CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	0 crisprs	DEDDh	0	2
NZ_CP019015	Escherichia coli strain Ecol_AZ162 chromosome, complete genome	4 crisprs	DEDDh,cas3,RT,WYL,c2c9_V-U4,csa3,DinG	4	12
NZ_CP019014	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_KPC, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 97065

114

Salmonella_phage(88.57%)

protease,tRNA,tail,terminase,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000627054.1\|1019_1451_+	hypothetical protein	J9Q6I8	Salmonella_phage	1.5e-64	86.7
WP_000047684.1\|1568_2597_+	hypothetical protein	J9Q7Z3	Salmonella_phage	1.4e-143	86.3
WP_001108395.1\|2657_3602_+	hypothetical protein	J9Q7S6	Salmonella_phage	2.3e-166	90.8
WP_000920224.1\|3601_3868_+	hypothetical protein	J9Q7G8	Salmonella_phage	2.6e-30	77.3
WP_160378289.1\|3915_4944_+	recombinase	J9Q736	Salmonella_phage	1.1e-188	94.7
WP_021533191.1\|5036_5237_+	hypothetical protein	J9Q6J0	Salmonella_phage	7.2e-09	59.1
WP_000715581.1\|5240_6071_+	hypothetical protein	J9Q7Z4	Salmonella_phage	3.1e-122	94.9
WP_022644979.1\|6162_6588_+	hypothetical protein	J9Q7G9	Salmonella_phage	5.5e-59	74.6
WP_022644978.1\|6643_6919_+	hypothetical protein	J9Q738	Salmonella_phage	2.6e-33	74.7
WP_001404454.1\|7134_7470_+	hypothetical protein	J9Q7Z5	Salmonella_phage	8.6e-39	73.9
WP_001229345.1\|7469_7682_+	hypothetical protein	J9Q7S8	Salmonella_phage	3.4e-33	94.3
WP_001348683.1\|8261_9476_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	8.4e-76	45.4
WP_000364573.1\|9677_10322_+	hypothetical protein	J9Q739	Salmonella_phage	2.9e-107	86.3
WP_000174804.1\|10576_11662_+	exonuclease	J9Q7S9	Salmonella_phage	6.8e-186	87.3
WP_001404451.1\|11891_13808_+	AAA family ATPase	J9Q741	Salmonella_phage	4.5e-249	73.2
WP_014962287.1\|13797_14541_+	hypothetical protein	J9Q6J5	Salmonella_phage	7.5e-51	46.8
WP_022644977.1\|14550_15120_+	hypothetical protein	J9Q7Z7	Salmonella_phage	6.7e-92	87.3
WP_000623685.1\|15193_17509_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	84.4
WP_000122502.1\|17615_18758_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.6e-196	88.7
WP_001011859.1\|18835_19705_+	hypothetical protein	J9Q742	Salmonella_phage	3.1e-133	81.0
WP_022644976.1\|19876_20980_+	thymidylate synthase	J9Q6J6	Salmonella_phage	3.2e-191	86.9
WP_022644975.1\|20981_21395_+	hypothetical protein	J9Q7Z8	Salmonella_phage	3.6e-63	85.4
WP_160384356.1\|21397_21868_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	3.7e-80	89.7
WP_000386469.1\|21867_22512_+	AAA family ATPase	J9Q7H4	Salmonella_phage	7.8e-97	81.3
WP_001718079.1\|22573_22993_+	hypothetical protein	J9Q743	Salmonella_phage	3.2e-51	71.9
WP_016607532.1\|23002_23560_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.7e-87	83.1
WP_000099880.1\|23718_24528_+	hypothetical protein	J9Q7Z9	Salmonella_phage	3.4e-65	53.2
WP_000559570.1\|24711_25305_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	3.4e-99	86.3
WP_000121543.1\|25490_25721_+	hypothetical protein	J9Q7H5	Salmonella_phage	5.9e-31	84.2
WP_022644973.1\|26303_26894_+	ribonuclease HI	J9Q745	Salmonella_phage	6.2e-93	83.2
WP_021512350.1\|27042_27537_+	hypothetical protein	J9Q6J9	Salmonella_phage	3.0e-24	56.2
WP_001103988.1\|27546_27735_+	hypothetical protein	J9Q800	Salmonella_phage	7.2e-11	53.2
WP_000900261.1\|27828_28254_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	5.7e-56	78.7
WP_000893470.1\|28253_28412_+	DUF3927 family protein	NA	NA	NA	NA
WP_022644972.1\|28551_29118_+	hypothetical protein	J9Q7H6	Salmonella_phage	7.7e-56	64.2
WP_022644971.1\|29259_30945_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	92.2
WP_022644970.1\|31005_31710_+	hypothetical protein	J9Q6K2	Salmonella_phage	2.1e-87	76.4
WP_022644969.1\|31709_32090_+	hypothetical protein	J9Q801	Salmonella_phage	1.3e-27	68.6
WP_022644968.1\|32209_32851_+	HD domain-containing protein	J9Q7H7	Salmonella_phage	5.4e-98	86.4
WP_022644967.1\|32847_33390_+	hypothetical protein	J9Q748	Salmonella_phage	1.4e-86	87.4
WP_022644966.1\|33389_33896_+	hypothetical protein	A0A222YY85	Escherichia_phage	2.4e-16	54.7
WP_022644965.1\|33892_34192_+	hypothetical protein	A5VWB2	Enterobacteria_phage	4.8e-57	97.0
WP_022644964.1\|34193_34916_+	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	1.8e-89	78.7
WP_022644963.1\|34917_35241_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	A0A222YZB4	Escherichia_phage	1.9e-43	89.2
WP_022644962.1\|35237_35768_+	hypothetical protein	A0A2I6TCG8	Escherichia_phage	2.6e-34	70.9
WP_001355905.1\|35764_35950_+	hypothetical protein	NA	NA	NA	NA
WP_022644961.1\|35949_36603_+	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	1.2e-44	78.7
WP_000108704.1\|36979_37606_+	hypothetical protein	C6ZR26	Salmonella_phage	1.2e-06	68.4
WP_000506720.1\|38407_38797_+	DNA repair protein	A0A077SK24	Escherichia_phage	8.6e-67	93.0
WP_000004356.1\|38834_39935_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001755492.1\|40092_42126_+\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.2e-44	24.1
WP_001717178.1\|42365_42587_+	hypothetical protein	J9Q750	Salmonella_phage	1.9e-18	58.2
WP_000910476.1\|42623_42809_+	hypothetical protein	NA	NA	NA	NA
WP_022644959.1\|42970_43531_+	hypothetical protein	NA	NA	NA	NA
WP_162535791.1\|45115_45331_+	hypothetical protein	J9Q804	Salmonella_phage	5.5e-31	88.7
WP_022644956.1\|45469_45799_+	hypothetical protein	NA	NA	NA	NA
WP_000749407.1\|45952_46264_+	hypothetical protein	J9Q7T7	Salmonella_phage	5.7e-29	63.1
WP_000216801.1\|46390_46786_+	hypothetical protein	J9Q7I1	Salmonella_phage	3.1e-32	54.6
WP_023908299.1\|46867_47278_+	hypothetical protein	NA	NA	NA	NA
WP_022644955.1\|47628_48111_+	hypothetical protein	J9Q805	Salmonella_phage	3.6e-62	69.8
WP_000497810.1\|48726_48957_-	hypothetical protein	NA	NA	NA	NA
WP_022644954.1\|48978_49182_-	hypothetical protein	J9Q7I3	Salmonella_phage	4.0e-23	82.1
WP_022644953.1\|49230_49881_-	hypothetical protein	J9Q754	Salmonella_phage	1.3e-99	85.2
WP_024181930.1\|50164_50344_-	hypothetical protein	NA	NA	NA	NA
WP_000208379.1\|50476_51001_-	hypothetical protein	J9Q6L0	Salmonella_phage	2.8e-68	82.4
WP_024171469.1\|51005_51428_-	hypothetical protein	J9Q806	Salmonella_phage	4.8e-55	77.1
WP_001291060.1\|51496_51775_-	hypothetical protein	J9Q7T9	Salmonella_phage	2.2e-24	62.6
WP_000218380.1\|51777_53337_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	8.9e-280	93.1
WP_000382660.1\|53419_54100_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.7e-108	88.1
WP_022644991.1\|54099_54768_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-106	89.2
WP_000049675.1\|54764_55403_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.2e-110	98.6
WP_001113022.1\|55395_55650_+	hypothetical protein	J9Q7U0	Salmonella_phage	5.9e-40	96.4
WP_000763393.1\|55655_56546_+	hypothetical protein	J9Q7I6	Salmonella_phage	9.9e-167	98.3
WP_000176292.1\|56555_56822_+	hypothetical protein	J9Q757	Salmonella_phage	1.4e-36	88.6
WP_000215413.1\|57017_57650_+	hypothetical protein	J9Q6D4	Salmonella_phage	1.8e-90	83.8
WP_001007300.1\|57649_58906_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	3.4e-245	96.9
WP_001717193.1\|58932_60507_+\|portal	phage portal protein	J9Q7R1	Salmonella_phage	2.2e-286	93.1
WP_001055286.1\|60528_61416_+	hypothetical protein	J9Q7F4	Salmonella_phage	1.6e-132	87.9
WP_001130340.1\|61441_62317_+	hypothetical protein	J9Q710	Salmonella_phage	5.0e-155	94.5
WP_022644990.1\|62390_63311_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	7.4e-133	84.2
WP_000801185.1\|63355_63790_+	hypothetical protein	J9Q7Y3	Salmonella_phage	1.1e-59	82.6
WP_000057118.1\|63789_64623_+	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-141	92.1
WP_001027663.1\|64702_65047_+	hypothetical protein	J9Q7F6	Salmonella_phage	2.3e-55	95.6
WP_000523628.1\|65037_65511_+	hypothetical protein	J9Q711	Salmonella_phage	3.3e-76	90.4
WP_000469440.1\|65512_65896_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.2e-57	82.7
WP_022644989.1\|65970_66717_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	1.8e-121	93.1
WP_000163861.1\|66772_67090_+	hypothetical protein	J9Q7R3	Salmonella_phage	8.6e-49	96.2
WP_000952686.1\|67215_67440_+	hypothetical protein	J9Q7F7	Salmonella_phage	8.8e-32	94.6
WP_022644988.1\|67447_71998_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	85.2
WP_000442112.1\|72040_72376_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	8.0e-53	87.3
WP_000511446.1\|72458_73157_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	5.1e-134	97.0
WP_000526938.1\|73149_73947_+	hypothetical protein	J9Q7R4	Salmonella_phage	5.9e-155	94.3
WP_022644987.1\|73934_74525_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.2e-105	94.9
WP_022644986.1\|74542_79267_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	74.7
WP_032140909.1\|81442_83518_+	chaperone of endosialidase	Q71TP5	Escherichia_phage	1.4e-59	68.6
WP_000120169.1\|83578_83833_+	hypothetical protein	J9Q7R5	Salmonella_phage	3.0e-28	67.9
WP_000274392.1\|83832_84441_+	hypothetical protein	J9Q7G0	Salmonella_phage	2.6e-78	74.3
WP_000064175.1\|84763_85087_+	hypothetical protein	J9Q6E7	Salmonella_phage	2.9e-44	88.8
WP_000856757.1\|85100_85793_+	hypothetical protein	J9Q7Y7	Salmonella_phage	6.2e-124	94.3
WP_022644984.1\|85794_86046_+	hypothetical protein	J9Q7R6	Salmonella_phage	8.7e-28	83.1
WP_000931257.1\|86418_86802_+	hypothetical protein	A0A077SLR3	Escherichia_phage	1.3e-11	43.3
WP_000035506.1\|86786_87539_+	hypothetical protein	J9Q7Y8	Salmonella_phage	3.5e-16	31.1
WP_000161228.1\|87715_88384_+	AAA family ATPase	J9Q7R7	Salmonella_phage	1.7e-110	91.4
WP_160378290.1\|88389_88743_+	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_001404393.1\|88803_89862_-	hypothetical protein	A0A2I7RNF6	Vibrio_phage	5.8e-65	43.8
WP_001717320.1\|90151_90892_+	hypothetical protein	J9Q7R8	Salmonella_phage	2.2e-127	89.6
WP_000137333.1\|90935_92276_+	AAA family ATPase	J9Q7G4	Salmonella_phage	3.4e-235	93.5
WP_001404467.1\|92423_93539_+	hypothetical protein	J9Q720	Salmonella_phage	2.6e-209	93.8
WP_021520122.1\|93614_94397_+	hypothetical protein	J9Q7Z0	Salmonella_phage	3.4e-54	41.1
WP_106361768.1\|94452_94935_+	hypothetical protein	J9Q7R9	Salmonella_phage	1.1e-50	70.6
WP_022644983.1\|94931_96254_+	hypothetical protein	J9Q7G5	Salmonella_phage	1.3e-239	90.7
WP_000979130.1\|96250_96430_+	hypothetical protein	J9Q729	Salmonella_phage	1.4e-16	72.4
WP_000636536.1\|96413_96629_+	hypothetical protein	J9Q6I3	Salmonella_phage	9.7e-20	72.1
WP_000067985.1\|96774_97065_+	hypothetical protein	J9Q7S1	Salmonella_phage	2.4e-37	79.2

DBSCAN-SWA_2

100310 : 106252

Salmonella_phage(50.0%)

integrase

attL 96625:96644|attR 106679:106698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
96625:96644	attL	NA	NA	NA	NA
WP_000869625.1\|100310_100556_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	7.7e-13	46.2
WP_000797846.1\|100766_101870_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.3e-27	33.8
WP_001282577.1\|101864_102251_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_001098352.1\|102501_102714_+	hypothetical protein	NA	NA	NA	NA
WP_022644981.1\|102812_104921_+	hypothetical protein	J9Q7G6	Salmonella_phage	6.3e-228	66.5
WP_000213833.1\|105016_106252_+	AAA domain-containing protein	J9Q733	Salmonella_phage	6.7e-198	81.3
106679:106698	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019015_1

36801-36883

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019015_1

>merge|NZ_CP019015|1|36801-36883|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP019015|1|1|36801-36883|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019015.1\|WP_001241674.1\|35202_35907_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP019015.1\|WP_000491137.1\|47696_48596_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP019015.1\|WP_000410785.1\|40044_40269_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP019015.1\|WP_000599803.1\|44503_46162_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP019015.1\|WP_000886683.1\|21798_23091_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP019015.1\|WP_000746478.1\|42284_43400_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP019015.1\|WP_162751178.1\|43550_44507_+\|DUF535-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP019015.1\|WP_000188152.1\|40341_42288_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP019015.1\|WP_000458841.1\|48739_50392_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP019015.1\|WP_000520781.1\|39401_39722_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP019015.1\|WP_000934041.1\|37094_39371_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP019015.1\|WP_001385255.1\|30584_31550_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP019015.1\|WP_000488716.1\|46586_47282_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP019015.1\|WP_001040187.1\|36191_36410_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP019015.1\|WP_001043561.1\|31672_33439_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP019015.1\|WP_000228473.1\|29546_30041_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP019015.1\|WP_000077041.1\|25305_29412_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP019015.1\|WP_001202204.1\|33439_35161_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP019015.1\|WP_001295343.1\|24535_25147_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP019015.1\|WP_000067797.1\|23181_24525_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
NZ_CP019015.1\|WP_001241674.1\|35202_35907_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP019015.1\|WP_000491137.1\|47696_48596_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP019015.1\|WP_000410785.1\|40044_40269_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP019015.1\|WP_000599803.1\|44503_46162_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP019015.1\|WP_000886683.1\|21798_23091_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP019015.1\|WP_000746478.1\|42284_43400_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP019015.1\|WP_162751178.1\|43550_44507_+\|DUF535-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	6.48764e-130
NZ_CP019015.1\|WP_000188152.1\|40341_42288_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP019015.1\|WP_000458841.1\|48739_50392_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP019015.1\|WP_000520781.1\|39401_39722_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP019015.1\|WP_000934041.1\|37094_39371_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP019015.1\|WP_001385255.1\|30584_31550_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP019015.1\|WP_000488716.1\|46586_47282_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP019015.1\|WP_001040187.1\|36191_36410_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP019015.1\|WP_001043561.1\|31672_33439_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019015.1\|WP_000228473.1\|29546_30041_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP019015.1\|WP_000077041.1\|25305_29412_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP019015.1\|WP_001202204.1\|33439_35161_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019015.1\|WP_001295343.1\|24535_25147_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP019015.1\|WP_000067797.1\|23181_24525_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>NZ_CP019015.1|WP_001040187.1|36191_36410_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP019015.1|WP_001241674.1|35202_35907_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP019015.1|WP_001202204.1|33439_35161_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP019015.1|WP_001043561.1|31672_33439_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP019015.1|WP_001385255.1|30584_31550_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP019015.1|WP_000228473.1|29546_30041_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP019015.1|WP_000077041.1|25305_29412_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP019015.1|WP_001295343.1|24535_25147_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP019015.1|WP_000067797.1|23181_24525_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP019015.1|WP_000886683.1|21798_23091_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP019015.1|WP_000934041.1|37094_39371_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP019015.1|WP_000520781.1|39401_39722_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP019015.1|WP_000410785.1|40044_40269_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP019015.1|WP_000188152.1|40341_42288_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP019015.1|WP_000746478.1|42284_43400_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP019015.1|WP_162751178.1|43550_44507_+|DUF535-family-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRHYEMLDAIQPQMATMFCS
>NZ_CP019015.1|WP_000599803.1|44503_46162_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP019015.1|WP_000488716.1|46586_47282_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP019015.1|WP_000491137.1|47696_48596_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP019015.1|WP_000458841.1|48739_50392_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP019015_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019015_2

4263584-4263707

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019015_2

>merge|NZ_CP019015|2|4263584-4263707|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP019015|2|2|4263584-4263707|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019015.1\|WP_000701057.1\|4272858_4274028_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP019015.1\|WP_001182336.1\|4269026_4270238_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP019015.1\|WP_000528342.1\|4255005_4255215_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP019015.1\|WP_001273524.1\|4256317_4258420_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP019015.1\|WP_001296101.1\|4259134_4259803_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP019015.1\|WP_000212681.1\|4263142_4263448_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP019015.1\|WP_001070015.1\|4259799_4260585_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP019015.1\|WP_000098896.1\|4267587_4268736_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP019015.1\|WP_000534260.1\|4264021_4265278_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP019015.1\|WP_000269498.1\|4270350_4271283_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP019015.1\|WP_001070248.1\|4255670_4256297_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP019015.1\|WP_000102278.1\|4272603_4272693_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP019015.1\|WP_001295403.1\|4253036_4254449_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP019015.1\|WP_000848170.1\|4261412_4263017_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP019015.1\|WP_000007273.1\|4274173_4274755_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP019015.1\|WP_000493947.1\|4266906_4267548_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP019015.1\|WP_000587585.1\|4260588_4261401_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP019015.1\|WP_000190985.1\|4271279_4272305_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP019015.1\|WP_001296102.1\|4258432_4259071_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP019015.1\|WP_001174939.1\|4265318_4266692_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981

Protein	Function_ID	Function_description	E-value
NZ_CP019015.1\|WP_000701057.1\|4272858_4274028_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP019015.1\|WP_001182336.1\|4269026_4270238_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP019015.1\|WP_000528342.1\|4255005_4255215_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP019015.1\|WP_001273524.1\|4256317_4258420_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP019015.1\|WP_001296101.1\|4259134_4259803_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP019015.1\|WP_000212681.1\|4263142_4263448_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP019015.1\|WP_001070015.1\|4259799_4260585_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP019015.1\|WP_000098896.1\|4267587_4268736_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP019015.1\|WP_000534260.1\|4264021_4265278_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP019015.1\|WP_000269498.1\|4270350_4271283_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP019015.1\|WP_001070248.1\|4255670_4256297_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP019015.1\|WP_001295403.1\|4253036_4254449_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP019015.1\|WP_000848170.1\|4261412_4263017_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP019015.1\|WP_000007273.1\|4274173_4274755_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP019015.1\|WP_000493947.1\|4266906_4267548_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP019015.1\|WP_000587585.1\|4260588_4261401_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP019015.1\|WP_000190985.1\|4271279_4272305_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP019015.1\|WP_001296102.1\|4258432_4259071_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.79235e-121
NZ_CP019015.1\|WP_001174939.1\|4265318_4266692_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0

>NZ_CP019015.1|WP_000212681.1|4263142_4263448_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP019015.1|WP_000848170.1|4261412_4263017_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP019015.1|WP_000587585.1|4260588_4261401_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP019015.1|WP_001070015.1|4259799_4260585_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP019015.1|WP_001296101.1|4259134_4259803_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP019015.1|WP_001296102.1|4258432_4259071_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP019015.1|WP_001273524.1|4256317_4258420_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP019015.1|WP_001070248.1|4255670_4256297_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP019015.1|WP_000528342.1|4255005_4255215_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP019015.1|WP_001295403.1|4253036_4254449_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP019015.1|WP_000534260.1|4264021_4265278_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP019015.1|WP_001174939.1|4265318_4266692_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP019015.1|WP_000493947.1|4266906_4267548_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP019015.1|WP_000098896.1|4267587_4268736_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP019015.1|WP_001182336.1|4269026_4270238_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP019015.1|WP_000269498.1|4270350_4271283_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP019015.1|WP_000190985.1|4271279_4272305_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP019015.1|WP_000102278.1|4272603_4272693_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP019015.1|WP_000701057.1|4272858_4274028_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP019015.1|WP_000007273.1|4274173_4274755_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP019015_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019015_3

4806935-4807048

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019015_3

>merge|NZ_CP019015|3|4806935-4807048|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP019015|3|1|4806935-4807048|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019015.1\|WP_001099488.1\|4798460_4798823_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_CP019015.1\|WP_000788794.1\|4805770_4806472_-\|replication-protein-P-of-bacteriophage	unknown	unknown	gnl\|CDD\|369163
NZ_CP019015.1\|WP_022645049.1\|4801255_4805521_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP019015.1\|WP_021533932.1\|4812113_4812395_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP019015.1\|WP_001182900.1\|4807484_4808024_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP019015.1\|WP_000995418.1\|4809995_4810292_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP019015.1\|WP_000774479.1\|4798819_4799110_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP019015.1\|WP_000233576.1\|4809713_4809920_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP019015.1\|WP_000700202.1\|4800175_4801219_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP019015.1\|WP_000548516.1\|4811911_4812103_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP019015.1\|WP_000100847.1\|4810297_4811083_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP019015.1\|WP_072147164.1\|4799724_4799826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019015.1\|WP_000971096.1\|4798323_4798464_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP019015.1\|WP_001053005.1\|4799272_4799728_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP019015.1\|WP_001097224.1\|4797637_4798327_-\|antiterminator-Q	unknown	unknown	gnl\|CDD\|368843
NZ_CP019015.1\|WP_000224914.1\|4799102_4799273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP019015.1\|WP_001067458.1\|4808093_4808324_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP019015.1\|WP_000149537.1\|4811756_4811939_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP019015.1\|WP_000259990.1\|4808362_4809118_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP019015.1\|WP_000186848.1\|4811079_4811760_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216

Protein	Function_ID	Function_description	E-value
NZ_CP019015.1\|WP_001099488.1\|4798460_4798823_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	5.2666e-72
NZ_CP019015.1\|WP_000788794.1\|4805770_4806472_-\|replication-protein-P-of-bacteriophage	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.10349e-80
NZ_CP019015.1\|WP_022645049.1\|4801255_4805521_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.77506e-127
NZ_CP019015.1\|WP_001182900.1\|4807484_4808024_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	4.83697e-38
NZ_CP019015.1\|WP_000995418.1\|4809995_4810292_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	4.88161e-52
NZ_CP019015.1\|WP_000774479.1\|4798819_4799110_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	8.41611e-49
NZ_CP019015.1\|WP_000700202.1\|4800175_4801219_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.88698e-30
NZ_CP019015.1\|WP_000548516.1\|4811911_4812103_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	1.05312e-21
NZ_CP019015.1\|WP_000100847.1\|4810297_4811083_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP019015.1\|WP_000233576.1\|4809713_4809920_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP019015.1\|WP_001053005.1\|4799272_4799728_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.40549e-94
NZ_CP019015.1\|WP_001097224.1\|4797637_4798327_-\|antiterminator-Q	gnl\|CDD\|368843	pfam06323, Phage_antiter_Q, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 82 gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator.	4.35962e-97
NZ_CP019015.1\|WP_000224914.1\|4799102_4799273_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP019015.1\|WP_001067458.1\|4808093_4808324_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP019015.1\|WP_000149537.1\|4811756_4811939_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	6.23812e-34
NZ_CP019015.1\|WP_000259990.1\|4808362_4809118_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.29853e-28
NZ_CP019015.1\|WP_000186848.1\|4811079_4811760_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	3.63434e-29

>NZ_CP019015.1|WP_000788794.1|4805770_4806472_-|replication-protein-P-of-bacteriophage
MKNIAAQMINFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVSDGMRVARRQNRPFLPSPGQFVAWCREEASVTAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELACMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGAMK
>NZ_CP019015.1|WP_022645049.1|4801255_4805521_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MTTVNKKLKKTASGAITWSVIVTQILSPVSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLPESVQGEGESIIPVTLTINNASGGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYKSEGVNSWNVGATVQDNRGNVSNYAVMNISVTDSGVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLTAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLSIKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDSQGNAITGDNTLSFYALNQAEGVEFGTVTEKDGVYSATVTSKRAGKITIGVKSDSHDFSGVKKEITFIEDRQQVTFSQFEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGSQMSTELTVTFASNMTGASLSLTPESSSLISNIPANGKDAAVLDVQLTNTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDVASAELNMSVSKQEIVADGSENATVNIQLVDANNNAFTGEVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQAEYVLDGKRITASQNIDAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSGRALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVEFSAGSEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAKITNSKNTYEKTIRTYVVKLPEKDS
>NZ_CP019015.1|WP_000700202.1|4800175_4801219_+|alpha/beta-hydrolase
MKINKILSSATLLYGMSMAMSVGSCATPVQTNLPGYTPGADIISVSPTRNQVDLIGDVVYSQIKGTRSVRQLHMSVLVPRTNDLKPAIIYYPGGGFMSSEHDKFIEMRMALAEAGFVVAAVEYRTIPDTFPAPVEDGKAAIRYLREHASNYGIDPQRIGVLGDSAGGWLAQMMGTTNGDKTFDKGDFLQQSSDVQAVATLYGISDLLNIGEGFPESVQEVHRSPAVTEALMINGPAFRNFAGAPITASKEKALNASPIGHMKGVKPPFLIMHGSKDTLVSPEQSAKLFRMLKKNGDNAEYVLVEGAEHGDKTWYQPIIINRVVEWFTKNLGAPIKTAPQQQNPNANL
>NZ_CP019015.1|WP_072147164.1|4799724_4799826_-|hypothetical-protein
MRTHNPNSLLPSQMQKCTCVFLHLASDLCGGEA
>NZ_CP019015.1|WP_001053005.1|4799272_4799728_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFIAIGQQIQPYLENGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP019015.1|WP_000224914.1|4799102_4799273_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP019015.1|WP_000774479.1|4798819_4799110_-|DUF1364-domain-containing-protein
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLAGLCGTGIKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
>NZ_CP019015.1|WP_001099488.1|4798460_4798823_-|RusA-family-crossover-junction-endodeoxyribonuclease
MNTYCITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKNAMLDIGLAIPVKISIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITELGDE
>NZ_CP019015.1|WP_000971096.1|4798323_4798464_-|YlcG-family-protein
MMFESYMAERLRRRWVRLRLYRFPSSVLTDYRILKNYAKTLKGAAA
>NZ_CP019015.1|WP_001097224.1|4797637_4798327_-|antiterminator-Q
MNTQYLQYVREQLIVATADLSGATKGQLEAWLEHAQFDTGTYKRKKPRILDEVTGRMITLDNPPISGKQLYAKGSSIALVSQVEFSTSSWRRAVLSLEEHQKAWLLWSYSESVRWEHQVTITQWAWSEFKTLLGTRKIAGKTLERLKKLIWLAAQDVKNELAGRKTYEYQELASLVGVTSKNWSETFTERWVAMKHIFLQLDSQALLLLTKTRSKQKTIFSQQDIAKLD
>NZ_CP019015.1|WP_001182900.1|4807484_4808024_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYLEQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP019015.1|WP_001067458.1|4808093_4808324_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP019015.1|WP_000259990.1|4808362_4809118_+|helix-turn-helix-transcriptional-regulator
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP019015.1|WP_000233576.1|4809713_4809920_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP019015.1|WP_000995418.1|4809995_4810292_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRCGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHHVDIDSEV
>NZ_CP019015.1|WP_000100847.1|4810297_4811083_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP019015.1|WP_000186848.1|4811079_4811760_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP019015.1|WP_000149537.1|4811756_4811939_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFHGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLS
>NZ_CP019015.1|WP_000548516.1|4811911_4812103_+|DUF1382-family-protein
MHKASPVELRTSIDLAHSLAQIGVRFVPIPAETDEEFHTLATSLSQKLEMMVAKAEADERDQV
>NZ_CP019015.1|WP_021533932.1|4812113_4812395_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSVTPQQENALRSIARQANSEIKKVRQQFPDKNVNDICRSVLKKHRETVTLKGFTPTHLSLAIGMLNGVFKER

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Crispr_ID: NZ_CP019015_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019015_4

4939342-4939433

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019015_4

>merge|NZ_CP019015|4|4939342-4939433|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP019015|4|3|4939342-4939433|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019015.1\|WP_001028098.1\|4937384_4937879_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP019015.1\|WP_001295943.1\|4937899_4939228_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP019015.1\|WP_000191701.1\|4932858_4933497_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP019015.1\|WP_001120112.1\|4948438_4949131_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP019015.1\|WP_000024569.1\|4943434_4943740_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP019015.1\|WP_000209903.1\|4943994_4944594_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP019015.1\|WP_000979522.1\|4928592_4928802_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019015.1\|WP_001264949.1\|4949103_4950132_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP019015.1\|WP_001151437.1\|4939856_4940453_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP019015.1\|WP_001295947.1\|4928856_4932819_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP019015.1\|WP_001230247.1\|4947136_4948309_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP019015.1\|WP_012896765.1\|4934875_4935568_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP019015.1\|WP_001295944.1\|4935973_4936774_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP019015.1\|WP_001063148.1\|4944590_4947137_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP019015.1\|WP_001295946.1\|4933784_4934876_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP019015.1\|WP_001044302.1\|4940738_4941980_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP019015.1\|WP_001143120.1\|4940473_4940701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP019015.1\|WP_000420625.1\|4942514_4943435_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP019015.1\|WP_001001161.1\|4936783_4937374_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP019015.1\|WP_001126780.1\|4935579_4935966_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677

Protein	Function_ID	Function_description	E-value
NZ_CP019015.1\|WP_001028098.1\|4937384_4937879_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP019015.1\|WP_001295943.1\|4937899_4939228_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP019015.1\|WP_000191701.1\|4932858_4933497_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP019015.1\|WP_001120112.1\|4948438_4949131_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP019015.1\|WP_000024569.1\|4943434_4943740_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP019015.1\|WP_000209903.1\|4943994_4944594_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP019015.1\|WP_001151437.1\|4939856_4940453_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP019015.1\|WP_001264949.1\|4949103_4950132_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP019015.1\|WP_000420625.1\|4942514_4943435_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP019015.1\|WP_001295947.1\|4928856_4932819_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP019015.1\|WP_001230247.1\|4947136_4948309_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP019015.1\|WP_012896765.1\|4934875_4935568_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP019015.1\|WP_001295944.1\|4935973_4936774_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP019015.1\|WP_001063148.1\|4944590_4947137_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP019015.1\|WP_001295946.1\|4933784_4934876_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP019015.1\|WP_001044302.1\|4940738_4941980_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP019015.1\|WP_001126780.1\|4935579_4935966_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP019015.1\|WP_001001161.1\|4936783_4937374_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP019015.1\|WP_001143120.1\|4940473_4940701_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44

>NZ_CP019015.1|WP_001295943.1|4937899_4939228_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP019015.1|WP_001028098.1|4937384_4937879_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP019015.1|WP_001001161.1|4936783_4937374_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP019015.1|WP_001295944.1|4935973_4936774_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP019015.1|WP_001126780.1|4935579_4935966_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP019015.1|WP_012896765.1|4934875_4935568_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP019015.1|WP_001295946.1|4933784_4934876_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP019015.1|WP_000191701.1|4932858_4933497_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP019015.1|WP_001295947.1|4928856_4932819_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP019015.1|WP_000979522.1|4928592_4928802_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP019015.1|WP_001151437.1|4939856_4940453_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP019015.1|WP_001143120.1|4940473_4940701_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP019015.1|WP_001044302.1|4940738_4941980_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP019015.1|WP_000420625.1|4942514_4943435_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP019015.1|WP_000024569.1|4943434_4943740_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP019015.1|WP_000209903.1|4943994_4944594_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP019015.1|WP_001063148.1|4944590_4947137_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP019015.1|WP_001230247.1|4947136_4948309_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP019015.1|WP_001120112.1|4948438_4949131_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP019015.1|WP_001264949.1|4949103_4950132_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019015_3	3.1\|4806958\|24\|NZ_CP019015\|PILER-CR	4806958-4806981	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP019015_3	3.1\|4806958\|24\|NZ_CP019015\|PILER-CR	4806958-4806981	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP019015_3	3.2\|4807005\|25\|NZ_CP019015\|PILER-CR	4807005-4807029	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP019015_3	3.2\|4807005\|25\|NZ_CP019015\|PILER-CR	4807005-4807029	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP019015_3	3.1\|4806958\|24\|NZ_CP019015\|PILER-CR	4806958-4806981	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP019015_3	3.2\|4807005\|25\|NZ_CP019015\|PILER-CR	4807005-4807029	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP019015_2	2.1\|4263627\|38\|NZ_CP019015\|CRISPRCasFinder	4263627-4263664	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP019015_4	4.1\|4939368\|40\|NZ_CP019015\|CRISPRCasFinder	4939368-4939407	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
NZ_CP019015_3	3.2\|4807005\|25\|NZ_CP019015\|PILER-CR	4807005-4807029	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84

1. spacer 3.1|4806958|24|NZ_CP019015|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 3.1|4806958|24|NZ_CP019015|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 3.2|4807005|25|NZ_CP019015|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 3.2|4807005|25|NZ_CP019015|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 3.1|4806958|24|NZ_CP019015|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

6. spacer 3.2|4807005|25|NZ_CP019015|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

7. spacer 2.1|4263627|38|NZ_CP019015|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

8. spacer 4.1|4939368|40|NZ_CP019015|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

9. spacer 3.2|4807005|25|NZ_CP019015|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 39722

Enterobacteria_phage(68.57%)

tRNA,terminase,tail,plate,capsid,head,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001055083.1\|0_1053_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_000632309.1\|1098_1899_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_078234351.1\|2000_2495_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-86	96.3
WP_000864901.1\|2494_2695_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_001342221.1\|2697_3021_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000072341.1\|3017_3410_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_000780577.1\|3406_3802_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000202148.1\|3940_5818_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000921127.1\|5841_6309_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000356366.1\|6301_6937_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_001271941.1\|6933_7515_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.3e-102	98.4
WP_000213444.1\|7511_7862_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
WP_001111954.1\|7865_8762_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_000071703.1\|8754_9285_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_032140708.1\|9287_11510_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.8e-183	65.0
WP_001554335.1\|11511_12039_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_000972134.1\|12067_12601_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	4.2e-96	98.9
WP_032142265.1\|12603_13161_-	hypothetical protein	A0A0A7NPY7	Enterobacteria_phage	5.0e-84	88.5
WP_000905061.1\|13379_13979_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|14007_14496_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853410.1\|14508_17316_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000333503.1\|17302_17458_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651577.1\|17466_17841_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000290462.1\|17896_18409_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005447.1\|18408_19593_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000132830.1\|19750_20860_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000488106.1\|20900_21161_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|21352_21493_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000886683.1\|21798_23091_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067797.1\|23181_24525_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|24535_25147_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|25305_29412_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|29546_30041_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_001385255.1\|30584_31550_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
WP_001043561.1\|31672_33439_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202204.1\|33439_35161_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	30.8
WP_001241674.1\|35202_35907_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|36191_36410_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|37094_39371_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|39401_39722_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

DBSCAN-SWA_2

2734145 : 2778959

Stx2-converting_phage(27.27%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000997995.1\|2734145_2735684_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|2736811_2737162_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|2737158_2737584_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|2737955_2738093_-	hypothetical protein	NA	NA	NA	NA
WP_001149834.1\|2738244_2739162_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|2739195_2740071_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|2740119_2741592_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|2741595_2742426_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|2742471_2743182_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|2743194_2744304_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001030790.1\|2744365_2745289_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|2745324_2746059_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|2746158_2747145_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|2747296_2748524_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|2749024_2751115_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001305021.1\|2751946_2752219_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|2752509_2752869_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|2752872_2753088_+	hypothetical protein	NA	NA	NA	NA
WP_032212789.1\|2756965_2757820_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-68	45.4
WP_001254932.1\|2757868_2759020_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001034083.1\|2759616_2763504_-\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_078234355.1\|2764447_2766649_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750130.1\|2766730_2768008_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015715.1\|2768004_2769747_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287500.1\|2769746_2770694_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001296374.1\|2770694_2772419_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074472.1\|2772554_2773748_+	MFS transporter	NA	NA	NA	NA
WP_001296373.1\|2774465_2774894_-	DUF417 family protein	NA	NA	NA	NA
WP_000109147.1\|2774933_2775494_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001110186.1\|2775535_2775796_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001513409.1\|2777629_2777743_+	hypothetical protein	NA	NA	NA	NA
WP_099156432.1\|2777833_2778959_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.5e-146	96.6

DBSCAN-SWA_3

3069117 : 3076257

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645096.1\|3069117_3069756_-	aldolase	A0A077SK32	Escherichia_phage	2.4e-82	74.5
WP_000590411.1\|3069752_3071015_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|3071011_3071920_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001272542.1\|3072085_3072883_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.0
WP_001141293.1\|3072933_3073590_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|3073695_3076257_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_4

3272175 : 3317043

Escherichia_phage(58.0%)

integrase,terminase,holin

attL 3275274:3275290|attR 3315200:3315216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296289.1\|3272175_3273642_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9
WP_000138282.1\|3273710_3275288_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
3275274:3275290	attL	NA	NA	NA	NA
WP_000954554.1\|3275480_3276731_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	8.8e-238	98.8
WP_001077943.1\|3276734_3276929_-	DUF1382 family protein	G9L698	Escherichia_phage	2.8e-26	96.9
WP_000163459.1\|3276925_3277576_-	adenine methylase	G9L699	Escherichia_phage	2.5e-127	99.1
WP_000675390.1\|3277976_3278225_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_000063820.1\|3278274_3279156_-	recombinase RecT	G9L6A2	Escherichia_phage	5.7e-159	98.6
WP_022645091.1\|3279152_3279974_-	hypothetical protein	G9L6A3	Escherichia_phage	4.0e-162	98.2
WP_001102251.1\|3279970_3280270_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.9e-46	97.0
WP_000836290.1\|3280578_3281163_-	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001282459.1\|3281317_3281548_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_022645090.1\|3281889_3282720_+	hypothetical protein	G9L6A8	Escherichia_phage	8.9e-154	96.7
WP_000843279.1\|3282691_3283468_+	hypothetical protein	G9L6A9	Escherichia_phage	4.6e-152	100.0
WP_001231262.1\|3283585_3283930_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.3e-61	99.1
WP_022645089.1\|3283991_3284639_+	hypothetical protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	2.6e-60	67.0
WP_022645088.1\|3284635_3284869_+	hypothetical protein	E9NIE8	Enterobacter_phage	3.0e-06	41.0
WP_022645087.1\|3284865_3285522_+	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	9.7e-79	72.8
WP_000582229.1\|3285523_3286279_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	5.5e-142	92.4
WP_022645086.1\|3286289_3287105_+	DUF551 domain-containing protein	A0A0N7C063	Escherichia_phage	3.1e-50	72.8
WP_000253289.1\|3287104_3287389_+	DUF4752 family protein	A5VWB4	Enterobacteria_phage	3.8e-48	100.0
WP_021573221.1\|3287381_3287663_+	ASCH domain-containing protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	4.5e-49	97.8
WP_021515113.1\|3287655_3287994_+	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	2.2e-58	99.1
WP_024181939.1\|3288034_3288709_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	1.3e-118	99.1
WP_000132533.1\|3288705_3290181_+\|terminase	terminase	G9L6B8	Escherichia_phage	1.2e-297	99.8
WP_000999689.1\|3290271_3290628_-	hypothetical protein	Q716B1	Shigella_phage	2.7e-43	75.4
WP_000335900.1\|3291330_3291537_+	hypothetical protein	G9L6C1	Escherichia_phage	1.0e-10	80.9
WP_021515109.1\|3291551_3293231_+	hypothetical protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	5.2e-302	98.7
WP_000133160.1\|3293227_3293524_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_001580872.1\|3293526_3294222_+	hypothetical protein	G9L6C4	Escherichia_phage	1.8e-94	99.1
WP_022645085.1\|3294236_3295223_+	hypothetical protein	G9L6C5	Escherichia_phage	1.2e-186	99.7
WP_000627074.1\|3295274_3295712_+	hypothetical protein	G9L6C6	Escherichia_phage	2.2e-74	100.0
WP_000012377.1\|3295722_3296058_+	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_000179259.1\|3296114_3296720_+	hypothetical protein	G9L6C9	Escherichia_phage	1.1e-111	99.5
WP_022645084.1\|3296719_3299191_+	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.3
WP_022645083.1\|3299190_3299655_+	hypothetical protein	A0A0F6R7N6	Escherichia_coli_O157_typing_phage	2.4e-84	99.4
WP_022644860.1\|3299654_3300200_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	2.9e-92	99.4
WP_001145657.1\|3300199_3302821_+	transglycosylase SLT domain-containing protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	9.9e-74	39.3
WP_022644859.1\|3302822_3304520_+	hypothetical protein	NA	NA	NA	NA
WP_022644858.1\|3304519_3307069_+	hypothetical protein	W6MWW8	Pseudomonas_phage	3.1e-205	45.5
WP_000643933.1\|3307071_3307632_+	hypothetical protein	NA	NA	NA	NA
WP_000708858.1\|3307668_3307830_-	hypothetical protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
WP_001555612.1\|3307922_3308468_-	hypothetical protein	G9L6E0	Escherichia_phage	5.2e-102	99.4
WP_001244090.1\|3308769_3309489_-	ORF6N domain-containing protein	G9L6E2	Escherichia_phage	4.2e-43	86.4
WP_001119419.1\|3309481_3309988_-	hypothetical protein	NA	NA	NA	NA
WP_001188252.1\|3310302_3310560_-	hypothetical protein	G9L6E3	Escherichia_phage	1.3e-42	100.0
WP_022645082.1\|3310756_3313219_+	hypothetical protein	O09496	Escherichia_virus	3.0e-173	50.7
WP_000009883.1\|3313291_3313696_+	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-62	95.5
WP_000256104.1\|3313682_3313991_+\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.6e-47	94.1
WP_022645081.1\|3313980_3314610_+	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	5.8e-113	97.1
WP_022645080.1\|3314606_3315089_+	DUF2514 domain-containing protein	A0A0F6TK39	Escherichia_coli_O157_typing_phage	1.5e-68	86.9
WP_000755178.1\|3315306_3315846_-	DUF5384 family protein	G9L6F0	Escherichia_phage	1.4e-43	98.9
3315200:3315216	attR	NA	NA	NA	NA
WP_001311989.1\|3315861_3316380_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
WP_000076001.1\|3316681_3316873_-	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
WP_000017548.1\|3316890_3317043_+	hypothetical protein	G9L6F3	Escherichia_phage	7.1e-17	90.0

DBSCAN-SWA_5

3692555 : 3700867

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|3692555_3693482_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8
WP_000783109.1\|3693486_3694218_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|3694198_3694306_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|3694365_3695097_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|3695318_3697004_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|3697000_3697720_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|3697766_3698237_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|3698277_3698739_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|3698863_3700867_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7

DBSCAN-SWA_6

3796176 : 3802479

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|3796176_3797571_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|3797745_3798639_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_022645070.1\|3799011_3800097_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-100	53.9
WP_001023641.1\|3800096_3800996_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|3801053_3801932_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|3801936_3802479_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_7

3825626 : 3861927

Stx2-converting_phage(21.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531805.1\|3825626_3826085_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.2e-11	31.5
WP_000980556.1\|3826195_3827623_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_001296209.1\|3827831_3828998_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.9e-228	99.5
WP_001105368.1\|3829116_3829590_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001200889.1\|3829787_3830846_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|3831017_3831347_+	DUF496 family protein	NA	NA	NA	NA
WP_000080195.1\|3831519_3833133_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|3833163_3833514_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|3833510_3833936_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_050482493.1\|3834017_3834170_-	ethanolamine utilization protein	NA	NA	NA	NA
WP_001161660.1\|3834658_3834772_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000988600.1\|3834784_3834979_-	hypothetical protein	NA	NA	NA	NA
WP_000854815.1\|3834975_3835350_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_001280918.1\|3835438_3835807_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086752.1\|3835822_3836467_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|3836485_3836707_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186775.1\|3836769_3837246_-	RadC family protein	NA	NA	NA	NA
WP_001350782.1\|3837261_3837735_-	antirestriction protein	A9J566	Pseudomonas_phage	8.7e-13	30.3
WP_022645069.1\|3838076_3838895_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.9e-45	38.6
WP_000846703.1\|3839115_3839526_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|3839974_3840721_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|3840735_3842277_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001542273.1\|3842391_3842805_-	hypothetical protein	NA	NA	NA	NA
WP_000102633.1\|3842940_3844011_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203551.1\|3844007_3844913_-	chemotaxis protein	NA	NA	NA	NA
WP_001531797.1\|3844909_3847294_-	hypothetical protein	NA	NA	NA	NA
WP_001069649.1\|3847511_3847946_-	hypothetical protein	NA	NA	NA	NA
WP_000856948.1\|3848374_3850540_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|3850550_3851540_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|3851558_3852617_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016207.1\|3852613_3853381_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-14	27.9
WP_001163787.1\|3853434_3853692_+	hypothetical protein	NA	NA	NA	NA
WP_001296206.1\|3854222_3855368_-	hypothetical protein	NA	NA	NA	NA
WP_089438313.1\|3856567_3856747_-\|transposase	transposase	NA	NA	NA	NA
WP_000255956.1\|3856892_3857915_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_000970353.1\|3857914_3858607_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-118	88.4
WP_001327829.1\|3858943_3859159_-	hypothetical protein	NA	NA	NA	NA
WP_000813432.1\|3859632_3860235_-	hypothetical protein	NA	NA	NA	NA
WP_001304240.1\|3860328_3860607_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001296203.1\|3860730_3861927_-\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3983878 : 4074016

104

Pectobacterium_phage(20.93%)

tRNA,transposase,portal,terminase,plate,tail,holin,integrase

attL 3979252:3979266|attR 3986004:3986018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3979252:3979266	attL	NA	NA	NA	NA
WP_001531780.1\|3983878_3984895_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|3984863_3985127_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|3985336_3985519_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|3985518_3986088_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
3986004:3986018	attR	NA	NA	NA	NA
WP_000151806.1\|3986084_3988301_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|3988331_3988652_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|3989662_3990076_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|3990174_3990405_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|3990463_3990940_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|3990979_3991204_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|3991200_3991956_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|3991945_3993361_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|3993399_3993810_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|3993811_3994048_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|3994044_3994356_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|3994352_3994577_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|3995258_3996047_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|3996221_3997145_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|3998332_3999031_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|3999493_4000099_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|4000108_4000597_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|4000995_4001229_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|4001472_4002114_+	hypothetical protein	NA	NA	NA	NA
WP_022645066.1\|4002338_4002857_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000343765.1\|4002875_4004096_+\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_001025459.1\|4004158_4004338_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|4004415_4005012_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|4005008_4005302_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|4005301_4005973_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|4006085_4006469_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|4006468_4006741_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|4006740_4007220_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|4007227_4007422_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|4007481_4007727_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|4008095_4008662_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|4008648_4010511_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|4010510_4010744_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|4010740_4012315_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|4012314_4013622_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|4013621_4013951_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_000105179.1\|4015078_4015498_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|4015494_4015875_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|4015906_4016587_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|4016583_4017120_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|4017100_4018003_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|4018005_4018347_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|4018343_4019264_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|4019266_4019893_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|4019885_4021070_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|4021069_4021459_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|4021455_4022958_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|4022975_4023488_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|4023500_4023782_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|4023890_4025531_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|4025566_4025956_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|4026117_4026342_+	hypothetical protein	NA	NA	NA	NA
WP_001296152.1\|4027556_4027976_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|4028447_4029113_+	UPF0149 family protein YecA	NA	NA	NA	NA
WP_000797555.1\|4029163_4030375_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|4030565_4030805_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|4030842_4031340_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|4031511_4031835_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|4032098_4032185_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|4032299_4032551_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|4032628_4033132_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|4033926_4034916_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_001187827.1\|4034985_4036500_+	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000987895.1\|4036511_4037501_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|4037667_4038468_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|4038442_4039867_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|4039873_4040302_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|4041081_4041432_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|4041434_4042013_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|4042139_4043027_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|4043023_4043950_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|4043954_4045919_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|4045939_4046443_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|4046587_4048249_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|4048539_4049400_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|4049402_4050452_+	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|4050466_4050856_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|4050866_4051511_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|4051699_4052848_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|4052840_4054919_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|4054918_4055311_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|4055363_4057097_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|4057312_4057879_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|4057892_4058639_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|4059026_4060127_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|4060151_4062581_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564759.1\|4062616_4063588_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|4063584_4064328_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|4064368_4064764_-	hypothetical protein	NA	NA	NA	NA
WP_000639277.1\|4064816_4065635_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|4065631_4066198_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|4066507_4068280_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|4068272_4068725_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|4068753_4069494_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|4069528_4070050_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|4070051_4070654_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|4070724_4070790_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|4070928_4071540_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|4071548_4072559_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_099156422.1\|4072668_4074016_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4

DBSCAN-SWA_9

4565207 : 4634922

Stx2-converting_phage(25.0%)

transposase,portal,tail,terminase,head,protease,capsid,holin,integrase

attL 4594093:4594107|attR 4635886:4635900

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422062.1\|4565207_4566257_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559273.1\|4566476_4567235_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278898.1\|4567231_4567822_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001000715.1\|4567878_4568187_-	hypothetical protein	NA	NA	NA	NA
WP_023141019.1\|4568196_4569183_-	hypothetical protein	NA	NA	NA	NA
WP_001291206.1\|4569388_4570264_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001296033.1\|4570476_4572372_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|4572399_4573020_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285702.1\|4573016_4573898_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|4574035_4574080_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194644.1\|4574171_4575734_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763535.1\|4575733_4577329_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001195273.1\|4577332_4578691_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000209513.1\|4578702_4579896_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443082.1\|4579895_4580702_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_001296031.1\|4581077_4581353_+	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|4581349_4581907_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000937495.1\|4582318_4582588_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|4582644_4583313_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|4583511_4583694_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_022645053.1\|4583921_4584707_+	hypothetical protein	Q858V4	Yersinia_virus	1.3e-109	77.8
WP_000972097.1\|4584708_4585242_+\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_001164137.1\|4585272_4585800_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_071550361.1\|4585815_4588722_-	hypothetical protein	A0A0F7LDR4	Escherichia_phage	1.1e-118	45.9
WP_001016257.1\|4589183_4589930_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|4589944_4591486_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000514710.1\|4592126_4595600_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
4594093:4594107	attL	NA	NA	NA	NA
WP_061089814.1\|4595942_4596575_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000194730.1\|4596520_4597264_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_001296027.1\|4597274_4597973_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|4597972_4598314_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|4598306_4601549_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|4601596_4601806_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|4601901_4602276_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|4602290_4603007_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|4603073_4603418_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|4603414_4603861_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|4603857_4604208_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|4604217_4604544_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|4604540_4607126_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|4607071_4607293_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|4607337_4609275_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001296023.1\|4609338_4611000_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958366.1\|4610996_4611560_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|4611850_4612216_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|4612257_4612458_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|4612656_4612872_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|4612957_4613143_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|4613364_4613451_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|4614005_4614539_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_000369850.1\|4614644_4614917_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|4614882_4615227_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|4615231_4615447_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|4615597_4617451_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|4617711_4618047_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|4618327_4618459_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|4619260_4620310_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|4620461_4620659_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|4620885_4621707_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_078234361.1\|4621703_4622084_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.2e-34	63.6
WP_001265085.1\|4622084_4623140_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|4623141_4623414_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|4623581_4623794_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|4623974_4624640_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|4624814_4625240_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|4625255_4626026_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|4626047_4626794_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|4626800_4627763_-	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|4627785_4628211_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|4628207_4628423_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|4628472_4629189_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|4629461_4629617_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|4629776_4629995_+	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|4630560_4630749_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|4630745_4630937_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|4631029_4633501_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
WP_000113189.1\|4633565_4633814_+	excisionase	NA	NA	NA	NA
WP_000113700.1\|4633791_4634922_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
4635886:4635900	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4772883 : 4818592

Enterobacteria_phage(56.0%)

tRNA,portal,tail,terminase,capsid,head,holin,integrase,lysis

attL 4791667:4791681|attR 4820261:4820275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|4772883_4773162_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|4773158_4775180_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|4775238_4778721_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|4778781_4779384_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|4779320_4780064_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|4780068_4780767_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|4780766_4781096_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|4781092_4783654_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|4783646_4784081_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|4784062_4784485_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|4784500_4785241_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|4785248_4785644_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|4785640_4786219_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|4786230_4786584_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|4786595_4786994_-	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|4787035_4788061_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|4788116_4788449_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|4788458_4789778_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|4789758_4791360_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|4791356_4791563_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|4791559_4793485_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
4791667:4791681	attL	NA	NA	NA	NA
WP_000453620.1\|4793459_4794005_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|4794568_4794751_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|4794957_4795284_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|4795764_4796058_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|4796148_4796331_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|4796547_4797024_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|4797010_4797316_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|4797637_4798327_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|4798323_4798464_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|4798460_4798823_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|4798819_4799110_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|4799102_4799273_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|4799272_4799728_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|4799724_4799826_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|4800175_4801219_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022645049.1\|4801255_4805521_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|4805770_4806472_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_001435464.1\|4806468_4807398_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182900.1\|4807484_4808024_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|4808093_4808324_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000259990.1\|4808362_4809118_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_000233576.1\|4809713_4809920_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|4809995_4810292_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|4810297_4811083_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|4811079_4811760_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|4811756_4811939_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|4811911_4812103_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|4812113_4812395_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|4812493_4812715_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|4812714_4813041_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|4813024_4813264_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|4813403_4813640_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|4813629_4814772_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|4814885_4816136_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|4816307_4816961_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|4816970_4817432_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|4817485_4818592_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
4820261:4820275	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5015700 : 5069420

Burkholderia_virus(42.86%)

tRNA,transposase,tail,plate,capsid,integrase

attL 5024985:5025000|attR 5044306:5044321

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295930.1\|5015700_5016486_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|5016621_5017401_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|5017377_5018271_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|5018424_5019171_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|5019167_5019350_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|5019401_5020634_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570547.1\|5020670_5021657_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|5021653_5023402_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|5023438_5025703_-	ComEC family protein	NA	NA	NA	NA
5024985:5025000	attL	NA	NA	NA	NA
WP_000167336.1\|5025908_5026193_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|5026352_5028026_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|5028136_5028820_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|5028992_5029775_-	metallopeptidase YcaL	NA	NA	NA	NA
WP_001281701.1\|5029918_5030308_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|5030279_5030729_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|5030730_5030937_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|5030926_5031157_-	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|5031153_5031837_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000763554.1\|5031833_5032049_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|5032063_5032360_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|5032369_5032642_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|5032930_5033461_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|5033488_5033758_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|5033760_5034927_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000186588.1\|5034937_5036707_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_001095645.1\|5036722_5037040_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|5037039_5037960_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|5037970_5038279_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|5038331_5038520_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|5038613_5038970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|5039086_5039851_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|5040041_5040257_-	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|5040255_5040660_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|5040635_5041364_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|5041494_5041845_+	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|5041847_5042588_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|5042571_5043222_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|5043218_5043545_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|5043544_5043856_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|5043855_5044401_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
5044306:5044321	attR	NA	NA	NA	NA
WP_001295924.1\|5044460_5045993_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.2e-185	62.8
WP_000090684.1\|5045992_5047489_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|5047469_5048291_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|5048293_5048752_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_001273074.1\|5048966_5050082_+	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_001286908.1\|5050096_5051050_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_022645047.1\|5051059_5051398_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|5051399_5051846_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|5051845_5052310_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_012602372.1\|5052306_5052561_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|5052550_5053978_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000034294.1\|5053977_5054499_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000110114.1\|5054501_5054783_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|5054880_5055216_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|5055139_5055298_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|5055373_5058325_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|5058324_5059209_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_012602373.1\|5059205_5059421_+	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|5059408_5060563_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|5060559_5061156_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|5061210_5061558_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|5061548_5062652_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|5062644_5063223_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_000527461.1\|5063225_5064557_+\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	4.8e-40	44.4
WP_000072165.1\|5064556_5065171_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_023142129.1\|5065177_5065639_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_064767240.1\|5065649_5066090_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_000904922.1\|5066149_5066722_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|5066977_5068261_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|5068331_5069420_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8

DBSCAN-SWA_12

5079818 : 5093451

Enterobacteria_phage(75.0%)

integrase

attL 5074195:5074208|attR 5088612:5088625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5074195:5074208	attL	NA	NA	NA	NA
WP_000213098.1\|5079818_5080436_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|5080446_5082891_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000023739.1\|5083190_5084183_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.3e-103	56.2
WP_001368591.1\|5084252_5084594_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_001204236.1\|5084698_5085220_+	transcriptional regulator	NA	NA	NA	NA
WP_000856387.1\|5085224_5085647_+	hypothetical protein	NA	NA	NA	NA
WP_001287828.1\|5085653_5085845_-	hypothetical protein	NA	NA	NA	NA
WP_000776267.1\|5085982_5086333_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_000159455.1\|5086343_5086622_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000514277.1\|5086633_5086876_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021715.1\|5086872_5086986_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000543036.1\|5087079_5087490_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|5087513_5087717_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|5087713_5087980_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000104290.1\|5087976_5088276_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_023142408.1\|5088287_5088905_+	hypothetical protein	S5MQL6	Escherichia_phage	1.5e-09	42.0
5088612:5088625	attR	NA	NA	NA	NA
WP_022645046.1\|5088901_5089267_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.5e-60	96.7
WP_000123489.1\|5089273_5092096_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.4
WP_000686485.1\|5092172_5093132_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000211282.1\|5093136_5093451_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP019014

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2031 : 56539

Escherichia_phage(36.84%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|2031_2736_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004196359.1\|3153_3525_-	hypothetical protein	NA	NA	NA	NA
WP_004152397.1\|4436_5756_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004152396.1\|6005_6887_-	carbapenem-hydrolyzing class A beta-lactamase KPC-3	A0A1B0VBP7	Salmonella_phage	2.8e-73	52.2
WP_004152394.1\|7205_7985_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|7981_9007_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|9113_12143_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|12252_13968_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001067855.1\|14454_15159_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_127524347.1\|15211_17920_+	AAA family ATPase	NA	NA	NA	NA
WP_000205725.1\|17939_18686_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.4e-09	30.8
WP_000704528.1\|18744_19605_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	6.7e-11	23.8
WP_000139321.1\|19707_20268_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001309245.1\|20396_20609_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001233838.1\|20853_21315_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1
WP_001298565.1\|21360_21570_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000766805.1\|21607_22198_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000083819.1\|22437_22698_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|22922_22997_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130647.1\|22989_23847_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|24785_25439_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|25531_25789_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|25721_26123_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|26259_29157_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_000509965.1\|29251_29857_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
WP_001351729.1\|30633_31026_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|31163_32048_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|32079_33279_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|33384_34035_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_032140899.1\|34066_34309_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|35930_36635_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000130000.1\|36824_37130_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|37140_38346_-	chromate efflux transporter	NA	NA	NA	NA
WP_000427619.1\|38573_39578_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004883563.1\|39759_40032_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|40159_40999_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|40992_41340_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|41545_42334_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|42464_42938_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|43095_44109_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|44311_44662_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001553864.1\|44787_45117_+	recombinase family protein	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_001067855.1\|45007_45712_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012372823.1\|45937_46753_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_000118029.1\|47099_48986_+	FTR1 family iron permease	NA	NA	NA	NA
WP_000178050.1\|49026_49554_+	iron transporter	NA	NA	NA	NA
WP_000119836.1\|49657_51037_+	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000964653.1\|51039_52323_+	ABC transporter permease	NA	NA	NA	NA
WP_000729220.1\|52312_53443_+	ABC transporter permease	NA	NA	NA	NA
WP_000117262.1\|53447_54143_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_001267177.1\|54129_54615_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000874189.1\|54639_55125_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|55834_56539_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

87623 : 138771

Macacine_betaherpesvirus(31.25%)

integrase,transposase

attL 80860:80873|attR 111188:111201

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
80860:80873	attL	NA	NA	NA	NA
WP_000016982.1\|87623_88430_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_000852146.1\|89203_89959_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000772446.1\|90546_91713_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000817036.1\|91712_92684_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_001348615.1\|93550_94453_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000086185.1\|94837_95521_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001104873.1\|95521_95743_+	hypothetical protein	NA	NA	NA	NA
WP_000274437.1\|95756_96191_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001671341.1\|97557_97860_+	antirestriction protein	NA	NA	NA	NA
WP_000271753.1\|97906_98329_+	DUF1380 family protein	NA	NA	NA	NA
WP_001027516.1\|98325_98517_+	hypothetical protein	NA	NA	NA	NA
WP_000218642.1\|99551_99782_+	hypothetical protein	NA	NA	NA	NA
WP_000170728.1\|99833_101195_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_012783964.1\|101241_101805_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	4.7e-21	37.3
WP_032140903.1\|102249_102441_+	hypothetical protein	NA	NA	NA	NA
WP_000290793.1\|102668_103196_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.7e-46	54.3
WP_000006004.1\|103251_103485_+	DUF905 domain-containing protein	A0A096XUX0	Cronobacter_phage	3.9e-06	51.1
WP_001145469.1\|103543_105502_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	4.7e-20	29.2
WP_000845901.1\|105556_105991_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276234.1\|105987_106707_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001299721.1\|106718_106907_-	hypothetical protein	NA	NA	NA	NA
WP_001312861.1\|106986_107145_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_032140903.1\|107645_107837_+	hypothetical protein	NA	NA	NA	NA
WP_000107537.1\|108063_108351_+	hypothetical protein	NA	NA	NA	NA
WP_001234469.1\|108471_109293_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	4.4e-44	38.2
WP_000614282.1\|109589_110237_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_001151564.1\|110522_110906_+	relaxosome protein TraM	NA	NA	NA	NA
WP_000332487.1\|111099_111786_+	PAS domain-containing protein	NA	NA	NA	NA
111188:111201	attR	NA	NA	NA	NA
WP_001254388.1\|111879_112107_+	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA
WP_001098998.1\|112140_112503_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_000012106.1\|112507_112819_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_000399804.1\|112840_113407_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_072095570.1\|113417_114122_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_000146638.1\|114121_115549_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_000002795.1\|115538_116123_+	conjugal transfer protein TraP	NA	NA	NA	NA
WP_071528018.1\|116076_116430_+	conjugal transfer protein TrbD	NA	NA	NA	NA
WP_001038341.1\|116422_116674_+	conjugal transfer protein TrbG	NA	NA	NA	NA
WP_000809893.1\|116670_117186_+	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_001278978.1\|117320_117542_+	conjugal transfer protein TraR	A0A218M4I6	Erwinia_phage	7.4e-07	41.7
WP_001064239.1\|117701_120329_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_000214082.1\|120325_120712_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
WP_001203720.1\|120708_121341_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_000830838.1\|121337_122330_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_000224411.1\|122359_122665_+	hypothetical protein	NA	NA	NA	NA
WP_001080257.1\|122673_123312_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_001067855.1\|123489_124194_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_050482503.1\|124184_124883_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_004196325.1\|124936_125695_+	hypothetical protein	NA	NA	NA	NA
WP_004196314.1\|125928_127227_+	MFS transporter	NA	NA	NA	NA
WP_004196355.1\|127332_127602_+	nickel-sensing transcriptional repressor NcrB	NA	NA	NA	NA
WP_004196366.1\|127614_128745_+	Ni(II)/Co(II) efflux transporter permease subunit NcrC	NA	NA	NA	NA
WP_032072095.1\|128906_129329_+	nickel resistance OB fold protein NcrY	NA	NA	NA	NA
WP_004196353.1\|129584_130925_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_015065592.1\|131013_132546_+\|transposase	IS3-like element ISKpn38 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
WP_077253291.1\|132979_135103_-	S8 family peptidase	NA	NA	NA	NA
WP_022644891.1\|135467_136508_-	ATP-binding protein	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
WP_113705801.1\|136677_138008_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-79	74.1
WP_001067855.1\|138066_138771_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019013

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP019014

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection