CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019946	Dehalococcoides mccartyi strain KBDCA3 chromosome, complete genome	1 crisprs	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,csa3	0	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019946_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019946_1

276283-278638

TypeI

I-C

Consensus_repeat	Method
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	PILER-CR
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CRISPRCasFinder
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CRT

35 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP019946_1

>merge|NZ_CP019946|1|276283-278638|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTCACGCTCCCGCACGGGGAGCGACGCCCTTATCATCAATAGCCACAGGACGTTTTAAATGGTTTCAATTCACGCTCCCGCACGGGGAGCGACTCTTTTTACCTTTCCTAGCCGGATTACGATTAGGGGTTTCAATTCACGCTCCCGCACGGGGAGCGACTAACGGTTTGTACCGTCTGTAGAAGCCCTTAATGGTTTCAATTCACGCTCCCGCACGGGGAGCGACCCAAAAATCTTACCGGATGGGAGGCTTCAAAAATCGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTACAGGCTATAGTAGGCTATGAGGTGAATTCGAGGTTTCAATTCACGCTCCCGCACGGGGAGCGACCGGAGGTGTTTGATCTGCCGCATCTCTAATTTGTTCGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTATATCATTTTCCAATGCACTATACCCCTGATTTGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTCCTTACCTACTCCGTTACAGAACACCTTTGGGGTTTCAATTCACGCTCCCGCACGGGGAGCGACTGGAGGTGTTCAAATGACAACGATACCGAAGGGTTTCAATTCACGCTCCCGCACGGGGAGCGACCTGCCTCAGTAGAAACAACCAAAGCTATGGATGTTTCAATTCACGCTCCCGCACGGGGAGCGACGAGTGTTATACCTTGCTGCATAACCTGATAAACAGTTTCAATTCACGCTCCCGCACGGGGAGCGACACGCTAACATCTTCAACCCACGTATATTCACTACCTGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTACACCTTTTGCTTGTGCCATAAGATGCTCATACCGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTGATTTTTGCGCTTCCAGACCGCCACGATATACTGGTTTCAATTCACGCTCCCGCACGGGGAGCGACGACGATATCCTTGCCCGACTTCAGGGCGTCAAAAAGTTTCAATTCACGCTCCCGCACGGGGAGCGACCCTAAAGGTATGTGCTTATTCCGCGTTTGATGCCGTTTCAATTCACGCTCCCGCACGGGGAGCGACGCCATGACTAAAGAAGAAACCACCCAGTTAAACGTTTCAATTCACGCTCCCGCACGGGGAGCGACAAGGAACAGATAGCAAGAGAGTATAAGAACCGAAGTTTCAATTCACGCTCCCGCACGGGGAGCGACAATCTGTTCGAGACGCTGGTTATCGCATCCATAGGTTTCAATTCACGCTCCCGCACGGGGAGCGACGTCGCCATTCCCGCCCTCTCTTTCTCGCGCAAATAGTTTCAATTCACGCTCCCGCACGGGGAGCGACATAAGGCAGCAAAAAATGACTGCTTATCTGTTAAGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTTGCCCTTTAGTTCAGGTGTCAGTTTAGAGCGGAGTTTCAATTCACGCTCCCGCACGGGGAGCGACGTTCCTCTGCTGCAAATGGTTACTCCGGACTGGTTTGTTTCAATTCACGCTCCCGCACGGGGAGCGACATATTCTCTGGTTATTTCAGTATCCATATGAATTAGTTTCAATTCACGCTCCCGCACGGGGAGCGACTGATTACCTTCAACTCATGAGTGACTGCCACGATGTTTCAATTCACGCTCCCGCACGGGGAGCGACCACCAACAGCTACAGCAGGTATAAATACAGAACTGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTAGATCATCATTTGTAGCGTCTCCTTTAGCAATGGTTTCAATTCACGCTCCCGCACGGGGAGCGACACTATATCGCCATATATCAGGCAGGGCTAAAACCGTTTCAATTCACGCTCCCGCACGGGGAGCGACGTTTAGGGTTATATCTTTACTCCCAAATAGCTTTGTTTCAATTCACGCTCCCGCACGGGGAGCGACTCCATGCCAGCGGGCCTGACCGCCCACAGATTATTGTTTCAATTCACGCTCCCGCACGGGGAGCGACAGGTGTAGTGAGAGTACCGAGAGAAGTAGTAGAGGGTTTCAATTCACGCTCCCGCACGGGGAGCGACGTCTAACGGTATAGCGTCATCCTCCCGAAGAAGGTTTCAATTCACGCTCCCGCACGGGGAGCGACTTTTAATTCAGAAGTACTACACGGATACGTTGTTTCAATTCACGCTCCCGCACGGGGAGCGACATTTACCCGCTGATAAAATCGTACGTGATGCCACGTTTCAATTCACGCTCCCGCACGGGGAGCGACGCCCAACAATAATGGCGCGTATAACGGCTCTCCCGTTTCAATTCACGCTCCCGCACGGGGAGCGAC

>NZ_CP019946|1|1|276283-278638|PILER-CR
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCTTATCATCAATAGCCACAGGACGTTTTAAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCTTTTTACCTTTCCTAGCCGGATTACGATTAGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TAACGGTTTGTACCGTCTGTAGAAGCCCTTAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCAAAAATCTTACCGGATGGGAGGCTTCAAAAATC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACAGGCTATAGTAGGCTATGAGGTGAATTCGAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CGGAGGTGTTTGATCTGCCGCATCTCTAATTTGTTC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTATATCATTTTCCAATGCACTATACCCCTGATTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTCCTTACCTACTCCGTTACAGAACACCTTTGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGGAGGTGTTCAAATGACAACGATACCGAAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CTGCCTCAGTAGAAACAACCAAAGCTATGGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GAGTGTTATACCTTGCTGCATAACCTGATAAACA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACGCTAACATCTTCAACCCACGTATATTCACTACCT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACACCTTTTGCTTGTGCCATAAGATGCTCATACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTGATTTTTGCGCTTCCAGACCGCCACGATATACTG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GACGATATCCTTGCCCGACTTCAGGGCGTCAAAAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCTAAAGGTATGTGCTTATTCCGCGTTTGATGCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCATGACTAAAGAAGAAACCACCCAGTTAAAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AAGGAACAGATAGCAAGAGAGTATAAGAACCGAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AATCTGTTCGAGACGCTGGTTATCGCATCCATAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCGCCATTCCCGCCCTCTCTTTCTCGCGCAAATA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATAAGGCAGCAAAAAATGACTGCTTATCTGTTAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTGCCCTTTAGTTCAGGTGTCAGTTTAGAGCGGA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTCCTCTGCTGCAAATGGTTACTCCGGACTGGTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATATTCTCTGGTTATTTCAGTATCCATATGAATTA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGATTACCTTCAACTCATGAGTGACTGCCACGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CACCAACAGCTACAGCAGGTATAAATACAGAACT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTAGATCATCATTTGTAGCGTCTCCTTTAGCAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACTATATCGCCATATATCAGGCAGGGCTAAAACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTTAGGGTTATATCTTTACTCCCAAATAGCTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCCATGCCAGCGGGCCTGACCGCCCACAGATTATT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AGGTGTAGTGAGAGTACCGAGAGAAGTAGTAGAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCTAACGGTATAGCGTCATCCTCCCGAAGAAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTTAATTCAGAAGTACTACACGGATACGTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATTTACCCGCTGATAAAATCGTACGTGATGCCAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCAACAATAATGGCGCGTATAACGGCTCTCCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC

>NZ_CP019946|1|1|276283-278638|CRISPRCasFinder
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCTTATCATCAATAGCCACAGGACGTTTTAAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCTTTTTACCTTTCCTAGCCGGATTACGATTAGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TAACGGTTTGTACCGTCTGTAGAAGCCCTTAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCAAAAATCTTACCGGATGGGAGGCTTCAAAAATC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACAGGCTATAGTAGGCTATGAGGTGAATTCGAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CGGAGGTGTTTGATCTGCCGCATCTCTAATTTGTTC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTATATCATTTTCCAATGCACTATACCCCTGATTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTCCTTACCTACTCCGTTACAGAACACCTTTGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGGAGGTGTTCAAATGACAACGATACCGAAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CTGCCTCAGTAGAAACAACCAAAGCTATGGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GAGTGTTATACCTTGCTGCATAACCTGATAAACA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACGCTAACATCTTCAACCCACGTATATTCACTACCT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACACCTTTTGCTTGTGCCATAAGATGCTCATACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTGATTTTTGCGCTTCCAGACCGCCACGATATACTG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GACGATATCCTTGCCCGACTTCAGGGCGTCAAAAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCTAAAGGTATGTGCTTATTCCGCGTTTGATGCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCATGACTAAAGAAGAAACCACCCAGTTAAAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AAGGAACAGATAGCAAGAGAGTATAAGAACCGAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AATCTGTTCGAGACGCTGGTTATCGCATCCATAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCGCCATTCCCGCCCTCTCTTTCTCGCGCAAATA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATAAGGCAGCAAAAAATGACTGCTTATCTGTTAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTGCCCTTTAGTTCAGGTGTCAGTTTAGAGCGGA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTCCTCTGCTGCAAATGGTTACTCCGGACTGGTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATATTCTCTGGTTATTTCAGTATCCATATGAATTA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGATTACCTTCAACTCATGAGTGACTGCCACGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CACCAACAGCTACAGCAGGTATAAATACAGAACT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTAGATCATCATTTGTAGCGTCTCCTTTAGCAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACTATATCGCCATATATCAGGCAGGGCTAAAACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTTAGGGTTATATCTTTACTCCCAAATAGCTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCCATGCCAGCGGGCCTGACCGCCCACAGATTATT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AGGTGTAGTGAGAGTACCGAGAGAAGTAGTAGAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCTAACGGTATAGCGTCATCCTCCCGAAGAAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTTAATTCAGAAGTACTACACGGATACGTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATTTACCCGCTGATAAAATCGTACGTGATGCCAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCAACAATAATGGCGCGTATAACGGCTCTCCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC

>NZ_CP019946|1|1|276283-278638|CRT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCTTATCATCAATAGCCACAGGACGTTTTAAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCTTTTTACCTTTCCTAGCCGGATTACGATTAGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TAACGGTTTGTACCGTCTGTAGAAGCCCTTAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCAAAAATCTTACCGGATGGGAGGCTTCAAAAATC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACAGGCTATAGTAGGCTATGAGGTGAATTCGAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CGGAGGTGTTTGATCTGCCGCATCTCTAATTTGTTC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTATATCATTTTCCAATGCACTATACCCCTGATTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTCCTTACCTACTCCGTTACAGAACACCTTTGGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGGAGGTGTTCAAATGACAACGATACCGAAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CTGCCTCAGTAGAAACAACCAAAGCTATGGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GAGTGTTATACCTTGCTGCATAACCTGATAAACA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACGCTAACATCTTCAACCCACGTATATTCACTACCT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTACACCTTTTGCTTGTGCCATAAGATGCTCATACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTGATTTTTGCGCTTCCAGACCGCCACGATATACTG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GACGATATCCTTGCCCGACTTCAGGGCGTCAAAAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CCTAAAGGTATGTGCTTATTCCGCGTTTGATGCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCATGACTAAAGAAGAAACCACCCAGTTAAAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AAGGAACAGATAGCAAGAGAGTATAAGAACCGAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AATCTGTTCGAGACGCTGGTTATCGCATCCATAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCGCCATTCCCGCCCTCTCTTTCTCGCGCAAATA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATAAGGCAGCAAAAAATGACTGCTTATCTGTTAA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTGCCCTTTAGTTCAGGTGTCAGTTTAGAGCGGA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTCCTCTGCTGCAAATGGTTACTCCGGACTGGTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATATTCTCTGGTTATTTCAGTATCCATATGAATTA
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TGATTACCTTCAACTCATGAGTGACTGCCACGAT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	CACCAACAGCTACAGCAGGTATAAATACAGAACT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTAGATCATCATTTGTAGCGTCTCCTTTAGCAATG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ACTATATCGCCATATATCAGGCAGGGCTAAAACC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTTTAGGGTTATATCTTTACTCCCAAATAGCTTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TCCATGCCAGCGGGCCTGACCGCCCACAGATTATT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	AGGTGTAGTGAGAGTACCGAGAGAAGTAGTAGAGG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GTCTAACGGTATAGCGTCATCCTCCCGAAGAAG
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	TTTTAATTCAGAAGTACTACACGGATACGTT
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	ATTTACCCGCTGATAAAATCGTACGTGATGCCAC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC	GCCCAACAATAATGGCGCGTATAACGGCTCTCCC
GTTTCAATTCACGCTCCCGCACGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019946.1\|WP_012984137.1\|288031_288667_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP019946.1\|WP_078409563.1\|283683_284439_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP019946.1\|WP_011308829.1\|266759_267437_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP019946.1\|WP_078409565.1\|284452_286873_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019946.1\|WP_015406750.1\|280113_280797_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP019946.1\|WP_012984136.1\|287226_288054_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132866
NZ_CP019946.1\|WP_078022427.1\|288671_290264_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP019946.1\|WP_011928636.1\|272820_273093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019946.1\|WP_078409551.1\|271165_272608_+\|reductive-dehalogenase	unknown	unknown	gnl\|CDD\|274158
NZ_CP019946.1\|WP_059280031.1\|268761_268989_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019946.1\|WP_078409555.1\|274845_275274_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133398
NZ_CP019946.1\|WP_078409559.1\|279110_280130_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP019946.1\|WP_078409561.1\|281728_283687_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP019946.1\|WP_015406749.1\|280801_281713_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP019946.1\|WP_078409549.1\|264769_266353_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP019946.1\|WP_015406752.1\|278764_279055_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP019946.1\|WP_078409553.1\|273128_274511_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274158
NZ_CP019946.1\|WP_148284409.1\|275935_276166_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP019946.1\|WP_011308833.1\|270567_270840_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019946.1\|WP_011308830.1\|267433_268714_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP019946.1\|WP_078409563.1\|283683_284439_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.28438e-80
NZ_CP019946.1\|WP_011308829.1\|266759_267437_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.76001e-58
NZ_CP019946.1\|WP_078409565.1\|284452_286873_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.41121e-57
NZ_CP019946.1\|WP_015406750.1\|280113_280797_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.83835e-36
NZ_CP019946.1\|WP_012984136.1\|287226_288054_-\|patatin-family-protein	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	2.2654e-87
NZ_CP019946.1\|WP_015406752.1\|278764_279055_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.87656e-32
NZ_CP019946.1\|WP_012984137.1\|288031_288667_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.78452e-31
NZ_CP019946.1\|WP_078409555.1\|274845_275274_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.45123e-24
NZ_CP019946.1\|WP_078409559.1\|279110_280130_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.25521e-175
NZ_CP019946.1\|WP_078409561.1\|281728_283687_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.01036e-157
NZ_CP019946.1\|WP_148284409.1\|275935_276166_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	5.65315e-13
NZ_CP019946.1\|WP_078409549.1\|264769_266353_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	1.05985e-43
NZ_CP019946.1\|WP_078409553.1\|273128_274511_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274158	TIGR02486, putative_reductive_dehalogenase_partial, reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.	6.13558e-47
NZ_CP019946.1\|WP_078409551.1\|271165_272608_+\|reductive-dehalogenase	gnl\|CDD\|274158	TIGR02486, putative_reductive_dehalogenase_partial, reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.	2.19472e-61
NZ_CP019946.1\|WP_015406749.1\|280801_281713_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	6.14572e-111
NZ_CP019946.1\|WP_078022427.1\|288671_290264_-\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.20592e-32
NZ_CP019946.1\|WP_011308830.1\|267433_268714_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.27631e-54

>NZ_CP019946.1|WP_148284409.1|275935_276166_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MELKYQIILIPDPSGGYVATIEELPGCLSQGDSIEEALDNIAEAKELWLECTYENKQEIELPRTSGNFERYIIRYI
>NZ_CP019946.1|WP_078409555.1|274845_275274_+|MerR-family-transcriptional-regulator
MDIVNIQIGEIAKRVGVSQRTIRYYEEEGLLKPSSVTSAGLRLYTEKEVSRLRFINRLRLLGLSIDSIKITLGLDKPHPSCKKEAMLRSLYALEVAQQKIEEQVELFNIIKQDNEIALASVKECVECTKTSCDGCPLKIHWP
>NZ_CP019946.1|WP_078409553.1|273128_274511_-|4Fe-4S-dicluster-domain-containing-protein
MSELHSKLSRRDFVKGLGVSSAVATGAILASATPLAAADGIDPGEKLDMHDAYSGNSIKRVLPENFYKTLENRPGYIGTTKIVDPGQRFDARQHGFAQISACIGSGNFSEEKSPWGPVLEKAFKAKKQFQSEISAELKEDYIWSGALTNAMDAMHYTLRAGNFDTLPISANKVALTPEEATAKIKKLGHWIGMEMVGICEITEDLKPFFYSKRTTGLKTVGVPAGFTVDGIDVPWPFPYKYCICMADVCDYDAGKALRGPLVEGTGKTSCMVSDFPAYQMECIIRSIGYDAKANAICDTATMSEPIAVRAGLGELGRSGLVISPWGGNFRLTECFTNLPLIPDKPIDFGLQEFCKVCKKCAVNCPAGAISMEDEPSEVVKSARFIGWDTDSHKCLTERIVHGCSTCQAICPWSKPDTIIHEIGRTFGQNKALAPFLVKLDDFFYGSKPEGYDVATWAPWR
>NZ_CP019946.1|WP_011928636.1|272820_273093_-|hypothetical-protein
MTLILLLVGVAMGIFGTWLWNAKNKKNIKLTFIEYLLLAFAVIIFSAGVLFVKTFVEESETNVALMSGLVSSITALILLATTWQLVKRHN
>NZ_CP019946.1|WP_078409551.1|271165_272608_+|reductive-dehalogenase
MTKSGFDVIKADAMANIGTNFKDLDELKSDSLAVEKLPWWIKQKEFWDFTTEMDWSAQKPFEYSIRNFNQHLSPKQAKQYNSRYTQVMEWRKTSKVPGFTHRDYAMKCGADTITLLSDLAGIDKNGESALYWTGSPKLMDVTPTPEEMGCPKYEATPEENLLMIRTFLKVCGASKVGAVPVDVKFKSTQPKFYADKIPLVYENVDKPYITRSKYVIPDRMKWAIVFSTEGGNDLTGRGNNWVGALGASLYSGGPSDYIQIQVQRFLKALGYSSVVSGICYNLQNWPAMGVASGMGELGRMQISVSPFLKWDRAIRCIITDLPVSFTLPIDAGITRFCIDCGRCASVCPVSAINSSRESSWDIWPKDPKNPNLRPELFNNPGKKTWYFGHHLCGAFGRDANDSKCGICMLNCVFNRGTDTILYPFIKPVGANKSALANFLKDMKENFSCTGFESSIPLGEEDQYTLAGESLVENFWNQDSS
>NZ_CP019946.1|WP_011308833.1|270567_270840_+|hypothetical-protein
MWLLLGILIGIIALGIIWWARKSNTSLQWYDWVIGLAGLAMLLFTVQNYFASVAEGESKAASMFLLVAGLPALILLAVVWQLVIRRVKKA
>NZ_CP019946.1|WP_059280031.1|268761_268989_+|hypothetical-protein
MTVTNLYRNFIIYNRKYILLLLGCWYTPLKRPFPATLIIGFIISGKGVQVNKNGGENGIKDVVPLGKPQIFMVLI
>NZ_CP019946.1|WP_011308830.1|267433_268714_-|PAS-domain-S-box-protein
MKMPSPERIGTADYCSQIVKIMQHNTLVGITIVDQKMHQIIRVNQALCKMLGYRKKELLGKTMFDITHPDDMEISYKHAMKIWDDEHCYSKIIKRYSKKDGGFIWAESEGFLLKDNADNGILSVTFIKDITKETTLSSSTPLSISSNPASSSQENPDIDVNKLLSDEINKRKLIYNQLMVSYENEKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADGKYKALASNIYESTMNLNIRLDELLDMAQCEVRDPKLNKSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEVTFIIADEDRLKQILDNLIDNAIKYSADSGIISINISHDQNNVLFSISDSGIGIEPGEIKNIFKPYYRVENRQRKLQGLGLGLSIVRTYVKLHGGRIWVESECGKGTTFLFTIPQPPSKATPA
>NZ_CP019946.1|WP_011308829.1|266759_267437_-|response-regulator-transcription-factor
MKLLFIEDDKKIVESIFLLFKSFWPDMETKAVHLGKTGIETAYKEDFDIAIIDLGLPDIDGINVLKQIRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKRLSRASQDLGVKYGHWKFGTSLKEISYNNIRVNLTVTEGQLLHILLTKAGSTVSYADISKSIWGRNEYYAKETIKTHIMRIRQKLSRIDNSKEFIINIPGVGYQIVE
>NZ_CP019946.1|WP_078409549.1|264769_266353_+|recombinase-family-protein
MSRAVTMIPATKNKFTALPTASIAKRRVAGYARVSTDSDEQFTSYEAQIDYYTKFIKARDDWEFVTVYTDEGISATNTKHRDGFNQMVQDAMGGKIDLIVTKSVSRFARNTVDSLTTVRKLKEHGTEIYFEKENIYTFDSKGELLITIMSSLAQEESRSISENVTWGQRKRFADGKVSMPYKQFLGYEKGDDGTPVVNEEEAKTVRLIYQLFLEGKTPAGICSYLDMRGTPTPSGKQKWSQTTVYSILSNEKYKGDALLQKCFTVDFLMKKMKVNEGEVPQYYVEHSHDAIISPTDWDMVQAEIDRRKTLGRAYSGNSIFSSKLVCGDCGGFFGQKVWHSTDAYRKVIWRCNSKFKGEKKCGTPHLDTETIQQKFLLAYNQLMQKRDGVIADCTQMRRKVSDCTALDAEIEKLTEEIDIVAEMVKACVKENASSALAQEEYTKKYGSLVKRYEKTAFRLDTLSAERARKQDRDRELRLFIEAIKQQPLVLEEWNERLWVGLLEKATVFHEGRMVFQFKNSTEIEVEL
>NZ_CP019946.1|WP_015406752.1|278764_279055_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTETPQGQKRLRQVAKICKNFGQRVQKSVFECLLDPLQLANIRFKLQVTINQEEDSLRIYHLGSNWRPRIEHMGINRPYDPEGPLIR
>NZ_CP019946.1|WP_078409559.1|279110_280130_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKHLLNTLYILTPQSYLCREGETVVVKQEDETKFQLPIHTLSSIICFGLTGASPYLFELCGQNNVSLCFFSQYGKFQGRYTGKLNGNVCLRRIQYRMADDTEFCLGISKTFMQAKIANCRTVLLRANRNYPQNCLLPAIEALKNHTLSLEPATNLAKLRGKEGDAARTYFGVFNSLITKADCGFNFNERSRRPPLDEVNALLSFIYTLLAHDTAAALEGVGLDPAVGFYHQDRPGRPGLALDLMEEMRAFIADRLVLNLINLEQVKPEGFEKTPSGSVLMNEETRKTVLTEYQTRKSREIKHPYLKEKIPIGLLPHVQAVLLARYIRGELDAYPAFIYR
>NZ_CP019946.1|WP_015406750.1|280113_280797_-|CRISPR-associated-protein-Cas4
MPYSEEELISISALQHLAFCPRQAGLIYIAGQWQDNPLTFEGTELHKSAHQPQSQSRSRIIISHSLYLRSLKLGLVGMADIVEFHPKLKAEGGVKVASQQGYYFPHIVEYKRGNLKLDNCDLVQVCAQAICLEEMLGVAISEAEIFYGQPRRRHKVTLNLELRNQTARLAEEMHELIETSTIPPAKYKPGCKKCSLSDICAPEIGLAGSAKVYLTQNLKEALNETPA
>NZ_CP019946.1|WP_015406749.1|280801_281713_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLTKKIDFAVIFKVENANPNGDPLAGNRPRINYDSLGEVSDVCLKRKIRNRLLERGIDIFVQSDDNKIDGCKNLNERFDNLLKTDKEARSSKIETTEIVAKACAKWFDVRAFGQLFAYKSEGSNSKSKGKNKEASIEGQEESTKADSVSIGIRGPVSIQSAFSCQPVDITSIQITKSASSTGDGNKKSSDTMGMKHRVDRGVYVTFGSMNPQLAAKTGFSDQDAQIIKEILPKLFESDASSARPEGSMEVEKVIWWQHNCPSGQTSSAKIHRSLDVDDSDFNNIKIRFKEHTGPKPEIIPGY
>NZ_CP019946.1|WP_078409561.1|281728_283687_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMYDLYQTYQNCISIVGKESGKIPLNPVGHVTVKQAHIEVRLDGNGNFKGAEVITNPNKARTIIPATEKSAGRTCGPEAHPLCDKLQYSARDYKESCGEKPPHFDKYIEQLADWATSEYAHSKVKAVYQYQKNANLISDLIRHKILIPDKYGKMLEKWEGDKKDKPLIFRATKQQAESFVRWRVEIEGDPCPELHLDKAVWENWQQYLQSKEPVKGFCCVSGKETSLATQHPRKIRSDGDGAKLISSNDTANFTFRGRFTQAEQACSIGFDVTQKAHSALRWLIGLQGKNYDNLSVVAWAISGNNIPNPTQNTYELFPQTEQEAQASTPYTAQEVSSSLIKLIGGYKAKLAPTENIAMLMLDSATTGRISIKFYQRLTSADFLEKLYAWHNPDIGCSWHQYFSKTQKFLGAPSAANIASIVYPGSNKGDNNMRANAISCILPSIIQGRPLPRDIIQSCIRQTIRLGGIKSKQKDTKDIKTPNNWFLFEKALGIACALYRYQNKNRRYQVSLERDRTSRDYLYGRLLAVAEALEQSTLDNNSENRSTNAERLFQKFAERPFYTWSILEPLLNPYKMRLRNKNPNYLIFYQKKLDEIACKFLPEDFTSDKKLSGEFLLGYHCQRADIYREKVLKEEAPEEDSLEDHTETHKN
>NZ_CP019946.1|WP_078409563.1|283683_284439_-|type-I-C-CRISPR-associated-protein-Cas5
MEKRIDFLLYGKYALFTDPVTKIGGEKCSYHLPTYEALKGVARSIYWKPTFIWVIERVRVLKPIKTQSKNIKTLKYKGGNSDLSIYNYLWDVAYQVQARMEWNPQRPDLAHDRINAKHFSMAQRSLEKGGRQDVFLGTRECQGYVEPCTYGEDQGYYDNIPELALGLMFRNFSYPSETGGDDFCSHFWYPVMKNGEVIFTPPDSSIRTKFIRKMKPYYPQLATEGDRGLAACYSCEEDCKLYQPSLGETTL
>NZ_CP019946.1|WP_078409565.1|284452_286873_-|CRISPR-associated-helicase/endonuclease-Cas3
MKESSKYIARYNPETERYQYVADHLLEVAIICSGFSSKIGLKNCGYVTGLLHDLGKYSAEFQKYIRINIGLRRVASSHTDSSCPKPDHSSAGGQYIRKALISGDTQAEIVAQAIAIAVFSHHTGLPDCIGLDGTDNLIFRFKKEDLKTHLSEVSGKMESQVKEKLNSHLQSEVYKQEFGQLVEAVQSLKESSCVSNIHLGLALRFLFSTLIDADRLNAAGRKPRLKQIWNTQVKNLEDYLRTFKTDTPLNLIRQQVSDTCLKRSPEKPGLYKLSVPTGGGKTLSSLRFALHHAHKHSLERIFYIAPYTTILDQNATVIRQVLNVQAENPLILEHHSNILEDTGNPVNEQLAENWEAPIVLTTSVQFLETFYSNKTGCTRRLHNLAKSVVIFDEVQALPDEMIYLFNNTVNFLTRMCDSTVLLCTATQPPLDKVDDMKGTIYFSASAELAPNPNELYLKLNKRVKVENRCKDGGHTNEEVQNIIREQATQSKKILVVVNTKTQARELYASLKIEFANIYHLSTSMCPCHRRETLSKLKEKLESVEPSSRPLVCISTQLIEAGVDIDFEVVVRYLAGMDSITQSAGRCNRHFRQEQGLVILLNPAGETLKHLQDIETGKFITNRVLTEYATCPETYQNHLLHPELLARYYHYYFFKQKNKMDYQEKINGISESILNMYSNQHNGVAAYNRINKESPKLYFSQAFKTAGDHFKVIDNSAKGIIANCNSEAENIITRLCASQNITELNLLLKKAQQYSVNLFEYEFEKLAELKGLHETQPESGIFYLDKNFYNSETGVSAEPNQSAFTFF
>NZ_CP019946.1|WP_012984136.1|287226_288054_-|patatin-family-protein
MPKSKVPKIGIALGGGAARGIIHIGVLEVLEKEGLPLDLVTGTSMGAIIGALYASGHKPQEMKEIVHNLSWKQLMPLLDLAAPRAGFLSSRKIKSYLKELIGDITFAELKKPFACVAADVKTGEEVIFNEGLVIDGVIASMSLPIIFRPVKNKNRFLVDGGIITPIPAQIVRDMGADFVIAVNAIYRHDYIKQNRDSEPSVFDTAFQIVNIMSIHMAQENLLAADIAIEPDLSGIGPGDFLKAPEIVLRGELGATDAVPHLKHLLLQKFSYAPPI
>NZ_CP019946.1|WP_012984137.1|288031_288667_-|GNAT-family-N-acetyltransferase
MPDIFEATNGQGFKQAVVESQNLRLRIIQAADAYKAFSLIKDPEVTRYLMWDSPKTINELRLAYRDEAADFETGHRYSFAIERVDKPGLIGSLAFRLIGYKEQALIGYWLGHKYWTKGYMTEAIRLSVHFAFKHLKAERIFGGVFKGNQPSRRTLEKNGFQLDGTLRRDILVRGTWTDVWFMSLLREEWEQNPARYTPLTEEVIHAQIQSA
>NZ_CP019946.1|WP_078022427.1|288671_290264_-|ATP-binding-protein
MTTENKLGIVIGGSLSGGVDVRLNGETLVEDMAVGRYVTIQGKTKRFLGMITDVSLGVTDQRLMLTPPASDEKFLAEILSGTAAYGDLKVIPYLVLGSDEKSLLDGPQPVKTIPSHYAPVDIASNEDIEMVFGKEDATHFYVGNPLDMETRLCLNLPELVKRSNGIFGKSGTGKTFLTRTLLVGMLQKGSCVNLVFDMHSEYGWEGTSEKKHKVKALKQLFPDRVAVFTLDGESSRKRKVSVDFEVKIGYDEIEPEDISLLRQTLNLTEQAVEAVYQLRKHFKKNWIKEANNIGDEEEDKKLLDTLSIHESTFQNLRRGLNTLPRLPFIVENAPVKAVDRVLEYLNRNINVVLEFGRYTDITAYILVANLLTRRIYTSYRDHMEQAMAEDASKPTPLVITIEEAHKFLNPEVASRTIFGTIAREMRKYNVTLLIIDQRPSGIDPEVMSQLGTKITALLDNEKDIDAVLSGVSGKNELKGVLAKLASRQQALIFGAAVPMPVAFVPREYDQNIYNEVSQKKISSEEIEELF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019946_1	1.10\|276915\|32\|NZ_CP019946\|PILER-CR,CRISPRCasFinder,CRT	276915-276946	32	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	318891-318922	9	0.719
NZ_CP019946_1	1.10\|276915\|32\|NZ_CP019946\|PILER-CR,CRISPRCasFinder,CRT	276915-276946	32	MN694527	Marine virus AFVG_250M568, complete genome	7356-7387	9	0.719
NZ_CP019946_1	1.26\|277980\|34\|NZ_CP019946\|PILER-CR,CRISPRCasFinder,CRT	277980-278013	34	HQ317391	Cyanophage S-SSM6a genomic sequence	138891-138924	9	0.735
NZ_CP019946_1	1.26\|277980\|34\|NZ_CP019946\|PILER-CR,CRISPRCasFinder,CRT	277980-278013	34	GU071098	Synechococcus phage S-SSM7, complete genome	17865-17898	9	0.735
NZ_CP019946_1	1.31\|278312\|35\|NZ_CP019946\|PILER-CR,CRISPRCasFinder,CRT	278312-278346	35	NZ_CP025801	Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence	34221-34255	11	0.686

1. spacer 1.10|276915|32|NZ_CP019946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcctcagtagaaacaaccaaagctatggat	CRISPR spacer
ctgcatcagtggaaacaaccaaaaaaatcttc	Protospacer
**** *****.************.  **   .

2. spacer 1.10|276915|32|NZ_CP019946|PILER-CR,CRISPRCasFinder,CRT matches to MN694527 (Marine virus AFVG_250M568, complete genome) position: , mismatch: 9, identity: 0.719

ctgcctcagtagaaacaaccaaagctatggat	CRISPR spacer
acccagcagtagaaacagcaaaagctatgctt	Protospacer
 . *  ***********.* *********  *

3. spacer 1.26|277980|34|NZ_CP019946|PILER-CR,CRISPRCasFinder,CRT matches to HQ317391 (Cyanophage S-SSM6a genomic sequence) position: , mismatch: 9, identity: 0.735

caccaacagctacagcaggtataaatacagaact	CRISPR spacer
aaccaccagctacagctggtataaacagttcatt	Protospacer
 **** ********** ********.*    *.*

4. spacer 1.26|277980|34|NZ_CP019946|PILER-CR,CRISPRCasFinder,CRT matches to GU071098 (Synechococcus phage S-SSM7, complete genome) position: , mismatch: 9, identity: 0.735

caccaacagctacagcaggtataaatacagaact	CRISPR spacer
aaccaccagctacagctggtataaacagttcatt	Protospacer
 **** ********** ********.*    *.*

5. spacer 1.31|278312|35|NZ_CP019946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025801 (Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence) position: , mismatch: 11, identity: 0.686

aggtgtagtgagagtaccgagagaagtagtagagg	CRISPR spacer
ttagttaatgagagcaccgagagaagtagtgaggc	Protospacer
  .  **.******.***************...*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

184877 : 191655

uncultured_Mediterranean_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015406802.1\|184877_185357_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.3e-26	42.1
WP_011308804.1\|185445_185700_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	7.0e-17	52.3
WP_012984122.1\|185810_186299_-	CvpA family protein	NA	NA	NA	NA
WP_011308806.1\|186392_187196_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	4.6e-30	34.7
WP_078409468.1\|187197_189639_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.9e-213	48.0
WP_011928670.1\|189813_191121_+	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	5.2e-15	42.3
WP_012984125.1\|191124_191655_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.9e-40	50.9

DBSCAN-SWA_2

222207 : 256039

Erysipelothrix_phage(72.41%)

protease,capsid,portal,tail,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078409488.1\|222207_223782_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	9.0e-38	25.7
WP_078409490.1\|223871_224093_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	4.8e-14	50.9
WP_172819612.1\|224120_224948_-	hypothetical protein	NA	NA	NA	NA
WP_078409494.1\|225396_225909_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_078409496.1\|226049_226253_+	hypothetical protein	NA	NA	NA	NA
WP_078409498.1\|226206_226509_+	DNA ligase	D0R0B4	Streptococcus_phage	4.9e-09	36.6
WP_078409500.1\|226505_227639_+	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	2.6e-127	59.1
WP_078409502.1\|227640_228213_+	DUF2815 family protein	Q6DMW3	Streptococcus_phage	1.1e-70	72.3
WP_078409504.1\|228283_230266_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	1.1e-274	69.4
WP_078409506.1\|230346_231120_+	phage antirepressor KilAC domain-containing protein	A0A0B5A507	Paenibacillus_phage	9.8e-62	47.3
WP_078409508.1\|231116_231542_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	4.0e-41	56.0
WP_078409806.1\|231541_233812_+	primase C-terminal domain-containing protein	E4ZFK6	Streptococcus_phage	1.7e-210	49.0
WP_078409510.1\|233944_234226_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.3e-24	62.0
WP_078409512.1\|234206_235556_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	9.7e-166	70.5
WP_078409514.1\|235613_236051_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_153300858.1\|236175_236442_-	hypothetical protein	NA	NA	NA	NA
WP_078409518.1\|236528_236891_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	2.3e-53	76.9
WP_078409808.1\|237062_237614_+\|terminase	P27 family phage terminase small subunit	A0A2K5B277	Erysipelothrix_phage	1.0e-89	85.2
WP_077997914.1\|237615_238794_+	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	1.0e-171	76.2
WP_077997915.1\|238768_240001_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	3.8e-185	75.9
WP_078409520.1\|239993_241808_+	DNA cytosine methyltransferase	A0A2K9V3X0	Faecalibacterium_phage	3.6e-30	56.9
WP_078409522.1\|241913_242576_+	virulence protein	A0A2K5B280	Erysipelothrix_phage	1.2e-55	51.8
WP_077998329.1\|242568_242901_+	hypothetical protein	NA	NA	NA	NA
WP_078409524.1\|242897_243128_+	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	1.3e-17	65.2
WP_078409526.1\|243120_243420_+	hypothetical protein	NA	NA	NA	NA
WP_078409810.1\|243526_245137_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	2.3e-291	91.3
WP_078409528.1\|245198_245720_+	hypothetical protein	NA	NA	NA	NA
WP_078409530.1\|245726_247412_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_078409532.1\|247454_247880_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_078409812.1\|247956_249216_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.9e-224	91.1
WP_077997922.1\|249212_249935_+\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	1.3e-97	79.6
WP_077997923.1\|249956_251144_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	3.7e-129	60.0
WP_077997924.1\|251162_251471_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	5.3e-43	83.3
WP_077997925.1\|251473_251806_+\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	2.4e-33	67.0
WP_077997926.1\|251798_252230_+	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	1.6e-42	61.5
WP_077997927.1\|252226_252565_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	2.1e-29	55.9
WP_077997928.1\|252568_253171_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	4.0e-79	74.6
WP_077997929.1\|253170_253557_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	1.2e-39	69.6
WP_078022420.1\|253759_256039_+\|tail	phage tail protein	A0A2K5B297	Erysipelothrix_phage	1.5e-22	65.6

DBSCAN-SWA_3

457220 : 472639

Bacillus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078409606.1\|457220_458513_+	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	4.4e-22	23.8
WP_015407615.1\|458514_459717_+	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	1.0e-17	33.0
WP_077997988.1\|459734_460916_+	NTP transferase domain-containing protein	A0A1D7XFC1	Escherichia_phage	2.9e-17	32.9
WP_078409608.1\|460916_462698_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HMK6	Paramecium_bursaria_Chlorella_virus	2.3e-98	37.2
WP_011309049.1\|462705_463158_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_011309050.1\|463169_463874_-	HAD family hydrolase	NA	NA	NA	NA
WP_078409610.1\|464010_465315_+	diaminopimelate decarboxylase	A0A0N7KVV8	Yellowstone_lake_phycodnavirus	2.9e-18	25.4
WP_078409612.1\|465328_466360_+	DNA polymerase III subunit delta'	A0A1U9WR94	Streptococcus_virus	6.6e-13	26.8
WP_015406971.1\|466352_467186_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_011309054.1\|467174_467705_-	HNH endonuclease	H6WG01	Cyanophage	4.4e-21	36.6
WP_077997990.1\|467776_469186_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	9.6e-23	33.0
WP_077997991.1\|469109_469820_-	DnaD domain protein	NA	NA	NA	NA
WP_011309057.1\|469816_471193_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-87	40.9
WP_011309058.1\|471193_471649_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_011309059.1\|471718_472639_-	thioredoxin-disulfide reductase	A0A249XZT7	Enterococcus_phage	5.1e-49	40.5

DBSCAN-SWA_4

808387 : 817699

Geobacillus_phage(33.33%)