CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP019010	Escherichia coli strain Ecol_AZ161 plasmid pECAZ161_KPC, complete sequence	0 crisprs	NA	0	1
NZ_CP019009	Escherichia coli strain Ecol_AZ161 plasmid pECAZ161_3, complete sequence	0 crisprs	NA	0	2
NZ_CP019012	Escherichia coli strain Ecol_AZ161 chromosome, complete genome	4 crisprs	DEDDh,cas3,c2c9_V-U4,csa3,DinG	4	11
NZ_CP019011	Escherichia coli strain Ecol_AZ161 plasmid pECAZ161_1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28111 : 37273

Enterobacteria_phage(50.0%)

integrase,transposase

attL 26495:26523|attR 30467:30495

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
26495:26523	attL	NA	NA	NA	NA
WP_002353195.1\|28111_28303_+	ribbon-helix-helix domain-containing protein	A0A0A7RUX5	Clostridium_phage	7.8e-05	55.6
WP_002353184.1\|28553_28943_-	hypothetical protein	NA	NA	NA	NA
WP_002353199.1\|29558_30326_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-14	42.7
WP_032442017.1\|30562_31006_+	antirestriction protein	NA	NA	NA	NA
30467:30495	attR	NA	NA	NA	NA
WP_002353182.1\|31168_31816_+	ParA family protein	J9Q7R7	Salmonella_phage	4.1e-05	28.3
WP_002353177.1\|31906_32158_+	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|32505_33366_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001217881.1\|33548_34106_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_001143775.1\|34267_37273_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019009

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5352 : 46940

Escherichia_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067858.1\|5352_6057_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_014342212.1\|7383_7533_+	hypothetical protein	NA	NA	NA	NA
WP_000080860.1\|7499_8636_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000248278.1\|8686_8914_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|8937_9129_+	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|10067_10772_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000557454.1\|12655_13516_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067858.1\|13684_14389_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000027057.1\|14687_15548_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001262765.1\|15824_17135_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_001398199.1\|17419_17821_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|17753_18011_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|18103_18757_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001617855.1\|19696_20554_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_031943482.1\|20546_20621_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083850.1\|20857_21112_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_023144756.1\|21408_21543_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000080195.1\|21978_23592_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|23622_23973_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|23969_24395_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_013023861.1\|24953_25166_-	hypothetical protein	NA	NA	NA	NA
WP_000422741.1\|25256_25682_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|25678_26029_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080195.1\|26059_27673_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000139341.1\|27836_28397_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000205718.1\|28451_29198_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.2e-09	30.9
WP_001617867.1\|29217_34488_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_047605472.1\|34487_36713_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_000199914.1\|36709_37489_-	hypothetical protein	NA	NA	NA	NA
WP_000850429.1\|37691_38423_-	complement resistance protein TraT	NA	NA	NA	NA
WP_000605862.1\|38454_38952_-	entry exclusion protein	NA	NA	NA	NA
WP_001007062.1\|38970_41790_-	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_000944328.1\|41786_43160_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_001348758.1\|43146_43572_-	F-type conjugal transfer protein TrbF	NA	NA	NA	NA
WP_071571857.1\|43519_43867_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_000059829.1\|43796_44342_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_001617873.1\|44328_44613_-	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_001348757.1\|44739_45060_-	conjugal transfer protein TrbA	NA	NA	NA	NA
WP_000019450.1\|45959_46940_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1

DBSCAN-SWA_2

66054 : 122443

Escherichia_phage(33.33%)

integrase,transposase

attL 105058:105072|attR 112056:112070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085947770.1\|66054_67424_-\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.3e-112	100.0
WP_001276232.1\|67669_68389_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845940.1\|68385_68820_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_000117179.1\|68874_70833_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.3e-22	27.4
WP_000005990.1\|70898_71132_-	DUF905 family protein	NA	NA	NA	NA
WP_000290841.1\|71194_71734_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.2e-45	73.9
WP_032143370.1\|71967_72156_-	hypothetical protein	NA	NA	NA	NA
WP_032153960.1\|72376_72613_-	hypothetical protein	NA	NA	NA	NA
WP_001348621.1\|72638_73202_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.0e-20	37.3
WP_000170714.1\|73249_74611_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_000218642.1\|74662_74893_-	hypothetical protein	NA	NA	NA	NA
WP_001027516.1\|75927_76119_-	hypothetical protein	NA	NA	NA	NA
WP_000271753.1\|76115_76538_-	DUF1380 family protein	NA	NA	NA	NA
WP_001671341.1\|76584_76887_-	antirestriction protein	NA	NA	NA	NA
WP_000274437.1\|78253_78688_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104873.1\|78701_78923_-	hypothetical protein	NA	NA	NA	NA
WP_000086185.1\|78923_79607_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001348615.1\|79991_80894_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000817036.1\|81760_82732_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|82731_83898_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000852146.1\|84485_85241_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000016982.1\|86014_86821_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159868.1\|86821_87127_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|87128_87347_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000246636.1\|88054_89050_+	hypothetical protein	NA	NA	NA	NA
WP_000991832.1\|89053_89986_+	hypothetical protein	NA	NA	NA	NA
WP_001617890.1\|93274_94558_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	2.2e-10	26.5
WP_001617892.1\|94554_96111_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
WP_001190712.1\|96293_96515_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216034.1\|96514_96895_+	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001513661.1\|96899_97079_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001513660.1\|97106_97466_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513659.1\|97752_98070_-	hypothetical protein	NA	NA	NA	NA
WP_012372828.1\|98297_99314_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4
WP_001373486.1\|99521_100925_+	S-methylmethionine permease	NA	NA	NA	NA
WP_000081352.1\|100911_101844_+	homocysteine S-methyltransferase	NA	NA	NA	NA
105058:105072	attL	NA	NA	NA	NA
WP_000361610.1\|105186_106164_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.4e-100	59.2
WP_001066941.1\|106448_107189_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
WP_001309252.1\|107309_107498_-	hypothetical protein	NA	NA	NA	NA
WP_001072358.1\|107864_109034_+	hypothetical protein	NA	NA	NA	NA
WP_001322642.1\|109880_110153_-	transcriptional regulator	NA	NA	NA	NA
WP_001298664.1\|111395_113366_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
112056:112070	attR	NA	NA	NA	NA
WP_000977394.1\|113372_114164_+	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_001323403.1\|114902_115682_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_001310017.1\|115681_116704_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7
WP_032336940.1\|117783_117942_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	1.2e-22	98.1
WP_001067858.1\|117994_118699_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001389366.1\|119664_120138_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|120268_121057_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|121262_121610_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|121603_122443_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP019012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019012_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019012_1

231549-231662

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019012_1

>merge|NZ_CP019012|1|231549-231662|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP019012|1|1|231549-231662|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019012.1\|WP_001099488.1\|223074_223437_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_CP019012.1\|WP_021533932.1\|236727_237009_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP019012.1\|WP_000186848.1\|235693_236374_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP019012.1\|WP_000259990.1\|232976_233732_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP019012.1\|WP_072147164.1\|224338_224440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019012.1\|WP_001097224.1\|222251_222941_-\|antiterminator-Q	unknown	unknown	gnl\|CDD\|368843
NZ_CP019012.1\|WP_000224914.1\|223716_223887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP019012.1\|WP_000971096.1\|222937_223078_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP019012.1\|WP_000149537.1\|236370_236553_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP019012.1\|WP_001067458.1\|232707_232938_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP019012.1\|WP_022645049.1\|225869_230135_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP019012.1\|WP_001182900.1\|232098_232638_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP019012.1\|WP_000700202.1\|224789_225833_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP019012.1\|WP_000100847.1\|234911_235697_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP019012.1\|WP_000548516.1\|236525_236717_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP019012.1\|WP_000995418.1\|234609_234906_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP019012.1\|WP_001053005.1\|223886_224342_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP019012.1\|WP_000788794.1\|230384_231086_-\|replication-protein-P-of-bacteriophage	unknown	unknown	gnl\|CDD\|369163
NZ_CP019012.1\|WP_000233576.1\|234327_234534_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP019012.1\|WP_000774479.1\|223433_223724_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777

Protein	Function_ID	Function_description	E-value
NZ_CP019012.1\|WP_001099488.1\|223074_223437_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	5.2666e-72
NZ_CP019012.1\|WP_000186848.1\|235693_236374_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	3.63434e-29
NZ_CP019012.1\|WP_000259990.1\|232976_233732_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.29853e-28
NZ_CP019012.1\|WP_001097224.1\|222251_222941_-\|antiterminator-Q	gnl\|CDD\|368843	pfam06323, Phage_antiter_Q, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 82 gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator.	4.35962e-97
NZ_CP019012.1\|WP_000224914.1\|223716_223887_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP019012.1\|WP_001067458.1\|232707_232938_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP019012.1\|WP_000149537.1\|236370_236553_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	6.23812e-34
NZ_CP019012.1\|WP_022645049.1\|225869_230135_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.77506e-127
NZ_CP019012.1\|WP_000774479.1\|223433_223724_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	8.41611e-49
NZ_CP019012.1\|WP_000700202.1\|224789_225833_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.88698e-30
NZ_CP019012.1\|WP_000100847.1\|234911_235697_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP019012.1\|WP_000548516.1\|236525_236717_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	1.05312e-21
NZ_CP019012.1\|WP_000995418.1\|234609_234906_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	4.88161e-52
NZ_CP019012.1\|WP_001053005.1\|223886_224342_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.40549e-94
NZ_CP019012.1\|WP_000788794.1\|230384_231086_-\|replication-protein-P-of-bacteriophage	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.10349e-80
NZ_CP019012.1\|WP_000233576.1\|234327_234534_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP019012.1\|WP_001182900.1\|232098_232638_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	4.83697e-38

>NZ_CP019012.1|WP_000788794.1|230384_231086_-|replication-protein-P-of-bacteriophage
MKNIAAQMINFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVSDGMRVARRQNRPFLPSPGQFVAWCREEASVTAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELACMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGAMK
>NZ_CP019012.1|WP_022645049.1|225869_230135_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MTTVNKKLKKTASGAITWSVIVTQILSPVSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLPESVQGEGESIIPVTLTINNASGGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYKSEGVNSWNVGATVQDNRGNVSNYAVMNISVTDSGVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLTAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLSIKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDSQGNAITGDNTLSFYALNQAEGVEFGTVTEKDGVYSATVTSKRAGKITIGVKSDSHDFSGVKKEITFIEDRQQVTFSQFEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGSQMSTELTVTFASNMTGASLSLTPESSSLISNIPANGKDAAVLDVQLTNTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDVASAELNMSVSKQEIVADGSENATVNIQLVDANNNAFTGEVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQAEYVLDGKRITASQNIDAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSGRALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVEFSAGSEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAKITNSKNTYEKTIRTYVVKLPEKDS
>NZ_CP019012.1|WP_000700202.1|224789_225833_+|alpha/beta-hydrolase
MKINKILSSATLLYGMSMAMSVGSCATPVQTNLPGYTPGADIISVSPTRNQVDLIGDVVYSQIKGTRSVRQLHMSVLVPRTNDLKPAIIYYPGGGFMSSEHDKFIEMRMALAEAGFVVAAVEYRTIPDTFPAPVEDGKAAIRYLREHASNYGIDPQRIGVLGDSAGGWLAQMMGTTNGDKTFDKGDFLQQSSDVQAVATLYGISDLLNIGEGFPESVQEVHRSPAVTEALMINGPAFRNFAGAPITASKEKALNASPIGHMKGVKPPFLIMHGSKDTLVSPEQSAKLFRMLKKNGDNAEYVLVEGAEHGDKTWYQPIIINRVVEWFTKNLGAPIKTAPQQQNPNANL
>NZ_CP019012.1|WP_072147164.1|224338_224440_-|hypothetical-protein
MRTHNPNSLLPSQMQKCTCVFLHLASDLCGGEA
>NZ_CP019012.1|WP_001053005.1|223886_224342_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFIAIGQQIQPYLENGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP019012.1|WP_000224914.1|223716_223887_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP019012.1|WP_000774479.1|223433_223724_-|DUF1364-domain-containing-protein
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLAGLCGTGIKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
>NZ_CP019012.1|WP_001099488.1|223074_223437_-|RusA-family-crossover-junction-endodeoxyribonuclease
MNTYCITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKNAMLDIGLAIPVKISIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITELGDE
>NZ_CP019012.1|WP_000971096.1|222937_223078_-|YlcG-family-protein
MMFESYMAERLRRRWVRLRLYRFPSSVLTDYRILKNYAKTLKGAAA
>NZ_CP019012.1|WP_001097224.1|222251_222941_-|antiterminator-Q
MNTQYLQYVREQLIVATADLSGATKGQLEAWLEHAQFDTGTYKRKKPRILDEVTGRMITLDNPPISGKQLYAKGSSIALVSQVEFSTSSWRRAVLSLEEHQKAWLLWSYSESVRWEHQVTITQWAWSEFKTLLGTRKIAGKTLERLKKLIWLAAQDVKNELAGRKTYEYQELASLVGVTSKNWSETFTERWVAMKHIFLQLDSQALLLLTKTRSKQKTIFSQQDIAKLD
>NZ_CP019012.1|WP_001182900.1|232098_232638_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYLEQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP019012.1|WP_001067458.1|232707_232938_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP019012.1|WP_000259990.1|232976_233732_+|helix-turn-helix-transcriptional-regulator
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP019012.1|WP_000233576.1|234327_234534_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP019012.1|WP_000995418.1|234609_234906_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRCGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHHVDIDSEV
>NZ_CP019012.1|WP_000100847.1|234911_235697_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP019012.1|WP_000186848.1|235693_236374_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP019012.1|WP_000149537.1|236370_236553_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFHGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLS
>NZ_CP019012.1|WP_000548516.1|236525_236717_+|DUF1382-family-protein
MHKASPVELRTSIDLAHSLAQIGVRFVPIPAETDEEFHTLATSLSQKLEMMVAKAEADERDQV
>NZ_CP019012.1|WP_021533932.1|236727_237009_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSVTPQQENALRSIARQANSEIKKVRQQFPDKNVNDICRSVLKKHRETVTLKGFTPTHLSLAIGMLNGVFKER

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Crispr_ID: NZ_CP019012_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019012_2

363957-364048

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019012_2

>merge|NZ_CP019012|2|363957-364048|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP019012|2|1|363957-364048|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019012.1\|WP_000979522.1\|353207_353417_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019012.1\|WP_001120112.1\|373053_373746_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP019012.1\|WP_001295947.1\|353471_357434_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP019012.1\|WP_001126780.1\|360194_360581_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP019012.1\|WP_001264949.1\|373718_374747_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP019012.1\|WP_001143120.1\|365088_365316_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP019012.1\|WP_000209903.1\|368609_369209_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP019012.1\|WP_001001161.1\|361398_361989_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP019012.1\|WP_001295943.1\|362514_363843_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP019012.1\|WP_001028098.1\|361999_362494_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP019012.1\|WP_012896765.1\|359490_360183_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP019012.1\|WP_000191701.1\|357473_358112_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP019012.1\|WP_000420625.1\|367129_368050_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP019012.1\|WP_001295946.1\|358399_359491_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP019012.1\|WP_001151437.1\|364471_365068_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP019012.1\|WP_001063148.1\|369205_371752_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP019012.1\|WP_001230247.1\|371751_372924_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP019012.1\|WP_001044302.1\|365353_366595_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP019012.1\|WP_001295944.1\|360588_361389_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP019012.1\|WP_000024569.1\|368049_368355_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346

Protein	Function_ID	Function_description	E-value
NZ_CP019012.1\|WP_001120112.1\|373053_373746_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP019012.1\|WP_001295947.1\|353471_357434_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP019012.1\|WP_001126780.1\|360194_360581_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP019012.1\|WP_001264949.1\|373718_374747_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP019012.1\|WP_001143120.1\|365088_365316_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP019012.1\|WP_000209903.1\|368609_369209_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP019012.1\|WP_001001161.1\|361398_361989_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP019012.1\|WP_001295943.1\|362514_363843_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP019012.1\|WP_001028098.1\|361999_362494_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP019012.1\|WP_012896765.1\|359490_360183_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP019012.1\|WP_000191701.1\|357473_358112_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP019012.1\|WP_000420625.1\|367129_368050_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP019012.1\|WP_001295946.1\|358399_359491_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP019012.1\|WP_001151437.1\|364471_365068_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP019012.1\|WP_001063148.1\|369205_371752_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP019012.1\|WP_001230247.1\|371751_372924_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP019012.1\|WP_001044302.1\|365353_366595_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP019012.1\|WP_001295944.1\|360588_361389_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP019012.1\|WP_000024569.1\|368049_368355_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65

>NZ_CP019012.1|WP_001295943.1|362514_363843_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP019012.1|WP_001028098.1|361999_362494_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP019012.1|WP_001001161.1|361398_361989_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP019012.1|WP_001295944.1|360588_361389_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP019012.1|WP_001126780.1|360194_360581_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP019012.1|WP_012896765.1|359490_360183_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP019012.1|WP_001295946.1|358399_359491_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP019012.1|WP_000191701.1|357473_358112_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP019012.1|WP_001295947.1|353471_357434_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP019012.1|WP_000979522.1|353207_353417_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP019012.1|WP_001151437.1|364471_365068_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP019012.1|WP_001143120.1|365088_365316_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP019012.1|WP_001044302.1|365353_366595_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP019012.1|WP_000420625.1|367129_368050_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP019012.1|WP_000024569.1|368049_368355_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP019012.1|WP_000209903.1|368609_369209_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP019012.1|WP_001063148.1|369205_371752_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP019012.1|WP_001230247.1|371751_372924_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP019012.1|WP_001120112.1|373053_373746_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP019012.1|WP_001264949.1|373718_374747_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP019012_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019012_3

533938-534020

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019012_3

>merge|NZ_CP019012|3|533938-534020|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP019012|3|2|533938-534020|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019012.1\|WP_001241674.1\|532340_533045_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP019012.1\|WP_000520781.1\|536538_536859_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP019012.1\|WP_000458841.1\|545876_547529_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP019012.1\|WP_000188152.1\|537478_539425_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP019012.1\|WP_001202204.1\|530577_532299_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP019012.1\|WP_001351020.1\|540687_541644_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP019012.1\|WP_000228473.1\|526684_527179_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP019012.1\|WP_000077041.1\|522443_526550_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP019012.1\|WP_000599803.1\|541640_543299_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP019012.1\|WP_001043561.1\|528810_530577_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP019012.1\|WP_000067797.1\|520319_521663_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP019012.1\|WP_000491137.1\|544833_545733_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP019012.1\|WP_000746478.1\|539421_540537_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP019012.1\|WP_000934041.1\|534231_536508_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP019012.1\|WP_000488716.1\|543723_544419_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP019012.1\|WP_001295343.1\|521673_522285_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP019012.1\|WP_000886683.1\|518936_520229_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP019012.1\|WP_001040187.1\|533329_533548_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP019012.1\|WP_001385255.1\|527722_528688_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP019012.1\|WP_000410785.1\|537181_537406_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494

Protein	Function_ID	Function_description	E-value
NZ_CP019012.1\|WP_001241674.1\|532340_533045_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP019012.1\|WP_000520781.1\|536538_536859_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP019012.1\|WP_000458841.1\|545876_547529_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP019012.1\|WP_000188152.1\|537478_539425_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP019012.1\|WP_001202204.1\|530577_532299_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019012.1\|WP_001351020.1\|540687_541644_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP019012.1\|WP_000228473.1\|526684_527179_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP019012.1\|WP_000077041.1\|522443_526550_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP019012.1\|WP_000599803.1\|541640_543299_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP019012.1\|WP_001043561.1\|528810_530577_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP019012.1\|WP_000067797.1\|520319_521663_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP019012.1\|WP_000491137.1\|544833_545733_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP019012.1\|WP_000746478.1\|539421_540537_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP019012.1\|WP_000934041.1\|534231_536508_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP019012.1\|WP_000488716.1\|543723_544419_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP019012.1\|WP_001295343.1\|521673_522285_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP019012.1\|WP_000886683.1\|518936_520229_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP019012.1\|WP_001040187.1\|533329_533548_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP019012.1\|WP_001385255.1\|527722_528688_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP019012.1\|WP_000410785.1\|537181_537406_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47

>NZ_CP019012.1|WP_001040187.1|533329_533548_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP019012.1|WP_001241674.1|532340_533045_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP019012.1|WP_001202204.1|530577_532299_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP019012.1|WP_001043561.1|528810_530577_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP019012.1|WP_001385255.1|527722_528688_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP019012.1|WP_000228473.1|526684_527179_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP019012.1|WP_000077041.1|522443_526550_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP019012.1|WP_001295343.1|521673_522285_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP019012.1|WP_000067797.1|520319_521663_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP019012.1|WP_000886683.1|518936_520229_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP019012.1|WP_000934041.1|534231_536508_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP019012.1|WP_000520781.1|536538_536859_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP019012.1|WP_000410785.1|537181_537406_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP019012.1|WP_000188152.1|537478_539425_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP019012.1|WP_000746478.1|539421_540537_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP019012.1|WP_001351020.1|540687_541644_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP019012.1|WP_000599803.1|541640_543299_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP019012.1|WP_000488716.1|543723_544419_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP019012.1|WP_000491137.1|544833_545733_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP019012.1|WP_000458841.1|545876_547529_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP019012_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019012_4

4597861-4597984

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019012_4

>merge|NZ_CP019012|4|4597861-4597984|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP019012|4|3|4597861-4597984|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019012.1\|WP_000098896.1\|4601864_4603013_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP019012.1\|WP_001182336.1\|4603303_4604515_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP019012.1\|WP_000212681.1\|4597419_4597725_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP019012.1\|WP_000587585.1\|4594865_4595678_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP019012.1\|WP_001070248.1\|4589947_4590574_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP019012.1\|WP_001296102.1\|4592709_4593348_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP019012.1\|WP_000102278.1\|4606880_4606970_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP019012.1\|WP_001295403.1\|4587313_4588726_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP019012.1\|WP_001070015.1\|4594076_4594862_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP019012.1\|WP_000007273.1\|4608450_4609032_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP019012.1\|WP_000269498.1\|4604627_4605560_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP019012.1\|WP_001273524.1\|4590594_4592697_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP019012.1\|WP_000493947.1\|4601183_4601825_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP019012.1\|WP_000190985.1\|4605556_4606582_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP019012.1\|WP_001174939.1\|4599595_4600969_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP019012.1\|WP_000848170.1\|4595689_4597294_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP019012.1\|WP_000701057.1\|4607135_4608305_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP019012.1\|WP_000528342.1\|4589282_4589492_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP019012.1\|WP_000534260.1\|4598298_4599555_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP019012.1\|WP_001296101.1\|4593411_4594080_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451

Protein	Function_ID	Function_description	E-value
NZ_CP019012.1\|WP_000098896.1\|4601864_4603013_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP019012.1\|WP_001182336.1\|4603303_4604515_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP019012.1\|WP_000212681.1\|4597419_4597725_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP019012.1\|WP_000587585.1\|4594865_4595678_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP019012.1\|WP_001070248.1\|4589947_4590574_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP019012.1\|WP_001296102.1\|4592709_4593348_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.79235e-121
NZ_CP019012.1\|WP_001295403.1\|4587313_4588726_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP019012.1\|WP_001070015.1\|4594076_4594862_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP019012.1\|WP_000007273.1\|4608450_4609032_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP019012.1\|WP_000269498.1\|4604627_4605560_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP019012.1\|WP_001273524.1\|4590594_4592697_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP019012.1\|WP_000493947.1\|4601183_4601825_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP019012.1\|WP_000190985.1\|4605556_4606582_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP019012.1\|WP_001174939.1\|4599595_4600969_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP019012.1\|WP_000848170.1\|4595689_4597294_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP019012.1\|WP_000701057.1\|4607135_4608305_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP019012.1\|WP_000528342.1\|4589282_4589492_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP019012.1\|WP_000534260.1\|4598298_4599555_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP019012.1\|WP_001296101.1\|4593411_4594080_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77

>NZ_CP019012.1|WP_000212681.1|4597419_4597725_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP019012.1|WP_000848170.1|4595689_4597294_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP019012.1|WP_000587585.1|4594865_4595678_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP019012.1|WP_001070015.1|4594076_4594862_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP019012.1|WP_001296101.1|4593411_4594080_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP019012.1|WP_001296102.1|4592709_4593348_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP019012.1|WP_001273524.1|4590594_4592697_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP019012.1|WP_001070248.1|4589947_4590574_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP019012.1|WP_000528342.1|4589282_4589492_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP019012.1|WP_001295403.1|4587313_4588726_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP019012.1|WP_000534260.1|4598298_4599555_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP019012.1|WP_001174939.1|4599595_4600969_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP019012.1|WP_000493947.1|4601183_4601825_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP019012.1|WP_000098896.1|4601864_4603013_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP019012.1|WP_001182336.1|4603303_4604515_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP019012.1|WP_000269498.1|4604627_4605560_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP019012.1|WP_000190985.1|4605556_4606582_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP019012.1|WP_000102278.1|4606880_4606970_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP019012.1|WP_000701057.1|4607135_4608305_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP019012.1|WP_000007273.1|4608450_4609032_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019012_1	1.1\|231572\|24\|NZ_CP019012\|PILER-CR	231572-231595	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP019012_1	1.1\|231572\|24\|NZ_CP019012\|PILER-CR	231572-231595	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP019012_1	1.2\|231619\|25\|NZ_CP019012\|PILER-CR	231619-231643	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP019012_1	1.2\|231619\|25\|NZ_CP019012\|PILER-CR	231619-231643	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP019012_1	1.1\|231572\|24\|NZ_CP019012\|PILER-CR	231572-231595	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP019012_1	1.2\|231619\|25\|NZ_CP019012\|PILER-CR	231619-231643	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP019012_2	2.1\|363983\|40\|NZ_CP019012\|CRISPRCasFinder	363983-364022	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
NZ_CP019012_4	4.1\|4597904\|38\|NZ_CP019012\|CRISPRCasFinder	4597904-4597941	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP019012_1	1.2\|231619\|25\|NZ_CP019012\|PILER-CR	231619-231643	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84

1. spacer 1.1|231572|24|NZ_CP019012|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 1.1|231572|24|NZ_CP019012|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 1.2|231619|25|NZ_CP019012|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 1.2|231619|25|NZ_CP019012|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 1.1|231572|24|NZ_CP019012|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

6. spacer 1.2|231619|25|NZ_CP019012|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

7. spacer 2.1|363983|40|NZ_CP019012|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

8. spacer 4.1|4597904|38|NZ_CP019012|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 1.2|231619|25|NZ_CP019012|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2375 : 57961

Stx2-converting_phage(29.63%)

capsid,portal,transposase,holin,tail,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296031.1\|2375_2651_+	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|2647_3205_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000937495.1\|3616_3886_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|3942_4611_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|4809_4992_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_001513292.1\|5117_6086_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	6.5e-47	38.8
WP_001164137.1\|6101_6629_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_000972097.1\|6659_7193_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_023363168.1\|7194_10020_-\|tail	tail protein	Q858V4	Yersinia_virus	9.0e-04	63.6
WP_001016257.1\|10481_11228_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|11242_12784_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000514710.1\|13424_16898_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
WP_061089814.1\|17240_17873_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000194730.1\|17818_18562_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_001296027.1\|18572_19271_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|19270_19612_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|19604_22847_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|22894_23104_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|23199_23574_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|23588_24305_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|24371_24716_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|24712_25159_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|25155_25506_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|25515_25842_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|25838_28424_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|28369_28591_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|28635_30573_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001296023.1\|30636_32298_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958366.1\|32294_32858_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|33147_33513_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|33554_33755_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|33953_34169_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|34254_34440_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|34661_34748_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|35302_35836_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_000369850.1\|35941_36214_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|36179_36524_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|36528_36744_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|36894_38748_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|39008_39344_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|39624_39756_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|40557_41607_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|41758_41956_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|42182_43004_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000140014.1\|43000_43381_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001265085.1\|43381_44437_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|44438_44711_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|44878_45091_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|45271_45937_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|46111_46537_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|46552_47323_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|47344_48091_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|48097_49060_-	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|49082_49508_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|49504_49720_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|49769_50486_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|50758_50914_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|51073_51292_+	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|51857_52046_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|52042_52234_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|52326_54798_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
WP_000113189.1\|54862_55111_+	excisionase	NA	NA	NA	NA
WP_000080195.1\|55544_57158_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|57188_57539_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|57535_57961_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0

DBSCAN-SWA_2

197497 : 243206

Enterobacteria_phage(56.0%)

capsid,portal,tRNA,integrase,holin,tail,terminase,head,lysis

attL 216281:216295|attR 244875:244889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|197497_197776_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|197772_199794_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|199852_203335_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|203395_203998_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|203934_204678_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|204682_205381_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|205380_205710_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|205706_208268_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|208260_208695_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|208676_209099_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|209114_209855_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|209862_210258_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|210254_210833_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|210844_211198_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|211209_211608_-	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|211649_212675_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|212730_213063_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|213072_214392_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|214372_215974_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|215970_216177_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|216173_218099_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
216281:216295	attL	NA	NA	NA	NA
WP_000453620.1\|218073_218619_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|219182_219365_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|219571_219898_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|220378_220672_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|220762_220945_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|221161_221638_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|221624_221930_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|222251_222941_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|222937_223078_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|223074_223437_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|223433_223724_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|223716_223887_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|223886_224342_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|224338_224440_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|224789_225833_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022645049.1\|225869_230135_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|230384_231086_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_001435464.1\|231082_232012_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182900.1\|232098_232638_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|232707_232938_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000259990.1\|232976_233732_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_000233576.1\|234327_234534_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|234609_234906_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|234911_235697_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|235693_236374_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|236370_236553_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|236525_236717_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|236727_237009_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|237107_237329_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|237328_237655_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|237638_237878_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|238017_238254_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|238243_239386_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|239499_240750_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|240921_241575_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|241584_242046_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|242099_243206_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
244875:244889	attR	NA	NA	NA	NA

DBSCAN-SWA_3

440315 : 536859

106

Burkholderia_virus(26.87%)

capsid,protease,transposase,tRNA,integrase,tail,plate

attL 449600:449615|attR 468921:468936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295930.1\|440315_441101_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|441236_442016_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|441992_442886_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|443039_443786_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|443782_443965_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|444016_445249_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570547.1\|445285_446272_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|446268_448017_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|448053_450318_-	ComEC family protein	NA	NA	NA	NA
449600:449615	attL	NA	NA	NA	NA
WP_000167336.1\|450523_450808_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|450967_452641_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|452751_453435_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|453607_454390_-	metallopeptidase YcaL	NA	NA	NA	NA
WP_001281701.1\|454533_454923_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|454894_455344_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|455345_455552_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|455541_455772_-	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|455768_456452_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000763554.1\|456448_456664_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|456678_456975_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|456984_457257_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|457545_458076_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|458103_458373_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|458375_459542_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
WP_000186588.1\|459552_461322_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_001095645.1\|461337_461655_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|461654_462575_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|462585_462894_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|462946_463135_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|463228_463585_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|463701_464466_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|464656_464872_-	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|464870_465275_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|465250_465979_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|466109_466460_+	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|466462_467203_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|467186_467837_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|467833_468160_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|468159_468471_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|468470_469016_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
468921:468936	attR	NA	NA	NA	NA
WP_001295924.1\|469075_470608_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.2e-185	62.8
WP_000090684.1\|470607_472104_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|472084_472906_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|472908_473367_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_001273074.1\|473581_474697_+	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_001286908.1\|474711_475665_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_000537457.1\|475674_476013_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|476014_476461_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|476460_476925_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_012602372.1\|476921_477176_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|477165_478593_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000034294.1\|478592_479114_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000110114.1\|479116_479398_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|479495_479831_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|479754_479913_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|479988_482940_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|482939_483824_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_012602373.1\|483820_484036_+	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|484023_485178_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|485174_485771_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|485825_486173_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|486163_487267_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|487259_487838_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_000527461.1\|487840_489172_+\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	4.8e-40	44.4
WP_000072165.1\|489171_489786_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_023142129.1\|489792_490254_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_064767240.1\|490264_490705_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_000904922.1\|490764_491337_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|491592_492876_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|492946_494035_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000642852.1\|494233_494926_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000194832.1\|495055_496816_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_001295917.1\|497221_498079_+	formate transporter FocA	NA	NA	NA	NA
WP_001292822.1\|498133_500416_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_000111043.1\|500607_501348_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_000109283.1\|501444_502593_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|502906_503533_+	hydrolase	NA	NA	NA	NA
WP_000534666.1\|503568_504432_-	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_000213098.1\|504433_505051_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|505061_507506_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_001067858.1\|507720_508425_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_078177568.1\|508434_508947_+\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	8.7e-83	96.9
WP_001554335.1\|508975_509503_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_023363133.1\|509504_510290_-	hypothetical protein	Q858V4	Yersinia_virus	1.1e-108	76.6
WP_000905061.1\|510517_511117_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|511145_511634_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853410.1\|511646_514454_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000333503.1\|514440_514596_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651577.1\|514604_514979_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000290462.1\|515034_515547_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005447.1\|515546_516731_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000132830.1\|516888_517998_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000488106.1\|518038_518299_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|518490_518631_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000886683.1\|518936_520229_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067797.1\|520319_521663_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|521673_522285_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|522443_526550_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|526684_527179_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_001385255.1\|527722_528688_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.6
WP_001043561.1\|528810_530577_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202204.1\|530577_532299_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	30.8
WP_001241674.1\|532340_533045_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|533329_533548_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|534231_536508_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|536538_536859_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

DBSCAN-SWA_4

1560717 : 1620982

Stx2-converting_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000343765.1\|1560717_1561938_+\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_001295734.1\|1563619_1564336_+	N-acetylneuraminic acid outer membrane channel NanC	NA	NA	NA	NA
WP_001295733.1\|1564355_1565462_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_000991462.1\|1565525_1566506_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	H6WZJ9	Escherichia_phage	4.7e-101	57.2
WP_001363826.1\|1567088_1568132_-	hypothetical protein	NA	NA	NA	NA
WP_085949154.1\|1568257_1569404_+\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	2.4e-173	96.3
WP_000504875.1\|1570174_1571461_+	McrC family protein	NA	NA	NA	NA
WP_000781649.1\|1571570_1573310_+	Alw26I/Eco31I/Esp3I family type II restriction endonuclease	NA	NA	NA	NA
WP_001295727.1\|1573322_1574513_-	DNA cytosine methyltransferase	Q02778	Bacillus_phage	7.3e-16	31.0
WP_001332039.1\|1574505_1576146_-	Alw26I/Eco31I/Esp3I family type II restriction adenine-specific DNA-methyltransferase	NA	NA	NA	NA
WP_001467148.1\|1577458_1577617_-	hypothetical protein	NA	NA	NA	NA
WP_000839286.1\|1577716_1577893_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000761690.1\|1577909_1578398_-	hypothetical protein	NA	NA	NA	NA
WP_000854759.1\|1578394_1578772_-	toxin	NA	NA	NA	NA
WP_001295723.1\|1578861_1579230_-	antitoxin	NA	NA	NA	NA
WP_000692345.1\|1579392_1579614_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186775.1\|1579676_1580153_-	RadC family protein	NA	NA	NA	NA
WP_001350782.1\|1580168_1580642_-	antirestriction protein	A9J566	Pseudomonas_phage	8.7e-13	30.3
WP_001234738.1\|1580983_1581802_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	9.4e-47	39.7
WP_001323397.1\|1581956_1582115_-	DUF905 family protein	NA	NA	NA	NA
WP_021526504.1\|1582185_1585032_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_001553935.1\|1585404_1586277_-	GTPase family protein	NA	NA	NA	NA
WP_000250227.1\|1586361_1587279_-	hypothetical protein	NA	NA	NA	NA
WP_000813435.1\|1588479_1589082_-	hypothetical protein	NA	NA	NA	NA
WP_000211308.1\|1589177_1589384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071526287.1\|1590157_1590307_+	hemolysin activation protein	NA	NA	NA	NA
WP_001547002.1\|1590639_1590837_-	hypothetical protein	NA	NA	NA	NA
WP_000221530.1\|1591036_1591606_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000270962.1\|1591865_1592267_+	hypothetical protein	NA	NA	NA	NA
WP_001221615.1\|1592254_1592689_+	hypothetical protein	NA	NA	NA	NA
WP_001171523.1\|1593043_1593424_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
WP_000612591.1\|1593420_1593768_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998019.1\|1593817_1595203_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3
WP_000823243.1\|1595441_1596800_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_001283626.1\|1598361_1598883_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_001068908.1\|1598879_1599833_+	fec operon regulator FecR	NA	NA	NA	NA
WP_000188262.1\|1599919_1602244_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_000879164.1\|1602288_1603191_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000125187.1\|1603187_1604186_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000684856.1\|1604182_1605139_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000175457.1\|1605139_1605907_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000177057.1\|1606463_1606721_-	hypothetical protein	NA	NA	NA	NA
WP_000088391.1\|1607654_1607957_+\|transposase	transposase	NA	NA	NA	NA
WP_000336726.1\|1607992_1608811_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_001545177.1\|1608965_1610963_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.4e-21	25.9
WP_001296707.1\|1611025_1612303_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_000145475.1\|1612550_1613207_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_000527665.1\|1613387_1613495_-	alcohol dehydrogenase	NA	NA	NA	NA
WP_001387298.1\|1614620_1614719_+	acetolactate synthase	NA	NA	NA	NA
WP_001295538.1\|1614720_1615503_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_000350265.1\|1615808_1616729_+	ribokinase	NA	NA	NA	NA
WP_000998348.1\|1616756_1618073_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_000107487.1\|1618084_1619098_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_000080195.1\|1619368_1620982_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6

DBSCAN-SWA_5

2832930 : 2844551

Stx2-converting_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000809780.1\|2832930_2835267_+	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	1.7e-40	31.2
WP_000719791.1\|2835496_2836150_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_000047069.1\|2836146_2836875_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_000620405.1\|2836871_2837504_-	PhoP regulatory network protein YrbL	NA	NA	NA	NA
WP_000080195.1\|2837576_2839190_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|2839220_2839571_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|2839567_2839993_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000216791.1\|2840256_2840529_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_000243741.1\|2840525_2841380_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-05	28.4
WP_000183674.1\|2841425_2841917_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_001176599.1\|2842034_2842322_-	ribosome hibernation promoting factor	A0A0M7QCF2	Escherichia_phage	2.5e-10	44.3
WP_000809051.1\|2842344_2843778_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_000224099.1\|2843825_2844551_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-22	28.4

DBSCAN-SWA_6

3129437 : 3162572

Stx2-converting_phage(38.46%)

integrase,transposase

attL 3160558:3160572|attR 3169150:3169164

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080195.1\|3129437_3131051_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|3131081_3131432_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|3131428_3131854_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000221563.1\|3132073_3132643_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000271011.1\|3132809_3133193_+	hypothetical protein	NA	NA	NA	NA
WP_000997995.1\|3133413_3134952_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|3136079_3136430_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|3136426_3136852_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|3137223_3137361_-	hypothetical protein	NA	NA	NA	NA
WP_001149834.1\|3137512_3138430_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|3138463_3139339_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|3139387_3140860_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|3140863_3141694_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|3141739_3142450_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|3142462_3143572_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001030790.1\|3143633_3144557_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|3144592_3145327_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|3145426_3146413_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|3146564_3147792_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|3148292_3150383_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001305021.1\|3151214_3151487_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|3151777_3152137_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|3152140_3152356_+	hypothetical protein	NA	NA	NA	NA
WP_032212789.1\|3156233_3157088_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-68	45.4
WP_001254932.1\|3157136_3158288_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000147017.1\|3160007_3161051_-	hypothetical protein	NA	NA	NA	NA
3160558:3160572	attL	NA	NA	NA	NA
WP_001218869.1\|3161306_3162572_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_001218869.1\|3161306_3162572_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
3169150:3169164	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3444541 : 3451681

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279004.1\|3444541_3445180_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5
WP_000590411.1\|3445176_3446439_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|3446435_3447344_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001272542.1\|3447509_3448307_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.0
WP_001141293.1\|3448357_3449014_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|3449119_3451681_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_8

4028965 : 4038410

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|4028965_4029892_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8
WP_000783109.1\|4029896_4030628_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|4030608_4030716_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|4030775_4031507_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|4031728_4033414_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|4033410_4034130_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|4034176_4034647_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|4034687_4035149_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|4035273_4037277_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|4037273_4038410_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7

DBSCAN-SWA_9

4132586 : 4138889

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|4132586_4133981_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|4134155_4135049_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_000699407.1\|4135421_4136507_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_001023641.1\|4136506_4137406_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|4137463_4138342_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|4138346_4138889_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_10

4162036 : 4200227

Stx2-converting_phage(23.08%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531805.1\|4162036_4162495_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.2e-11	31.5
WP_000980556.1\|4162605_4164033_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_001296209.1\|4164241_4165408_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.9e-228	99.5
WP_000115885.1\|4165605_4166124_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000343765.1\|4166142_4167363_+\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_001105368.1\|4167419_4167893_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001200889.1\|4168090_4169149_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|4169320_4169650_+	DUF496 family protein	NA	NA	NA	NA
WP_001296208.1\|4169750_4169933_-	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|4170421_4170535_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000988600.1\|4170547_4170742_-	hypothetical protein	NA	NA	NA	NA
WP_000854815.1\|4170738_4171113_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_001280918.1\|4171201_4171570_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086752.1\|4171585_4172230_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|4172248_4172470_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186200.1\|4172532_4173009_-	RadC family protein	NA	NA	NA	NA
WP_001542276.1\|4173024_4173498_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001164966.1\|4173591_4173837_-	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|4173836_4174655_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_000846703.1\|4174875_4175286_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|4175734_4176481_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_000422741.1\|4177618_4178044_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|4178040_4178391_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080195.1\|4178421_4180035_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_001542273.1\|4180691_4181105_-	hypothetical protein	NA	NA	NA	NA
WP_000102633.1\|4181240_4182311_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203551.1\|4182307_4183213_-	chemotaxis protein	NA	NA	NA	NA
WP_001531797.1\|4183209_4185594_-	hypothetical protein	NA	NA	NA	NA
WP_001069649.1\|4185811_4186246_-	hypothetical protein	NA	NA	NA	NA
WP_000856948.1\|4186674_4188840_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|4188850_4189840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|4189858_4190917_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016207.1\|4190913_4191681_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-14	27.9
WP_001163787.1\|4191734_4191992_+	hypothetical protein	NA	NA	NA	NA
WP_001296206.1\|4192522_4193668_-	hypothetical protein	NA	NA	NA	NA
WP_089438313.1\|4194867_4195047_-\|transposase	transposase	NA	NA	NA	NA
WP_000255956.1\|4195192_4196215_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_000970353.1\|4196214_4196907_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-118	88.4
WP_001327829.1\|4197243_4197459_-	hypothetical protein	NA	NA	NA	NA
WP_000813432.1\|4197932_4198535_-	hypothetical protein	NA	NA	NA	NA
WP_001304240.1\|4198628_4198907_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001296203.1\|4199030_4200227_-\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4322178 : 4408314

Escherichia_phage(22.73%)

capsid,portal,transposase,tRNA,integrase,holin,tail,terminase,plate

attL 4321993:4322052|attR 4364605:4364729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4321993:4322052	attL	NA	NA	NA	NA
WP_001531780.1\|4322178_4323195_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|4323163_4323427_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|4323636_4323819_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|4323818_4324388_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|4324384_4326601_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|4326631_4326952_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|4327962_4328376_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|4328474_4328705_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|4328763_4329240_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|4329279_4329504_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|4329500_4330256_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|4330245_4331661_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|4331699_4332110_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|4332111_4332348_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|4332344_4332656_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|4332652_4332877_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|4333558_4334347_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|4334521_4335445_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|4336633_4337332_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|4337794_4338400_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|4338409_4338898_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|4339296_4339530_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|4339773_4340415_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|4340566_4340746_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|4340823_4341420_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|4341416_4341710_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|4341709_4342381_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|4342493_4342877_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|4342876_4343149_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|4343148_4343628_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|4343635_4343830_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|4343889_4344135_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|4344503_4345070_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|4345056_4346919_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|4346918_4347152_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|4347148_4348723_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|4348722_4350030_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|4350029_4350359_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|4350417_4351452_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|4351486_4351906_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|4351902_4352283_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|4352314_4352995_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|4352991_4353528_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|4353508_4354411_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|4354413_4354755_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|4354751_4355672_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|4355674_4356301_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|4356293_4357478_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|4357477_4357867_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|4357863_4359366_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|4359383_4359896_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|4359908_4360190_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|4360298_4361939_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|4361974_4362364_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|4362525_4362750_+	hypothetical protein	NA	NA	NA	NA
WP_001296152.1\|4363964_4364384_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|4364855_4365521_+	UPF0149 family protein YecA	NA	NA	NA	NA
4364605:4364729	attR	NA	NA	NA	NA
WP_000797555.1\|4365571_4366783_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|4366973_4367213_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|4367250_4367748_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|4367919_4368243_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|4368506_4368593_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|4368707_4368959_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|4369036_4369540_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|4370334_4371324_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_001187827.1\|4371393_4372908_+	arabinose ABC transporter ATP binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000987895.1\|4372919_4373909_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|4374075_4374876_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|4374850_4376275_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|4376281_4376710_-	universal stress protein UspC	NA	NA	NA	NA
WP_001531763.1\|4378252_4380217_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|4380237_4380741_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|4380885_4382547_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|4382837_4383698_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|4383700_4384750_+	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|4384764_4385154_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|4385164_4385809_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|4385997_4387146_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|4387138_4389217_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|4389216_4389609_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|4389661_4391395_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|4391610_4392177_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|4392190_4392937_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|4393324_4394425_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|4394449_4396879_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564759.1\|4396914_4397886_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|4397882_4398626_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|4398666_4399062_-	hypothetical protein	NA	NA	NA	NA
WP_000639277.1\|4399114_4399933_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|4399929_4400496_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|4400805_4402578_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|4402570_4403023_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|4403051_4403792_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|4403826_4404348_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|4404349_4404952_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|4405022_4405088_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|4405226_4405838_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|4405846_4406857_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_099156422.1\|4406966_4408314_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP019012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection