CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019639	Mycoplasma bovis strain 08M chromosome, complete genome	1 crisprs	NA	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019639_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019639_1

252578-252660

Orphan

Consensus_repeat	Method
TCTGTACGAGATGTGCTTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019639_1

>merge|NZ_CP019639|1|252578-252660|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGAGCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGATTCTGTACGAGATGTGTTTGAAGA

>NZ_CP019639|1|1|252578-252660|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGA	GCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGAT
TCTGTACGAGATGTGTTTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019639.1\|WP_013954631.1\|240999_242916_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|223265
NZ_CP019639.1\|WP_038582854.1\|253417_254185_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
NZ_CP019639.1\|WP_013954647.1\|255913_257860_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP019639.1\|WP_014829885.1\|250886_251873_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP019639.1\|WP_013954653.1\|263635_264334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954648.1\|257922_258477_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179388
NZ_CP019639.1\|WP_013954630.1\|239488_240886_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP019639.1\|WP_013456076.1\|249635_249965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954650.1\|259619_261788_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954634.1\|246587_247304_+\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000
NZ_CP019639.1\|WP_013954638.1\|250207_250903_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP019639.1\|WP_013954649.1\|258938_259526_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954646.1\|254870_255815_-\|endonuclease	unknown	unknown	gnl\|CDD\|367881
NZ_CP019639.1\|WP_013954651.1\|261799_263182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954652.1\|263181_263517_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP019639.1\|WP_013954632.1\|242929_245515_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP019639.1\|WP_013954636.1\|248458_249166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019639.1\|WP_013954635.1\|247491_248466_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP019639.1\|WP_013456603.1\|258555_258825_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP019639.1\|WP_013954633.1\|245656_246586_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818

Protein	Function_ID	Function_description	E-value
NZ_CP019639.1\|WP_013954631.1\|240999_242916_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|223265	COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].	0
NZ_CP019639.1\|WP_038582854.1\|253417_254185_-\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	5.22796e-06
NZ_CP019639.1\|WP_013954648.1\|257922_258477_-\|inorganic-diphosphatase	gnl\|CDD\|179388	PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.	6.84527e-119
NZ_CP019639.1\|WP_013954630.1\|239488_240886_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	5.9383e-07
NZ_CP019639.1\|WP_013954647.1\|255913_257860_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP019639.1\|WP_013954634.1\|246587_247304_+\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	1.55849e-72
NZ_CP019639.1\|WP_013954638.1\|250207_250903_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	1.24583e-40
NZ_CP019639.1\|WP_013954646.1\|254870_255815_-\|endonuclease	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	5.57394e-50
NZ_CP019639.1\|WP_013954652.1\|263181_263517_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	5.20672e-31
NZ_CP019639.1\|WP_013954632.1\|242929_245515_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP019639.1\|WP_014829885.1\|250886_251873_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.84424e-164
NZ_CP019639.1\|WP_013954635.1\|247491_248466_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.47396e-81
NZ_CP019639.1\|WP_013456603.1\|258555_258825_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.77072e-16
NZ_CP019639.1\|WP_013954633.1\|245656_246586_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19348e-56

>NZ_CP019639.1|WP_014829885.1|250886_251873_-|ribose-phosphate-pyrophosphokinase
MNNNNALLFGMPNCIKLAERISKMINIPLSTLTLTKFADGETMPVSDEAVRGKDVYIIASTSRPVNDNLMILYLFIDSLKRASAKSINIALAYYGYARQDRKASGRQPIGAKLVADFLETAGASKIITVDLHNSAIQGFFNIPIDDLKASFTLAKAIKRSHEKFTVVSPDHGGTVRARSLAELISNDIKISIIDKRRTGINQTEVMGLIGDVKDQNAVIIDDIIDTGGTIIKAAETLKQYGAKKIVIAATHGIFSKGFDIFENNPAVEKVIITDSIDNDELLDKYKKLEIVSLDRFLGSVIDCSINGKSISMLYDKFAKEIKENESHK
>NZ_CP019639.1|WP_013954638.1|250207_250903_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNHINKEYLLNKYSKQIPLLYRYAQMIYEKNKVMNICGFDSVDEIFNQGILGSILVFENAMNEYNHDFVNKKILDIGAGAGFPSVPLLIALDNKFELVIMESITKRCTFLESVKNEFNLNLTIINARAEEINDYNSYFDYICARAVGSVIKIYLMTNHHLAQNGYFILPKGKNYHAEIDEFKNKFTLEKDNISSFEYEDSINNENSSLVLIKKTKPTPRGWPWKWAKIKNY
>NZ_CP019639.1|WP_013456076.1|249635_249965_+|hypothetical-protein
MSRTKKLSISYLITYPIAFIVTVVLLVLYGRQLLDFAQQKEGFTGNLALWTVYLLYAVVIVVPFIMLIINILLIFFNVGTIARILLIVGLFVPWCSFVGALIALIRPGK
>NZ_CP019639.1|WP_013954636.1|248458_249166_+|hypothetical-protein
MNNYSEVAIELQSKLEEAINNIFEITNNEISINVEDVNILQRDNNSINSSTAIGYILEEYLIRKIEQYLSSPDCHFEFSMKPNNKANTSSYDFSLVYKDHLFYINLKANRNVNDAIAAINRLYSDYVEYEGKNPLHYLVFKTNYDIDKSKISNQNKIIIKGTYSFFLEQIDFSKGWKQDHRSWSPGGKLNSGRLIVSKNFFNENQIEISKISYEQTRAYLEEMFNKNFSVAEYEE
>NZ_CP019639.1|WP_013954635.1|247491_248466_+|DNA-cytosine-methyltransferase
MGKRGIIDLFAGAGGLTLGFTQNNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRNELESNWKNKTDLVIGGFPCQGFSLAGRRSKDDERNQLYKYTIDVISRLQPYGFVLENVKGILSFRESDNELVVDKIQKMLAKENYYTKFILLDSSNFGVPQKRERVIFIGCKDKEKVDKVISLLSKHKEKIVTVFDAIGHLEKVTDDKEIPNHIFSKHSEEIKERFMKLKEGESLSKSFSDAFRKLSYDKPSPTVKENHGGVHVHPVLPRVLTPRELANLQSFPEDFIFLGTKSNVLKQIGNAVPVKLSYEIAKIVNKVFFNE
>NZ_CP019639.1|WP_013954634.1|246587_247304_+|ribonuclease-HIII
MQFLDLDVESSLLENKSIIGVDEVGVGDYFGPLCASAVFIDAQNVNKVAELGIKDSKKLSDKRIKELALKLKNSGLIHYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSISVAAASILARDQFLTLVSKMNDEYNTVFPLGAGPKVNAFAKDFFAKHSYDEEVIKKTCKKSFKMNILN
>NZ_CP019639.1|WP_013954633.1|245656_246586_+|Cof-type-HAD-IIB-family-hydrolase
MSTLTNNKKEKFLFAIDLDGTLLSSSRENIVPENCIKAIQRAKDEGHVVCIFTGRPWRSTKPIYDMLGLNTVVSNYNGAQIHNPKDDNFIPHIKYLNLNEMLYILGDQKVKKEISNLAIEGPGWVQLEHRDDDIEAVFGFSSAEKFTVGINLNKVPLSPTGIVFDVKETTDAEELRRYLRARYGDLGEFSYWSKGEGLTPVFDITNVTVNKGRALSLLSRYYGVDLDHTIAFGDGFNDVPMFKVATVSVVLGNAADLVKRHATVRLKKTNKEGGVGDYINKFLDNPEKEIAKSKAMALKMRKVSIQEEE
>NZ_CP019639.1|WP_013954632.1|242929_245515_+|DNA-topoisomerase-IV-subunit-A
MNKKKEQQLNDLLSKIVRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKLAKIIQGPDFPTGGVIYGTDGIYEAFERGKGRITLASRYNVYSDNKYKYIEITEIPYGVIKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDAYLKHVKDVKVKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSEDSKQGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHTFMFEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKEEEVFLGISKFGYIKKVSKKTYESNLITTYGIKEDDNILFYDIASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFVAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDVPIYGLKSNGNKACYLANGDELVSFTVVKPNDSVALVSQSNKVRLINVSEISRVSKQNKGVSIFSKGRLNNAIVQCDPLLDETKLLLVNNQGQAHFEKIQNYVKQASTKFINFDADDIRTISLISNYSSTTNDNEFHSYEKESSDENQLMNKAIETKNSIDLSIDEILSKVDELLKKDKK
>NZ_CP019639.1|WP_013954631.1|240999_242916_+|DNA-topoisomerase-IV-subunit-B
MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAVILKNDGSVVVSDNGRGIPVGKTPSGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSVVNALSNKLKCLVYRDKHVYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKKAKFNFETIAERLRESSFLISNLSIKLLDEQSGKSEEFKYSNGIKAFVEFINDSKTALFNVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALPPLFKLSINKGQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKNVNFTMEDDFEI
>NZ_CP019639.1|WP_013954630.1|239488_240886_+|CvpA-family-protein
MKIIESLENIAFNSWSILIPIILVIFIVILAIVSGLRRGIYGGLIILLFGLSGWIIGIFAAKPLVDVIVIKTKITLPGNKQIDAEILRKMFYGIAMFVIQILFLIVGEIISLLLRKWIKKPLKNMRENKVSSVGSRSLGAVLSTAGIVPCAILTANVTGFLTTNNKVIDANDKMLNYISFKKAEGVSKYTPGLIASAKIGNDLLNASSGSKLDETVIGAFEWYLQQFANPDNYVLLSVSKDGQAKPIISTNALKNINRKEEQEKVLQGLIPFILGDSSVKKNGITLFFNFNTSSAGAFKYDSNSGKIEINTDNSENTQLKVKNIGKISNIFQLYTATPESFRILEYLSKLGLKDAKASEGFDEIYSLVDQTEPVWDILNAAQLKFNMNPSYRIKVYDREYVKRMKDILFDLFEKNTGGKFKYDRKELNEEKMKSWVTIQTIHQKIYWIVSSVIDNVFITPENVSN
>NZ_CP019639.1|WP_038582854.1|253417_254185_-|hypothetical-protein
MPNKVVITGFKDSLINENIIIKPEPIPPINRENPIMKDAETSTNDESSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSEPEKANSELSNERKIKEKGYRLNELTAYPYDLIDVDDDANKDELAKKLNDVITHKNGAIAIVGGSFFSKCNNLQLTGLSINKSIKSETKSQISTHNKLIGFFEGSDGYGIKVGHHGEANSKKYLFKWRLVKEDGNFGPKVYEQIIDLS
>NZ_CP019639.1|WP_013954646.1|254870_255815_-|endonuclease
MMNSKMIKHKFLVSLGLISAPVLSLTVLSSTGCNNKNSTTDDNYLIPEKSFYEKSNYYDSLEGLNGNKLYSELIKIQHNHLSGIKSYRYLKTIYKDAFKDLYYEKDGSLLDIYSENPIGKDPYNYSFNDSGSSAKSEGLGFNREHLVPQSWFKREKLARQDAHHVWPADILVNNKRDNYPFGKVTNAIFTSKNGTKIDSYLAEPIDEFKGDIARAHLYFAITHASRYKMHNKGNEVFKFFDNKPLVNKYFDTYTKWAKKDQINLFDIVRNNEIAKHQNGLRNPFSDYPELIDLIINPGNKVFVNKGILKSNIAV
>NZ_CP019639.1|WP_013954647.1|255913_257860_+|transketolase
MNINQKVVASMQAIALDSINNAGGGHIGSAIDISPIMYAVVAKHMKISADHPKWISRDRLILSAGHASMSFYSMMHFLGLLSLDEMKNHKRKHSKTPSHPETDAFDFVDASTGPLGQGIAMGVGMAIAEKKMSLKINKGNTKVIDNYTYVIAGDGCLQEGITHEALQIASVMKLNKFILIHDYNKIQLDTKVSDVSNVDLLAYFKALNFNVIEINEASYDNIDKAITEAKKSDRPTYIMVHNIIAPFTPFENTTKGHHGILNSEQTIEFKKAIGLENKAPFEYDSDVYEYGRTIMANKAKSYEEWLVELDNHKKQFPWIHSLLLETINNETNYDFSNILVKQDDLAIRDYFKAFSEIVDFSYPFLIGGGADVGSSTKVRFADSILDYGQRIDYGVREFAMTAINNGINLYGGLKTADSTFLAFSDYAKGALRLGGIMKLPAVHLYSHDSYLVGDDGPTHQPIEQVTVLRSIPNLLVIRPCDKYELVMGLNYAYNNTSTQVAIIGTRQPIKTMHSSKFSEFMAASLVYENKEFDISILSSGSEVELAYKTAVELKNHGIIANVISVPVLQKLVDNDELAIKLKLDKKPMFAIEASNDPLWYKLSKYNKIDGHFASEYGFSDKGNVVYDSMGFNVNSIVDKVKQFLSKNA
>NZ_CP019639.1|WP_013954648.1|257922_258477_-|inorganic-diphosphatase
MSNVIEIRIEIPKNSNIKYEYNREDGQIHVDRILRGDFKYPCNYGFIPNALDWDGDELDVLLYSPETFIPGVVVNARIIGAMKMNDSGETDTKLIAVHDDDYRLANINSLKELPEPFLLDIETFFNNYKNWKKPNLTKVLGFEDEKWAFAELEECKELMDKYGKMPKKEFVAKMMKEHPEKYTF
>NZ_CP019639.1|WP_013456603.1|258555_258825_+|30S-ribosomal-protein-S20
MANIKSKVKSIAKQEEFRQRNNAMKTRVRKAIRAAREAVLAKEEGFEKKVFEAHSIIATAVQKGIYHPNKGARKSSRLDHFVNEQKSKQ
>NZ_CP019639.1|WP_013954649.1|258938_259526_-|hypothetical-protein
MQMIIKTTAIEVLRELQKLLESENINYSLGLSNYYEYKNKPELFLINDIEVCLWHKDFYFLLKKYPNHFILPENLPFKSLAPYYKFQGSSIKINIIVGTSDEKINYWYKFRNYKRLIYWGNSKKHWFYYFLGHRTQRVYLHDLVNDLVVERYTKFIILNSEIDKFKAFDNLNFNKRFFVTEKGITIPFFEPFRSL
>NZ_CP019639.1|WP_013954650.1|259619_261788_+|hypothetical-protein
MGKKKTPFFERLLQKNAEQENKNKTTGKSKKSRSWKIATTSTVLVLAVATGITVPLVINSTKKNFIDGYASNTNVASAKIGDHNLDLNFGDFKDIYQNHNTSTSEERLKEIDKIILYYLYDQEQKASAEYQKLWNDSKRSDEKDNNSFRLPTLDELKTKFKNELVDIENNMKLQFGTANWQTEFNKHLVQKYNGAKNIDEAVKNKTFEHIKSDALRRFRLINGDSKKDEIERKGKDGKHVFGWWHKDNNENKFIELEDKSKLALATDSFVFKDSYKSIDPFIDSYIANEKPRIISEFTIPGIAPAKKNEKWKIDKNIFLRYLFYAKEGTFGLSKVTEGYNVVKEKFNSFDHYIKSVVDKANGKNILPDEAIQYSSILNMFSTSKEDIKKNWGTSGLTSISELVTGDNFQKFLANNPKLLFGENYSSGSTNGNKPKEIELFEKIKEISEKIAEVAKSSNGMSGSSSTGSSSNNNGALISNNTQATEYNTMLEKFFTEVNESQNKGLTEKVFEENILKKFVAIFEDKEKIQTVYKVKFNGNNIGAKNVTGILSPEGFKLLIFGDEIKKDELVKMIKNDFILNNKYKKQLGVRYNALQKLNKQLSRNEYILKMLQDNEFKEYLKTQNNNFATDQNGKKLENVKYNEQSIKDLITSSTAAIQFDKISNFIKLSKAAATWIETRAKNNYDELFELKDGKAYFKHNKDKTAASLVLEYLKKQFNLEAK
>NZ_CP019639.1|WP_013954651.1|261799_263182_+|hypothetical-protein
MKKISKKLLASLSLFTIPSVAIISAKCGNDVETTERLNQQKDLKDAKRVTELEEIWKNFALSYIYKIKPSNKHDAKSWKQNFEKEFQNQQSQLFKDSYDAYKIFALDQLSKNEYYFVEKSLEWKKNDVFKSNPFNWISTKNFPGETDQKDFIRIWMEDKTGIRKEINNMLLVKAYFDISELKKLQTIANNIANAGKADKDKSKDQKFEYFVGGKDAKFDLDHYNLVKYAFENKYIQLWKRTFDDKTTSNDVFTRKEIKNTISSKDDFNAFFKDTAEAEKKAKEWEIITKNNEDKELQGYAGIQKDPGTYGLNWNETDNKRRVTGSGTYGVYDALNSILISFNDLASKSSVGVKDKDGKSIVSYINQIVPVGKKIKLKTKEDYTKDKVEDSKLKETEVLSFEGTIYKEYLNKLAYLFYGKDSKNLLEKAIEAFAHLGVKIKVNKEIAPLYEQLKNKVWVEK
>NZ_CP019639.1|WP_013954652.1|263181_263517_+|HIT-family-protein
MDDLFLKIISGEEEGKIFYEDEYCVAFYDKFPIQPGHFLVVPRIKSKNIAEADDFTAGHLINTARKLGKQEVLDKGIAGFKILINTGRSADQSIFHTHVHVIPYKEKSKDN
>NZ_CP019639.1|WP_013954653.1|263635_264334_+|hypothetical-protein
MNKRKLLLMSSLMSVAPIMVAAKCNPDSDNIVEFRLGIKDLNLRFANYGAFSSKELDKMLKQKPLKDGEFTVVYPSQEELEKEAKIIRDFFEKEETKKIPSYQTIYKETYETIVLGKRPVMLSDFTNEYLWSRDLVKIIDNGSIKNKNKLKLIINQFIDNANGSTTAHFRIEHSDDQRIYEVVGDSNGYIIQFNGKLKTISPNHYHLTKEIIENNKGNLAVLLKANETTQRK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78927 : 90288

Bodo_saltans_virus(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954527.1\|78927_79908_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	3.9e-15	27.1
WP_013954528.1\|79911_80733_+	alpha/beta hydrolase	G9E3U1	Emiliania_huxleyi_virus	2.3e-08	32.5
WP_013954529.1\|80816_81581_+	hypothetical protein	NA	NA	NA	NA
WP_013954530.1\|81573_82554_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	8.1e-53	40.6
WP_013954531.1\|82678_87055_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	6.2e-12	31.8
WP_013954532.1\|87460_88684_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.5e-61	35.1
WP_013456569.1\|88673_89639_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.6e-29	40.9
WP_013954533.1\|89628_90288_+	uracil-DNA glycosylase	A0A068EP41	Falconid_herpesvirus	1.6e-28	36.4

DBSCAN-SWA_2

150770 : 160377

Mycoplasma_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013455927.1\|150770_151787_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6
WP_014829869.1\|152114_153956_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.7e-17	19.1
WP_013954581.1\|154217_155630_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.6e-81	68.7
WP_013954582.1\|155613_156450_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.5e-87	62.0
WP_013954583.1\|156442_157336_+	spermidine/putrescine ABC transporter permease	Q6GZ01	Mycoplasma_phage	2.1e-92	62.1
WP_013954584.1\|157322_159224_+	membrane protein	Q6GZ00	Mycoplasma_phage	1.8e-80	34.7
WP_013455927.1\|159360_160377_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6

DBSCAN-SWA_3

267193 : 309540

Hokovirus(10.0%)

transposase,integrase,tRNA

attL 286356:286404|attR 295187:295235

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014829889.1\|267193_268744_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.9e-80	35.7
WP_075270989.1\|268746_269532_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_013456627.1\|269552_271742_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.0e-71	33.5
WP_013456572.1\|271744_271987_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_013456283.1\|272329_272917_+	guanylate kinase	A0A0M5KCK5	Mollivirus	1.2e-08	38.6
WP_013456579.1\|272922_273675_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_013456514.1\|273692_274691_+	serine/threonine protein kinase	Q85453	Moloney_murine_sarcoma_virus	4.3e-17	32.2
WP_013456585.1\|274702_275548_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_013455939.1\|275534_276197_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_013954660.1\|277131_278520_+\|transposase	transposase	NA	NA	NA	NA
WP_013954661.1\|278688_280914_-	AAA family ATPase	A0A218KCE8	Bacillus_phage	3.4e-30	27.7
WP_013456112.1\|281059_282493_-\|transposase	transposase	NA	NA	NA	NA
WP_013954662.1\|282965_284009_+	AAA family ATPase	A0A2H4UTU5	Bodo_saltans_virus	9.9e-09	29.0
WP_013954663.1\|284010_286281_+	S8 family peptidase	NA	NA	NA	NA
286356:286404	attL	NA	NA	NA	NA
WP_013954664.1\|286510_289651_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-24	24.8
WP_013954665.1\|289652_291293_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_013954666.1\|291279_291831_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954667.1\|291827_292520_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954668.1\|292698_293874_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954669.1\|293947_294916_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	3.8e-31	29.2
WP_078086164.1\|295280_296882_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
295187:295235	attR	NA	NA	NA	NA
WP_078086149.1\|297403_298186_+	hypothetical protein	NA	NA	NA	NA
WP_013954672.1\|298178_299336_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_013954673.1\|300281_301901_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.9e-109	39.8
WP_013954674.1\|302140_304807_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	4.2e-80	27.3
WP_013954675.1\|304819_305530_+	signal peptidase II	NA	NA	NA	NA
WP_078086167.1\|305790_307392_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954660.1\|308151_309540_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

337457 : 427470

Tupanvirus(15.79%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954691.1\|337457_338702_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.3e-09	27.0
WP_013456216.1\|339143_340493_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-13	24.0
WP_013954692.1\|340485_342096_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_013954693.1\|342161_343601_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_013954694.1\|343712_345800_-	peptidase S41	NA	NA	NA	NA
WP_013954695.1\|345763_347155_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_013954696.1\|347157_349467_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_013954697.1\|349785_351147_-	variable surface lipoprotein	NA	NA	NA	NA
WP_013954698.1\|351666_352500_+	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	3.6e-54	45.7
WP_013954699.1\|352806_353760_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_013954700.1\|353809_354706_+	elongation factor Ts	NA	NA	NA	NA
WP_013954701.1\|354739_356614_-	peptidase S41	NA	NA	NA	NA
WP_013954702.1\|356637_357141_-	dUTP diphosphatase	S6AVW3	Thermus_phage	5.6e-10	32.8
WP_078086168.1\|357443_359045_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954704.1\|359430_360795_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_078086169.1\|361249_362851_+\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954705.1\|362980_363766_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_013954706.1\|363770_365300_-	RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	2.0e-29	33.7
WP_013954707.1\|365292_367233_-	DNA primase	A0A1S5RFD7	Helicobacter_phage	5.7e-42	35.3
WP_013954708.1\|367274_368651_-\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	3.9e-53	32.0
WP_013954709.1\|368762_370550_-	membrane protein	NA	NA	NA	NA
WP_013954710.1\|371000_372356_+	alkylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013456298.1\|372358_373291_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-07	30.0
WP_013456124.1\|373254_375006_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013456114.1\|375112_375358_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_013456030.1\|375438_377952_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_038582866.1\|378194_379241_+	zinc-dependent alcohol dehydrogenase family protein	A0A0K0KVL7	Prochlorococcus_phage	1.0e-13	26.9
WP_075271040.1\|379389_381240_-	type I DNA topoisomerase	A0A2P1ELA0	Moumouvirus	3.7e-75	32.2
WP_013456432.1\|381607_382045_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_013456362.1\|382086_382485_+	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	9.3e-08	30.3
WP_013456088.1\|382504_382831_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_013954713.1\|382965_384294_-	hypothetical protein	NA	NA	NA	NA
WP_078086163.1\|384532_385561_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_013456295.1\|385904_386360_-	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA
WP_013954715.1\|386410_388081_-	APC family permease	NA	NA	NA	NA
WP_013954716.1\|388319_389636_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	2.7e-11	25.1
WP_013456122.1\|389704_391408_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	2.0e-14	23.1
WP_013954717.1\|391491_392736_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.1e-09	27.0
WP_013456084.1\|392834_393626_-	aquaporin family protein	M1HQW3	Paramecium_bursaria_Chlorella_virus	7.3e-12	27.5
WP_078086150.1\|393634_395143_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_013456345.1\|395432_396824_-	hypothetical protein	NA	NA	NA	NA
WP_038582872.1\|396956_397943_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_013456401.1\|397959_398928_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_013456470.1\|399041_399785_-	DNA repair protein RecO	NA	NA	NA	NA
WP_013456409.1\|399964_400249_+	hypothetical protein	NA	NA	NA	NA
WP_013456558.1\|400241_401888_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_013456463.1\|401894_402899_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_013456004.1\|402891_403566_+	ribonuclease III	M4QMG4	Micromonas_pusilla_virus	1.2e-18	31.9
WP_013954720.1\|403639_406618_+	AAA family ATPase	NA	NA	NA	NA
WP_013954721.1\|406670_408023_-	YitT family protein	NA	NA	NA	NA
WP_013954722.1\|408117_408954_+	HAD family phosphatase	NA	NA	NA	NA
WP_013954723.1\|408940_409672_-	DNA-processing protein DprA	NA	NA	NA	NA
WP_038582875.1\|409898_410939_+	zinc-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	5.2e-34	29.7
WP_038582700.1\|411268_412297_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013954726.1\|412561_415363_-	C1 family peptidase	NA	NA	NA	NA
WP_013954727.1\|415591_422623_+	hypothetical protein	NA	NA	NA	NA
WP_038582704.1\|425194_426103_+	variable surface lipoprotein	NA	NA	NA	NA
WP_078086171.1\|426441_427470_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	5.0e-21	33.0

DBSCAN-SWA_5

512656 : 552375

Faecalibacterium_phage(40.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954804.1\|512656_514996_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.6e-110	33.7
WP_172792936.1\|515205_518205_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.8e-135	44.0
WP_038582744.1\|518296_519022_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_013954660.1\|519643_521032_+\|transposase	transposase	NA	NA	NA	NA
WP_013456419.1\|521451_522363_-	hypothetical protein	NA	NA	NA	NA
WP_013954806.1\|522498_522912_-	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
WP_013456276.1\|522927_524391_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_013456581.1\|524443_525307_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_013954807.1\|525299_526886_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_013954808.1\|526878_527439_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_013954809.1\|527441_528014_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_013456149.1\|528018_528246_-	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_013456258.1\|528261_529080_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_013954811.1\|529717_531391_+	hypothetical protein	NA	NA	NA	NA
WP_013954812.1\|531652_532456_+	variable surface lipoprotein	NA	NA	NA	NA
WP_078086173.1\|532930_533959_+\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.1e-20	32.9
WP_014829937.1\|534210_534912_+	variable surface lipoprotein	NA	NA	NA	NA
WP_014829938.1\|535523_535964_-	hypothetical protein	NA	NA	NA	NA
WP_013954815.1\|535956_537705_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.9e-101	36.9
WP_014829939.1\|537712_538708_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_013954817.1\|538824_539580_+	hypothetical protein	NA	NA	NA	NA
WP_013954818.1\|539760_541197_+	hypothetical protein	NA	NA	NA	NA
WP_014829940.1\|541230_541542_+	hypothetical protein	NA	NA	NA	NA
WP_078086174.1\|541612_543214_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_078086175.1\|543687_544716_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	3.8e-21	33.8
WP_014829942.1\|544981_545860_-	hypothetical protein	NA	NA	NA	NA
WP_014829944.1\|546242_546506_-	hypothetical protein	NA	NA	NA	NA
WP_014829945.1\|546660_547212_-	variable surface lipoprotein	NA	NA	NA	NA
WP_048349622.1\|547511_548570_+	variable surface lipoprotein	NA	NA	NA	NA
WP_078086176.1\|548787_550416_+\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013456029.1\|550962_552375_-\|transposase	IS1634-like element ISMbov2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

921962 : 987538

Mycoplasma_phage(18.18%)