CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP019007	Escherichia coli strain Ecol_AZ159 plasmid pECAZ159_1, complete sequence	0 crisprs	DEDDh	0	1
NZ_CP019006	Escherichia coli strain Ecol_AZ159 plasmid pECAZ159_2, complete sequence	0 crisprs	NA	0	0
NZ_CP019008	Escherichia coli strain Ecol_AZ159 chromosome, complete genome	4 crisprs	c2c9_V-U4,csa3,cas3,DEDDh,DinG,RT,WYL	2	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38542 : 103561

Salmonella_phage(20.0%)

tRNA,transposase,integrase,bacteriocin

attL 60111:60134|attR 96425:96448

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000911324.1\|38542_38941_-\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_077916033.1\|38940_39171_-	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_011117356.1\|39249_44520_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_000205777.1\|44539_45286_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	6.0e-08	30.2
WP_000139359.1\|45340_45901_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_012311405.1\|46038_46251_+	hypothetical protein	NA	NA	NA	NA
WP_001233871.1\|46493_46955_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	5.5e-20	37.7
WP_001333231.1\|47000_47210_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000083818.1\|48059_48320_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|48545_48620_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_031942351.1\|48612_49470_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000079942.1\|50385_50655_+	hypothetical protein	NA	NA	NA	NA
WP_000969996.1\|50651_50933_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001058007.1\|50978_51278_+	hypothetical protein	NA	NA	NA	NA
WP_000102288.1\|51449_52379_-	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	1.2e-05	27.0
WP_001323889.1\|52917_54495_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
WP_001161490.1\|54804_55365_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_078232964.1\|55368_58335_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	99.9
WP_001697863.1\|58460_59648_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000124134.1\|59647_60013_-	hypothetical protein	NA	NA	NA	NA
60111:60134	attL	NA	NA	NA	NA
WP_000678689.1\|61995_64677_-	hypothetical protein	NA	NA	NA	NA
WP_000493379.1\|65212_65563_+	hypothetical protein	NA	NA	NA	NA
WP_000796228.1\|65606_66296_+	hypothetical protein	NA	NA	NA	NA
WP_000016493.1\|66292_67084_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
WP_000864812.1\|67260_67614_+	colicin M immunity protein	NA	NA	NA	NA
WP_001312845.1\|67663_68479_-\|bacteriocin	lipid II-degrading bacteriocin colicin M	NA	NA	NA	NA
WP_000203272.1\|68722_69250_+	colicin B immunity protein	NA	NA	NA	NA
WP_001105066.1\|69607_69889_+	hypothetical protein	NA	NA	NA	NA
WP_014640552.1\|70352_70589_+	colicin V immunity protein	NA	NA	NA	NA
WP_001259758.1\|70566_70878_+	colicin V	NA	NA	NA	NA
WP_109045958.1\|71047_73162_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.6e-34	26.5
WP_012006529.1\|73136_74378_-	HlyD family secretion protein	NA	NA	NA	NA
WP_000079941.1\|76365_76635_+	hypothetical protein	NA	NA	NA	NA
WP_000969990.1\|76631_76913_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001058005.1\|76958_77807_+	3'-5' exonuclease	K7RFY5	Vibrio_phage	3.8e-27	38.5
WP_001311056.1\|77923_78406_+	hypothetical protein	NA	NA	NA	NA
WP_000142437.1\|78707_79055_+	hypothetical protein	NA	NA	NA	NA
WP_001190234.1\|79613_80648_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.9e-73	44.0
WP_001222186.1\|81502_83680_+	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	9.6e-06	31.8
WP_000271276.1\|83724_84681_-	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_000933675.1\|84765_85995_-	catecholate siderophore esterase IroD	NA	NA	NA	NA
WP_001312839.1\|86098_89884_-	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	1.3e-45	30.0
WP_001318220.1\|89897_91013_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_000738422.1\|94159_94453_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_000450494.1\|97538_98732_+	hypothetical protein	NA	NA	NA	NA
96425:96448	attR	NA	NA	NA	NA
WP_024133197.1\|101893_102040_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	7.0e-06	96.0
WP_085949156.1\|102005_103219_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	6.0e-167	98.6
WP_077248528.1\|103378_103561_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019008

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019008_1

1045033-1045184

Orphan

Consensus_repeat	Method
GGTGAGATAGGTGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019008_1

>merge|NZ_CP019008|1|1045033-1045184|CRISPRCasFinder
GGTGAGATAGGTGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGTTACAGCAGTACGTGATGAACTGAAGGCAGAGGGAGACAGTCTGCGTGGTGAGATAGGCGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGT

>NZ_CP019008|1|1|1045033-1045184|CRISPRCasFinder
GGTGAGATAGGTGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGT	TACAGCAGTACGTGATGAACTGAAGGCAGAGGGAGACAGTCTGCGT
GGTGAGATAGGCGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019008.1\|WP_000983423.1\|1048178_1049735_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP019008.1\|WP_021572005.1\|1060739_1061120_+\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
NZ_CP019008.1\|WP_001317566.1\|1039302_1039746_+\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP019008.1\|WP_001167445.1\|1036413_1036962_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371695
NZ_CP019008.1\|WP_000551919.1\|1050881_1052225_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675
NZ_CP019008.1\|WP_000760915.1\|1046646_1046985_-\|c-type-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|237508
NZ_CP019008.1\|WP_001018808.1\|1038025_1039045_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NZ_CP019008.1\|WP_000609007.1\|1042327_1043281_+\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
NZ_CP019008.1\|WP_000699820.1\|1039824_1040097_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP019008.1\|WP_021572006.1\|1036980_1037460_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377323
NZ_CP019008.1\|WP_001101067.1\|1041504_1042335_+\|transketolase	unknown	unknown	gnl\|CDD\|226468
NZ_CP019008.1\|WP_000803220.1\|1053719_1055036_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP019008.1\|WP_131501864.1\|1043543_1043657_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP019008.1\|WP_001293448.1\|1049900_1050725_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP019008.1\|WP_000958152.1\|1035899_1036136_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP019008.1\|WP_001313270.1\|1057379_1059350_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP019008.1\|WP_000470229.1\|1040119_1041508_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|171824
NZ_CP019008.1\|WP_000859647.1\|1047489_1048179_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NZ_CP019008.1\|WP_000977396.1\|1059368_1060160_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP019008.1\|WP_000884153.1\|1045834_1046290_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|369791

Protein	Function_ID	Function_description	E-value
NZ_CP019008.1\|WP_000983423.1\|1048178_1049735_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP019008.1\|WP_021572005.1\|1060739_1061120_+\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.62757e-17
NZ_CP019008.1\|WP_001317566.1\|1039302_1039746_+\|PTS-transporter-subunit-EIIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	4.34883e-36
NZ_CP019008.1\|WP_001167445.1\|1036413_1036962_+\|hypothetical-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	0.00128055
NZ_CP019008.1\|WP_000551919.1\|1050881_1052225_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	2.13095e-154
NZ_CP019008.1\|WP_000760915.1\|1046646_1046985_-\|c-type-lysozyme-inhibitor	gnl\|CDD\|237508	PRK13791, PRK13791, c-type lysozyme inhibitor.	5.03241e-41
NZ_CP019008.1\|WP_001018808.1\|1038025_1039045_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	2.34254e-103
NZ_CP019008.1\|WP_000609007.1\|1042327_1043281_+\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	2.5376e-149
NZ_CP019008.1\|WP_000699820.1\|1039824_1040097_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.69739e-34
NZ_CP019008.1\|WP_021572006.1\|1036980_1037460_-\|hypothetical-protein	gnl\|CDD\|377323	pfam04352, ProQ, ProQ/FINO family. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilizing FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.	4.78327e-22
NZ_CP019008.1\|WP_001101067.1\|1041504_1042335_+\|transketolase	gnl\|CDD\|226468	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	2.51046e-131
NZ_CP019008.1\|WP_000803220.1\|1053719_1055036_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP019008.1\|WP_131501864.1\|1043543_1043657_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.46702e-08
NZ_CP019008.1\|WP_001293448.1\|1049900_1050725_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.54491e-68
NZ_CP019008.1\|WP_000958152.1\|1035899_1036136_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.97399e-23
NZ_CP019008.1\|WP_001313270.1\|1057379_1059350_+\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.47462e-122
NZ_CP019008.1\|WP_000470229.1\|1040119_1041508_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|171824	PRK12996, ulaA, PTS ascorbate transporter subunit IIC.	0
NZ_CP019008.1\|WP_000859647.1\|1047489_1048179_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	1.29598e-127
NZ_CP019008.1\|WP_000977396.1\|1059368_1060160_+\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	7.29023e-24
NZ_CP019008.1\|WP_000884153.1\|1045834_1046290_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|369791	pfam08281, Sigma70_r4_2, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.	4.12667e-05

>NZ_CP019008.1|WP_131501864.1|1043543_1043657_+|transposase
MVKLVLQPGASVARIAREHDINDNLLFKWLRLWQNVR
>NZ_CP019008.1|WP_000609007.1|1042327_1043281_+|transketolase-family-protein
MINLAPAGQKDSIEMRKVYADFIAQQSKNVSSVIALEADLMSSMAMDSVAQDYPDHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMSLDYQGANVKVIASDAGVAACHNGGTHMSFEDMGIVRGLAHSVVMEMTDAVMFSDILRQLVALEGFYWIRTIRKQAASIYAPGTTFTIGKGQVLREGTDVTLIANGIMVVEALEAARQLELAGVSVAVIDMFTLKPVDRMLIKNYAEKTGRIVTCENHSIHNGLGSAVAEVLVETCPVPMRRVGVKERYGQVGTQDFLQREYGLTAQDIVAAARELL
>NZ_CP019008.1|WP_001101067.1|1041504_1042335_+|transketolase
MNVKELTQFARDIRIQTLKSLTHLGFGHYGGSMSVVETLAVLYGAVMKIDPAAPDWPERDYFILSKGHAGPALYSTLALKGYFPLEELSTLNQNGTRLPSHPDRLKTCGVDSTTGSLGQGISIAGGMALSHKLAGRKNRVFCIVGDGELNEGQCWEAFQFIAHHRLNNLTVFVDWNKQQLDGQLDEIINPFDLEGKFRAFGFDVVTVKGDDIEGLLNVVKPVLPAEARPRVVILDSIKGQGVPCLEQLSNSHHLRLTEEMKGTLNETIRQLEAMHD
>NZ_CP019008.1|WP_000470229.1|1040119_1041508_+|PTS-ascorbate-transporter-subunit-IIC
MFILETLNFVVDILKVPAILVGLIALIGLVAQKKSFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLGSMFEHAFNIQGIIPNNEAIVSIALEKYGASTALIMAFGMVANIIVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGISLVFTGSLILGLVMAFFPALAQRYMKRITGNDDIAFGHFGTLGYVLSGWIGSVCGKGSRSTEEMNLPKNLSFLRDSSISISLTMMVIYLIMAISAGREFVESQFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLVGFLFSFFGGLVGLFLLGQMKLVLILPGVVPHFFTGAAAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLPVLGAIGFANTTFSDADFGAVGIVLGNLARYLSPFAITGLVVALFVLLVAWNIFASNKIAAKAQKKSGAKS
>NZ_CP019008.1|WP_000699820.1|1039824_1040097_+|PTS-sugar-transporter-subunit-IIB
MKIMAICGSGLGSSFMVEMNIKKVLKKMDIEAEVEHSDLSSATPGAADLFVMAKDIAASASVPESQLVVINNIIDINELETQLRNWLAKQ
>NZ_CP019008.1|WP_001317566.1|1039302_1039746_+|PTS-transporter-subunit-EIIA
MLNIWLSDSTIALRKNAATWQQALDICARPLLDAEIITTDYLSAIKTQHEKLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLEEGVSFHTEEFDPVDVIILLAAPDKHSHIEMISALAELFSSEKDLHELHQARNVEEIKKIISRF
>NZ_CP019008.1|WP_001018808.1|1038025_1039045_-|LacI-family-DNA-binding-transcriptional-regulator
MAITRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLREKIEAAVNELGYMPNLTASALASASSHTIAMVVPNLAEAGCTEMFAGLQHVLQPAGYQIILAESRHRLEQEEKLLETLLASNIAAAILLSVEHNSTVRHLLKNASIPVIEIGAIRTDPIDINIGIDNVAAMFELTDMLVQRGYQNIGLLCANQEQWIFQQHLQGWYKAMLRHHMSPNRVINAALPPVFSTGASQLPEFLLAWPELDALVCVSDELACGVLYECQRRRIKVPDELAVVGFGDSDVSKVCQPSLTTMAVPHRKIGLEAGNVLLERIKEGNWSNQIFIEPCLCLRESC
>NZ_CP019008.1|WP_021572006.1|1036980_1037460_-|hypothetical-protein
MVTLTINRKPQGIFSKSPATPLQDKTNTVHNEKLLRVRNQTPWRHMTKRQRKNRKRINRLVELWPELFNREKPKPLKVGIPDDLIQDIAIRELAFGAGALRAAVASYVQSPRYYRALMAGGARYNLNGQPCGEVTPQEQKEAETRLMMLNDRRKDRKPR
>NZ_CP019008.1|WP_001167445.1|1036413_1036962_+|hypothetical-protein
MQITEALLSAPGEIRRFVQQAVDHWPNLLAFHFTLHSAEGNINGQQIHAFCTSFYRQVHERITERNHTASPSSPVVLRWLREQHGGATIRCLLLFSQELFCHPRASVTVDEECSQRVDLLQQTWQVISAGGQCRVEKRFQVVRGDTSGQYVALKTVALSLGLPVVIAITHRPVQRCTLITAQ
>NZ_CP019008.1|WP_000958152.1|1035899_1036136_+|AlpA-family-transcriptional-regulator
MLTSMTGHDSVLLRADDPLIDMNYITSFTGMTDKWFYKLISEGHFPKPIKLGRSSRWYKSEVEQWMQHRIEASRGAAA
>NZ_CP019008.1|WP_000884153.1|1045834_1046290_+|sigma-70-family-RNA-polymerase-sigma-factor
MLDIILATRDIYFEKALREIFGTVSSRIRYIEDAISDRRRVQSGRSFRYYFVFCDDEYTDIVRILFTGEACCILNKSMLNLRAAGGVLTLEERRAVLNRYYRGLSIAEITEETGQNDKTVYGHLRRALQRSGFRKGRFIKGREAAGDSGVE
>NZ_CP019008.1|WP_000760915.1|1046646_1046985_-|c-type-lysozyme-inhibitor
MKKYSSPVLALILVSNSMVSSAATKEISKTAYVCNGNKTMEVVYINTTAGNSYAVINQMDEMIPMQLMKMASGANYEAINKRYSYKLYTKGKKANLVEGNDNPVLSNCSSAE
>NZ_CP019008.1|WP_000859647.1|1047489_1048179_-|N-acetylmannosamine-6-phosphate-2-epimerase
MKTVLDSLKGKLIVSCQALENEPLHSPFIMSRMALAAAQGGAAGIRANSVADISAIKEIVSLPMIGIIKRDYPGSEVFITATLREVDELMTVEPEIIALDATARPRPGGQTLEELVTQIRARYPSILLMADIATVEEAVTAERLGFDCVGTTLYGYTAETARHVLAENDCGFLREVLKAVSVPVVAEGNVDTPECAARCLTLGAHTVVVGGAITRPQQITTRFIAAIAS
>NZ_CP019008.1|WP_000983423.1|1048178_1049735_-|PTS-transporter-subunit-EIIC
MMQMFSGASSGGWFEKAQRFGKSFMLPIAVLPAAGLLLGIGGALSNPNTLTAYPFLDADWLQAIFTIMTSAGSIVFANLSVLFAVGVAVGLAKSDKGTAGLASLLAFLVMNATINALLTLNGTLAHKNPASVGQGMTLGIQTLETGVFGGVVIGLVTCTLHSRFNKVSLPQFLGFFSGSRFVPIISSLAAIVVGAVMTVVWPHFQKLIFGLGDLVDATGYLGTLLYGFILRMLGPLGLHHIFYLPFWTTALGGSEIVNGQLVEGTQRIFFAQLADPNTQQFYAGTARFMSGRFITMMFGLLGACLAMYHTAKPENRKVVAGLLLSAALTSFLTGITEPVEFSFLFVAPVLYVIHAFFDGLAFMVAHILHITIGQTFSGGLIDFLLFGVLQGEAKTNWMYVPIVGIPWFFLYYFTFRYLINRFGWLTPGRENVTQVESGQPQSERAAAVIAGLGGKENLEEVDCCATRLRVTVKESSKVDEAALKVAGARGVIIRGNGVQVIYGPHVTIIKNEVEEILS
>NZ_CP019008.1|WP_001293448.1|1049900_1050725_+|MurR/RpiR-family-transcriptional-regulator
MSENENLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCKGYNEFKMALALDLRQVQFVEHGGDEIDNVVNESVQAIQDTAKLLDRTLLEAAALALHQAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKNTFVVAISSSGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALTAKVGVMLLVELLTTSLIALDDQYSEVSQKTASATLPLLL
>NZ_CP019008.1|WP_000551919.1|1050881_1052225_-|esterase-like-activity-of-phytase-family-protein
MHNSKIRLAILVGCMALSANLWAKAQPVQATLAGHAILPAKSAVSTPKDAPGDLQQSGKYTSGKRVTELGSVAGKSAERLTGLSLPINGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANSPDAMLYLNQYKIDFKDGSVVPLKTLFLHDPDKKVPFHIINESTELRYLTGSDFDPESFQFSDDALWIGDEFGPYLIKTDLNGKVLAVFDTEVDGKVVKSPDNPTLTLPSAPDGKLNFQVARSKGFEGMAISPDGSKLYPLLEGALWDGEQFENVDGKRYLRVLEFDAKQQAWTGRSWQYVLEDNQNAIGDFNMIDDTHGLVIERDNGEGTADKACVAGAPTNNCFSQVARFKRVYKIAFSDTNVGKPVEKLGYIDLMKIQDPNKLARKPLNDGVLTFPFFTIENVDVVDTNHIIVGNDNNFPFSSSRWPNMADDNEFILLDVKDFLK
>NZ_CP019008.1|WP_000803220.1|1053719_1055036_-|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MKPLHYTASALVLGLTLMGNAQAVTTIPFWHSMEGELGKEVNSLVQRFNAENPDYKIIPTYKGNYEESLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGINFDESQFVPTVSGYYSDSKTGHLLSLPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLASIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADIATRQMQNKPSLPFTKGLRLGNMPQIRAIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS
>NZ_CP019008.1|WP_001313270.1|1057379_1059350_+|TonB-dependent-receptor
MYMNVIRTVICTLIIVPVGLQAATSHSSMAKDTITIVATGNQNTVFETPSMVSVVTNDTPWSQNAVTSAGMLKGVAGLSQTGAGRTNGQTFNLRGYDKSGVLVLVDGVRQLSDMAKSSGTYLDPALVKRIEVVRGPNSSLYGSGGLGGVVDFRTADAADFLPPGETNGLSLWGNIASGDHSTGSGLTWFGKTGKTDALLSVIMRKRGNIYQSDGERAPNKEKPAALFAKGSVGITDSNKAGASLRLYRNNTTEPGNPTQTHGDSGLRDRKTVQNDVQFWYQYAPVDNSLINVKSTLYLSDITIKTNGHNKTAEWRNNRTSGVNVVNRSHTLIFPGAHQLSYGAEYYRQQQKPEGSATLYPEGNIDFTSLYFQDEMTMKSYPVNIIVGSRYDRYKSFNPRAGELKAERLSPRAAISVSPTDWLMMYGSISSAFRAPTMAEMYRDDVHFYRKGKPNYWVPNLNLKPENNITREIGAGIQLDGLLTDNDRLQLKGGYFGTDARNYIATRVDMKRMRSYSYNVSRARIWGWDMQGNYQSDYVDWVLSYNRTESMDASSREWLGSGNPDTLISDISIPVGHRGVYAGWRAELSASATHVKKGDSYQAGYAIHSFSLSYKPVSVKGFEASVTLDNAFNKLAMNGKGVPLSGRTVSLYTRYQW
>NZ_CP019008.1|WP_000977396.1|1059368_1060160_+|DUF4198-domain-containing-protein
MMKNTGYILALCLTASGHVLAHDVWITGKQAENNVIAEIGYGHNFPSKGTIPDRRDFFETPRLYNGKETITLKPTSTDYVYKIESAGNGNSYVLSTKMKPGYWSRTSSGWKPVSREGRNDVAYCEFVTKYAKSFIPGEQQMPAQLYQYPIGDELEIIPLSDISRFGEDVKLKVLYKTSPLAGATLELDSVSYLKSSRHTHAAEHKHSAHKAELTFVSNEDGIITVPSLHVGQWLAKVKNKKVFQDKNLCDETVDVATLSFSRN
>NZ_CP019008.1|WP_021572005.1|1060739_1061120_+|IS66-family-insertion-sequence-hypothetical-protein
MQKNVTPGRRKGCPNYPPEFKQQLVAASCEPGIYISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR

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Crispr_ID: NZ_CP019008_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019008_2

2521574-2521697

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019008_2

>merge|NZ_CP019008|2|2521574-2521697|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP019008|2|2|2521574-2521697|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019008.1\|WP_000007273.1\|2532163_2532745_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP019008.1\|WP_078233004.1\|2512908_2513118_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP019008.1\|WP_000587585.1\|2518578_2519391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP019008.1\|WP_001296101.1\|2517124_2517793_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP019008.1\|WP_001182336.1\|2527016_2528228_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP019008.1\|WP_000098896.1\|2525577_2526726_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP019008.1\|WP_001070015.1\|2517789_2518575_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP019008.1\|WP_000190985.1\|2529269_2530295_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP019008.1\|WP_000504336.1\|2516413_2517061_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP019008.1\|WP_000212681.1\|2521132_2521438_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP019008.1\|WP_000534260.1\|2522011_2523268_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP019008.1\|WP_000269498.1\|2528340_2529273_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP019008.1\|WP_000493947.1\|2524896_2525538_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP019008.1\|WP_001295403.1\|2510939_2512352_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP019008.1\|WP_000848170.1\|2519402_2521007_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP019008.1\|WP_000102278.1\|2530593_2530683_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP019008.1\|WP_001174939.1\|2523308_2524682_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP019008.1\|WP_001070248.1\|2513573_2514200_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP019008.1\|WP_000701057.1\|2530848_2532018_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP019008.1\|WP_078233005.1\|2514220_2516410_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629

Protein	Function_ID	Function_description	E-value
NZ_CP019008.1\|WP_000007273.1\|2532163_2532745_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP019008.1\|WP_078233004.1\|2512908_2513118_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	3.64195e-33
NZ_CP019008.1\|WP_000587585.1\|2518578_2519391_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP019008.1\|WP_001296101.1\|2517124_2517793_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP019008.1\|WP_001182336.1\|2527016_2528228_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP019008.1\|WP_000098896.1\|2525577_2526726_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP019008.1\|WP_001070015.1\|2517789_2518575_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP019008.1\|WP_000190985.1\|2529269_2530295_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP019008.1\|WP_000504336.1\|2516413_2517061_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	8.66973e-123
NZ_CP019008.1\|WP_000212681.1\|2521132_2521438_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP019008.1\|WP_000534260.1\|2522011_2523268_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP019008.1\|WP_000269498.1\|2528340_2529273_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP019008.1\|WP_000493947.1\|2524896_2525538_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP019008.1\|WP_001295403.1\|2510939_2512352_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP019008.1\|WP_000848170.1\|2519402_2521007_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP019008.1\|WP_001174939.1\|2523308_2524682_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP019008.1\|WP_001070248.1\|2513573_2514200_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP019008.1\|WP_000701057.1\|2530848_2532018_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP019008.1\|WP_078233005.1\|2514220_2516410_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0

>NZ_CP019008.1|WP_000212681.1|2521132_2521438_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP019008.1|WP_000848170.1|2519402_2521007_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP019008.1|WP_000587585.1|2518578_2519391_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP019008.1|WP_001070015.1|2517789_2518575_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP019008.1|WP_001296101.1|2517124_2517793_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP019008.1|WP_000504336.1|2516413_2517061_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP019008.1|WP_078233005.1|2514220_2516410_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYCLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP019008.1|WP_001070248.1|2513573_2514200_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP019008.1|WP_078233004.1|2512908_2513118_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQESKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP019008.1|WP_001295403.1|2510939_2512352_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP019008.1|WP_000534260.1|2522011_2523268_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP019008.1|WP_001174939.1|2523308_2524682_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP019008.1|WP_000493947.1|2524896_2525538_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP019008.1|WP_000098896.1|2525577_2526726_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP019008.1|WP_001182336.1|2527016_2528228_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP019008.1|WP_000269498.1|2528340_2529273_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP019008.1|WP_000190985.1|2529269_2530295_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP019008.1|WP_000102278.1|2530593_2530683_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP019008.1|WP_000701057.1|2530848_2532018_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP019008.1|WP_000007273.1|2532163_2532745_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP019008_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019008_3

3214338-3214429

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019008_3

>merge|NZ_CP019008|3|3214338-3214429|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP019008|3|3|3214338-3214429|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019008.1\|WP_001143120.1\|3215469_3215697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP019008.1\|WP_001230247.1\|3222132_3223305_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP019008.1\|WP_000979522.1\|3203588_3203798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019008.1\|WP_001264949.1\|3224099_3225128_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP019008.1\|WP_001063148.1\|3219586_3222133_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP019008.1\|WP_001295943.1\|3212895_3214224_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP019008.1\|WP_001120112.1\|3223434_3224127_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP019008.1\|WP_001295946.1\|3208780_3209872_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP019008.1\|WP_012896765.1\|3209871_3210564_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP019008.1\|WP_001151437.1\|3214852_3215449_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP019008.1\|WP_001044302.1\|3215734_3216976_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP019008.1\|WP_000209903.1\|3218990_3219590_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP019008.1\|WP_000420625.1\|3217510_3218431_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP019008.1\|WP_001001161.1\|3211779_3212370_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP019008.1\|WP_000024569.1\|3218430_3218736_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP019008.1\|WP_001028098.1\|3212380_3212875_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP019008.1\|WP_001126780.1\|3210575_3210962_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP019008.1\|WP_001295947.1\|3203852_3207815_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP019008.1\|WP_001295944.1\|3210969_3211770_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP019008.1\|WP_000191701.1\|3207854_3208493_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970

Protein	Function_ID	Function_description	E-value
NZ_CP019008.1\|WP_001143120.1\|3215469_3215697_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP019008.1\|WP_001230247.1\|3222132_3223305_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP019008.1\|WP_000209903.1\|3218990_3219590_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP019008.1\|WP_001264949.1\|3224099_3225128_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP019008.1\|WP_001063148.1\|3219586_3222133_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP019008.1\|WP_001295943.1\|3212895_3214224_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP019008.1\|WP_001120112.1\|3223434_3224127_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP019008.1\|WP_001295946.1\|3208780_3209872_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP019008.1\|WP_012896765.1\|3209871_3210564_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP019008.1\|WP_001151437.1\|3214852_3215449_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP019008.1\|WP_001044302.1\|3215734_3216976_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP019008.1\|WP_000420625.1\|3217510_3218431_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP019008.1\|WP_001001161.1\|3211779_3212370_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP019008.1\|WP_000024569.1\|3218430_3218736_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP019008.1\|WP_001028098.1\|3212380_3212875_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP019008.1\|WP_001126780.1\|3210575_3210962_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP019008.1\|WP_001295947.1\|3203852_3207815_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP019008.1\|WP_001295944.1\|3210969_3211770_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP019008.1\|WP_000191701.1\|3207854_3208493_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153

>NZ_CP019008.1|WP_001295943.1|3212895_3214224_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP019008.1|WP_001028098.1|3212380_3212875_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP019008.1|WP_001001161.1|3211779_3212370_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP019008.1|WP_001295944.1|3210969_3211770_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP019008.1|WP_001126780.1|3210575_3210962_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP019008.1|WP_012896765.1|3209871_3210564_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP019008.1|WP_001295946.1|3208780_3209872_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP019008.1|WP_000191701.1|3207854_3208493_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP019008.1|WP_001295947.1|3203852_3207815_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP019008.1|WP_000979522.1|3203588_3203798_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP019008.1|WP_001151437.1|3214852_3215449_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP019008.1|WP_001143120.1|3215469_3215697_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP019008.1|WP_001044302.1|3215734_3216976_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP019008.1|WP_000420625.1|3217510_3218431_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP019008.1|WP_000024569.1|3218430_3218736_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP019008.1|WP_000209903.1|3218990_3219590_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP019008.1|WP_001063148.1|3219586_3222133_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP019008.1|WP_001230247.1|3222132_3223305_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP019008.1|WP_001120112.1|3223434_3224127_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP019008.1|WP_001264949.1|3224099_3225128_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP019008_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019008_4

3336075-3336157

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019008_4

>merge|NZ_CP019008|4|3336075-3336157|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP019008|4|4|3336075-3336157|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019008.1\|WP_000491137.1\|3346970_3347870_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP019008.1\|WP_000067797.1\|3322455_3323799_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP019008.1\|WP_000458841.1\|3348013_3349666_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP019008.1\|WP_001202204.1\|3332713_3334435_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP019008.1\|WP_000886683.1\|3321072_3322365_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP019008.1\|WP_001295343.1\|3323809_3324421_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP019008.1\|WP_001040187.1\|3335465_3335684_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP019008.1\|WP_000599803.1\|3343777_3345436_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP019008.1\|WP_000410785.1\|3339318_3339543_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP019008.1\|WP_000746478.1\|3341558_3342674_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP019008.1\|WP_000228473.1\|3328820_3329315_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP019008.1\|WP_001385255.1\|3329858_3330824_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP019008.1\|WP_001241674.1\|3334476_3335181_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP019008.1\|WP_001043561.1\|3330946_3332713_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP019008.1\|WP_000520781.1\|3338675_3338996_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP019008.1\|WP_000934041.1\|3336368_3338645_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP019008.1\|WP_001351020.1\|3342824_3343781_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP019008.1\|WP_000188152.1\|3339615_3341562_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP019008.1\|WP_000077041.1\|3324579_3328686_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP019008.1\|WP_000488716.1\|3345860_3346556_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453

Protein	Function_ID	Function_description	E-value
NZ_CP019008.1\|WP_000491137.1\|3346970_3347870_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP019008.1\|WP_000067797.1\|3322455_3323799_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP019008.1\|WP_000458841.1\|3348013_3349666_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP019008.1\|WP_001202204.1\|3332713_3334435_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019008.1\|WP_000886683.1\|3321072_3322365_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP019008.1\|WP_001295343.1\|3323809_3324421_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP019008.1\|WP_001040187.1\|3335465_3335684_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP019008.1\|WP_000599803.1\|3343777_3345436_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP019008.1\|WP_000410785.1\|3339318_3339543_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP019008.1\|WP_000746478.1\|3341558_3342674_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP019008.1\|WP_000228473.1\|3328820_3329315_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP019008.1\|WP_001385255.1\|3329858_3330824_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP019008.1\|WP_001241674.1\|3334476_3335181_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP019008.1\|WP_001043561.1\|3330946_3332713_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019008.1\|WP_000520781.1\|3338675_3338996_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP019008.1\|WP_000934041.1\|3336368_3338645_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP019008.1\|WP_001351020.1\|3342824_3343781_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP019008.1\|WP_000188152.1\|3339615_3341562_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP019008.1\|WP_000077041.1\|3324579_3328686_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP019008.1\|WP_000488716.1\|3345860_3346556_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144

>NZ_CP019008.1|WP_001040187.1|3335465_3335684_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP019008.1|WP_001241674.1|3334476_3335181_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP019008.1|WP_001202204.1|3332713_3334435_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP019008.1|WP_001043561.1|3330946_3332713_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP019008.1|WP_001385255.1|3329858_3330824_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP019008.1|WP_000228473.1|3328820_3329315_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP019008.1|WP_000077041.1|3324579_3328686_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP019008.1|WP_001295343.1|3323809_3324421_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP019008.1|WP_000067797.1|3322455_3323799_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP019008.1|WP_000886683.1|3321072_3322365_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP019008.1|WP_000934041.1|3336368_3338645_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP019008.1|WP_000520781.1|3338675_3338996_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP019008.1|WP_000410785.1|3339318_3339543_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP019008.1|WP_000188152.1|3339615_3341562_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP019008.1|WP_000746478.1|3341558_3342674_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP019008.1|WP_001351020.1|3342824_3343781_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP019008.1|WP_000599803.1|3343777_3345436_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP019008.1|WP_000488716.1|3345860_3346556_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP019008.1|WP_000491137.1|3346970_3347870_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP019008.1|WP_000458841.1|3348013_3349666_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019008_2	2.1\|2521617\|38\|NZ_CP019008\|CRISPRCasFinder	2521617-2521654	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP019008_3	3.1\|3214364\|40\|NZ_CP019008\|CRISPRCasFinder	3214364-3214403	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95

1. spacer 2.1|2521617|38|NZ_CP019008|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 3.1|3214364|40|NZ_CP019008|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1343600 : 1350740

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279004.1\|1343600_1344239_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5
WP_000590411.1\|1344235_1345498_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|1345494_1346403_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001296319.1\|1346598_1347366_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_001141293.1\|1347416_1348073_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|1348178_1350740_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_2

1927273 : 1936718

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|1927273_1928200_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8
WP_000783109.1\|1928204_1928936_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1928916_1929024_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|1929083_1929815_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|1930036_1931722_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1931718_1932438_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1932484_1932955_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|1932995_1933457_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|1933581_1935585_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|1935581_1936718_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7

DBSCAN-SWA_3

1952524 : 2016162

Escherichia_phage(37.21%)

integrase,head,capsid,terminase,tRNA,tail,lysis,portal,holin,plate

attL 1979863:1979890|attR 2011848:2011875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296226.1\|1952524_1954558_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.4
WP_001005448.1\|1954689_1955799_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001046487.1\|1956061_1956343_+	YehE family protein	NA	NA	NA	NA
WP_000830464.1\|1956635_1957178_+	fimbrial protein	NA	NA	NA	NA
WP_000677331.1\|1957258_1957933_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000945369.1\|1957948_1960429_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000405718.1\|1960444_1961479_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000153067.1\|1961560_1961899_-	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000134616.1\|1962117_1962942_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019944.1\|1963062_1963335_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_001195621.1\|1963557_1964346_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822280.1\|1964342_1965143_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001296225.1\|1965207_1966026_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	2.5e-23	38.0
WP_000434047.1\|1966077_1966824_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000011972.1\|1966797_1967763_-	sugar kinase	NA	NA	NA	NA
WP_000846228.1\|1967759_1968764_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
WP_000858523.1\|1968760_1970038_-	MFS transporter	NA	NA	NA	NA
WP_000129562.1\|1970294_1971347_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000289802.1\|1971573_1972428_+	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000853832.1\|1972456_1973719_+	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000182880.1\|1973728_1974181_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000823284.1\|1974211_1974496_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_061157925.1\|1974499_1975855_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000844234.1\|1975902_1976943_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000178556.1\|1977042_1977822_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000807341.1\|1977903_1978803_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	5.7e-13	29.5
WP_001441996.1\|1979217_1979535_+	hypothetical protein	NA	NA	NA	NA
1979863:1979890	attL	NA	NA	NA	NA
WP_000985256.1\|1979969_1980983_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	1.4e-193	99.1
WP_001306384.1\|1981098_1981398_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.5e-50	100.0
WP_000043869.1\|1981512_1981788_+	hypothetical protein	Q1JS62	Enterobacteria_phage	1.3e-48	100.0
WP_000217670.1\|1981965_1982466_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557703.1\|1982529_1982754_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001277961.1\|1982753_1983056_+	DUF5405 family protein	Q7Y4C1	Escherichia_virus	3.8e-46	99.0
WP_001534949.1\|1983055_1983280_+	TraR family phage/conjugal plasmid C-4 type zinc finger protein	S4TRY6	Salmonella_phage	8.5e-35	98.6
WP_001565038.1\|1983276_1983552_+	hypothetical protein	Q858T5	Yersinia_virus	6.6e-45	98.9
WP_078232983.1\|1983541_1985818_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	98.4
WP_000038201.1\|1986993_1988028_-\|portal	phage portal protein	U5N087	Enterobacteria_phage	8.4e-202	99.7
WP_000156861.1\|1988027_1989800_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_078232984.1\|1989973_1990828_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	3.5e-153	96.8
WP_078232985.1\|1990886_1991960_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.3e-200	99.2
WP_000203418.1\|1991963_1992707_+\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	7.3e-123	97.6
WP_000988633.1\|1992806_1993316_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846399.1\|1993315_1993519_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000123124.1\|1993522_1993804_+\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_001144101.1\|1993803_1994301_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_078232986.1\|1994315_1994741_+	protein lysA	U5N096	Enterobacteria_phage	2.1e-58	97.2
WP_078232987.1\|1994728_1995154_+\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	7.5e-64	93.6
WP_078232988.1\|1995261_1995729_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	4.8e-80	97.4
WP_078232989.1\|1995721_1996174_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	3.4e-75	98.0
WP_078232990.1\|1996240_1996882_+\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	1.8e-98	90.2
WP_000127163.1\|1996878_1997226_+\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001121474.1\|1997230_1998139_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
WP_001285334.1\|1998131_1998662_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	1.0e-102	100.0
WP_078232991.1\|1998672_2001291_+\|tail	phage tail protein	Q858V4	Yersinia_virus	9.0e-285	73.2
WP_078232992.1\|2001290_2001869_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.1e-68	65.4
WP_078232993.1\|2002434_2003637_+	ATP-binding protein	NA	NA	NA	NA
WP_078232994.1\|2003643_2004546_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_001517507.1\|2005146_2006337_+\|tail	phage tail sheath protein	Q858V1	Yersinia_virus	1.1e-224	99.5
WP_001251408.1\|2006349_2006868_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|2006924_2007200_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|2007232_2007352_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_078232995.1\|2007344_2009792_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	94.6
WP_000978911.1\|2009806_2010286_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_073487971.1\|2010285_2011449_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	5.4e-205	97.7
WP_000468308.1\|2011530_2011749_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_078232996.1\|2012019_2013381_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	9.3e-217	99.5
2011848:2011875	attR	NA	NA	NA	NA
WP_000929408.1\|2013527_2013860_-	YegP family protein	NA	NA	NA	NA
WP_000137877.1\|2014039_2014762_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.6
WP_000675176.1\|2014758_2016162_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	7.0e-34	29.8

DBSCAN-SWA_4

2062667 : 2068970

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061157920.1\|2062667_2064062_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.3e-19	33.5
WP_000183032.1\|2064236_2065130_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.9e-46	42.0
WP_061157919.1\|2065501_2066587_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.7e-101	53.9
WP_001023616.1\|2066586_2067486_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.5
WP_000857508.1\|2067544_2068423_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.7e-107	64.1
WP_001100793.1\|2068427_2068970_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_5

2239884 : 2324970

Escherichia_phage(23.81%)

integrase,capsid,terminase,tail,tRNA,portal,holin,plate

attL 2247901:2247917|attR 2283257:2283273

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531780.1\|2239884_2240901_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|2240869_2241133_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|2241342_2241525_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|2241524_2242094_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|2242090_2244307_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|2244337_2244658_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|2245668_2246082_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|2246180_2246411_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|2246469_2246946_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|2246985_2247210_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|2247206_2247962_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
2247901:2247917	attL	NA	NA	NA	NA
WP_000609322.1\|2247951_2249367_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|2249405_2249816_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|2249817_2250054_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|2250050_2250362_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|2250358_2250583_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|2251264_2252053_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|2252227_2253151_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_074159566.1\|2253766_2254576_+	hypothetical protein	NA	NA	NA	NA
WP_000019301.1\|2254693_2255431_-	hypothetical protein	NA	NA	NA	NA
WP_001305361.1\|2255658_2256261_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
WP_001313577.1\|2256659_2257760_+	hypothetical protein	NA	NA	NA	NA
WP_001138663.1\|2258075_2258681_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|2258690_2259179_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_078233000.1\|2259577_2259811_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|2260054_2260696_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|2260847_2261027_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|2261104_2261701_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|2261697_2261991_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|2261990_2262662_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|2262774_2263158_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|2263157_2263430_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|2263429_2263909_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|2263916_2264111_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|2264170_2264416_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|2264784_2265351_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|2265337_2267200_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|2267199_2267433_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|2267429_2269004_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|2269003_2270311_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|2270310_2270640_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|2270698_2271733_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|2271767_2272187_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|2272183_2272564_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|2272595_2273276_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|2273272_2273809_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|2273789_2274692_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|2274694_2275036_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|2275032_2275953_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|2275955_2276582_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_001531771.1\|2276574_2277759_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|2277758_2278148_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|2278144_2279647_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|2279664_2280177_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|2280189_2280471_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|2280579_2282220_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|2282255_2282645_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|2282806_2283031_+	hypothetical protein	NA	NA	NA	NA
WP_001531766.1\|2283034_2284078_+	hypothetical protein	R9TNM7	Vibrio_phage	2.0e-33	28.5
2283257:2283273	attR	NA	NA	NA	NA
WP_001296152.1\|2284244_2284664_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|2285135_2285801_+	UPF0149 family protein YecA	NA	NA	NA	NA
WP_078233001.1\|2285851_2287063_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|2287253_2287493_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|2287530_2288028_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|2288199_2288523_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|2288786_2288873_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|2288987_2289239_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|2289316_2289820_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|2290616_2291606_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001187827.1\|2291675_2293190_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000100203.1\|2293204_2294191_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|2294357_2295158_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|2295132_2296557_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|2296563_2296992_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|2297771_2298122_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|2298124_2298703_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|2298829_2299717_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|2299713_2300640_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|2300644_2302609_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|2302629_2303133_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|2303277_2304939_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|2305229_2306090_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|2306092_2307142_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|2307156_2307546_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_001576788.1\|2307556_2308201_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|2308389_2309538_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|2309530_2311609_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|2311608_2312001_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|2312053_2313787_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|2314002_2314569_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|2314582_2315329_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|2315716_2316817_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|2316841_2319271_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_001576787.1\|2319306_2320278_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|2320274_2321018_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|2321058_2321454_-	hypothetical protein	NA	NA	NA	NA
WP_000639277.1\|2321506_2322325_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|2322321_2322888_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|2323197_2324970_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_6

2970231 : 3018729

Enterobacteria_phage(57.69%)

integrase,head,capsid,terminase,tail,lysis,tRNA,portal

attL 2963582:2963597|attR 3026079:3026094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2963582:2963597	attL	NA	NA	NA	NA
WP_000654168.1\|2970231_2970510_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	57.6
WP_001524535.1\|2970506_2972567_-	hypothetical protein	A0A0E3M194	Enterobacteria_phage	3.3e-125	53.5
WP_001576743.1\|2972625_2976108_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
WP_071589399.1\|2976168_2976801_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.0
WP_000194779.1\|2976737_2977481_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_001576742.1\|2977486_2978185_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.6e-132	98.7
WP_000847330.1\|2978184_2978514_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.6e-58	100.0
WP_001576740.1\|2978510_2981078_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	91.9
WP_000459452.1\|2981070_2981505_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	7.6e-64	99.2
WP_000479173.1\|2981486_2981909_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	95.0
WP_001524522.1\|2981924_2982665_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.1e-131	98.8
WP_001576738.1\|2982672_2983068_-\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.3e-70	99.2
WP_024188916.1\|2983064_2983643_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	6.8e-76	95.3
WP_001576737.1\|2983653_2984007_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.9e-60	96.6
WP_000158881.1\|2984018_2984414_-	hypothetical protein	A0A2R9YJP4	Escherichia_phage	2.6e-55	90.9
WP_000118193.1\|2984455_2985481_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	6.4e-186	96.2
WP_000201478.1\|2985536_2985869_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.7e-51	90.9
WP_078233011.1\|2985878_2987210_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	3.3e-227	96.6
WP_001337540.1\|2987190_2988792_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	99.2
WP_000198149.1\|2988788_2988995_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027282.1\|2988991_2990917_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000453576.1\|2990891_2991437_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
WP_000881610.1\|2992000_2992183_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|2992389_2992716_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|2993196_2993490_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|2993580_2993763_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001101164.1\|2993979_2994513_-	lysozyme	K7PLY1	Enterobacteria_phage	5.8e-98	94.9
WP_001168526.1\|2994647_2994887_+	hypothetical protein	NA	NA	NA	NA
WP_000193273.1\|2994883_2995198_-	YdfR family protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
WP_000839596.1\|2995202_2995418_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737271.1\|2996007_2997090_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_001204794.1\|2997278_2997662_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	2.0e-55	82.5
WP_000971095.1\|2997747_2997888_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.7e-09	72.1
WP_001099697.1\|2997884_2998247_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	95.7
WP_000774475.1\|2998243_2998534_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.3e-46	93.8
WP_000224907.1\|2998526_2998697_-	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_001053004.1\|2998696_2999152_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.2e-59	66.9
WP_072093903.1\|2999148_2999250_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|2999599_3000643_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_033549856.1\|3000679_3004231_-	attachment protein	NA	NA	NA	NA
WP_001576733.1\|3004481_3005183_-	replication protein P	A0A0P0ZD31	Stx2-converting_phage	5.1e-126	97.4
WP_032143200.1\|3005179_3006109_-	replication protein	M1FN81	Enterobacteria_phage	1.6e-111	68.0
WP_001182889.1\|3006195_3006735_-	hypothetical protein	M9NZI6	Enterobacteria_phage	4.0e-62	66.7
WP_001576731.1\|3006804_3007035_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	2.1e-20	66.7
WP_000858972.1\|3007139_3007829_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	4.7e-92	75.0
WP_024187901.1\|3007934_3008948_+	hypothetical protein	NA	NA	NA	NA
WP_023148105.1\|3009766_3010057_+	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000995439.1\|3010132_3010429_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|3010434_3011220_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|3011216_3011897_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|3011893_3012076_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|3012048_3012240_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|3012250_3012532_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|3012630_3012852_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|3012851_3013178_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|3013161_3013401_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|3013540_3013777_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|3013766_3014909_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|3015022_3016273_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|3016444_3017098_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|3017107_3017569_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|3017622_3018729_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3026079:3026094	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3452726 : 3491675

Enterobacteria_phage(63.16%)

integrase,head,terminase,lysis,transposase,coat,portal,holin

attL 3452093:3452107|attR 3491749:3491763

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3452093:3452107	attL	NA	NA	NA	NA
WP_078233019.1\|3452726_3455672_-	peptidase S74	A5VW57	Enterobacteria_phage	0.0e+00	98.8
WP_000532176.1\|3455818_3456070_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	6.6e-36	91.6
WP_078233020.1\|3456086_3456506_-	hypothetical protein	B9UDL3	Salmonella_phage	5.6e-72	97.1
WP_000749287.1\|3456640_3457126_+	hypothetical protein	NA	NA	NA	NA
WP_021552852.1\|3457216_3459214_-	hypothetical protein	Q716G2	Shigella_phage	0.0e+00	96.7
WP_078233021.1\|3459213_3460515_-	acyltransferase	Q716G3	Shigella_phage	1.6e-165	82.7
WP_001544386.1\|3460524_3461205_-	hypothetical protein	G5DA80	Enterobacteria_phage	1.5e-53	73.7
WP_021571701.1\|3461191_3461659_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.8e-64	74.0
WP_078233022.1\|3461658_3462612_-	hypothetical protein	Q716G6	Shigella_phage	1.7e-92	83.9
WP_078233023.1\|3462611_3464030_-	hypothetical protein	Q9AYZ4	Salmonella_phage	4.6e-275	99.2
WP_001140510.1\|3464039_3464501_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
WP_001389518.1\|3464481_3464670_-	hypothetical protein	A0A088CPR7	Enterobacteria_phage	2.9e-28	100.0
WP_078233024.1\|3464711_3465965_-\|coat	coat protein	A0A088CQ56	Enterobacteria_phage	2.2e-236	99.5
WP_021529417.1\|3465983_3466877_-	phage scaffold protein	A0A088CPT0	Enterobacteria_phage	1.7e-129	98.7
WP_021538737.1\|3466967_3469166_-\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	99.6
WP_057695722.1\|3469167_3470583_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	8.9e-279	99.8
WP_000113732.1\|3470579_3471020_-	hypothetical protein	C7U0V7	Enterobacteria_phage	1.7e-79	99.3
WP_000807788.1\|3471022_3471265_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_001109020.1\|3471492_3472035_-	Rha family transcriptional regulator	A5VW78	Enterobacteria_phage	1.4e-99	100.0
WP_001139680.1\|3472241_3472394_-	hypothetical protein	K7PKL2	Enterobacteria_phage	1.2e-21	100.0
WP_097451629.1\|3472381_3472819_-\|lysis	lysis protein	Q716B4	Shigella_phage	3.8e-71	98.6
WP_000229407.1\|3472815_3473292_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	8.3e-88	99.4
WP_000783734.1\|3473275_3473599_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_078233025.1\|3474059_3474578_-	DUF1133 family protein	Q716B8	Shigella_phage	3.2e-93	98.3
WP_000994516.1\|3474574_3474763_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_078233026.1\|3474759_3475122_-	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	2.0e-62	99.2
WP_000002243.1\|3475118_3475409_-	DUF1364 domain-containing protein	K7PKV0	Enterobacteria_phage	3.4e-52	100.0
WP_001286917.1\|3475401_3475614_-	hypothetical protein	K7PK10	Enterobacteria_phage	1.6e-35	100.0
WP_016262210.1\|3475606_3475783_-	protein ninF	G9L691	Escherichia_phage	7.4e-26	98.3
WP_000386657.1\|3475782_3476142_-	DUF2591 domain-containing protein	G8EYI2	Enterobacteria_phage	1.2e-62	95.8
WP_029394717.1\|3476144_3476321_-	NinE family protein	K7P7K5	Enterobacteria_phage	2.7e-28	98.3
WP_047671587.1\|3476317_3476728_-	recombination protein NinB	K7PJW4	Enterobacteria_phage	2.3e-70	97.8
WP_078233027.1\|3476730_3477045_-	hypothetical protein	K7PKU8	Enterobacteria_phage	1.2e-53	99.0
WP_078233028.1\|3477062_3477269_-	hypothetical protein	K7P7Y0	Enterobacteria_phage	1.7e-29	95.6
WP_078233029.1\|3477346_3479227_-	bifunctional DNA primase/helicase	K7PK08	Enterobacteria_phage	0.0e+00	99.7
WP_000067068.1\|3479334_3480195_-	replication protein	K7PL20	Enterobacteria_phage	4.3e-159	99.7
WP_000166207.1\|3480187_3480334_-	DUF2740 domain-containing protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
WP_000251072.1\|3480366_3480660_-	hypothetical protein	A5VW96	Enterobacteria_phage	1.7e-46	100.0
WP_000067728.1\|3480779_3480995_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	8.2e-35	98.6
WP_001519589.1\|3481070_3481766_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	1.3e-129	96.5
WP_001317717.1\|3482258_3482582_+	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
WP_085929673.1\|3482661_3483830_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_078233030.1\|3483886_3484321_-	hypothetical protein	K7P861	Enterobacteria_phage	7.1e-70	99.3
WP_001308813.1\|3484516_3484792_+	hypothetical protein	K7PGS9	Enterobacteria_phage	1.6e-46	100.0
WP_021499331.1\|3485048_3485654_+	ERF family protein	Q9MCQ9	Enterobacteria_phage	9.2e-108	99.5
WP_021516166.1\|3485653_3486037_+	hypothetical protein	A0A2I6PID1	Escherichia_phage	6.5e-67	98.4
WP_078233031.1\|3486060_3486357_+	DUF2856 family protein	A5VWB0	Enterobacteria_phage	4.3e-50	96.9
WP_000855558.1\|3486367_3486658_+	hypothetical protein	K7P7M4	Enterobacteria_phage	3.7e-46	100.0
WP_042108347.1\|3486654_3486819_+	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	1.3e-21	96.3
WP_078233032.1\|3486815_3487376_+	hypothetical protein	Q76H44	Enterobacteria_phage	2.1e-58	68.3
WP_078233033.1\|3487372_3488239_+	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	2.5e-154	87.3
WP_000212745.1\|3488240_3488528_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	3.5e-49	98.9
WP_078233034.1\|3488531_3489404_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.2e-111	71.5
WP_078233035.1\|3489396_3489681_+	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	1.0e-45	91.5
WP_000545737.1\|3489753_3489921_+	hypothetical protein	A5VWB7	Enterobacteria_phage	9.8e-28	100.0
WP_001281197.1\|3489948_3490293_+	hypothetical protein	K7PJY7	Enterobacterial_phage	2.0e-59	99.1
WP_001303849.1\|3490408_3490627_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_001608901.1\|3490604_3491675_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
3491749:3491763	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection