVNLAAFVWLLFESVNVAWPRESLAPPGAPWFQVWAVVLVFSTLAVLGLIYMVLAKPYLRRDSSASDRG
>NZ_CP013184.1|WP_011061202.1|3392705_3393902_-|iron-containing-alcohol-dehydrogenase
MPPSIHYWNYPTEIFCGAEALHGLAQRCALLGMARPLLVTDPGMLELEPFGLLTAHLEQSRQGFAVFAELASNPSLDDVQRGVQAFRAGGHDSLIALGGGSAMDAAKGIALAAVDPQGLQRFEWSQVIEHYPSLSDFPRLGLPPLIALPTTAGTGSELGREAVLTDSQQQVKRVISHPELLPACVILDPLLTRGLPPALTAATGMDALTHHIEAFCSPLYHPMSSAIAVEGMRLVQQHLRRAVSHGQDLDAREGMLVASAMAAVAFQKGLGGVHALAHPLGARYHRHHGLLNAVLLPYVLVANQPVIAEEIGRLARYLDLPRGDFQGFLDWILALRAELGIPHCLADIGLDSHEAEWVGAQALADISSSDTNARPLSAADYSQIFRNAVHGVLPGARP
>NZ_CP013184.1|WP_053158387.1|3391278_3392709_-|aldehyde-dehydrogenase-family-protein
MKPALFIDGHWVDGDGALMPVHDPSLGQIMAQVPAASAHQVNLAVQAARRALPGWRSLSGARRAEYLQGFARHLQQRREGLIALQMRNNGKPRHEAELDLDDAIATFDYYAGLAAQLDARQDQPVPLQAPGFSAHCRFEALGVVGLIVPWNFPLVTSAWKLAPALAAGCTLVLKPSEVTPLIEQVYGEIADALGLPAGVLNLVAGAGETGAALSQHPGLDKLSFTGSTATGQRVMASSAAFCRPLTLELGGKSPILVFADADLDQAVHWIIGGFCWNAGQMCSATSRLLVHESIADALLQRLRSALLALRVGNPLEQEVDMGPLSCQAQWRTVCTYLEQARNEGLECLVGGHALPGPGWFVAPTVYTDVPTSSRLWQEEIFGPVLCMRRFSDEAQALALANDSAFGLVATVISADLQRAERVAAALDVGHVWINSLQAVFVETSWGGTKGSGIGRELGPWGLAAYQSIKHLTRCLG
>NZ_CP013184.1|WP_041752238.1|3390372_3391269_+|LysR-family-transcriptional-regulator
MLRNVTDMDLRLLRIFSVVVKCGGFTAAQAELNMSQSNISMHISSLEKRLGYRLCERGKGGFRLTEKGQRILAAAQALFGAVEVFKSEAQELSGRLVGDLYLGLADNIATLPAARIDAAIARFYRREHDLHLHVFINSPTELERAVIDGQLDLAISYFSRSLPTLDYQPLYAEEIALFCGASHPLFPVLEPELAHIKACDWIKHGFLPANQVLPVTPQRASATAYHMEAVVHGVLAGTHLGYLPSHYAQPWVAAGQMRVLHPETLRYEVQHSMITHAGHARGEALKAFIADLLAEHGG
>NZ_CP013184.1|WP_011061199.1|3389676_3390228_-|GNAT-family-N-acetyltransferase
MDSHPTPALCTERLLLRPLELADADAIQQLFPQWEVVRYLNALVPWPYPADGALSFLRDMALPAMARGTEWHWTLRLRSNPGQMIGSISLMDEADNNRGFWLAPPWQGQGYMSEACKVVDHYWFEVLQRPLMRVPKAAPNQGSRRISERAGMRLIRSEDGEFVSGRFPVDIWEITREQWRRLR
>NZ_CP013184.1|WP_011061198.1|3388763_3389684_+|carbon-nitrogen-hydrolase-family-protein
MPKSVVAALQIGALPEGKAATLEQILSYEAAIIEAGAQLVVMPEALLGGYPKGEGFGTQLGYRLPEGREAFARYFANAIEVPGVETDALAALSARTGANLVLGVIERSGSTLYCTALYFDPQQGLSGKHRKLMPTGTERLIWGKGDGSTLPVLDTQVGRVGAVICWENMMPLLRTAMYAQGIEVWCAPTVDEREMWQVSMRHIAHEGRCFVVSACQVQASPEELGLEIANWPAQRPLIAGGSVIVGPMGDVLAGPLVGRAGLISAQIDTADLVRARYDYDVVGHYARPDVFELTVDQRPRPGVRFT
>NZ_CP013184.1|WP_015635541.1|3387743_3388679_-|LysR-family-transcriptional-regulator
MNQMNIASVDLNLLKAFEALHDESSASRAALRLGVTQSAMSAALRRLRELYGDPLFVRTGRGLAPTLKANQLKPVVSEALNKCRQSLAMVAPDTADYQGRSVTLGLSDDFEIAYGRQMIEAVARRAPKLRLIFRQSHSQIVAEALLQRSVDLAISAGGFAERLLSRQVLGEGHYLCLADPASLAPGQQQISLEEFVAREHLLVSSQGFIGITDEGLANLGLSRQVCASTTHFAALPFLLKGSQAVATIPAHAARRIAELTGLQLLPCPLALPRYPIELGWRTSPQTDPLLVKVREAIVESFALTCSPPSGD
>NZ_CP013184.1|WP_053158398.1|3400091_3401174_-|LLM-class-flavin-dependent-oxidoreductase
MSIEFVGMIFPRQWSETRGVRSPDFDLAFIREHARAHEHAGFDRVLIASGPGSADSLQIAAYAAAHTERLGFMIAHRPALSAPTVAARAFATLDHTTGGGRIRLHAITGITAEPQEGDTLLDKTERYRRTDEYLEIVRRTWTAEEPFDFEGRYFNLKGAFSPVKPLQQPHIPISFGGSSDIAYQIAVKHADLYALWGEPLEGVAEQIGKLKAAASAAGVAAPRVSLSVRLILGATEELAWQRAEQILAQIRANPQFAAGSPWQKRLKGTGSERLLAAAARGDRHDRALWMPTASAVGAYGDTTALVGTPETVAQALLDYVDLGVTTFLNRGYDPYYDTIDYGRWIIPAVREAATRRKQHL
>NZ_CP013184.1|WP_053151563.1|3404145_3405729_-|ABC-transporter-substrate-binding-protein
MSQDYSGLSRRRFLGHSALFGGGLLLGSSLLAGCDADNSSAPGTVASDQPRYGGRLRLGILDGNQSGNLDAHKPIGSGIVRGFALYSKLWEWDEQMQPRLALAEFAEPNADASSWTLRLRQGLEFHHGKSIDADDLIFSIRRLTDPQLASPYAALLHWVDRDNLQKLDERTVRLSFREGRSYMPLAETWVNFGGIVPVDYHPVTNPVGAGPYKLKSFTPGQRSLFTRFDNYYKDGQPYADELEIIDFKDQVARLAALRSGQIDMANVMPTEQLQVLQRDPRVRLLKSVTGNWLSFDMNLDKPPFNDPRVRQAFRLLADREELVRRALNGQGRVANDLYAPSDPTFNHSLGPRPHDPQRAAQLLKEAGQENLELELVTTPGPALTSALVLAEQAKRIGVTLKVRQVDLATFQGPQRNDWTLSTGGSIGAPFLASAIHTDAPFAVSNKTHFNDPQFSEVFLAAMAQPDLQRRTALVHQAQQIQYERGGMLIWGYADLLDSVSTRVGGAREEQSLFSTWRFERLWLNNSA
>NZ_CP013184.1|WP_077934089.1|3405733_3406942_-|LLM-class-flavin-dependent-oxidoreductase
MSIEFFTRLPLHGETQFLPGDPRNRGDWHRGGPSTGAVSGFSVGDHFTYIDYLGQIARAAEINGFGGALMVNAPSGEEPWTVCSLLARETRTLKFVTAFQPYHYTPWVAVQQAATYQRATGNRLVWNIINGGSDAIQRQVGDFSDHDERYARATEFMDLVKGYWHNENFHYQGQFYSAEGGGLRGPLKKAELPLICTAGSSIAAREFAAKHADFYLMRAEHPDEIAALIADIRERALQYGRSDIRFGLSIDVITRETEELARTEAKRFFDEGIAKGAVKAVAAHAGLRTARKLSYENGFAQKNETQGFEDFFIHPNVWTGFGYIGIPPGCALVGSYENVVARIREYHAIGIDLFFLAGYPHLEEAYRLGEHILPHFRGERAALSRQPQAPLELRSANGPAGA
>NZ_CP013184.1|WP_053151566.1|3406957_3408181_-|signal-peptide-containing-protein
MKLSAKFTFGLSVLALSLSALAGPTYAPKPDPLQGDGRVSAFYTWQDAIPPTPGKLLRSEPLEATLSLPNAASAQRILYSSTDGIDGKTPVVVSGTLFLPKGKAPAGGWPVASWGHGTVGVADVCAPSWQGRSYRDVQYLSRWLDEGFAIVATDYQGLGVPGGHPLLNNRMAAYGILDAAKAVVAGVPGLANKVLIVGQSQGGAGAFASAAYASTYAPDLGVKGSIGTGVIYTIGAKNVGEQDPNKVDASLAYGFYTLLAAQQYDPSIDPRDFYTDKALPLFEQARTSCLASLVSDVVGVGLTPANAKKDYQGSQLAAWQKQVSYPTLKTAQPVFIGTGAEDKTPAAATQVALMQDACKAGSVVEGHLYKGLGHSETVNASLKDSVPFAHKVINGQAITPVCNPSVQ
>NZ_CP013184.1|WP_077934090.1|3408203_3409277_-|ABC-transporter-substrate-binding-protein
MQGLWRNTLAVMAGLLISVTALANPAPESVKIAIVAFTQGGKPVFGGIAGRVIEDGWLEQQLSQRDIKLQWIALPHAGAGPQINEGFSNNSIDFAVRGDLPSVIAGAGGVPGKLIVPGGSGNNIYLVVPTQSTAKSIEDLKGLRLALHRGRPWEFAFSNFLASKGLKLDDFKIANLNPQVGAAAVSAGKVDAAVLLSEAYALEDKGVGRIIWSTKQGANDWRLVSDLWGTDSFIEQHPEVTQLLATAWVKAAWWISQEQNQDAYYQLSSRAGTAESVLRRDDQGDPVAWKERWAPKSDQQLKAHYQALSDYALANQLIRTPYDITPALATGFTNQALIDLHLSDYWPALRGQVATHP
>NZ_CP013184.1|WP_011061215.1|3409831_3410908_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSLITHPNARELTKSVRATVLVFKDPRSQELLSRIERLAPSEANTLIIGETGTGKELVARHIHHLSRRGREPFVAVNCGAFAETLVESELFGHEKGAFTGATTHKAGWFEAANGGTLFLDEIGDLPLNMQVKLLRVLQEREVVRLGSRTPIPINVRLVAATNVNLADAVVAGHFREDLFYRLHVATIRLPPLRERPGDILPLAEFFLEEHCQRLGYNRASLTEEAERKLLEHSWPGNIRELENAIHHALLVCRQQRVAPGDLHLVDMRSSGIRQEQAPLAVPGPQAPADLGRALQALFEQNIPDLYEHIEETIFREAYRYCHGNQLQTGRLLNISRNIVRARLEKIGELNKPLATSAS
>NZ_CP013184.1|WP_011061216.1|3411020_3411602_+|TetR/AcrR-family-transcriptional-regulator
MRPKEFDPEQIADAAMQVFWQRGYAATSIQDLVEGTGLSRSSLYNAFDSKHGLYTCALKRYQQMTSANIELLGADAPARELVRRLLMRIVDNELEDTRRLGCLAANASLEMAGQDAAVAQLVAQNFQRIEAALEQVLRRGQEQGEIDPQKNPRALASFVVCTVQGLRVLAKGSLAEQRRQRLLDVVEVVLASL
>NZ_CP013184.1|WP_015635555.1|3411751_3412612_+|NAD(P)-dependent-oxidoreductase
MAKQPGSIAVLGIGIMGAAVARNLRRKGFAVRAWNRTLQRAQALIADDIQVFAEPAEAVRGAQVIITLGKDGAAVLQAMQQARDGFEPGALWLQMATVGIEANDELQGFARDGGLVFYDAPVLGTRQPAEQGQLVVLGAGPEAHRPALQSLLEAIAKRVLWVAEQPGAGSRLKLALNSWVLALTHGAAESLALAKGLGLDPALVVELVSGGPLDSGYFQAKTRAMLSGDYSPSFTLANALKDAELMVAAAARAGVRLDLAEAGIQRFQRALEQGHGDKDMAASYLG
>NZ_CP013184.1|WP_065364012.1|3412859_3414062_+|MFS-transporter
MNICVPLPTASSRLPVWRLLAFTLAGFIAIVTETLPAGLLPQISQGLGISEAMAGQLISLYALGSVAAAIPLIAATRSWRRRPLLLLAIGGLLLFNSLTALSTHYLLTLAARFAAGMAAGLVWGLLAGYARRLVVPELQGRALAVVGVGQPIALCLGVPLGAWLGTRMDWPQIFWGLSLLALLLWFWVRLAVPDYPGQPAHQRQPIARIFLTRGLPQALLVIFVWILAHNILYTYIAPFLASLGLAASLDRALLVFGLASLVGIWFTGLGVDRWLRGLTLCSLAGFALACLLLGIAASQPWLAWLGIGAWGLTFGGAPTLLQTAVADVAGEGADVAQSMLVTIFNLGIACGGMVGGLLLQRYGAASFPWAMAALALVGLMLVWGARSHAFKPGQRSACCA
>NZ_CP013184.1|WP_065364013.1|3414037_3414823_-|DJ-1/PfpI-family-protein
MILILLPHADYDPSESSLPWQAARDAGFAAQFATPLGMPAYADSRLVSLGFGPLNPLLMTPAADLARYHAMTRDPAFCSPLPYAGVDPAAYEGLLIPGGHARGMRSLLESEEVRRIILAFFQADKPVAAVCHGPLALARCIDPASGRSVLHGRKVTALLAGPMELAAWLVTAPWLGRYYRTYDHSVEQEIKAALASPADFLPGPWLPRRDSAEHPERGFVVRDRNLLTARWPGDCHRFANEWASLLQQARDAQPQAQQAER

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Crispr_ID: NZ_CP013184_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_6

3715024-3715179

Orphan

Consensus_repeat	Method
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_6

>merge|NZ_CP013184|6|3715024-3715179|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTGTAGAAGCTGGCTTGCCAGCGAAGGCATTGCCAAGACCGGCGCCAGGCTCAAGGGCCCTTTCGCCGGCAAGCCGGCTCCTACGGATCAGGTCGATACACACGCCCCTG

>NZ_CP013184|6|5|3715024-3715179|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTG	TAGAAGCTGGCTTGCCAGCGAAGGCATTGCCAAGACCGGCGCCAGGCTCAAGGGCCCT
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGTCGATACACACGCCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_041118346.1\|3720545_3721703_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NZ_CP013184.1\|WP_011061445.1\|3704614_3705076_+\|LEA-type-2-family-protein	unknown	unknown	gnl\|CDD\|214812
NZ_CP013184.1\|WP_077934177.1\|3713582_3714638_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP013184.1\|WP_077934176.1\|3712838_3713567_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|214970
NZ_CP013184.1\|WP_077934178.1\|3716592_3718374_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013184.1\|WP_052470412.1\|3707924_3708770_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP013184.1\|WP_015635737.1\|3730462_3731224_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP013184.1\|WP_077934172.1\|3706137_3707928_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP013184.1\|WP_077935022.1\|3724267_3726538_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP013184.1\|WP_011061460.1\|3722812_3723871_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP013184.1\|WP_077934181.1\|3726728_3729200_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013184.1\|WP_077934180.1\|3721722_3722775_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP013184.1\|WP_011061455.1\|3715210_3716458_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274924
NZ_CP013184.1\|WP_077934175.1\|3711429_3712629_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NZ_CP013184.1\|WP_019094960.1\|3729684_3730452_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP013184.1\|WP_077934174.1\|3708793_3709855_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP013184.1\|WP_011061444.1\|3703006_3704446_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP013184.1\|WP_011061446.1\|3705076_3705985_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP013184.1\|WP_077934179.1\|3718366_3720274_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013184.1\|WP_011061450.1\|3709847_3711419_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_041118346.1\|3720545_3721703_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	5.771e-105
NZ_CP013184.1\|WP_011061445.1\|3704614_3705076_+\|LEA-type-2-family-protein	gnl\|CDD\|214812	smart00769, WHy, Water Stress and Hypersensitive response.	3.41777e-29
NZ_CP013184.1\|WP_077934177.1\|3713582_3714638_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.64929e-26
NZ_CP013184.1\|WP_077934176.1\|3712838_3713567_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|214970	smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	5.5778e-12
NZ_CP013184.1\|WP_077934178.1\|3716592_3718374_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.82095e-121
NZ_CP013184.1\|WP_052470412.1\|3707924_3708770_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.56094e-64
NZ_CP013184.1\|WP_015635737.1\|3730462_3731224_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.59824e-59
NZ_CP013184.1\|WP_077934172.1\|3706137_3707928_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP013184.1\|WP_077935022.1\|3724267_3726538_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	3.01519e-51
NZ_CP013184.1\|WP_011061460.1\|3722812_3723871_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.20564e-28
NZ_CP013184.1\|WP_077934181.1\|3726728_3729200_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.47194e-67
NZ_CP013184.1\|WP_077934180.1\|3721722_3722775_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	3.65469e-24
NZ_CP013184.1\|WP_011061455.1\|3715210_3716458_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	7.88121e-132
NZ_CP013184.1\|WP_077934175.1\|3711429_3712629_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	7.79596e-96
NZ_CP013184.1\|WP_019094960.1\|3729684_3730452_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.88077e-64
NZ_CP013184.1\|WP_077934174.1\|3708793_3709855_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.78628e-91
NZ_CP013184.1\|WP_011061444.1\|3703006_3704446_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.00921e-145
NZ_CP013184.1\|WP_011061446.1\|3705076_3705985_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP013184.1\|WP_077934179.1\|3718366_3720274_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.0429e-153
NZ_CP013184.1\|WP_011061450.1\|3709847_3711419_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.55225e-168

>NZ_CP013184.1|WP_077934177.1|3713582_3714638_-|ABC-transporter-substrate-binding-protein
MTLAATLPTSAAQPELEQIWFTRCPVPTASGIAYKLGWLSEEFAADGLPVATLQEARQLGHHHYDHQLPGLFREGGNVPALAARAAGSPSRLIGLTWIEEWQTLLVRPDSGISRPEHLKGKRLALPAWGENRPGSIARAMSLHGYKGALSLAGLGFDDVQLVEVALQDQERAASPQEGLQRLWSGLDYLVRGEVDAVYVKGAAAADAARRLGLVVGIDLDLVAEPRYRINNGTPRPITVHQSLLDNHFDLVVRFLAQTLRAADWAAHNRPALNAILEEETRAGSAGVNEAYRGDFHTTLAPDLSPQRLEFLDIQKNFLYRHGFLERDFAIADWVDPRPLHAAHELLAQRRA
>NZ_CP013184.1|WP_077934176.1|3712838_3713567_-|class-II-aldolase/adducin-family-protein
MTVLINEQPITQELQAFIDQVLLEAEQAFTVFRETQTITANGTVGFIERVPGQELLVSVNYGGPWNYRKPLQATVTDFAGKVILGQGKGGLGRYTKLFQQHSDITTVSHVHSPYLGAWAQTHRTLPFHYVPVQRYQLARELPVYIDRRQPEVDFILDSIAQNPFNLAILEANGGSTVWGKQGLRATAEFILLLEEGAQLQLLADALGGSRPYGPGVLTQQWKMSGLYERATELGLVPAIDRR
>NZ_CP013184.1|WP_077934175.1|3711429_3712629_-|LLM-class-flavin-dependent-oxidoreductase
MAVKILWYLTTPDGPYPWEPEGRWNTDFQHLKQLAVASDRLGYYGSLLGSSPNESLAVSAALIDATQRLRFLVAQHPGELSPAVLAKWALTFDQFSNGRLLFNVVNGSDAGLATLGVHYPHDERYDFSLEYWRAFQGFYAGDTDGYDGRYVKLAPRSPAAAGHPLGGWYAPRQRPGIPLWGAGTSGPGVAHSVQLLDVYLSFADTPPKLGEKFRKVAAEAAKIGRELSFGTRLQIIVRETEEEAWAHAEKLLQRTSLQTARASIERQLPPGETLDSFHSDDPQIQRNVEAIRAGRLPKARDLEIYPNVWLGPSLFGFNILGPAAGTYLVGSARQVAERIREYEEQGTSAFILSGFPLIDEAHRVADLLFPLLELDHGFEVPRLGATLAARQPAKATEQA
>NZ_CP013184.1|WP_011061450.1|3709847_3711419_-|ABC-transporter-substrate-binding-protein
MSEAFSRRVFLGHSLAAGGGLLLGSSLLSGCDNGAAPGAAPLLPGTPVRGGRLRVGIIDGDQSGNLDAHKPVGGGIIRGWALYSKFWEWNPDVSTRLALAEFAEPNADASVWTIRIKPGLEFHHGKSIGADDMLFSILRLTDPQLASPFAGLVGAIDRQALRKLDQRTIEIRFKQGQSFFPLDETLISFGAIVPTDYHPQTNPVGAGPYRLKRFIPGQRSLYSRFENYYKPGQPYADELEIIEFKDQVSRAAALRAGQIDVASGVQAEHSALLKADPRLRFYASPSTSFTGFNLNLAKAPFQDVRVRQAFRLLADRQELVDRGLNGFGRVANDLYSPHDPTYNHGIAQRPHDLEQARALLRQAGQSDLRVELTTTPGPGVNAALVFAQQAKRAGVEVKVTQVDASVFNGPQREQWLLSPGATPARGFLASALHNDAPQAIYNRSNFHDPRFTQLYQQALAQPDLQLRRQWVHEAQAIQHQRGGLLIWGFNDVLDAASVRVGGLVPEQTTFASWRFDEMWLNHA
>NZ_CP013184.1|WP_077934174.1|3708793_3709855_-|ABC-transporter-permease
MPDTCRNTPRTPAWLSWFVGRLGYGLLTAWVISLVVFIATQALPSDPARVILGPDAPLESILTLQRQLGLDRPLLEQYLHWLSQTLEGDLGQSLDSSAPVADVLFARLGYTLALLAGVIALVVPAALLLGVTLALRRDSRLDRWSLSLLIFLKATPGFLLAIGLVLLFSMPHMDLLPAVSILDPQLALWRQLQFLVLPVLALSLSALPYLTRMVRAAMIEALESDYVIAARLRGIPEWRIVWRHTLANALVPAVQGLALTLRTLIGGALLAEVVFSYPGIGTALNSAIQMRDLPMIQAIVLVITLGVVLINLLADLATVLLTPKLRTARRAGLIRRNRRGLQPWWRRSAPKAP
>NZ_CP013184.1|WP_052470412.1|3707924_3708770_-|ABC-transporter-permease
MNDLRISRWRLWLGEPQTRKGAFITLLVVLLALFGPWLAPHGSTDMLGPVYGAPAAGAWLGHDFLGHDVLSRLLSGGLSVLWMSLAAASIALLVGSALGLLAGLSRRRLDTLISWLADVSLAFPDLILVLLIVSMLGRAPWLIVLTVAIAFTPGVVRLARGSAVAVAGQEFVEAAQMMGYSRWRILSGEILPNILTPLLVHFGNMLTWGVGMLSGLSFLGYGVAPPAADWGLMINENQAGLLVQPWAVLAPALLIGVFAYGTNILAEGIGRSQARIGEKGP
>NZ_CP013184.1|WP_077934172.1|3706137_3707928_-|ABC-transporter-ATP-binding-protein
MNAVVEVTREARVLQVEGLRVELAGGVEVLSGVGFSLAAGEILGLVGESGSGKTTLATALLAHARRGARIVEGRVEVAGQSLLDLSAQDLRRARGGLIGYVAQDPATALNPALRIADLLEETLAVHPSHLDRHGRQQRIRDTLKDVGLPADREFLRRFPHQLSGGQQQRVMLALAFVLRPRLIVLDEPTTALDVTTQAHILGTLRHLCKSLGVAAIYVSHDLAVIKDLVDRVLVMYAGRIVESASREALFRQPAHPYTRGLLAAIPDVGQRRPLLAIPGQAPAPGQRPAGCAFAPRCPRQRAQCTAGEPLLQGLAADVQVACIDPYRQALPMPAPVVAVQAAVSGSERRPLLEVQGLNLAYDRQVLFDVSLQVVAGECLALVGESGSGKTSLARALAGLGEHAEGRVRYAGQPLSLSARQRSKGLRHQIQYIFQNPYRALNPRHTLYQTLSAPLEHFFGIRGAEARARVHAVLQRVSLSPALADHYPHSLSGGERQRVAIARALVCEPKLLICDEVTSALDVSVQASILALLRQLQDEGLTLLFVTHDLGVVRAIADRVLVLKQGRVVEQGAVDAVLDRPEHIYTRTLLENSPRLG
>NZ_CP013184.1|WP_011061446.1|3705076_3705985_-|glutaminase-B
MQDLLNQILDEVRPLIGQGQVANYIPALADVPANQLGIAVYGNDGQVFSAGDADTPFSVQSISKVFSLVQAIGHSGEAIWERLGHEPSGQPFNSLVQLEFERGRPRNPFINAGALVICDINQSRFAAPALSMRDFVRRLSGNLQVMVDGRVAESEYQHRARNAAMAYLMQSFGNFHNDVEAVLRSYFSHCALRMSCVDLARAFCFLANDGFCKHSGEQILTRRQTQQVNSIMATSGLYDEAGNFAYRVGLPGKSGVGGGIVAVVPGQFTVCVWSPELNSAGNSLVGMAALELLSQRIGWSVF
>NZ_CP013184.1|WP_011061445.1|3704614_3705076_+|LEA-type-2-family-protein
MRRLIALTLVLLSLSACALLPNRDPLAINVVGIEPLPSQDLEMRFAVKLRLQNPNESPIDYNGVALDLEVNGRPLASGVSDQQGHIGRYSEDILVIPVSVSAFSVLRQTLGLSQTQSLDNLPYVLRGKLAGGLFGTQRFIDRGQLSLSNPGAW
>NZ_CP013184.1|WP_011061444.1|3703006_3704446_+|purine-permease
MTAPDRSPPRYKSDLIYGLNDRPHFSAAIFAALQHVLASFVGIISPTLIFGGVLGLESELPYLISMALFVSGLGTFVQARRLGPIGSGLLCVQGTSFSFISVLLSAGFMVKGRGGDTNEILSTIFGICFVAAFIEMFLSQFIGKLRKLITPVVTGTIITLMGLSLIKVAVTDMAGGYGASDLGAASNLGLAALVLLTIVVLNRFNHPMLRLGSIVIGLTLGFVVAWMLGRVDMAAMPEVPLVSVPVPFKYGFSFDLIAFIPLAVIFLISPLEAAGDLTANSMISQQPVKGPLYIKRIKSGLLADGFNSAVAAVFNSLPMVTFAQNNGVIQLTGVASRYVAYFIAGLLVLLGLFPVIGAVLQLMPKPVLGGATLIMFGTVAVAGIKILAEAGLHRRNVLIVAISLGMGLGVAAVPEVLRELPKALHNIFESPITVGAFCAIFLNIFLPEEFLELEEDEFDPEAATLKVMQDPDMSGKANS
>NZ_CP013184.1|WP_011061455.1|3715210_3716458_+|acyl-CoA-dehydrogenase-family-protein
MSSVQALPVTPVRVLGSEAEAIAVAREIATEIAAIAADSQANGQLPRRQAQLLSDSGLTAIGVPKAFGGLGASVATIVETVRLISVADGGVGQLLQIHNVMLRGIFNGYPDAVRDRVVSDVLAGKRLGNALAEIGGKNKFALKTRIERRADGKLILNGSKFYSTGSYLAEWISLTAASEEGGAGVLLNRNAPGLTLVDDWHAFGQQNSVSGTVLFDNIELDEDFVSPRKGPMKRTGLTFPQILHAAIDTGIAAGALGAAVDYLKQHARPWVESGVDHASEEPHIIKQIGEYAVALRAAESLLRDAARVFDEHEQDPDNKELQDQLILSVATARAHSDSASLKISSDIFSLLGASSSLSKWNLDRFWRNARVHTTHDPIRWRLHHVGNYYLNGVDPGEYTAILNAKEQQGATRPAP
>NZ_CP013184.1|WP_077934178.1|3716592_3718374_+|ABC-transporter-ATP-binding-protein
MIEKHPLLRALAIYREVPWRFTLVALLYVAVNLGLVWQQWLIGHAVNDVSSGQAVKHLADGSLDASLGRYWLWLLLAVALGRGLLQYAATVLSLVLSQELLTRLRERILQQVQGLHLGYHWQHGMGEMITRTTRDADKVRDALISFWRQVVETPLVVLATVGLLAWYSPWLAVVPLLLTACGLWIFVRQTEHLVSLDRAVGAAYDRVNQDLSEGIGGVRVIKSFALEHSRIQGFAAQVGLFAEHARRALAYSSSRIPLPQAVVALSHVWILVYGAHQVAARQLGIGELVSALLIVTTLVFRIEGIGRVMQTFADARSSAERIWQLLDEPLHIRSGNARLPQAPLGLRLEGVSVSAPGGGRKILDDCSLSLEPGEVVALVGATGTGKSLLASLLPRLTEAGAGRVLLGSELSGWQDVRDLDLQQLRRRVHVVPQESFLFSDTLAANLRLTAPDASHRQLRQGLALAAAEDVLERLPQGLDSRLGDRGVTLSGGQRQRLSLARALLGEPDILCLDDATSALDAISERQVLDNIRQLRRDQGRATTLLVISSKLSTILLADRVLLLQDGRIRASGRHAELLKTNAHYRDLLGVDHG
>NZ_CP013184.1|WP_077934179.1|3718366_3720274_+|ABC-transporter-ATP-binding-protein
MANPIAGKALSDIEIEEMLARQALDRSMLSRLLPLLRPIRGPILTVIGIELLLVFTVFLRPWFVRELLDRGLVPDQGHWLLDESLVLWLGLGLAASWLGRFVLAGLSQFVAGSAAIRVLNDLRVKVFAHIQALSVSYFDQTRAGRIISRADRDVDSLEPLLIQGPPELLGALLRCGLAALMLWRIDPRFFLSLAATVPLLALATWGFKRISQRNWARVAENRSRFTAHLVESVSGARMLQQCGQQEPNLQRYRGLLDDFNQALIRGSLRSSWFAPFTALLSTAGMAALLLVGGYGLADNQISVGQMAESLFYVFLFLGPLQELSDLFERYATGSASAQRIFLLLDTRPQVLDPAQPQRMQRARGEVGFEQVRFAYDPRSKNAVIQNLDLQIKAGEVLAIVGPSGHGKSTLVQLLTRFYDVQGGAVTLDGVDIRHLAQHDLRRAVGVVLQDNVLFSGTILDNLRLAAPGADDATLIAAARELGADEVLERLPHQYHSEVGPLGGHLSHGQRQLVCLVRAYLANPAVLVLDEATSAVDIHTERRIQRALRRLCQGRTAIIIAHRLATIRDADRIAVIRHGQLVEQGPHQQLIRQSGAYAALYQAYLRSADQPGGANPAAPFAGKPAPATAPPISRQL
>NZ_CP013184.1|WP_041118346.1|3720545_3721703_+|LLM-class-flavin-dependent-oxidoreductase
MSTEFFWRLPLGTDGPQLSTDKHNRGNPHPRAGHIAPGRLANGEPDGFTYIDYIAQVAKAAELAGFEGALLPTGPEPWVVAAALARETRRIRFLIAFQATWTLPAYAAQQAAILQNLSHGRLDWNIITGGNPVSQRANGDYLDHDRRYQRTGEFLDIIQGLWQNERFSYDGDIYQLENGALPPGLQQERKPGVYFSGFSDAALDVAARHADVYLNWAEPIDQLKPHIERVRELADKQGRTVRFGLRVDLFARETEEQAWADLRRQFDKLEGKGSLIAKNFTSGSDSVGAARQTAYHQNVDRFDDLILGPNLWAGFAKAKPGPTVGLVGSHQNVAERLAEYRDAGFSTFILAGNPHLEEALRIGQEVLPLVQQRPVAQATPLQARA
>NZ_CP013184.1|WP_077934180.1|3721722_3722775_+|ABC-transporter-substrate-binding-protein
MSHPLDTLWYTRCPVPTGLGIAVQKGWLQESLGALGTQVQSLRESSDQAVRESHFDHSLRNSVRHGGSIPALWARAQGRETRLIGLSWADEVQLILTRADSGIHRIKELKGRRFGLPDWAGAQIDFTRAQALRGLENALGLDGLQVGDLQLVNYRYGGTFSDPQVQTLADTPVSAQPSSGRNLELQGLLRGEVDAIFLKGASAARHAHEFGLRTLIDTGAHPDPLIRCNNGTPRTLTVDSHLLEQHLDVATGILGAVLRAEDWARHHPEDTRRYLARETNSSEYWTSAAYGEDAHLRLRTGLEEQAIDALQDFSAFLRRWRFIPQQVDVRQWIDRRPLDALLATPTALAG
>NZ_CP013184.1|WP_011061460.1|3722812_3723871_+|ABC-transporter-substrate-binding-protein
MSKSLDTLWYTHSPVPTGLGIAVQSGRLAEAFLPFGTNIQSLRESSEREVREAHYDHHLQNSVRHGGNIPAIWAYSSGVQTRVLGLSWSDEVQLILTTAESGVKSIRDLKNRRFGLPKWANVQIDFTRAQALRGLENALRLEGLEVADVELVDYPYGGTYSDEQKQHLYGSEVSLGVTRFSRRNNELIGLLRGDIDAIFLKGAHAVHLANEFGLQVVVDTGSHPDPLIRSNNGTPRTLTVDTHLLREHFDASVKIVDTVLRTEQWAWANPEETRRFLARELNTSEYWVAAAYGEDAHRRLRTTLDARSIEALQDFTDFLHRWQFIPRRFDVREWIDFSVLETVIGSTSRVAV
>NZ_CP013184.1|WP_077935022.1|3724267_3726538_+|TonB-dependent-receptor
MHKLNPITKSLWLALALTGGTFSQGLLAAETTGTDTTGNSSEPALKTVTVTAQHREETLQEVPVAVSAVQGTSLVTDGVRNMGDITTFIPNASAKNPDGDGRPRWYIRGLGTGDTGAATVFPVGIYADDVYLNAPIAGGGPLFDLERIEILRGPQGTLYGKNTTAGAVNVISKKPTFDTDGYGTLGIGSKSERILNGAIGGALVDDRLAARLSLYSEERDGFQKNLTDDHTYGDVDKKAVRLQFLAKLNPDLDALLKIHAREYKGDGSNGSLPVGRYYNVGYQRPDGRNIALNVNEDAKLDHDGTSLTLNWRLGDYTLTSISAYDYIRGQSTSDADYTPYEVNGAAISDNRYNQYSQELRLASPQQETLRWLAGVHYFHEDLDSSAKRLITPGPTPNGTGSNQTGGATDFRDLNYQHTTDSYALFGNLTYDFTDNFTVTGGLRWTQEKKDIDLDLTQLTRATANGPLIPLGAAGSNGSRDESKTWEAWTYDLTPEYRINDNVRVFLRYAHGFRSGGFNTGLSTSLAQLTTVDPEKLDAYEIGLKSEWFNHRLTANANVFYYDYSDIQVNLLTVNNGVLTTALTNGAKGKVKGAELELEGQPTDYLHLRAAISFLDTEYTDFKNTNPNTGAVTGDYSGNSFVRSPRNVVSLGADYTIPLEIGGKLVAGGDVSFRDKEYFLADRQSSADKTLSQPHYTLANTRLTWFSPDEKLSVTGFVNNLTDRRYQVHGRPNGTLGQYVITYGDPRTVGLSVTSRF
>NZ_CP013184.1|WP_077934181.1|3726728_3729200_+|TonB-dependent-receptor
MFHRNPLAGAVALVVGSLAVPAFAAQTSSNAPGASADHLDTVVVLGTRRSDVTALESAAPVDVLSAQQLQQTGASDLSGALTALSPSFSYPQSPQGAFAGSIAQGASLRGLASDQVLVLVNGKRRHTSANVTRQSLVNGRGAAAVDLSLIPLSAIERVEILRDGAAAQYGSDAIAGVINIVLKEKDDGGNLGYRFGGYDKGDGLQRKLSGWKGLSLPNDGFLTLSFDAGSQDPASDTNPDNRIFYPGSTSTNTPREQNNRYRTWRWGSGNVSDQYNFAANSEFGLGEGLTAYGFATYSHKNTDAEGFFDPPTTLRNNYGSDALQRYPDGRLPITRYSLEDYALTGGLRYEDERLGKFDLALNHGDNSLKSADRNAINPSWGEASPAKIYTGKREADQTNLTLDWVRDFPTDLLFKPLTLSAGLAWRQENYELSAGEAAGWQNGPLFNTVDPVTGRRIPGYYSGITQVDAATLERKVWGAYIDVEGQVTEKFQAGVAVRTEHYSDFGDTTNGKLSLRYDFTPQLAARATASTGYRAPSLVQSGLSSFSVQVVEQPPGSGNYVEVQQRTLRADSPEAKLLGGKALKPEESTNYSLGLVWRPLANASVTLDAYRINIDNRITLSDQLPASVVTPIFAGTPYANIQSAAFYTNVADTRTDGVELTGNYQLDLQQWGRLNLSSGYSQNNTRITALRDVGNIAGSQIVGRTTQGLIEDGTPKNKLTLSANWLYDSWGLTLAQRRYGQWKSLNASNPTLDQTFSAQWVTDLDISYHFDKALKLSVGAINLFDTHPDKASGAQLYGVPKYSITSPEGAQGAFYYTSVSYDF
>NZ_CP013184.1|WP_019094960.1|3729684_3730452_+|ABC-transporter-permease
MAHSLRCTLTSLTWLVSPLALLLLWTLVAQAGIFPRNLLVPPAQVLHTFETLLASGELLEHLHNSLSRLGLGFALGALGGLVFGVLMALSKTVEAYCAPLFHTLRQIPSIALIPMFVLLLGIDETFKIVIVAKTAFFPVALAASEGVKAIPRSYFEVADVYRLRWPTLVRQIALPAAAPPIITGLRIGLTRCWVVLVATELLAADSGLGQMIEMARQMLRIDVVMVGIVVTGVIGFALDFSFRRLEQRVLRWQTR
>NZ_CP013184.1|WP_015635737.1|3730462_3731224_+|ABC-transporter-permease
MTTLLAKFRGLLLPLLLIGGWEYLSRQDAAGAYAFVPLSTIASALLELLGNGELPVNLLASLGRASGGLLLGTLAGVMLGALMALSTLANRLIGPLFHSIRQVPMLGWIPLIAMWFGNGEFSKMLIVSLAAFYPMVLNTYQGFCQVERRYREVGQVLVLNPAQRLRHILLPAALPSIATGLLQALAFAWVTAVGSELFLSSGAGLGNLMMNAEAGSRMEVIVLCVLCIGLCGYLMTLLLTLLSRRLLRWRPTR

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Crispr_ID: NZ_CP013184_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013184_7

6495118-6495279

Orphan

Consensus_repeat	Method
CCGGGAATTGTGCAAAACCGCGCCGGCCTCTTCGCCGGCAAGCCGGCTCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013184_7

>merge|NZ_CP013184|7|6495118-6495279|CRISPRCasFinder
CCGGGAATTGTGCAAAACCGCGCCGGCCTCTTCGCCGGCAAGCCGGCTCCTACAAGGCATCGGTGCATTTCCCCTTGTGGGAACTGGCTTGCCAGCGCACGGCTGCGCCCGGGAATTGTGCAAAACCGCGCTGGCCTCTTCGCCGGCAAGCCGGCTCCTACA

>NZ_CP013184|7|6|6495118-6495279|CRISPRCasFinder
CCGGGAATTGTGCAAAACCGCGCCGGCCTCTTCGCCGGCAAGCCGGCTCCTACA	AGGCATCGGTGCATTTCCCCTTGTGGGAACTGGCTTGCCAGCGCACGGCTGCGC
CCGGGAATTGTGCAAAACCGCGCTGGCCTCTTCGCCGGCAAGCCGGCTCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013184.1\|WP_053160273.1\|6502193_6503171_-\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP013184.1\|WP_011063912.1\|6495358_6496129_-\|electron-transfer-flavoprotein-subunit-beta	unknown	unknown	gnl\|CDD\|224997
NZ_CP013184.1\|WP_015637299.1\|6479998_6483016_-\|sarcosine-oxidase-subunit-alpha	unknown	unknown	gnl\|CDD\|273584
NZ_CP013184.1\|WP_011063909.1\|6490778_6491879_-\|glycine-betaine-demethylase-subunit-GbcB	unknown	unknown	gnl\|CDD\|99811
NZ_CP013184.1\|WP_011063906.1\|6487010_6488051_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
NZ_CP013184.1\|WP_019094045.1\|6486169_6486910_-\|conjugal-transfer-protein-TraX	unknown	unknown	gnl\|CDD\|368639
NZ_CP013184.1\|WP_015637308.1\|6499422_6501483_-\|dimethylglycine-demethylation-protein-DgcA	unknown	unknown	gnl\|CDD\|240085
NZ_CP013184.1\|WP_077934895.1\|6488430_6489876_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP013184.1\|WP_041120175.1\|6504263_6504773_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP013184.1\|WP_011063916.1\|6501498_6502029_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198057
NZ_CP013184.1\|WP_011063902.1\|6483012_6483315_-\|sarcosine-oxidase-subunit-delta	unknown	unknown	gnl\|CDD\|226761
NZ_CP013184.1\|WP_011063903.1\|6483329_6484580_-\|sarcosine-oxidase-subunit-beta-family-protein	unknown	unknown	gnl\|CDD\|273585
NZ_CP013184.1\|WP_019095253.1\|6503406_6503808_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NZ_CP013184.1\|WP_015637306.1\|6496138_6497359_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP013184.1\|WP_019095254.1\|6503916_6504267_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|100114
NZ_CP013184.1\|WP_011063910.1\|6492170_6493466_+\|glycine-betaine-demethylase-subunit-GbcA	unknown	unknown	gnl\|CDD\|226985
NZ_CP013184.1\|WP_011063908.1\|6489872_6490700_+\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143604
NZ_CP013184.1\|WP_015637307.1\|6497358_6499308_-\|dimethylglycine-demethylation-protein-DgcB	unknown	unknown	gnl\|CDD\|371832
NZ_CP013184.1\|WP_011063921.1\|6504828_6506166_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP013184.1\|WP_011063904.1\|6484603_6485857_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|237280

Protein	Function_ID	Function_description	E-value
NZ_CP013184.1\|WP_053160273.1\|6502193_6503171_-\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	9.3103e-126
NZ_CP013184.1\|WP_011063912.1\|6495358_6496129_-\|electron-transfer-flavoprotein-subunit-beta	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.61446e-31
NZ_CP013184.1\|WP_015637299.1\|6479998_6483016_-\|sarcosine-oxidase-subunit-alpha	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	0
NZ_CP013184.1\|WP_011063909.1\|6490778_6491879_-\|glycine-betaine-demethylase-subunit-GbcB	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.66237e-134
NZ_CP013184.1\|WP_011063906.1\|6487010_6488051_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.35185e-157
NZ_CP013184.1\|WP_019094045.1\|6486169_6486910_-\|conjugal-transfer-protein-TraX	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	4.70304e-48
NZ_CP013184.1\|WP_015637308.1\|6499422_6501483_-\|dimethylglycine-demethylation-protein-DgcA	gnl\|CDD\|240085	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.	0
NZ_CP013184.1\|WP_077934895.1\|6488430_6489876_+\|cytosine-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	2.7328e-96
NZ_CP013184.1\|WP_041120175.1\|6504263_6504773_-\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.75202e-39
NZ_CP013184.1\|WP_011063916.1\|6501498_6502029_-\|hypothetical-protein	gnl\|CDD\|198057	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	4.02187e-06
NZ_CP013184.1\|WP_011063902.1\|6483012_6483315_-\|sarcosine-oxidase-subunit-delta	gnl\|CDD\|226761	COG4311, SoxD, Sarcosine oxidase delta subunit [Amino acid transport and metabolism].	1.79505e-48
NZ_CP013184.1\|WP_011063903.1\|6483329_6484580_-\|sarcosine-oxidase-subunit-beta-family-protein	gnl\|CDD\|273585	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form. This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. [Energy metabolism, Amino acids and amines].	0
NZ_CP013184.1\|WP_019095253.1\|6503406_6503808_+\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	8.64507e-11
NZ_CP013184.1\|WP_015637306.1\|6496138_6497359_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.36223e-74
NZ_CP013184.1\|WP_019095254.1\|6503916_6504267_-\|hydroxyisourate-hydrolase	gnl\|CDD\|100114	cd05822, TLP_HIUase, HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits.	3.33923e-38
NZ_CP013184.1\|WP_011063910.1\|6492170_6493466_+\|glycine-betaine-demethylase-subunit-GbcA	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	7.03259e-100
NZ_CP013184.1\|WP_011063908.1\|6489872_6490700_+\|carbon-nitrogen-hydrolase	gnl\|CDD\|143604	cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.00113e-118
NZ_CP013184.1\|WP_015637307.1\|6497358_6499308_-\|dimethylglycine-demethylation-protein-DgcB	gnl\|CDD\|371832	pfam11982, DUF3483, Domain of unknown function (DUF3483). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with pfam02754.	1.5228e-116
NZ_CP013184.1\|WP_011063921.1\|6504828_6506166_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.19251e-163
NZ_CP013184.1\|WP_011063904.1\|6484603_6485857_-\|serine-hydroxymethyltransferase	gnl\|CDD\|237280	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.	0

>NZ_CP013184.1|WP_011063910.1|6492170_6493466_+|glycine-betaine-demethylase-subunit-GbcA
MDVTATLSLGDPLEPARKATAQMLQERERTFSLPQPFYCDERLFDIDMQEIFQKEWLIAGMTCEIPTKGNYITLQIGKNPIIVIRGADGVVHAFHNVCRHRGSRLCTSDKGKVAKLVCHYHQWTYELDGRLLFAGTEMGADFDMKQYGLKPVNVKTAGGYIFISLAENPPAIDDFLATLAHYMEPYDMENTKVAVQTTLHEKANWKLVLENNRECYHCGGSHPELLKTLLEWDDVTDPRADQAFKDHVAASAAAWEAEKIPYAHASFGLRNRIVRMPLLKGTVSMTLDGKQGCAKLMGRIKNPDLGSMRILHLPHSWNHCMGDHIIVFTVWPISAQETIVTTKWIVHKDAVEGVDYDVERMRQVWDATNAQDRRLAEENQRGINSTAYQPGPYSKTYEFGVVNFVDWYSERMLSNLGAEPAPYLKGVPVTG
>NZ_CP013184.1|WP_011063909.1|6490778_6491879_-|glycine-betaine-demethylase-subunit-GbcB
MSNTFLNPVTTQTWANGRHIVRCVKVIQETWDVRTFCFMADQPIMFFFKPGQFVTLELEIEGQPVMRSYTISSSPSVPYSFSVTIKRVPGGKVSNWLHDTLHEGQELAVHGPVGLFNAIDFPAPKILYLSGGVGITPVMSMARWFYDTNANVDMVFIHSARSPKDIIYHRELEHMASRIDNFSLHLICEKHGLGEPWAGYRGYLNHKMLELMAPDFLEREVFCCGPTPYMSAVKRLLEAAGFDMARYHEESFGATPAEARADAVEHAEQAAEAPEPDLADLHQVEFTASGKSIRVAPGETVHAAAAKLGLMIPKACGMGICGTCKVLKLGGEVEMEHNGGITEEDEAEGYILSCCSVPKGDVRVEF
>NZ_CP013184.1|WP_011063908.1|6489872_6490700_+|carbon-nitrogen-hydrolase
MIPQASLKVACQQVAPRIGDLKYNRALGAEAIRQAAARGAQVVVLPELVQSGYVFSDRNEALALSESLDGPTLSLWKTLAEELQVVIVGGFCERLDQERVANSAALVEPEGRLTLYRKAHLWDRENLIFTPGDEPPPVVATRFGPIAMMICYDLEFPEWVRLPALAGAALLCAPVNWPDGPRPLGERPAEMVRVQANAAVNRMFIAACDRCGEERGVNWVGGSTLVDADGYPLAGRDRESAEQLLLAELDLTQAWHKSISEHNHVHLDRRPALYQ
>NZ_CP013184.1|WP_077934895.1|6488430_6489876_+|cytosine-permease
MTTSSCVTEKAQPPGLAIETRSIDYVPRNERHGKVWHQGPFWFTGNFVLTTMVTGFTGAALGLALQYAILAIVIGVCLGTFCMAFHANQGPRMGLPQMIQSRAQFGLRGAIVPFTAVVFVYIGFNVFNVILATDAINTVIPGARAPWYTLMIAVAVLIAVIGHDLLHTVQRWLTYVMISVFAVLTVSALLTLQADSALADPQFSWSAFLIQLSAAAGYQISYSVYVSDYSRYLPHQTPSRQVIFWTYLGAAGSALWLMSLGAFLASALPSPDAIASVREVGNRVIPGFGTFTVLIAVPALVGIMAVNCYGAMLTGISAIDGFKSIKPNLKSRVCGIVLVAVVIFLIAMNIPESYLGSFNTFVLLMLYFLVPWTAVNLADFYLVRKGRYAISDIFNHTGIYGRWSSAGLLAYFLGLLAMVPFMSLSFFQGPLSQALGGADIAFVVGLAVAALVYWALTRNLDLDAERLAIQASEQQLEGGAQ
>NZ_CP013184.1|WP_011063906.1|6487010_6488051_+|low-specificity-L-threonine-aldolase
MTDKSQQFASDNYSGICPEAWAAMEQANHGHERAYGDDQWTARASDHFRKLFETDCEVFFAFNGTAANSLALSSLCQSYHSVICSETAHVETDECGAPEFFSNGSKLLIAGTQNGKLTPESIREIALKRQDIHYPKPRVVTLTQATEVGSVYTPEEVRAISATCKELGLNLHMDGARFSNACAFLGCTPAELTWKAGVDVLCFGGTKNGMAVGEAILFFNHKLAEDFDYRCKQAGQLASKMRFLSAPWVGLLENDAWLKHARHANHCAQLLAQLVADIPGVELMFPVQANGVFLQLSEPAIAALTAKGWRFYTFIGKGGARFMCSWDTEEDRVRELAADIRTVMSA
>NZ_CP013184.1|WP_019094045.1|6486169_6486910_-|conjugal-transfer-protein-TraX
MRDAMLKPDTARRDGALDALKWLALLSMVLDHLRYVGLSLDWFYVPGRLAFPWFCLAMAVNLTRARDEIDRRPGPWRYLGWLLLFSLLSEIPYRLFIPGPDTLNVLPTLALGLLVARGWQRRRGLDLGLGLLALLLAVVFSERLMFGAFGVLLPLALVLVLRRPWYFSLLPGALCLAANQWETLFPAARLGNQVATCGIAACLLAPWLGLMLLRGLRGRSVPAMRRWAYLLYPAHFLLLLALRAAL
>NZ_CP013184.1|WP_011063904.1|6484603_6485857_-|serine-hydroxymethyltransferase
MFSKQDQIQGYDDALLAAINAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADYANVQPHSGSSANSEVYLALLQAGDTILGMSLAHGGHLTHGAKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLILAKANEEIEKKLNAAVFPGAQGGPLMHVIAAKAVCFKEALEPGFKAYQQQVIDNAQAMAGVFIKRGYDVVSGGTDNHLFLVSLIRQGLTGKDADAALGRAHITVNKNAVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCTELAGWICDILDHLGDADVEANVARQVAALCADFPVYR
>NZ_CP013184.1|WP_011063903.1|6483329_6484580_-|sarcosine-oxidase-subunit-beta-family-protein
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAQLYEHAMKLWEGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGIDGELLNTQQVADEIPYLDCSKNTRYPVLGATVQRRGGVARHDAVAWGFARAADALGVDLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDGWVGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTSPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRFHNGALIDEHGAAAVAH
>NZ_CP013184.1|WP_011063902.1|6483012_6483315_-|sarcosine-oxidase-subunit-delta
MLHIFCPHCGELRSEEEFHSSGQAHIPRPLDPNACTDEEWGDYMFFRDNPRGLHHELWIHAAGCRQYFNATRDTVTYEILETYKIGTKPQFTAKAAGEKV
>NZ_CP013184.1|WP_015637299.1|6479998_6483016_-|sarcosine-oxidase-subunit-alpha
MSQTNRLSNGGRIDRNKVLTFTFNGQSYKGFEGDTLASALLANGVDIIGRSFKYSRPRGIFAAGCEEPNAVLQIGATEATQIPNVRATQQALYQGLVATSTNGWPSVNNDMMGILGKVGGKLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDTYDNMNQHCDVLIVGAGPAGLAAALAAARSGARVILADEQEEFGGTLLDSRESLDGKPAAEWVASVVAELQSLPDVLLLPRATVNGYHDHNFLTIHERLTDHLGDRAPIGQVRQRIHRVRAKRVVLATGAHERPLVYGNNDVPGNMLAGAVSTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDASLQVVAIADARHNPRGALVEEARAKGIRILTSSAVIEARGSKHVTGARVAAIDVKAHKVTSPGEWLDCDLIASSGGYSPVVHLASHLGGKPVWREDILGFVPGEAPQKRVCVGGINGVYSLGDTLADGFEGGVRAASEAGFQAVEGVLPKALARLEEPTLALFQVPHEKGTARAPKQFVDLQNDVTAAAIELATREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLNVSIPQMGTTMFRPNYTPITFGAVAGRHCGHIFEPVRFTALHAWHVKNGAEFEDVGQWKRPWYFPKNGEDLHAAVKRECQAVRDSVGLLDASTLGKIDIQGPDAREFLNRIYTNAWTKLDVGKARYGLMCKEDGMVFDDGVTACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATMTLSGPNSRKLLSEVTDIDLDKDGFPFMTWKEGLVGGVPARVFRISFTGELSYEVNVQADYAMGVLEQIVEAGKKYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGMNREDCVREQRKQLVGLKPIDPTQWLPEGAQLVFNPKQAIPMSMVGHVTSSYAHNSLGYSFALGVVKGGLKRLGERVFAPLADGRVIEAEIVSSVFFDPKGDRQNI
>NZ_CP013184.1|WP_011063912.1|6495358_6496129_-|electron-transfer-flavoprotein-subunit-beta
MHSNVISLISIGAHPTSGRPRRAEQDARAVELGLQLAGAQLQVLHAGDVAEPALRAYLGMGLEQLHVLEQPAGADALPALTQYLRHAGAQVVLTGSQAETGEGSGMLPFLLAENLGWPLVVGLAQVESLGDGVAHVLQALPRGQRRRLKVRLPFLATVDNAAPKPRQSAYGPARRGVLETDQVLVVEDELFTGSSLQPAKPRPKRLKVIKAKSGADRMKAATAKASGGTGQVLKGVSPEAGAEAILKLLIEEGVVR
>NZ_CP013184.1|WP_015637306.1|6496138_6497359_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSDIIRRDPRAEWIARNRLHPLHAAMQPAQHSWMGPNGLIRKNPHGIGFIGPNGLKRIDRSGAQQGGSAKRTAAAEVQLPLHQVAQPAFYISVVPDMVGGRLSSHDRDLLGLAHQLAGQDGAVLAVVFGEHKESAFATAGVDRLLVLQGSEFEGYAPEQRVQGLRAVDNQFSPRHWLLPDSRTGGGELGRRFAAALGERPATRVWQVKDGQCIGRAGAGLQDLARPVARLILAAAECAEPVSETRHEALPVELSTSVARSLARIEDLGAVAVDPAAIPMAEAEFIFSGGNGVKDWPLFHQTAAALGATEGASRVAVDDGFMARDRQVGASGIWVTARVYVAVGISGAIQHLQGIGACDKVVAINLDPGCDMIKRADLSVIGDSAEILKALIAAVAAYRNDAKRDAA
>NZ_CP013184.1|WP_015637307.1|6497358_6499308_-|dimethylglycine-demethylation-protein-DgcB
MLNTLLPILLFAAIGLAVLGALRRVAMWRRGRASKVDLIGGLLAMPKRYMVDLHHVVARDKYMANTHVATAGGFVLAAVLAILVHGFGLHNRILGYALLLAATLMFVGALFVAKRRRNPPARLSKGPWMRLPKSLLAFSVSFFVATLPVAGILPENFGGWLLAALLALGVLWGVSELFFGMTWGGPMKHAFAGALHLAWHRRAERFGGGRSTGLKPLDLEDPNAPLGVEKPKDFTWNQLLGFDACVQCGKCEAACPAFAAGQPLNPKKLIQDMVVGLAGGTDAQFAGSPYPGKAIGEHGGNPHQPIVNGLVDAETLWSCTTCRACVEECPMMIEHVDAIVDMRRHLTLEKGATPNKGAEVLENLIATDNPGGFNPGGRMNWAADLNLSLLSDKQSTDVLFWVGDGAFDMRNQRTLRAFVKVLKAAKVDFAVLGLEERDSGDVARRLGDEATFQLLAKRNIQTLAKYRFKRIVTCDPHSFHVLKNEYGAFDGNYLVQHHSTYLAELIGAGALNLGQHKGNSVTYHDPCYLGRYNGEYEAPREVLRALGIEIKEMQRSGFRSRCCGGGGGAPITDIPGKQRIPDMRMQDIRETGAELVAVGCPQCTAMLEGVVEPRPMIKDIAELVADALLEDAAPSKAPASVKPEPAEVH
>NZ_CP013184.1|WP_015637308.1|6499422_6501483_-|dimethylglycine-demethylation-protein-DgcA
MAFEAMFQPIQIGKLTIRNRVLSTAHAEVYATDGGMTTERYVKYYEEKAKGGIGLAICGGSSVVAIDSPQEWWSSVNLSTDRIIPHFQNLADAMHKHGAKIMIQITHMGRRSRWDGFNWPTLMSPSGVREPVHRATCKTIEPEEIWRVIGNYAQAARRAKAGGLDGVELSAVHQHMIDQFWSPRVNKRTDEWGGTFEKRMRFGLEVLKAVRAEVGDDFCVGMRLCGDEFHPDGLSHEDMKQIAKYYDDTGMLDFIGVVGSGCDTHNTLANVIPNMSFPPEPFLHLAAGIKEVVKVPVLHAQNIKDPNQATRILEGGYVDMVGMTRAHMADPHLIAKIKMGQIDQIKQCVGANYCIDRQYQGLDVLCIQNAATSREYMGVPHIIEKTTGIKRKVVVVGAGPAGMEAARVAAERGHDVTLFEKKEAIGGQITTASKAPQRDQIAGITRWYQLELARLKVDLRLGTAADTATILDLRPDVVVLAVGGHPFIEQNEHWGAAEGLVVSSWDILDGKVAPGKNVLVYDTICEFTGMSVTDFIADKGSQVEIVTDDIKPGIAVGGTSFPTYYRSLYPKEVIMTGDLTLEKVYREGDKLVAVLENEYTGAREERVVDQVVVENGVRPDEELYYGLKEGSRNKGQMDVEALFAIKPQPCLSETGEGYLLFRIGDCVSQRNTHAAIYDALRLCKDF
>NZ_CP013184.1|WP_011063916.1|6501498_6502029_-|hypothetical-protein
MAKIAPQLPIEVDSETGVWTSDALPMLYVPRHFFVNNHMGIEEVLGADAYAEILYKAGYKSAWHWCEKEAECHGLEGVAVFEHYMKRLSQRGWGLFKIQDIDLDKGTASVKLEHSAFVYVYGKVGRKVDYMFTGWFAGAMDQILAARGSKIRTVAEQVYGGSEEGHDDGLFVVKPL
>NZ_CP013184.1|WP_053160273.1|6502193_6503171_-|dipeptidase
MSPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATINNIASSQKLIRENSDLVMPVRTTADIRKAKELGKTGILFGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRVGVMCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDAELKFIADHGGFVGVTMFAPFLAKGIDSTIDDYAEAIEYTMNIVGEDSIGIGTDFTQGHGQDFFEYLTHDKGYARRLTNFGKIINPLGIRTVGEFPNLTETLLKRGHSERVVRKIMGENWVSVLKDVWGE
>NZ_CP013184.1|WP_019095253.1|6503406_6503808_+|DUF1311-domain-containing-protein
MKPIFLALLLITTGVQAAEEADNTPCDGVENDVQTLECATYNRTTAEQLLGDNVQSLLERLGTLYGSDKGQLADISAKVKNAQQLWQKQRDADCAMESFPAKPGTKAYTIATNDCLARMSDERSEFIESIAQE
>NZ_CP013184.1|WP_019095254.1|6503916_6504267_-|hydroxyisourate-hydrolase
MNGGLSIHVVDVASGKVAEGMAVRVRRLGGELLCAGRIAGNGLLSELAERSASFGQGVYEVELEVAAFYREQGQALPPVPFLEVLVYRFGLDDPRQHYHLPFKLTAWGVSCFRGGA
>NZ_CP013184.1|WP_041120175.1|6504263_6504773_-|nucleoside-deaminase
MTQILSSIPAGVTELDLHLLRQSIQLAEEAKARGRHPFAALVADRDGKVIASAGNNSMPPEGDPTQHAELAAAALAAKRLSPQALAECTLYTSAEPCCMCAGAIYWTGIGRVVYALSEHELLELTGDHPENPTFSLPCREVFARGQRQIPVFGPMLESEAALAHKGFWK
>NZ_CP013184.1|WP_011063921.1|6504828_6506166_-|purine-permease
MTISRVHPVDEVLPVRQLFTFGLQHVLVMYAGAVAVPLILGNALGLTPAQVVLLINANLLTSGIATLVQTLGFWRFGARLPLIQGCSFIALAPMIMIGKQFGLTEVFGAVIAAGVITIALAPLFSRLLRFFPPVVIGSLITIIGISLMPAAAIWLGGGNPAADDFGAPANLLLGLATVAVTLVIYGKFSGFIGNLSVLIGLLVGSLIAAAFGMTDFAQVSQAAWFELSRPMAFGAPQFSLVPILIMTLAMLVIMAETTGNCLAIGKLTGKPTTQRTLGDAFRADGLSTLLGGLFNSFPYNAFTQNTGLIALSRVKSRFVVAAAGAIMVLMGLFPKLGALVAAVPTPVLGGCAIVMFGMTTVAGIQELSRVPFEGTRNAIVVAVSVSVGVLPMSFPALFAHLHGPLRLVLESGIFLGAITAIVLNLLLNPREAAAQVLAAHVELND

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1354299 : 1458507

104

Pseudomonas_phage(36.54%)

tRNA,tail,plate,holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073698950.1\|1354299_1355121_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.7e-08	33.0
WP_065364552.1\|1355203_1355614_-	SufE family protein	NA	NA	NA	NA
WP_077933415.1\|1355610_1356816_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	4.7e-71	36.1
WP_015634328.1\|1356892_1357927_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_011059519.1\|1357960_1358323_-	ArsC family reductase	NA	NA	NA	NA
WP_077933416.1\|1358560_1360207_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_077933417.1\|1360262_1361462_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_015634331.1\|1361500_1364203_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_011059523.1\|1364251_1365034_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011059524.1\|1365441_1366179_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_011059525.1\|1366382_1367249_+	elongation factor Ts	NA	NA	NA	NA
WP_011059526.1\|1367458_1368202_+	UMP kinase	NA	NA	NA	NA
WP_011059527.1\|1368198_1368756_+	ribosome recycling factor	NA	NA	NA	NA
WP_011059528.1\|1368771_1369527_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	5.0e-18	38.1
WP_011059529.1\|1369526_1370333_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_041751975.1\|1370329_1371520_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_011059531.1\|1371569_1372922_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_072451168.1\|1372996_1375387_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_011059533.1\|1375432_1375936_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_015634334.1\|1375939_1376995_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1377104_1377545_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_011059535.1\|1377541_1378318_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_169892834.1\|1378317_1379445_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_015634336.1\|1379462_1380095_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.4e-28	40.0
WP_053149264.1\|1380164_1383686_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	9.5e-197	38.0
WP_011059539.1\|1383825_1384773_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_077933418.1\|1384906_1386223_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_011059541.1\|1386497_1388129_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.6
WP_011059542.1\|1388134_1388980_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.9e-49	42.4
WP_011059543.1\|1389135_1390425_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-136	59.4
WP_011059544.1\|1390597_1390876_+	cell division protein FtsB	NA	NA	NA	NA
WP_011059545.1\|1390872_1391580_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011059546.1\|1391697_1392597_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011059547.1\|1392701_1393814_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.9e-29	27.4
WP_019093198.1\|1393900_1394746_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_011059549.1\|1394798_1395272_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_015634342.1\|1395268_1396327_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_015634343.1\|1396314_1397064_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-67	52.6
WP_169892832.1\|1397105_1397741_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	48.8
WP_011059553.1\|1397953_1398814_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_011059554.1\|1398920_1399928_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_011059555.1\|1400439_1400763_-	ferredoxin family protein	NA	NA	NA	NA
WP_011059556.1\|1400906_1403486_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.1e-28	24.2
WP_019093195.1\|1403672_1404419_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	7.8e-125	90.3
WP_011059558.1\|1404936_1405287_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.2e-52	89.6
WP_041751978.1\|1405375_1405897_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.6e-21	37.9
WP_077933419.1\|1405893_1406484_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.8e-52	72.5
WP_053149294.1\|1406576_1406780_+	hypothetical protein	NA	NA	NA	NA
WP_015634349.1\|1406784_1407111_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	5.1e-36	67.6
WP_019093191.1\|1407107_1407989_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	2.0e-95	63.0
WP_077933420.1\|1407990_1408596_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	2.6e-70	65.3
WP_077933421.1\|1408592_1409819_+\|tail	phage tail protein	A0A2H4JF09	uncultured_Caudovirales_phage	3.4e-77	72.2
WP_134532553.1\|1409818_1410589_+	hypothetical protein	NA	NA	NA	NA
WP_161466268.1\|1410735_1411038_+	hypothetical protein	B5TK82	Pseudomonas_phage	4.4e-10	44.3
WP_053156567.1\|1411139_1412306_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	3.0e-179	80.7
WP_015634355.1\|1412318_1412828_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.1e-66	73.1
WP_015634356.1\|1412837_1413143_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.2e-18	51.5
WP_015634357.1\|1413284_1415831_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	5.0e-78	35.6
WP_077933422.1\|1415840_1416686_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.8e-77	55.0
WP_077933423.1\|1416660_1416867_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.2e-21	73.1
WP_077933424.1\|1416928_1417972_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	9.8e-150	76.9
WP_077933425.1\|1418078_1419230_+	glycosyl hydrolase	A0A2L0HM30	Microbacterium_phage	2.0e-10	28.5
WP_077933426.1\|1419282_1419864_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.1e-70	67.2
WP_011059562.1\|1419860_1420043_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.9e-22	86.7
WP_077933427.1\|1420042_1421539_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	8.6e-248	87.3
WP_011059564.1\|1421605_1421953_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.7e-53	86.1
WP_011059565.1\|1421949_1422246_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	3.6e-41	89.8
WP_077933428.1\|1422376_1424098_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	7.0e-60	58.5
WP_077933429.1\|1424087_1425332_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	4.4e-173	74.0
WP_077933430.1\|1425335_1426376_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	2.0e-150	78.8
WP_011059569.1\|1426485_1426992_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.1e-73	85.7
WP_077933431.1\|1426994_1427393_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	2.8e-60	83.3
WP_077933432.1\|1427382_1428423_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	2.3e-159	82.7
WP_077933433.1\|1428410_1429010_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	5.2e-95	82.4
WP_015634370.1\|1429025_1430123_+\|tail	phage tail protein	A0A1W6JT73	Escherichia_phage	2.4e-29	40.9
WP_041116261.1\|1430119_1430497_+	hypothetical protein	B5TK82	Pseudomonas_phage	5.9e-12	50.0
WP_015634371.1\|1430547_1431111_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	5.6e-83	79.5
WP_041116263.1\|1431219_1431735_+	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	4.1e-24	49.4
WP_041116265.1\|1432004_1432646_+	hypothetical protein	B5TK60	Pseudomonas_phage	5.1e-64	55.6
WP_011059578.1\|1432815_1433316_+	CinA family protein	B5TK85	Pseudomonas_phage	5.2e-72	84.3
WP_011059579.1\|1433399_1434452_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-113	61.0
WP_011059580.1\|1434460_1434928_+	recombination regulator RecX	NA	NA	NA	NA
WP_077933434.1\|1434968_1436087_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_011059582.1\|1436530_1436725_+	hypothetical protein	NA	NA	NA	NA
WP_011059583.1\|1436725_1437151_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_011059584.1\|1437342_1438053_+	DTW domain-containing protein	NA	NA	NA	NA
WP_077933435.1\|1438036_1438942_-	DMT family transporter	NA	NA	NA	NA
WP_011059586.1\|1439180_1439831_+	response regulator transcription factor	NA	NA	NA	NA
WP_011059587.1\|1439906_1440269_+	diacylglycerol kinase	NA	NA	NA	NA
WP_011059588.1\|1440270_1441197_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003198368.1\|1441316_1442096_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_015634378.1\|1442218_1442914_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_053149360.1\|1443030_1443801_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_077933436.1\|1443928_1444390_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	7.2e-36	48.7
WP_015634380.1\|1444456_1445167_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_077933437.1\|1445249_1445723_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015634382.1\|1445840_1447178_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_015634383.1\|1447499_1449401_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	3.2e-74	33.7
WP_077933438.1\|1449568_1449754_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_077933439.1\|1449822_1451121_-	virulence factor family protein	NA	NA	NA	NA
WP_011059597.1\|1451120_1453769_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_077933440.1\|1454688_1455756_+	DNA polymerase IV	NA	NA	NA	NA
WP_011059599.1\|1455820_1456774_-	hypothetical protein	NA	NA	NA	NA
WP_015634388.1\|1456791_1458507_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2389668 : 2431439

Pseudomonas_phage(51.22%)

holin,tail,integrase,capsid

attL 2387790:2387805|attR 2396509:2396524

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2387790:2387805	attL	NA	NA	NA	NA
WP_058434894.1\|2389668_2390808_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	3.6e-153	70.8
WP_077933682.1\|2390807_2391041_-	hypothetical protein	A0A2H4JA17	uncultured_Caudovirales_phage	4.4e-34	96.1
WP_077933683.1\|2391079_2391460_-	hypothetical protein	NA	NA	NA	NA
WP_077934994.1\|2391601_2391808_-	hypothetical protein	NA	NA	NA	NA
WP_077933684.1\|2391860_2392244_-	hypothetical protein	B5WZW7	Pseudomonas_phage	5.0e-43	67.8
WP_077933685.1\|2392521_2393028_+	hypothetical protein	NA	NA	NA	NA
WP_077933686.1\|2393165_2393396_+	hypothetical protein	A0A1B0VP27	Pseudomonas_phage	5.9e-31	85.3
WP_077933687.1\|2393392_2394871_-	DNA cytosine methyltransferase	A0A2I7RFJ9	Vibrio_phage	4.5e-108	49.1
WP_077933688.1\|2394880_2395738_-	phosphoadenosine phosphosulfate reductase family protein	A0A2K9VK66	Klebsiella_phage	1.9e-29	33.0
WP_141323314.1\|2395759_2396485_+	hypothetical protein	NA	NA	NA	NA
WP_187682872.1\|2396735_2396918_-	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	1.4e-14	64.8
2396509:2396524	attR	NA	NA	NA	NA
WP_077933689.1\|2396966_2397974_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	1.8e-132	69.9
WP_183001582.1\|2398079_2398256_+	hypothetical protein	NA	NA	NA	NA
WP_077933690.1\|2398318_2398804_-	hypothetical protein	A0A1B0VMB5	Pseudomonas_phage	5.2e-61	75.6
WP_077933691.1\|2398885_2399404_-	hypothetical protein	NA	NA	NA	NA
WP_077933692.1\|2399411_2399975_-	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	6.2e-66	70.6
WP_077933693.1\|2399971_2400700_-	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	4.8e-95	74.3
WP_187682873.1\|2400810_2400987_-	hypothetical protein	A0A0S2SY66	Pseudomonas_phage	4.5e-07	54.4
WP_041118604.1\|2400983_2401184_-	hypothetical protein	NA	NA	NA	NA
WP_041118603.1\|2401180_2401372_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.4e-09	50.0
WP_077933694.1\|2401368_2401800_-	hypothetical protein	NA	NA	NA	NA
WP_141323312.1\|2402047_2402308_+	hypothetical protein	NA	NA	NA	NA
WP_077933695.1\|2402611_2402842_-	hypothetical protein	NA	NA	NA	NA
WP_141323310.1\|2403732_2404287_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_077933696.1\|2404430_2404904_-	hypothetical protein	NA	NA	NA	NA
WP_077933697.1\|2404938_2405382_-	hypothetical protein	NA	NA	NA	NA
WP_141323308.1\|2405378_2406221_-	hypothetical protein	NA	NA	NA	NA
WP_077934995.1\|2406675_2406987_-	hypothetical protein	NA	NA	NA	NA
WP_077934996.1\|2407023_2407812_-	XRE family transcriptional regulator	B5TK58	Pseudomonas_phage	7.6e-70	64.0
WP_041118598.1\|2407928_2408132_+	helix-turn-helix domain-containing protein	A0A2H4JF66	uncultured_Caudovirales_phage	7.5e-22	76.1
WP_077933699.1\|2408213_2408636_+	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	6.8e-33	50.7
WP_077933700.1\|2408687_2409590_+	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	8.8e-46	62.8
WP_077933701.1\|2409579_2410365_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.2e-51	50.0
WP_011062057.1\|2410357_2410945_+	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.7e-95	84.6
WP_077933702.1\|2410941_2411556_+	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	7.0e-63	63.6
WP_077933703.1\|2411552_2412239_+	hypothetical protein	NA	NA	NA	NA
WP_141323306.1\|2412397_2412661_+	hypothetical protein	NA	NA	NA	NA
WP_077933705.1\|2413095_2413419_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	6.1e-26	54.9
WP_077933706.1\|2413472_2413688_+	hypothetical protein	NA	NA	NA	NA
WP_077933707.1\|2413684_2413873_+	hypothetical protein	NA	NA	NA	NA
WP_077933708.1\|2413940_2414129_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_141323304.1\|2414306_2414573_+	hypothetical protein	NA	NA	NA	NA
WP_077933710.1\|2414835_2415468_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	5.7e-84	73.2
WP_077933711.1\|2415467_2415989_+	HNH endonuclease	A0A076GD96	Bacillus_phage	1.2e-15	35.4
WP_077933712.1\|2416099_2416561_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	2.5e-57	89.1
WP_015636176.1\|2416547_2417849_+	hypothetical protein	A0A1B1P9C9	Acinetobacter_phage	1.5e-147	59.4
WP_015636175.1\|2417845_2419309_+	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	1.4e-173	62.9
WP_015636174.1\|2419283_2420372_+\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	5.3e-146	71.7
WP_041118581.1\|2420385_2420853_-	hypothetical protein	NA	NA	NA	NA
WP_015636172.1\|2420962_2421679_+	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	6.1e-34	54.5
WP_015636171.1\|2421690_2422638_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	4.8e-127	69.6
WP_015636170.1\|2422689_2422998_+	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	7.2e-08	55.8
WP_015636169.1\|2423001_2423505_+	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	3.1e-77	87.4
WP_077933713.1\|2423521_2423890_+	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.5e-47	78.3
WP_077933714.1\|2423886_2424540_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	6.0e-105	87.0
WP_077933715.1\|2424536_2424953_+	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	1.1e-46	64.5
WP_077933716.1\|2425026_2425683_+\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	6.6e-51	47.9
WP_077933717.1\|2425686_2426067_+\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	7.5e-31	53.5
WP_041118570.1\|2426132_2426384_+	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.6e-18	56.4
WP_077933718.1\|2426380_2429575_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	4.2e-135	44.8
WP_077933719.1\|2429574_2429913_+\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	8.6e-47	75.0
WP_077933720.1\|2429922_2430672_+\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	5.5e-118	80.3
WP_077933721.1\|2430674_2431439_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	8.0e-125	79.7

DBSCAN-SWA_3

2435888 : 2447823

uncultured_Caudovirales_phage(62.5%)

lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077933730.1\|2435888_2436617_+	phage antirepressor N-terminal domain-containing protein	A0A0H5AUF7	Pseudomonas_phage	5.8e-32	50.3
WP_077933732.1\|2437118_2437703_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	3.4e-67	69.1
WP_077933733.1\|2437734_2438178_+	hypothetical protein	NA	NA	NA	NA
WP_077933734.1\|2438226_2441685_+\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	61.4
WP_141323302.1\|2441974_2442670_+	hypothetical protein	A0A2H4IY64	uncultured_phage	4.2e-56	49.1
WP_077934997.1\|2443230_2443986_+	hypothetical protein	A0A2H4JI96	uncultured_Caudovirales_phage	2.4e-57	72.5
WP_077933735.1\|2444044_2444596_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.9e-68	73.6
WP_077933736.1\|2444592_2445114_+\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	1.3e-33	52.0
WP_077934998.1\|2445306_2445834_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_141323300.1\|2446407_2446746_-	hypothetical protein	NA	NA	NA	NA
WP_011060392.1\|2447187_2447823_-	type B chloramphenicol O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.6e-25	42.7

DBSCAN-SWA_4

2574726 : 2578350

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077933771.1\|2574726_2575128_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	3.9e-22	46.2
WP_077935001.1\|2575166_2575349_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	2.8e-12	59.3
WP_047336258.1\|2575491_2576190_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-102	77.6
WP_077933772.1\|2576199_2576670_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.2e-54	66.7
WP_077933773.1\|2576698_2577982_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.2e-170	72.8
WP_077933774.1\|2578002_2578350_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	1.3e-34	61.1

DBSCAN-SWA_5

4033909 : 4107725

Pseudomonas_phage(34.78%)

terminase,portal,capsid,lysis,head,tail,plate,holin,integrase

attL 4100094:4100110|attR 4112486:4112502

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077934274.1\|4033909_4034941_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.3e-98	57.4
WP_015635906.1\|4035466_4035667_-	hypothetical protein	NA	NA	NA	NA
WP_015635907.1\|4035935_4036199_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_077934275.1\|4036551_4037040_+	ATP-binding protein	A0A2H4JFX6	uncultured_Caudovirales_phage	1.9e-23	36.6
WP_077934276.1\|4037647_4038256_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_053152151.1\|4038349_4038991_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015635911.1\|4039045_4039582_+	hypothetical protein	NA	NA	NA	NA
WP_161467364.1\|4039770_4040412_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_011061714.1\|4040536_4041022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015635913.1\|4041138_4042407_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_011061716.1\|4042471_4042939_-	RcnB family protein	NA	NA	NA	NA
WP_011061717.1\|4043071_4043305_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_015635914.1\|4043374_4043878_-	hypothetical protein	NA	NA	NA	NA
WP_011061719.1\|4044074_4044320_+	hypothetical protein	NA	NA	NA	NA
WP_015635915.1\|4044424_4045066_+	hypothetical protein	NA	NA	NA	NA
WP_077934277.1\|4045200_4046169_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_072450120.1\|4046396_4046870_+	hypothetical protein	NA	NA	NA	NA
WP_011061723.1\|4046960_4047098_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|4047159_4047300_-	hypothetical protein	NA	NA	NA	NA
WP_015635918.1\|4047591_4048065_+	hypothetical protein	NA	NA	NA	NA
WP_077934278.1\|4048185_4048347_+	DUF2986 domain-containing protein	NA	NA	NA	NA
WP_011061726.1\|4048790_4049354_+	hypothetical protein	NA	NA	NA	NA
WP_011061727.1\|4049379_4049775_+	hypothetical protein	NA	NA	NA	NA
WP_011061728.1\|4050293_4050980_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_077934279.1\|4050987_4052037_+	hypothetical protein	NA	NA	NA	NA
WP_072441539.1\|4052299_4053793_-	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_077934280.1\|4053828_4055283_-	DUF1254 domain-containing protein	M1H738	Paramecium_bursaria_Chlorella_virus	1.3e-35	28.3
WP_011061732.1\|4055611_4056655_+	hypothetical protein	NA	NA	NA	NA
WP_077934281.1\|4056794_4057175_+	hypothetical protein	NA	NA	NA	NA
WP_041752309.1\|4058061_4058421_-	hypothetical protein	NA	NA	NA	NA
WP_077934283.1\|4058709_4059177_+	hypothetical protein	NA	NA	NA	NA
WP_077934284.1\|4059481_4060444_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_077934285.1\|4060589_4060973_-	hypothetical protein	NA	NA	NA	NA
WP_077934286.1\|4061040_4062018_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_077934287.1\|4062057_4063494_-	cytosine permease	NA	NA	NA	NA
WP_015635927.1\|4063772_4064702_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077934288.1\|4065097_4065640_-	host specificity protein	A0A1B0VMH5	Pseudomonas_phage	8.6e-73	82.7
WP_019095841.1\|4065671_4066199_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_077934289.1\|4068129_4068897_-	hypothetical protein	NA	NA	NA	NA
WP_187682856.1\|4068880_4069042_-	hypothetical protein	NA	NA	NA	NA
WP_077934290.1\|4069444_4070302_+	hypothetical protein	NA	NA	NA	NA
WP_077934291.1\|4070531_4071809_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.9e-112	50.2
WP_077934292.1\|4071801_4072227_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	4.2e-14	35.8
WP_141323195.1\|4073342_4073606_+	hypothetical protein	NA	NA	NA	NA
WP_077935028.1\|4073679_4074123_-\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	3.4e-27	53.5
WP_077934293.1\|4074194_4074746_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	3.2e-67	72.0
WP_077934294.1\|4074795_4075239_-	hypothetical protein	B5TK82	Pseudomonas_phage	3.3e-14	53.6
WP_141323193.1\|4075256_4076285_-	hypothetical protein	B5TK77	Pseudomonas_phage	2.3e-18	66.2
WP_077934295.1\|4076285_4076894_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.6e-83	72.7
WP_077934296.1\|4076881_4077922_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.6e-137	71.9
WP_077934297.1\|4077911_4078310_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	9.2e-48	68.9
WP_077934298.1\|4078312_4078819_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	8.6e-59	69.7
WP_077934299.1\|4078815_4079931_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	5.1e-112	58.7
WP_077934300.1\|4079934_4081185_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.0e-120	53.9
WP_077934301.1\|4081189_4083244_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	8.5e-121	51.6
WP_077934302.1\|4083374_4083671_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	8.4e-38	84.7
WP_077934303.1\|4083667_4084015_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.8e-39	69.6
WP_077934304.1\|4084072_4085569_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.3e-224	79.3
WP_077934305.1\|4085568_4085769_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	4.1e-12	59.3
WP_077934306.1\|4085765_4086356_-	hypothetical protein	B5TK65	Pseudomonas_phage	1.0e-55	53.1
WP_141323190.1\|4086415_4086952_-	hypothetical protein	NA	NA	NA	NA
WP_077934307.1\|4087043_4087553_-	hypothetical protein	NA	NA	NA	NA
WP_077934308.1\|4087619_4088141_-	hypothetical protein	NA	NA	NA	NA
WP_077934309.1\|4088133_4088496_-\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	3.2e-23	44.7
WP_077934310.1\|4088497_4089085_-	hypothetical protein	A4JX03	Burkholderia_virus	1.2e-30	43.6
WP_077934311.1\|4089087_4089435_-	hypothetical protein	NA	NA	NA	NA
WP_077934312.1\|4089489_4090809_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	8.9e-140	60.3
WP_077934313.1\|4090890_4091874_-	S49 family peptidase	A4JX00	Burkholderia_virus	3.7e-90	56.9
WP_077934314.1\|4091870_4093142_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	1.2e-149	63.2
WP_141323188.1\|4093144_4093333_-	hypothetical protein	Q8W6U8	Burkholderia_virus	1.2e-05	52.9
WP_077934315.1\|4093329_4095165_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	7.1e-111	38.8
WP_077934316.1\|4095127_4095658_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_077934317.1\|4095831_4096149_-	HNH endonuclease	Q38456	Bacillus_phage	4.6e-18	51.9
WP_077934318.1\|4096148_4096439_-\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	2.6e-07	39.8
WP_077934319.1\|4096431_4096785_-	hypothetical protein	V9IQG9	Stenotrophomonas_phage	1.0e-05	34.2
WP_077934320.1\|4097043_4097526_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	5.0e-32	47.8
WP_077934321.1\|4097854_4100551_-	bifunctional DNA primase/polymerase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	77.4
4100094:4100110	attL	NA	NA	NA	NA
WP_077934322.1\|4100547_4100754_-	TraR/DksA C4-type zinc finger protein	A0A2H4JDJ0	uncultured_Caudovirales_phage	3.5e-11	57.4
WP_077935029.1\|4100746_4101235_-	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	1.3e-35	60.2
WP_077934323.1\|4101556_4101787_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_077934324.1\|4101883_4102534_+	hypothetical protein	A0A0H5BBV1	Pseudomonas_phage	3.7e-38	52.2
WP_077934325.1\|4102672_4102858_+	hypothetical protein	A0A2H4JG20	uncultured_Caudovirales_phage	1.0e-09	54.7
WP_077934326.1\|4102854_4103430_+	deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	3.5e-64	63.6
WP_077934327.1\|4103440_4103716_+	phage antirepressor KilAC domain-containing protein	A0A2H4JBX5	uncultured_Caudovirales_phage	8.6e-21	57.6
WP_077934328.1\|4103712_4104096_+	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	6.4e-30	59.2
WP_077934329.1\|4104092_4104335_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	7.1e-19	58.8
WP_077934330.1\|4104384_4104729_+	hypothetical protein	C5IHK2	Burkholderia_virus	7.5e-14	37.3
WP_077934331.1\|4104762_4105584_+	DUF2303 family protein	I6WAZ8	Burkholderia_virus	4.5e-41	42.2
WP_077934332.1\|4105660_4106080_+	hypothetical protein	NA	NA	NA	NA
WP_077935030.1\|4106130_4106418_+	hypothetical protein	NA	NA	NA	NA
WP_041118671.1\|4106420_4106657_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-24	70.1
WP_077934333.1\|4106660_4107725_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	7.3e-116	61.1
4112486:4112502	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4583431 : 4589651

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019092899.1\|4583431_4583824_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.9e-54	78.3
WP_015636278.1\|4583825_4584188_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.1e-42	70.8
WP_011062159.1\|4584187_4584484_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.9e-29	67.7
WP_077934485.1\|4584480_4584816_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.7e-45	79.3
WP_011062161.1\|4584812_4585814_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-169	86.8
WP_077934486.1\|4585902_4586904_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011062163.1\|4586975_4588370_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_015636283.1\|4588370_4589651_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	54.1

DBSCAN-SWA_7

4676520 : 4720324

uncultured_Caudovirales_phage(25.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062236.1\|4676520_4677510_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_077934505.1\|4677542_4679900_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_015636325.1\|4680019_4680811_-	molecular chaperone	NA	NA	NA	NA
WP_015636326.1\|4680857_4681358_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_077934506.1\|4681362_4681899_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062241.1\|4681919_4682456_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015636329.1\|4682558_4683059_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_019095133.1\|4683299_4684430_+	cell division protein ZapE	NA	NA	NA	NA
WP_077934507.1\|4684426_4685041_+	hypothetical protein	NA	NA	NA	NA
WP_077934508.1\|4685027_4685396_+	hypothetical protein	NA	NA	NA	NA
WP_077934509.1\|4685485_4686799_+	protein kinase	NA	NA	NA	NA
WP_011062247.1\|4686864_4687569_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_047337316.1\|4687677_4689069_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_019095130.1\|4689167_4690493_-	MFS transporter	NA	NA	NA	NA
WP_011062250.1\|4690779_4691667_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	9.6e-05	34.1
WP_053159490.1\|4691837_4692698_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077934510.1\|4692808_4693918_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_015636337.1\|4694019_4694847_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_011062254.1\|4695048_4695603_+	cytochrome b	NA	NA	NA	NA
WP_011062255.1\|4695593_4696523_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011062256.1\|4696730_4698770_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_077934511.1\|4698929_4700075_-	serine hydrolase	NA	NA	NA	NA
WP_077934512.1\|4700223_4701291_-	fatty acid desaturase	NA	NA	NA	NA
WP_015636340.1\|4701800_4702931_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_077934513.1\|4702935_4703976_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_053159500.1\|4704344_4705433_+	hypothetical protein	NA	NA	NA	NA
WP_053152753.1\|4705444_4705915_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_077934514.1\|4706075_4708751_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_015636345.1\|4708756_4709602_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_077934515.1\|4709694_4710594_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077934516.1\|4710718_4711924_+	MFS transporter	NA	NA	NA	NA
WP_015636347.1\|4711982_4712861_-	sterol desaturase family protein	NA	NA	NA	NA
WP_053159507.1\|4712927_4713893_+	AraC family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
WP_015636349.1\|4713962_4715834_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_011062271.1\|4716060_4716333_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.3e-18	57.3
WP_011062272.1\|4716481_4718878_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-222	52.1
WP_011062273.1\|4719040_4720324_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-139	59.8

DBSCAN-SWA_8

6468543 : 6529167

Burkholderia_phage(22.22%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011063889.1\|6468543_6469044_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011063890.1\|6469281_6470169_+	acyltransferase	NA	NA	NA	NA
WP_077934890.1\|6470169_6471327_-	glutathionylspermidine synthase family protein	Q19CT2	Aeromonas_virus	8.0e-68	36.5
WP_011063892.1\|6471323_6472022_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_065365116.1\|6472032_6472461_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_011063894.1\|6472599_6473166_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_077934891.1\|6473352_6473997_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_077934892.1\|6473993_6474668_+	anti-sigma factor	NA	NA	NA	NA
WP_077934893.1\|6474819_6475383_+	hypothetical protein	NA	NA	NA	NA
WP_015637293.1\|6475446_6475761_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_077934894.1\|6475726_6476017_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_015637295.1\|6476469_6476742_+	hypothetical protein	NA	NA	NA	NA
WP_011063898.1\|6476842_6478042_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	28.9
WP_041752650.1\|6478226_6479084_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_015637298.1\|6479232_6479865_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_015637299.1\|6479998_6483016_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011063902.1\|6483012_6483315_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011063903.1\|6483329_6484580_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_011063904.1\|6484603_6485857_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.9e-100	53.2
WP_019094045.1\|6486169_6486910_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_011063906.1\|6487010_6488051_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_077934895.1\|6488430_6489876_+	cytosine permease	NA	NA	NA	NA
WP_011063908.1\|6489872_6490700_+	carbon-nitrogen hydrolase	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	1.3e-19	34.1
WP_011063909.1\|6490778_6491879_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_011063910.1\|6492170_6493466_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_011063912.1\|6495358_6496129_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_015637306.1\|6496138_6497359_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_015637307.1\|6497358_6499308_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_015637308.1\|6499422_6501483_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_011063916.1\|6501498_6502029_-	hypothetical protein	NA	NA	NA	NA
WP_053160273.1\|6502193_6503171_-	dipeptidase	NA	NA	NA	NA
WP_019095253.1\|6503406_6503808_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_019095254.1\|6503916_6504267_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_041120175.1\|6504263_6504773_-	nucleoside deaminase	NA	NA	NA	NA
WP_011063921.1\|6504828_6506166_-	purine permease	NA	NA	NA	NA
WP_011063922.1\|6506347_6507262_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011063923.1\|6507361_6507616_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	6.1e-21	57.1
WP_015637312.1\|6507599_6507923_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-32	69.4
WP_015637313.1\|6507957_6508374_+	DUF3010 family protein	NA	NA	NA	NA
WP_015637314.1\|6508411_6509371_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063927.1\|6509565_6510510_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019095257.1\|6510598_6511486_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015637316.1\|6511645_6512611_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_041120182.1\|6512719_6513196_+	thioesterase family protein	NA	NA	NA	NA
WP_041120183.1\|6513220_6514381_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_173476976.1\|6514635_6515064_-	DUF4952 domain-containing protein	NA	NA	NA	NA
WP_015637320.1\|6515378_6515642_+	hypothetical protein	NA	NA	NA	NA
WP_019095262.1\|6515704_6516151_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011063935.1\|6516151_6517255_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063936.1\|6517667_6519044_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011063937.1\|6519471_6520428_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019095263.1\|6520498_6521344_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011063939.1\|6521340_6522519_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-26	37.4
WP_011063940.1\|6522706_6524716_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.2e-18	26.8
WP_011063941.1\|6525145_6525739_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_011063942.1\|6525847_6527320_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_015637324.1\|6527463_6529167_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.2e-50	30.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013184

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection