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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042169 Micrococcus sp. KBS0714 chromosome, complete genome 4 crisprs cas3,csa3,DinG,WYL,DEDDh,cas2,cas1,cas4,csb3,csb2gr5,cas7 0 6 4 0

Results visualization

1. NZ_CP042169
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042169_1 182570-182692 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042169_2 2048503-2048735 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042169_3 2422827-2423362 Unclear NA
7 spacers
cas2,cas1,cas4,csb3,cas3,csb2gr5,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042169_4 2427487-2428243 Unclear NA
10 spacers
cas2,cas1,cas4,csb3,cas3,csb2gr5,cas7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP025507 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence 1036075-1036110 6 0.833
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP022666 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence 459612-459647 6 0.833
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP050086 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence 55526-55561 6 0.833
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP030761 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence 552112-552147 7 0.806
NZ_CP042169_4 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2427737-2427772 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 456397-456432 8 0.778
NZ_CP042169_4 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2427737-2427772 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 456405-456440 8 0.778
NZ_CP042169_4 4.9|2428103|33|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428103-2428135 33 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 402363-402395 8 0.758
NZ_CP042169_3 3.1|2422863|34|NZ_CP042169|CRT 2422863-2422896 34 NZ_AP014706 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence 14646-14679 9 0.735
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP021127 Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence 367229-367262 9 0.735
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NC_017327 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence 136866-136899 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP011000 Sinorhizobium meliloti strain USDA1963 plasmid pHRB800, complete sequence 46838-46871 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 186696-186729 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 829119-829152 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP021803 Sinorhizobium meliloti strain USDA1021 plasmid accessoryA, complete sequence 159955-159988 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP021830 Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence 600776-600809 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP021824 Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence 1073789-1073822 10 0.706
NZ_CP042169_3 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder 2423076-2423109 34 NZ_CP021217 Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence 1147208-1147241 10 0.706
NZ_CP042169_4 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2427737-2427772 36 NZ_CP013635 Rhizobium sp. N324 plasmid pRspN324e, complete sequence 319805-319840 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP053440 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence 806865-806900 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP018229 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence 1061038-1061073 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP016287 Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence 755059-755094 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 618862-618897 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NC_012848 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence 401748-401783 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 313036-313071 10 0.722
NZ_CP042169_4 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2428031-2428066 36 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 876008-876043 10 0.722
NZ_CP042169_3 3.1|2422863|34|NZ_CP042169|CRT 2422863-2422896 34 NC_013726 Corynebacterium glutamicum plasmid pCGR2, complete sequence 20199-20232 11 0.676
NZ_CP042169_4 4.2|2427593|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2427593-2427628 36 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1441651-1441686 11 0.694
NZ_CP042169_4 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT 2427737-2427772 36 MK757448 Arthrobacter phage Idaho, complete genome 4077-4112 11 0.694

1. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.833

gtagagggtgccggcccgctccacgctgtactgcgt-	CRISPR spacer
gtagagggcgacggcccgctccacgccg-agtgcgga	Protospacer
********.* ***************.* * ****  

2. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 6, identity: 0.833

gtagagggtgccggcccgctccacgctgtactgcgt-	CRISPR spacer
gtagagggcgacggcccgctccacgccg-agtgcgga	Protospacer
********.* ***************.* * ****  

3. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 6, identity: 0.833

gtagagggtgccggcccgctccacgctgtactgcgt-	CRISPR spacer
gtagagggcgacggcccgctccacgccg-agtgcgga	Protospacer
********.* ***************.* * ****  

4. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

gtagagggtgccggcccgctccacgctgtactgcgt-	CRISPR spacer
gtagagggcgacggcccgctccacgcca-agtgcgga	Protospacer
********.* ***************.. * ****  

5. spacer 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 8, identity: 0.778

-gccggagacctgggcggccttggccacgtcctcgcg	CRISPR spacer
tgtcagcg-cctcggcggccttggccatgtcctcgaa	Protospacer
 *.*.* * *** **************.******* .

6. spacer 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 8, identity: 0.778

-gccggagacctgggcggccttggccacgtcctcgcg	CRISPR spacer
tgtcagcg-cctcggcggccttggccatgtcctcgaa	Protospacer
 *.*.* * *** **************.******* .

7. spacer 4.9|2428103|33|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.758

cggtgg-cacgcacgacgtcctggggtccatcaa	CRISPR spacer
-ggcgaccacgcacggcggcctggggtccatggt	Protospacer
 **.*. ********.** ************ . 

8. spacer 3.1|2422863|34|NZ_CP042169|CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 9, identity: 0.735

gcaagcaggatgacgaccccggctacatcctcac	CRISPR spacer
agtacgaggattacgaccccggccacatcctgat	Protospacer
.  *  ***** ***********.******* *.

9. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 9, identity: 0.735

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
tcgcgcctgccaccgtctccccgaccagcggcaa	Protospacer
** * . .** *.*******************..

10. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

11. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011000 (Sinorhizobium meliloti strain USDA1963 plasmid pHRB800, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

12. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

13. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

14. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021803 (Sinorhizobium meliloti strain USDA1021 plasmid accessoryA, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

15. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

16. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

17. spacer 3.4|2423076|34|NZ_CP042169|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 10, identity: 0.706

tcccctacgcgatcgtctccccgaccagcggcgg	CRISPR spacer
ggcgcacatcgatcgtcggcccgaccagcggcgt	Protospacer
  * *    ********  ************** 

18. spacer 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 10, identity: 0.722

gccggagacctgggcggccttggccacgtcctcgcg	CRISPR spacer
cttcgagaccttggcggccttggcgacgtcggcgac	Protospacer
 .. ******* ************ *****  **  

19. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

20. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

21. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

22. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

23. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

24. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

25. spacer 4.8|2428031|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 10, identity: 0.722

gtagagggtgccggcccgctccacgctgtactgcgt	CRISPR spacer
gtagagggcgacggcccgctccacgccgagtgctga	Protospacer
********.* ***************.* ..  .* 

26. spacer 3.1|2422863|34|NZ_CP042169|CRT matches to NC_013726 (Corynebacterium glutamicum plasmid pCGR2, complete sequence) position: , mismatch: 11, identity: 0.676

gcaagcaggatgacgaccccggctacatcctcac	CRISPR spacer
ctccggaggatgaggaccccggctacagccatgt	Protospacer
 .  * ******* ************* ** ...

27. spacer 4.2|2427593|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 11, identity: 0.694

tgagggggtgtccgggcggcccggcccgacgatcac	CRISPR spacer
ctgccgaaggtccaggccgcccggcccgacgatcag	Protospacer
. .  *.. ****.*** ***************** 

28. spacer 4.4|2427737|36|NZ_CP042169|PILER-CR,CRISPRCasFinder,CRT matches to MK757448 (Arthrobacter phage Idaho, complete genome) position: , mismatch: 11, identity: 0.694

gccggagacctgggcggccttggccacgtcctcgcg	CRISPR spacer
cttgatcgcctgggcggccttgtccaggtcctcggc	Protospacer
 ..*.  .************** *** *******  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 622507 : 684286 56 Corynebacterium_phage(30.77%) tRNA,transposase,integrase attL 675262:675279|attR 686292:686309
DBSCAN-SWA_2 1146498 : 1154926 9 Orpheovirus(33.33%) transposase NA
DBSCAN-SWA_3 1466881 : 1532372 54 Streptomyces_phage(10.0%) transposase NA
DBSCAN-SWA_4 2423739 : 2483322 49 Corynebacterium_phage(30.77%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage