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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013889 Bordetella pertussis strain J105 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP013889
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013889_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013889_2 432032-432125 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013889_3 996348-996442 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013889_4 1819802-1819929 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013889_5 3431417-3431526 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164893 : 303019 116 Klosneuvirus(10.53%) transposase,tRNA,protease NA
DBSCAN-SWA_4 390855 : 448364 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 589367 : 650558 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_6 655882 : 702073 51 uncultured_Caudovirales_phage(18.18%) transposase,terminase,tRNA,tail NA
DBSCAN-SWA_7 708239 : 762169 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_8 853047 : 913923 51 Vibrio_phage(25.0%) transposase NA
DBSCAN-SWA_9 934670 : 998263 58 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_10 1024375 : 1082460 51 uncultured_Mediterranean_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_11 1086506 : 1236200 113 Planktothrix_phage(12.5%) transposase,holin,tRNA NA
DBSCAN-SWA_12 1270675 : 1327886 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_13 1418119 : 1470271 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_14 1514196 : 1582281 57 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_15 1618230 : 1673821 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_16 1831588 : 1890858 51 Klosneuvirus(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_17 1901098 : 1945421 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_18 1975194 : 2039563 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_19 2171089 : 2228368 49 Synechococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_20 2575469 : 2641969 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2670084 : 2707496 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_22 2806623 : 2861140 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_23 2869165 : 2925948 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_24 2956334 : 3000025 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 3122608 : 3186442 56 Pseudomonas_phage(30.0%) transposase,tRNA,protease NA
DBSCAN-SWA_26 3234586 : 3248774 15 Erwinia_phage(100.0%) transposase,protease NA
DBSCAN-SWA_27 3267197 : 3329262 48 Tupanvirus(12.5%) transposase,holin,tRNA,integrase attL 3260591:3260609|attR 3333349:3333367
DBSCAN-SWA_28 3381019 : 3434760 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3440914 : 3500212 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_30 3515150 : 3573223 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_31 4005432 : 4070344 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage