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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018879 Bacillus megaterium strain JX285 plasmid 6, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018880 Bacillus megaterium strain JX285 plasmid 7, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018878 Bacillus megaterium strain JX285 plasmid 5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018874 Bacillus megaterium strain JX285 chromosome, complete genome 6 crisprs DinG,csa3,cas3,WYL,RT,DEDDh 1 3 3 0
NZ_CP018877 Bacillus megaterium strain JX285 plasmid 4, complete sequence 2 crisprs NA 0 2 0 0
NZ_CP018881 Bacillus megaterium strain JX285 plasmid 8, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018876 Bacillus megaterium strain JX285 plasmid 3, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP018875 Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP018874
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_1 388783-388942 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_2 971022-971117 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_3 1182139-1182300 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_4 1385167-1385577 Unclear NA
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_5 2069363-2069452 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018874_6 3824973-3825067 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP018874_3 3.1|1182157|30|NZ_CP018874|CRT 1182157-1182186 30 NZ_CP018874.1 1182121-1182150 2 0.933
NZ_CP018874_3 3.1|1182157|30|NZ_CP018874|CRT 1182157-1182186 30 NZ_CP018874.1 1182133-1182162 2 0.933

1. spacer 3.1|1182157|30|NZ_CP018874|CRT matches to position: 1182121-1182150, mismatch: 2, identity: 0.933

acgagtagaacgacgagtagaacggcgggt	CRISPR spacer
acgagtagaacgacgagtagaacgacgagt	Protospacer
************************.**.**

2. spacer 3.1|1182157|30|NZ_CP018874|CRT matches to position: 1182133-1182162, mismatch: 2, identity: 0.933

acgagtagaacgacgagtagaacggcgggt	CRISPR spacer
acgagtagaacgacgagtagaacgacgagt	Protospacer
************************.**.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018874_4 4.3|1385314|30|NZ_CP018874|CRT 1385314-1385343 30 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 410212-410241 6 0.8
NZ_CP018874_4 4.3|1385314|30|NZ_CP018874|CRT 1385314-1385343 30 NZ_CP033582 Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence 223902-223931 6 0.8
NZ_CP018874_4 4.3|1385314|30|NZ_CP018874|CRT 1385314-1385343 30 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 1051466-1051495 8 0.733
NZ_CP018874_4 4.5|1385398|30|NZ_CP018874|CRT 1385398-1385427 30 NZ_CP003710 Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252601, complete sequence 14163-14192 8 0.733
NZ_CP018874_4 4.5|1385398|30|NZ_CP018874|CRT 1385398-1385427 30 NC_013785 Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM402, complete sequence 4954-4983 8 0.733
NZ_CP018874_4 4.5|1385398|30|NZ_CP018874|CRT 1385398-1385427 30 NZ_CP003716 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402301, complete sequence 10677-10706 8 0.733
NZ_CP018874_3 3.1|1182157|30|NZ_CP018874|CRT 1182157-1182186 30 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 2455552-2455581 9 0.7
NZ_CP018874_4 4.3|1385314|30|NZ_CP018874|CRT 1385314-1385343 30 NZ_CP029234 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence 11026-11055 9 0.7
NZ_CP018874_4 4.3|1385314|30|NZ_CP018874|CRT 1385314-1385343 30 NC_041927 Sphingobium phage Lacusarx, complete genome 78272-78301 9 0.7
NZ_CP018874_4 4.5|1385398|30|NZ_CP018874|CRT 1385398-1385427 30 NZ_CP016289 Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence 610556-610585 9 0.7
NZ_CP018874_4 4.5|1385398|30|NZ_CP018874|CRT 1385398-1385427 30 CP003957 Rhodococcus opacus PD630 plasmid 8, complete sequence 133227-133256 9 0.7

1. spacer 4.3|1385314|30|NZ_CP018874|CRT matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggcgagtagagcgacgagaagaacga	CRISPR spacer
gtacaccgagaagagcgccgagaagaacga	Protospacer
* .*. **** ****** ************

2. spacer 4.3|1385314|30|NZ_CP018874|CRT matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggcgagtagagcgacgagaagaacga	CRISPR spacer
gtacaccgagaagagcgccgagaagaacga	Protospacer
* .*. **** ****** ************

3. spacer 4.3|1385314|30|NZ_CP018874|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

gagcggcgagtagagcgacgagaagaacga	CRISPR spacer
gcgcggcgagtacagcgacgagaactcgcg	Protospacer
* ********** ***********     .

4. spacer 4.5|1385398|30|NZ_CP018874|CRT matches to NZ_CP003710 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252601, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgagtagaacggcgagaagagcgg	CRISPR spacer
gtccggcgagtagaacgccgagaataattt	Protospacer
*  ************** ****** *..  

5. spacer 4.5|1385398|30|NZ_CP018874|CRT matches to NC_013785 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM402, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgagtagaacggcgagaagagcgg	CRISPR spacer
gtccggcgagtagaacgccgagaataattt	Protospacer
*  ************** ****** *..  

6. spacer 4.5|1385398|30|NZ_CP018874|CRT matches to NZ_CP003716 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402301, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgagtagaacggcgagaagagcgg	CRISPR spacer
gtccggcgagtagaacgccgagaataattt	Protospacer
*  ************** ****** *..  

7. spacer 3.1|1182157|30|NZ_CP018874|CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.7

acgagtagaacgacgagtagaacggcgggt	CRISPR spacer
ccatagagaacgacgagaagaacggcgaaa	Protospacer
 *. . *********** *********.. 

8. spacer 4.3|1385314|30|NZ_CP018874|CRT matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 9, identity: 0.7

gagcggcgagtagagcgacgagaagaacga	CRISPR spacer
cttgcgcgcgtagagcgacgagatgaacag	Protospacer
     *** ************** ****..

9. spacer 4.3|1385314|30|NZ_CP018874|CRT matches to NC_041927 (Sphingobium phage Lacusarx, complete genome) position: , mismatch: 9, identity: 0.7

gagcggcgagtagagcgacgagaagaacga	CRISPR spacer
cggcggcgtgtagagcgaggagaagtgacc	Protospacer
 .****** ********* ****** .   

10. spacer 4.5|1385398|30|NZ_CP018874|CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gaacggcgagtagaacggcgagaagagcgg	CRISPR spacer
tgcgggcgagaagagcggcgagaagaggtc	Protospacer
 .  ****** ***.************   

11. spacer 4.5|1385398|30|NZ_CP018874|CRT matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 9, identity: 0.7

gaacggcgagtagaacggcgagaagagcgg	CRISPR spacer
acacggcgagtatcacggcgagaaggaacc	Protospacer
. **********  ***********..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 251799 : 260061 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 2166535 : 2193354 32 Bacillus_phage(22.22%) integrase,portal,head,protease,capsid,terminase,tail attL 2159893:2159908|attR 2199116:2199131
DBSCAN-SWA_3 4170566 : 4179866 8 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP018877
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018877_1 53130-53243 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018877_2 60463-60530 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018877_1 1.1|53160|54|NZ_CP018877|CRISPRCasFinder 53160-53213 54 NZ_CP018877 Bacillus megaterium strain JX285 plasmid 4, complete sequence 53160-53213 0 1.0
NZ_CP018877_2 2.1|60487|20|NZ_CP018877|CRISPRCasFinder 60487-60506 20 NZ_CP045276 Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence 99837-99856 0 1.0
NZ_CP018877_2 2.1|60487|20|NZ_CP018877|CRISPRCasFinder 60487-60506 20 NZ_CP018877 Bacillus megaterium strain JX285 plasmid 4, complete sequence 60487-60506 0 1.0

1. spacer 1.1|53160|54|NZ_CP018877|CRISPRCasFinder matches to NZ_CP018877 (Bacillus megaterium strain JX285 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

gaatgcttctctacatgatgaaatgcaagcttctggtcaaagtgaaagcacaag	CRISPR spacer
gaatgcttctctacatgatgaaatgcaagcttctggtcaaagtgaaagcacaag	Protospacer
******************************************************

2. spacer 2.1|60487|20|NZ_CP018877|CRISPRCasFinder matches to NZ_CP045276 (Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence) position: , mismatch: 0, identity: 1.0

agtggcaaattagttgaaac	CRISPR spacer
agtggcaaattagttgaaac	Protospacer
********************

3. spacer 2.1|60487|20|NZ_CP018877|CRISPRCasFinder matches to NZ_CP018877 (Bacillus megaterium strain JX285 plasmid 4, complete sequence) position: , mismatch: 0, identity: 1.0

agtggcaaattagttgaaac	CRISPR spacer
agtggcaaattagttgaaac	Protospacer
********************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage