CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP014604	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK4, complete sequence	0 crisprs	csa3	0
NZ_CP013017	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK1, complete sequence	0 crisprs	NA	0
NZ_CP014602	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK2, complete sequence	0 crisprs	NA	0
NZ_CP013016	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh	5
NZ_CP014603	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013016_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013016_1

362507-362609

Unclear

Consensus_repeat	Method
CCGACTTAGCTCAGTTGGTAGAGCAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP013016_1

>merge|NZ_CP013016|1|362507-362609|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCGCCGACGTAGCTCAGTTGGTAGAGCAC

>NZ_CP013016|1|1|362507-362609|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCAC	CTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCG
CCGACGTAGCTCAGTTGGTAGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013016.1\|WP_010291225.1\|350810_351377_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP013016.1\|WP_014324309.1\|369387_369798_+\|DUF3021-family-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP013016.1\|WP_014324301.1\|359795_360689_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP013016.1\|WP_011679265.1\|362733_363267_+\|rRNA-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|211334
NZ_CP013016.1\|WP_014324313.1\|374762_375884_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP013016.1\|WP_011679260.1\|355295_355694_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP013016.1\|WP_011679258.1\|350040_350685_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341358
NZ_CP013016.1\|WP_014324299.1\|354932_355214_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP013016.1\|WP_014324304.1\|364102_365050_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_CP013016.1\|WP_014324298.1\|351377_354917_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP013016.1\|WP_014324307.1\|368227_368956_+\|membrane-protein	unknown	unknown	unknown
NZ_CP013016.1\|WP_014324305.1\|365862_367311_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP013016.1\|WP_014324303.1\|363337_364054_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP013016.1\|WP_014324300.1\|355724_357017_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP013016.1\|WP_014324310.1\|369931_372022_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|376463
NZ_CP013016.1\|WP_014324302.1\|360776_362264_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP013016.1\|WP_014324308.1\|368933_369401_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP013016.1\|WP_010277907.1\|357017_357557_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP013016.1\|WP_011679262.1\|357584_359687_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP013016.1\|WP_014324306.1\|367430_368231_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP013016.1\|WP_010291225.1\|350810_351377_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.28277e-94
NZ_CP013016.1\|WP_014324309.1\|369387_369798_+\|DUF3021-family-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	1.60212e-08
NZ_CP013016.1\|WP_014324301.1\|359795_360689_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.40897e-101
NZ_CP013016.1\|WP_011679265.1\|362733_363267_+\|rRNA-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	1.68309e-102
NZ_CP013016.1\|WP_011679260.1\|355295_355694_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	1.77007e-05
NZ_CP013016.1\|WP_011679258.1\|350040_350685_-\|CBS-domain-containing-protein	gnl\|CDD\|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.94521e-07
NZ_CP013016.1\|WP_014324299.1\|354932_355214_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	9.50943e-29
NZ_CP013016.1\|WP_014324304.1\|364102_365050_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	2.50858e-128
NZ_CP013016.1\|WP_014324298.1\|351377_354917_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP013016.1\|WP_014324310.1\|369931_372022_+\|DNA-topoisomerase-III	gnl\|CDD\|376463	pfam01131, Topoisom_bac, DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.	1.94228e-69
NZ_CP013016.1\|WP_014324305.1\|365862_367311_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.65842e-119
NZ_CP013016.1\|WP_014324303.1\|363337_364054_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	1.34299e-129
NZ_CP013016.1\|WP_014324300.1\|355724_357017_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	7.24732e-74
NZ_CP013016.1\|WP_014324313.1\|374762_375884_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.27798e-116
NZ_CP013016.1\|WP_014324302.1\|360776_362264_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP013016.1\|WP_014324308.1\|368933_369401_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	1.41805e-17
NZ_CP013016.1\|WP_010277907.1\|357017_357557_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.80407e-78
NZ_CP013016.1\|WP_011679262.1\|357584_359687_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP013016.1\|WP_014324306.1\|367430_368231_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.30651e-50

>NZ_CP013016.1|WP_014324302.1|360776_362264_+|lysine--tRNA-ligase
MAEEKALNDQMLARRQKLATIVSDLHLDPFGKRFERTAKAQELHNLYDASSLEELENAKHEVVIAGRMVAKRGAGKVIFADFRDVSGKIQVYARRDDLADNYPIIKRADLGDFLGIKGIMMKTEAGELTVLATELTHLSKALRPMPDKFHGISDVETRYRKRYLDLIANEDSFKKFQERSHIISAIRAYMDRNDFLEVETPILQTEAGGAAARPFITHHNALNIDMYMRIATELYLKRLVVGGMERVYEIGRIFRNEGMDPKHNPEFTTMESYAAYMDFTDVMDETEGIFKAAASVVSDDLKITYQGTEIDLGTKFARKHLVDLIKEQTGIDFWQEMSVEAAQKLADDNHVKYEKYWGVGHIINAFFEEFVEDTLVQPTFVYGHPVEVSPLAKKNTDDPRFTDRFELFIMGSEYANAFTELNDPIDQRARFEAQAAERENGNDEAEGIDEDFIEALEYGMPPTGGLGVGIDRLVMLLTDSDTIRDVVLFPTMRPE
>NZ_CP013016.1|WP_014324301.1|359795_360689_+|Hsp33-family-molecular-chaperone-HslO
MADQFIKAITKNKYFRTFAVNGTNLVHQAAQIHETSRIAAVVLGRGLLATTLTAQAVLKGEETLSTKINGRGPIGNVVVESDAKGSVRGYVTNPNLETLINEAGQLDVAKAVGKNGFLQVTKFAPYSDPYIGQSQLVSGEIGDDFTYYLAQSEQTPSVIGVSVYMNSDDTVAGAGGFLVQALPDATDEAIDQLEVALKNMKPLSEMIQERYTPLEVLEEIFGKGEVEILQTAGIGLAAEPSKDAYAKMLLTLPASEIQAMIKEDHGAEIVGKFSGKRYFFTEEQLSEILKQIEKNNE
>NZ_CP013016.1|WP_011679262.1|357584_359687_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNNKGGFLRSSVFYIFIFLAVVGMVYGLFGNDKTTTKTITSSEFIKALNDKELKSVTVQPGNSIYNVTGTYKKAQTATKDKGLSLFQPTQKVTKFTSTLLPNDASLKSVTDAATKTKTELVTKQAENSGFWLNLLVSLVPVLLIVAVFYLMMNQAGGGKGGQGGMMSFGKSKAKPSDPKDNKVRFADVAGAEEEKQELVEVVEFLKAPKKFVNLGARIPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEMFVGVGASRVRDLFENAKKSAPAIIFIDEIDAVGRRRGTGMGGGNDEREQTLNQILIEMDGFEGSEGVIILASTNRSDVLDPALLRSGRFDRKILVGAPDVKGREAILNVHAKNKPLADNVDLKAIAQQTPGYVGADLENLLNEAALLAARRNKSKVDAADIDEAEDRIFQGPAKTNHNMSESERRTTAYHEAGHALVGLVRSEASVVRKVTIVPRGRIGGYALMTPKNDRYNLKYSEAKEQLAGLMGGRASEIFMFNEASSGASNDFQQATGLARQMVTAFGMSDKLGMVQLEGNASVGYADQAGNRAYSEETARLIDEEVRRLAREAFDDAIAILRDNKDKLTAIAEALLEVETLDEKQIKDIYLTGTFTRKDIQDDTELAKAKSFEEAKAAADAKDSQAEQRFEKQDEEKSSDDHSESKNEDTDSTDKSETDDNNTENK
>NZ_CP013016.1|WP_010277907.1|357017_357557_+|hypoxanthine-phosphoribosyltransferase
MDNDIQEVLYDQESIQKAAERLGKQITQDYAGSTPLFLSVLKGAYLWTADLLREVDLYAELEFIKISSYHGGVSSSDEITLVTDVRSDVRGRDVIILEDIVDTGQSLLFLKELLAKRGAKSIKVATLLDKIEGRKVEVDADYAGFNVRNEFVVGYGLDYEEHYRNLPYVGILKKEVYTK
>NZ_CP013016.1|WP_014324300.1|355724_357017_+|tRNA-lysidine(34)-synthetase-TilS
MTEKILQTIQQYNWPETVIVAVSGGVDSVVLVHALSKTKANLVIAHVNYRLREESDDDADFVRQLATQTGAIFEEQVWQHIPDHAVEKAARQFRYDFFEELAQKYHTNTIAVAHHADDQAETVLLKMIRGGRLQQMGGMQTKNHKVIRPFLSITKQELITYAQDNQLGWHQDKTNFDVDYTPRNLLRNDVLPKLTTINQRAVRHINNMAAQILQQQRLIDNQAKIYANDIQDWQKIPTLWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKPNGKIALADNFEFIKNYQKISIQKQQNMAQVLTPVMLKLNQWHSFAKTTFMWTDNVPMNGQSFIKFQLTRSLPYLSLRPAKASDKIALINGHKNLRRLAIDEKLTPQERTMMWVLATADDEVIAVHLRSNQWRVNADFAVKENTQPYWLVCQIEET
>NZ_CP013016.1|WP_011679260.1|355295_355694_+|septum-formation-initiator-family-protein
MAGNFKRRQSNITPLNPAIAREIKKSERANSEAAKHYRKAHARREKKILLFGGLIAIIFVVQLLIGQVKLHAANQELTNTQDRLEKVQKTNTDLTADTKRLKDATYLQQLLRDKYGYSKQGELVYNLPSDNN
>NZ_CP013016.1|WP_014324299.1|354932_355214_+|RNA-binding-S4-domain-containing-protein
MRLDKYLKISRLIKRRTVAKEIADQGRISINGKVAKSSSDVSTNDELEVRFGNKTLTVKVLKIVETTKKEESADMYEVVSEKFQQDFRKIGDE
>NZ_CP013016.1|WP_014324298.1|351377_354917_+|transcription-repair-coupling-factor
MTLIDFLSDTVTIKKLNEQATVGSAQLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSLLEDLVYNFPAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVTSLAGAERLVPKKQSLEQAYLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQTPGEFAHRGSIVDVYPITFDDPIRLDFFDDELDQLKSFDVATQKSTTSFDEINIDPATDFIVSEHQYDQAKLAIESAFSDYRTNLSGVDKKHATDGFAPTQYMLNERERGSVLVPYAPFFFDGQTTLLDYFPTDSLIIIDEYTRLMETRLQQMTRDQEWIEQQIEAYQLLPKQTWRTEITDLLASNQHATIYLANFQRGLNRIKFTNVEEVTTRPANQYYGQIPALKNDLIYAQESGITMVLLIPDAKRRANFSRSLSELEVPVTETRDIVKNQVQIMPGELSAGFEWPKLHLTVLTTHELFTQAKHSAPRTRKIANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTIAYQQNAKIFIPVTQLNLIQKYVGASDVAKKPKLNKLGGSEWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQIKFDDSFGYPETPDQIRSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHYETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGLLIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQLYQLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGAGDLLGKQQHGFIDSVGYDMYTQMLKDTVAQKQGKQVTTSQPETDAELILGVLAYLPDEYVSDNAQKIELYSRIRQARTDAEFEDIESDMLDRFGEMPDEVARLLLVGQIKQLADQSQITNIRRQRKQLIMTFNETATKNLAGEAIFETMVDVPLKAAVRTEEGNLQVIFTVNDVAESSIWLNILRNFLLVIINKLSAKTLNELHH
>NZ_CP013016.1|WP_010291225.1|350810_351377_+|aminoacyl-tRNA-hydrolase
MKFIFGLGNIGAEYDQTRHNIGFMAVDAFATANHMSFSPSKQFALVAKTIIGGESVMLVKPTTYMNDSGKAVRAILDYYDGDVDDVLVLVDDMDLPFGKMRFRAKGSAGGHNGLKSIMTHTGSQTFLRLKFGLGHPVHEQNVVVNYVLGKFTAAEKPDIDAMLDRSTQAIADWIQGATAPELSNRYNG
>NZ_CP013016.1|WP_011679258.1|350040_350685_-|CBS-domain-containing-protein
MFQKSLVIPKSELTTVTENATIQEVYDIFNDPENAHTRTMPILDESGKLFRGNVYKQHVFEHVAKNGNMNLPATAIMRNSTKFIYTNSKFYEVFFAIRDLPFIAVLDENHQFYGIFTHDALMDLLSQSWSVRSGGVAIAISTHNTQGDLSKISKIITRYSNIESLLTIQSELKPLTVLFTLPLQEDSEQLEKLIKRLEKKGYHVSSVENLNRFR
>NZ_CP013016.1|WP_011679265.1|362733_363267_+|rRNA-large-subunit-pseudouridine-synthase-E
MIVLFNKPYNVLTKFTDAEGRPTLADYIDIPRVYAAGRLDMDSEGLLLLTDSGKLNHELTDPDNKAYKTYVVQVEGVPTKSQLKQLEQGVALKDGLTLPAKVKRIPYPKWLWEREKPIRIRKNQPTSFIQLKIKEGRNRQVRRMTAAVGIPTLRLIRTHIGEYHIADLKPGQYRIVK
>NZ_CP013016.1|WP_014324303.1|363337_364054_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWENIKMKKAQTDGAAAKVNSKYGIEIYAAAKQGGSPDPEANSTLKFVIERAKQAQVPKHVIERAIEKAKGSGDETFIEGRYEGFGPNGSLIIVDTLTSNVNRTATNVRTAFNKNGGTYGAAGSVSYLFDETGVIVFEGEDADATLETLLDAEVDVRDAEQQDDHIVVYTEPTALHQAIAALRESGVSDFSTTEISMLPQSEMTLAGKDLEIFEKLIDVLESDDDVQKVYHNVEL
>NZ_CP013016.1|WP_014324304.1|364102_365050_-|ferrochelatase
MNKKGLLLVNLGTPDSPHPDDVKAYLKEFLSDTNVIQMPRLLWQPILRGKILPKRSFKSAELYQKIWRKDGSPLMVYAKKQVEQVQQLQPNWIVRYAMTYRKPNIAETLKEMRLAGADDIVVLPLFPQYSVTSTQSVIDQVRKADKNINIVKSFYNDEAYLDLLARDIREAWAKNDYDRLIISYHGVPESYVRRGDPYVDHCTATTQGVLESVGPLTPDNTHQVFQSRFGPTEWVKPYLSDTLMSLPSQGIKRVLVATPAFVADCLETIEEIHVENHDIFKQAGGEVFDVVQPFNEHIDFSKYIASLANRHFAQN
>NZ_CP013016.1|WP_014324305.1|365862_367311_+|NCS2-family-permease
MEKLFQLKENKTTVRREIIAGITTFVSMAYIFFLNPQILGQAGVPTQAVFLAAILVAVFGTLFMGLFANVPFALAPGIGMQAYFTYTIVFGFGFTWQQALAIVFLVGVVDIVITLTHGRRAIVKGIPTELKAAIGGGIGLFVTYIGLKNAGFINFIVDPSNIMTLNGKPFTGEVHGAVNSILANGGVTPELTKFNNASTLLALIGFIILVVLVMRKVPGAFLISLIVTTLIGIPMGVTNTHIGAGTSVSHAFGELGQVFGQSLGAQGLGSLFNNWHHASLALVTIFAMGLTGLFDAIGTLIGIGNQTGIFSKEDQKSFESSNGFNSKMDRALVVDTFTTAFAGIVGTSNTTTFIESASGVAAGARTGLANVVTAAGFALMILFAPLVGVVPTAATSPLLILVGIMMMGEFKKISWESLEVALPAFFTSVFMAFSYSISYGIAAGFIFFIIVKFALGKFKEVSPVLLIVSAFFLLNFAVLAFM
>NZ_CP013016.1|WP_014324306.1|367430_368231_+|ABC-transporter-ATP-binding-protein
MLNIKNLSVSYGRKVALTVPKLSINKGEIIGVMGKSGSGKSTLVNSCLGLIPFKGQVRIDTDDVGILMQEQHYVDTMTNQKMIEGMLNTRIKRDKKLTELINFFDFSDQLSLHFKNLSGGQKQRMSLIMVLYQEPELLFLDEMTTGLDFESRQALISQLKIYFKQHQTTVLMVTHYAQEIEALADKLLVIHDGQVKAFDEPKNLFKQYIGYSAFIVDNHTEKSIKVQQPEDEYKVACRLIDDGDDFRRTQSDIELVYTEVMKGQRA
>NZ_CP013016.1|WP_014324307.1|368227_368956_+|membrane-protein
MIKKRKLVLEFQNLLGNIITLFFGFAFAPMMALVFGNSYANVPQALNQLYLGFFCTIPLSMVFVGFSSLFSQEVEQGFTLRAELFGYSRVSQALHKFMALTVFVLLSSIIYSWIFLSHFNLPLPNAVIIGQMAIFQILNTAVYFIIVFILTTILKKFSRVYGISMISYFAIMIISGIMGNMDVGKLGDYLPIKLFVTNYTNHLNDTDYISGKIGLYLLILLGILGVILKVIVRNKNGNKHQY
>NZ_CP013016.1|WP_014324308.1|368933_369401_+|LytTR-family-transcriptional-regulator
MEININIDDKLKDVQVVISGSDIEQLADIAQYLKSRNTPSRQLAIKTADNIRVVDKEDIILVESYGNDLTFTLKNNHKITTRKTLKRFLEENQKSDFVQISKSEVMNLSYLSKMESAFSGNYYAFLTNQARVTVSRRFIKGILKRLEGSAEDEAF
>NZ_CP013016.1|WP_014324309.1|369387_369798_+|DUF3021-family-protein
MKHFKEAIVYLLVGIGVGSFISLLSFTLNHATPSMKQFGLLMTMSAIMGLLSLIFEYDKITFITQLISHFILEMLTYGFFIWLTFGSAVITFTNIPTFVITYVIIFIYFRKQGRDNARRINEQLQKNKPKKSDSTN
>NZ_CP013016.1|WP_014324310.1|369931_372022_+|DNA-topoisomerase-III
MPNYLILTEKPSAAANFVKALGGKTGVFGDFTYKITNLRGHVMTLKDPEEMVAEDLKKQYKSWLVKHLPWNLEDFSWARTYIRQRNIRTGKIESTKKLIDELKKESKSGYDAIVIATDTDPSGEGELLAWEALDAIGWRGQVLRANFMDESVSGIQKAMHQLRNVSDKMADGEYVKGESRNRWDFASMQLTRIATTAAKKEGFKVVAREGRLKSVIVWRIYQQLAAIKNYIKTPYFEVKFKDPAGHIFGRVTPQGEVIPWRFATKEQAKVDFNNYHETEVINEKHQTRTQAPGKLLDLAGLASILAPRGFSSKEVLSTYQKMYEAQIVSYPRTEDKTVTPEQFNELLPLIDQIAGVVGVDKNLLTHRSPRKTHVKSQGAHGANRPGENVPQTTQSLAKFGSSGPAIYEVLAKNYLAMLAEDYVYDHVTANLKDYPEFKTAFNIPIKLNFKLVYDSQKAIKVEEGEEEESISGQLGPQARPYLHEGANPKPQVPTTKWIMAFLEKHNVGTGATRVSTLSEMSRGTKAMLTEKRGKLGLTETGNVSAIMVKDTWIASPKITKRLFEMMDQVGRFEMTMVQVLDSATKVVEHDMPIMLDNAQTLETLLGKPKPSIKKPRKTSEKMTGIWQGQEITFAREWSGHVFTDEELQKLLTGSEVSFPAKSKRGKLYTAIGKMAKQTFKGNTFYGFKLNPKTKKA
>NZ_CP013016.1|WP_014324313.1|374762_375884_+|alanine-racemase
MNYNAPHRHAVIELSQSAVVHNLKVIKENTHAKEIMAVLKANAFSHGLPEMASLSITAGATRFGMAMLDEALTLRDLGYIQPIDVLGLTDPRYARLAAERNITLAFSTKESIKAAAEQLAGTGLTLKVSLPVDTGLNRIGFKSREDLVAAIQEVSAQDTLIFQSMWTHFATADTPNVDYVDFQISEWQRLTHDLPVEPNEKHFANTGIATWYPEKINTDIVRLGIGLFGINGSVPIMSMPFELIPALSLKAKVVNSKPLKKGDAVGYGPEYHAPNDGYLITIPIGHSDGYPFNGSGMRALVADGQIGHIVGGVAMDQSMIFVTNPVAVGTTVTLIGRVGDQSITMQDLAEHTQSSIVALMNDFAPRLQRIIVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58686 : 75384

Bacillus_virus(33.33%)

protease,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014324148.1\|58686_58896_+\|bacteriocin	Blp family class II bacteriocin	NA	NA	NA	NA
WP_014324149.1\|58936_59143_+	hypothetical protein	NA	NA	NA	NA
WP_049639999.1\|59857_60238_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011679055.1\|60415_61972_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-14	24.9
WP_011679056.1\|61971_63093_+	ABC transporter permease	NA	NA	NA	NA
WP_011679057.1\|63094_64051_+	ABC transporter permease	NA	NA	NA	NA
WP_014324151.1\|64090_65005_-	L-2-hydroxyisocaproate dehydrogenase	NA	NA	NA	NA
WP_014324152.1\|65120_65876_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.4e-12	29.8
WP_014324153.1\|65868_66768_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011679060.1\|66764_67769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014324154.1\|68235_68823_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002815471.1\|68880_69618_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011679061.1\|69733_69859_+	putative metal homeostasis protein	NA	NA	NA	NA
WP_014324155.1\|70674_72024_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_014324156.1\|72041_74189_-	peptide cleavage/export ABC transporter	F2Y352	Organic_Lake_phycodnavirus	3.8e-23	30.6
WP_010287032.1\|74419_74596_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_010287029.1\|74626_74788_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_014324157.1\|75246_75384_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA

DBSCAN-SWA_2

545810 : 558975

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011679402.1\|545810_547076_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	3.8e-47	30.8
WP_014324423.1\|547077_548349_+	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	1.9e-17	31.8
WP_014324424.1\|548363_549239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010285285.1\|549249_549831_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_011679405.1\|549970_551128_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.1e-117	65.1
WP_011679406.1\|551210_551903_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.8e-36	34.5
WP_014324425.1\|552142_553051_+	phosphate ABC transporter substrate-binding protein	M1U9L0	Synechococcus_phage	1.2e-10	27.7
WP_041775151.1\|553134_554475_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-29	35.2
WP_014324427.1\|554616_555498_+	phosphate ABC transporter substrate-binding protein PstS family protein	H6WG65	Cyanophage	7.6e-10	28.4
WP_011679411.1\|555550_556474_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_010291776.1\|556473_557358_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011679412.1\|557365_558208_+	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.0e-11	28.4
WP_014324428.1\|558204_558975_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-16	29.3

DBSCAN-SWA_3

801069 : 809728

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014324572.1\|801069_801975_+	cation transporter	M1Q1N9	Streptococcus_phage	2.4e-43	35.6
WP_014324573.1\|801994_802954_+	arginine deiminase	NA	NA	NA	NA
WP_014324574.1\|803336_804371_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-36	33.3
WP_011679597.1\|804370_804961_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.4e-23	34.9
WP_014324575.1\|804963_806157_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-90	44.9
WP_011679599.1\|806181_806652_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.4e-31	43.9
WP_014324576.1\|807088_809728_+	cation-translocating P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	3.9e-78	28.5

DBSCAN-SWA_4

1432841 : 1440908

Staphylococcus_phage(33.33%)

protease,integrase

attL 1424014:1424028|attR 1442229:1442243

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1424014:1424028	attL	NA	NA	NA	NA
WP_002815228.1\|1432841_1433984_-	nicotinamide-nucleotide adenylyltransferase	A0A2K9VDE3	Lactobacillus_phage	2.2e-110	56.4
WP_011680189.1\|1434029_1434797_-	nicotinamide mononucleotide transporter	U5J9C5	Bacillus_phage	4.7e-24	31.5
WP_010281611.1\|1434899_1435343_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_002815235.1\|1435446_1436031_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_011680190.1\|1436031_1437282_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-132	57.9
WP_078126276.1\|1437511_1438690_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	6.8e-14	24.1
WP_014324994.1\|1438761_1439679_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	4.9e-68	43.2
WP_078126277.1\|1439741_1440908_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.8e-38	32.3
1442229:1442243	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1658585 : 1669356

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014325118.1\|1658585_1659695_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	1.9e-13	28.5
WP_014325119.1\|1659691_1660609_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_002815833.1\|1661117_1661444_+	thioredoxin family protein	NA	NA	NA	NA
WP_010280582.1\|1661537_1662395_-	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	6.7e-11	29.8
WP_010280580.1\|1662486_1663785_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	7.5e-14	26.5
WP_011680398.1\|1663765_1664467_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-30	35.4
WP_002815839.1\|1664547_1664913_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A2P0ZKX3	Lactobacillus_phage	9.4e-07	36.8
WP_014325120.1\|1664951_1666073_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.8e-30	29.5
WP_002815841.1\|1666069_1666480_-	holo-ACP synthase	NA	NA	NA	NA
WP_014325121.1\|1666550_1667837_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_010292689.1\|1667841_1668078_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_014325122.1\|1668147_1669356_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.9e-19	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage