CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019952	Pseudomonas parafulva strain PRS09-11288 chromosome, complete genome	1 crisprs	csa3,DEDDh,cas3,DinG,RT	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019952_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019952_1

1780339-1780414

Orphan

Consensus_repeat	Method
TCACCTTTACGTAAACGTAAACCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019952_1

>merge|NZ_CP019952|1|1780339-1780414|CRISPRCasFinder
TCACCTTTACGTAAACGTAAACCTGCACCTGCTTTTTTGTCAATTTATCCGTCACCTTTACGTAAACGTAAATCTG

>NZ_CP019952|1|1|1780339-1780414|CRISPRCasFinder
TCACCTTTACGTAAACGTAAACCTG	CACCTGCTTTTTTGTCAATTTATCCG
TCACCTTTACGTAAACGTAAATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019952.1\|WP_078478322.1\|1771198_1772452_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP019952.1\|WP_078478327.1\|1779078_1780242_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP019952.1\|WP_058639576.1\|1793026_1795801_-\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NZ_CP019952.1\|WP_027916232.1\|1769827_1771132_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|162036
NZ_CP019952.1\|WP_078478325.1\|1773888_1774542_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP019952.1\|WP_058639572.1\|1782605_1784624_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NZ_CP019952.1\|WP_058639776.1\|1768388_1769708_+\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|234968
NZ_CP019952.1\|WP_058639575.1\|1790435_1792589_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP019952.1\|WP_078478326.1\|1774606_1776559_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NZ_CP019952.1\|WP_058639582.1\|1795797_1797867_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237737
NZ_CP019952.1\|WP_078478329.1\|1784694_1788015_+\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NZ_CP019952.1\|WP_078478328.1\|1780474_1782151_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP019952.1\|WP_058639574.1\|1788011_1790222_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP019952.1\|WP_078478324.1\|1773446_1773758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019952.1\|WP_058639578.1\|1801842_1802826_+\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP019952.1\|WP_058605056.1\|1776555_1777371_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
NZ_CP019952.1\|WP_027916213.1\|1799620_1801180_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP019952.1\|WP_078478323.1\|1772495_1773011_-\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|379797
NZ_CP019952.1\|WP_058605048.1\|1792716_1793010_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP019952.1\|WP_058639569.1\|1777375_1778983_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415

Protein	Function_ID	Function_description	E-value
NZ_CP019952.1\|WP_078478322.1\|1771198_1772452_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	3.12249e-172
NZ_CP019952.1\|WP_078478327.1\|1779078_1780242_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP019952.1\|WP_058639576.1\|1793026_1795801_-\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NZ_CP019952.1\|WP_027916232.1\|1769827_1771132_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|162036	TIGR00784, Mg2+/citrate_complex_secondary_transporter, citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP019952.1\|WP_078478325.1\|1773888_1774542_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.73457e-18
NZ_CP019952.1\|WP_058639572.1\|1782605_1784624_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP019952.1\|WP_058639776.1\|1768388_1769708_+\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP019952.1\|WP_058639575.1\|1790435_1792589_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP019952.1\|WP_078478326.1\|1774606_1776559_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP019952.1\|WP_058639582.1\|1795797_1797867_-\|4-alpha-glucanotransferase	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	2.63474e-165
NZ_CP019952.1\|WP_078478329.1\|1784694_1788015_+\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP019952.1\|WP_078478328.1\|1780474_1782151_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP019952.1\|WP_058639574.1\|1788011_1790222_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP019952.1\|WP_058639578.1\|1801842_1802826_+\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP019952.1\|WP_058605056.1\|1776555_1777371_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	2.29621e-175
NZ_CP019952.1\|WP_027916213.1\|1799620_1801180_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP019952.1\|WP_078478323.1\|1772495_1773011_-\|DUF4880-domain-containing-protein	gnl\|CDD\|379797	pfam16220, DUF4880, Domain of unknown function (DUF4880). This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	1.2745e-08
NZ_CP019952.1\|WP_058605048.1\|1792716_1793010_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.10524e-11
NZ_CP019952.1\|WP_058639569.1\|1777375_1778983_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0

>NZ_CP019952.1|WP_078478327.1|1779078_1780242_-|isovaleryl-CoA-dehydrogenase
MHYPSLNFALGETIDMLRDQVRTFAAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRASASVALSYGAHSNLCVNQINRNGTPAQKAKYLPKLVSGEHVGALAMSEPNAGSDVVSMKLRADKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWAGFSRSNKFDKLGMRGSNTCELFFDDVHVPEQNILGQLNGGVRVLMSGLDYERVVLAGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNASRAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
>NZ_CP019952.1|WP_058639569.1|1777375_1778983_-|methylcrotonoyl-CoA-carboxylase
MMILKTQVNPRSPEFAQSQAAMLAQVDNLRVLLAQVAQGGGAKAQERHTSRGKLLPRERIERLLDAGSAFLEIGQLAAHQVYGEDVPAAGLIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQTIALQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSALGIAQIAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVKAATGEVVSAEALGGADVHCRTSGVADHYAENDEHALALARRCVANLNWRKLGALQCKPPVAPLYAAQELYGVIPADAKQPFDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLHGYPIAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLVQVKREQSERSGEPFGAEDEARLRQPILDQYEHQGHPYYSSARLWDDGVIDPAQTRDVLALALSAALNAPIEPSRFGIFRM
>NZ_CP019952.1|WP_058605056.1|1776555_1777371_-|gamma-carboxygeranoyl-CoA-hydratase
MSDFTTVEVSHDPRGFATLWLSREDKHNAFNALMIRELNIALGQLADDAGVRFVLLRGRGRHFSAGADLAWMQQSAQLDFNTNLDDARELGELMYALHRIKVPTLAVVQGAAFGGALGLISCCDMAIGAEDAQLCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFSGLQAQALGLLAEVYPASQLEASVNQWVETLLANSPQAMRATKELLREVDGGTLSPGLRRYCENAIARIRVSAEGQEGLRAFLEKRQPAWQADANKEPRP
>NZ_CP019952.1|WP_078478326.1|1774606_1776559_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MNRPPLTTLLVANRGEIACRVMRTAKAMGLTTVAVHSAIDRNARHSRQADVCVDLGGNKAADSYLQIDKLVAAAKASGAQAIHPGYGFLSENADFARAVEAAGLMFLGPPASAIDAMGSKSAAKALMESAGVPLVPGYHGQAQDLDTFKQAARHVGYPVLLKASAGGGGKGMKVVEDESQLADALASAQREALSSFGDARMLVEKYVLKPRHVEIQIFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLSADLRRAMGEAAVRAAQAIGYVGAGTVEFLLDARGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVACGEPLPITQDQVPLNGHAIEVRLYAEDPANDFLPATGTLTLYREPACGPGRRVDSGVSEGDAVSPFYDPMLGKLIAWGEDREQARLRLLAMLDEFAVGGVKTNIAFLRRILAHPGFAAAELDTGFIPRHQETLLPAAQALSAEGWEAAAQAWLLSEPARARVDDPHSPWARQDGLRLGAGTSLNVHLTHNGHDQAVTLNQKTQGIWSLQGDWLMREQAGLRTRHLAIRKGASLYLHWDGELHTLEAFDPLAQAAIDLAHQGGLTAPMNGSIVRVLVEVGQAVEAGAPLVVLEAMKMEHSIRAPKATTVKALLCQEGDMVSEGAALVELEP
>NZ_CP019952.1|WP_078478325.1|1773888_1774542_+|helix-turn-helix-domain-containing-protein
MENWNAFLKRYKREHNLSQLKLAERLGMTQGGVGHWLRGTRRPTLETINEKLEKLGLVFLEAQVMVVERDLMRESPGRYGAQPPVSAQALLYASFRFPVLKWADLQGPLPETSEVHEQTDYMPAGNAFWLAVENDSMNAASGKSVPEGMRVLVDTGLPVEPGRLVIARQPGKAPVLRQLVEEGGDKMLKPLNTRYPTVLCETGCEFLGVVVRVHGAF
>NZ_CP019952.1|WP_078478324.1|1773446_1773758_-|hypothetical-protein
MKHPKNDETDLDSEAARRALDYYLNPNPPRPTPENRIWTLHEGVTRDQAQEHAIALLRCAAATAQETATHQHGGQRELLFALMHMMDMARALLEHQRTADPAA
>NZ_CP019952.1|WP_078478323.1|1772495_1773011_-|DUF4880-domain-containing-protein
MTRMLLRLHTPLPEHAADSDAALLLALKRLPRAAQQVFLLSRLDQLAQARVATRLGLPLRSVERLMVQALLAGQPRPDGPTSQAARWYVRLQSPDVTACERIDFRRWLDASPNHLQAFHATELRWRSLYAPALALGRDGWYRKGRAALSLGGCSIAAALGMAVLVLLGLWT
>NZ_CP019952.1|WP_078478322.1|1771198_1772452_+|OprD-family-porin
MSLTLARGAACGLLCGCLPVAGATDFIEDSKLKLQLRNVYFNENFRDEQGMSPRAAATAKSERTEWAQGFLLDYQSGYTPGTLGLGLDALGLLGVRLDSGRGRSGTGLLPVHDDGRAADTFASAGVTVKARVGQSLVRHGTLLPKLPVLVHNDARLMPQTYQGTQLTSTALDNLTLTAGHLTRFKQRDSSNSTGLYLDGYSGGEAGDFSFAGADYTFSKQLRLSYYHGQLEHFYRQDFAGLVHDHALAGGVLTTDLRYFKSKSTGAAYGGPIDNDMLSGQIAYTHSGHTFGAGYQQLNGKAGLPYISGATVYSFSNVGIGKFIEEDEKTWMASYVYNFAAAGVPGLTFMTRYLSGDNGRSGAAGLSEWERDAELAYVVQSGPAKGLGVKLRNYVYRSDFARGRDSNRLYLTYDIALW
>NZ_CP019952.1|WP_027916232.1|1769827_1771132_+|TRAP-transporter-large-permease-subunit
MLALLGLIMVVTFTYLIMSKRLSPIVALTVVPIVFALVGGFAPDLGKMMLDGLKMVAPSAALLLFAILFFGLMIDAGLFDPLIRKILKRVNGDPIKIAIGTALLSLLVALDGDGTTTYMITCAAMLPLYKRIGMNPMILATVSMLSLSIMSGMSPWGGPATRAIAALGLDATDYFIPMLPTVIGGAAWVVFTAYLLGRAERRRIGNVALESGGGNCYIKEILGDTPHKRPRLAYVNLVLVIVVMTALVLGLMHAAILFMIGFVAALMINYPQLELQKERILAHSGNAMTVVLLVFAAGIFAGIFSGTKMVDALAQTLVDWIPEAWSHWFPLVVALTSMPLTFVLSNDAYYFGVVPILANAAAAYGIDPVEIARASVLGQPVHLMSPLVASTLLLVGMVDKDIGDFQKATVKWAVLTSLVITALAVLTGALSFFV
>NZ_CP019952.1|WP_058639776.1|1768388_1769708_+|C4-dicarboxylate-transporter-DctA
MKLAKSLYFQILCAVVLGVVVGHFWAQQAVALKPLGDAFIKLVKMMIAPVVFCTIVTGIAGMTDKRSLGRLMSKTLLLFLGLTIVSLIIGLAAVYLFKPGVGMNIDPATLSTEGLTQFTASAAKLGVVDFFMHIIPDTFMGAFNKGEVLPVLFIAVLSGFALSSMGEKGKPVLDVLEAASAMVFRIFGYLMRFAPVGAFGALAFTVGQYGVTSLGSLAKLIGTLYIACAFFVLVVLGGICRAHGFSLWKLLRYFREEFLVVLGTSSTEPVLPRMLEKLEKLGCKKGVVGLVLPTGYSFNLDGTAIYLSLAAVFIAQACNIDLSLGQVVTMLAIMLLSSKGAAGVTGSGFVALASTLTVIHDIPLAGLALLIGIDRFMSEARALTSLASNAVATVVVSISENACDKQILLSRLNGEPVVEPAPAAVGPDATWVAKPSHHG
>NZ_CP019952.1|WP_078478328.1|1780474_1782151_+|AMP-binding-protein
MTQPSYTRGRQDRPLLTQTIGQAFDATVARLGEQEALVARHQRLRYSWRQLAEQVESCARALMALGIETGDRVGIWAPNCAQWCILQVATAKVGAILVNVNPAYRVGELEYVLRQSGCSWLVCADAFKHSDYHAMAQALVPELATAAPGQISSAALPALRGVVSLANDPPAGFLPWEALATWGMSVSREACTARQNSLHFDQPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGASLGLTAHDRMVIPVPLYHCFGMVMGNLGCITHGTTMIYPGDGFDAELALRAVAEERGTILYGVPTMFIAMLDHPARQRMDLSSLRSGIMAGATCPIEVMRRVIDQMHMAQVQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLESKIIDPQGATVARGETGELCTRGYSVMLGYWDNPEATASAIDAAGWMHSGDLAVMDEAGYVRIVGRNKDMIIRGGENIYPREIEEFFYTHPAVADAQVIGIPCSRYGEDIVAWVKLHPGHQATAEELQAWCKSRIAHYKVPRHIRFVDEFPMTVTGKVQKFRMREISVAELGRVE
>NZ_CP019952.1|WP_058639572.1|1782605_1784624_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MSLNEPFESVPTANDHPDQVISLSQALMAPRIAIEDTQPVLDGGAFAAKAISNQPVSVSTKVFTDGHDRMAVVLNWCQAGSRRIHCVPMTSPGNDLWLAEFTPTEIGPHVFSIEAWIDPYATYCYDLEKKFNAGVGVKLELEEGRLLLGKGIELSSGALREQLQSLQATLQTLPEDEQVALLLGAEASQMMAAAEHRSYLTRSCNYPLDVDRPAAQFASWYELFPRSITDDPQRHGTFNDVHQRLPMIRDMGFDVLYFPPIHPIGMQHRKGRNNSLQAQPGDPGSPYAIGSADGGHDAIHPELGTREDFRRLVSAAAQHGLEIALDFAIQCSQDHPWLQEHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAVPGLWIALRDVIIGWVEEGVKTFRVDNPHTKPLPFWQWLIANVRSRYPDVLFLAEAFTKPAMMARLGKVGYAQSYTYFTWRNTKQELSEYFETLNQPPWSQCYRPNFFVNTPDINPFFLQQNGRAGFLIRAALATMGSGLWGMYSGFELCEAAGLPGKEEYLDSEKYEIRPRDFTQPGNIIAEIAQLNRIRRQNPALQSHLGLTLLNCWNDNILYFAKRTPARDNYILIAVSLDPHNAQEAHFELPLWELGLDDGAETHGEDLMNGHRWSWYGKTQFMRIEPWHQPFGIWRISKVS
>NZ_CP019952.1|WP_078478329.1|1784694_1788015_+|maltose-alpha-D-glucosyltransferase
MAKRTRPAAFIDDPLWYKDAVIYQLHIKSFFDANNDGIGDFAGLISKLDYIAELGVNTLWLLPFYPSPRRDDGYDIAEYKAVHPDYGTLADARRFIAEAHKRGLRVITELVINHTSDQHPWFQRARHAKRGSKARDFYVWSDDDHKYDGTRIIFLDTEKSNWTWDSVAGQYFWHRFYSHQPDLNFDNPQVLKAVIGVMRFWLDLGVDGLRLDAIPYLIERDGTNNENLPETHGVLKAIRAEIDANYPDRMLLAEANQWPEDTRPYFGEGDGDECHMAFHFPLMPRMYMALAMEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAEDRRARINLGIRRRLAPLLQRDRRRIELLTSLLLSMPGTPTLYYGDELGMGDNIYLGDRDGVRTPMQWSPDRNGGFSRADPQRLVLPPIMDPLYGYQTVNVEAQSHDPHSLLNWTRRLLAVRKQQKAFGRGTLRTLTPSNRRILAYIREFTGADGHTEVILCVANVSRAAQAAELDLSQYADKVPVEMIGGSAFPPIGQLPFLLTLPPYGFYWFVLAAHDRMPSWHNQPTEGLPELTTLVLRKRLEELLESPSRDALQSTILPQYLPKRRWFAGKEGPIDQVDLSYGVRMTTAGTPVLLSEIEVISDGVTSRYQLPFGLLPEEQISTALPQQLALSRVRRANEVGLITDAFVLEPFVRAVLKACQEGLRLSCGNDQGELHFNHTEQLAGLALGDDSPVRYLSAEQSNSSVVVGDSVVLKLIRRVNAGIHPELEMSAYLTAAGFANISPLLAWVSREDAQGAPHLLMIAQGYLSNQGDAWAWSQNTLERAIRDQMQPSSSEGEPHTDAVNELRDFASLLGQRLGEMHLMLAAPTDDEAFAPYPSTAEDSERWSAQISTELTHALDLLTQHRDKLDAESQALVDDLQQQRDGLAQRVAELAQQAQGGLLMRVHGDLHLGQVLVVQGDAYLIDFEGEPSRPLEERRAKHSPYKDVSGVLRSFDYAAAMILRSASTVDLSEPARQARQRVARQYLHQSRHAFIEAYGLATAAMPHAWEQAEGERAALELFCLEKAAYEITYEAENRPSWLAVPLHGLHGLISTWGESE
>NZ_CP019952.1|WP_058639574.1|1788011_1790222_+|1,4-alpha-glucan-branching-protein-GlgB
MNVSTRENGGLGQRDLDALARAEHADPFAVLGPHTDPAGGVTIRAYLPNALGARVLARDDQRVLADMQPGAIPGLFTARLNEALPYQLHINWAGGEQVTEDPYSFGPQLGDIDLHLFAEGNHRDLAGRFGAQPAQVDGVDGVCFSVWAPNARRVSVVGEFNNWDGRRHPMRLRHGAGVWELFIPRLGVGETYKFEVLGKDGILPLKADPLARATELPPSTASKVAGALAHEWRDQQWMDERAQRHAYGAPLSIYELHPGSWRCELDEAGEVGRFYNWRELAERLVPYVQELGFTHIELLPIMEHPFGGSWGYQPLSMFAPTSRYGTAEDFAAFIDACHQARIGVILDWVPAHFPTDEHGLARFDGTALYEYDNPFEGYHQDWNTLIYNLGRNEVRGFMMASALHWLKHFHIDGLRVDAVASMLYRDYSRKAGEWVPNRHGGRENLEAIDFIRHLNGVAAHEAPGALIIAEESTAWPGVSKPTEEGGLGFHYKWNMGWMHDSLSYIQNDPVHRAHHHNEMSFSLVYAYSEHFILPISHDEVVHGKRSLIDKMPGDRWQKFANLRAYLAFMWMHPGKKLLFMGCEFGQWREWNHDHQLDWYLLQYPEHQGVQRLVGDLNRLYRDVPALHEQDCKPEGFQWLIGDDAQNSVFAWLRWSSAGEPVLVVANFTPVVREGYRIGVPFGAQWQELLNSDAEAYAGSNVGNMGTVASQQTPCHGQPLSLALNLPPLAILVLKPV
>NZ_CP019952.1|WP_058639575.1|1790435_1792589_-|glycogen-debranching-protein-GlgX
MSPRTAKKTRSVAPSRIREGLPYPLGATWDGLGVNFAIFSANATKVELCVFDATGEKELERIELPEYTDEIYHGYLPDAHPGLIYGYRVHGPYEPENGHRFNPNKLLIDPYAKQLVGELKWSEALFGYTIGHPDGDLSFDERDSAPFVPKCKVIDPAFTWGRDNRVQTPWDKTVVYEAHTKGISKRHPAVPENLQGTFAGLANDELLKHIKDLGVSSIELLPIHAFVNDQHLLDKGLNNYWGYNTIAFFAPHPSYLASGKIAEFKEMVAHLHDAGLELILDVVYNHTAEGNEMGPTLSMRGIDNASYYRLMPDQKRYYINDSGTGNTLDLSHPCVLQLVTDSLRYWAGEMHVDGFRFDLATILGRYHDGYSERHSFLVACRQDPLLRQVKLIAEPWDCGPGGYQVGNFAPGWAEWNDRFRDTVRAFWKGDEGQLADFAARMTGSGDMFNNRGRRPYSSVNFITAHDGFTLRDLVSYNEKHNEDNDENNQDGTSNNLSWNCGAEGPTEDAEINALRMRQMRNFFATLLFAQGTPMIVAGDEFSRTQHGNNNAYCQDSEIGWVNWDLDEEGQALLAFVKRLTRLRQKYPVLRRSSFLVGDYNEAIGVKDVTWLAPDGNEMSVEQWEDPNGRCLGMLIDGRAQVSGIARPGSESTVLLIVNAHHDTVPFKLPSVPEGEHWSCVMDTDRPQLRKPEDLPFDSSFDLTGRSVALMVLQHSED
>NZ_CP019952.1|WP_058605048.1|1792716_1793010_-|DUF2934-domain-containing-protein
MSVDDKRIREFAYQIWESEGKPHGEEERHWDMARKLAEAEAKAPGAKAKAPAKPKAPAKPKAAAAPKPPADPKVAALPGVKPAASKKPRAPKKPTAS
>NZ_CP019952.1|WP_058639576.1|1793026_1795801_-|malto-oligosyltrehalose-synthase
MKPLTATLRLQFHSDFTLDHALPLVPYFAQLGISHLYASPILKARAGSRHGYDVVDPTQVNPELGGEAALERLVKALRQHGMGLIVDTVSNHMAVGGADNPWWQSLLAWGRRSPYAEFFDIQWHSTDPLLAGQLLLPFLGSDYGVALKEGQIPLEFDADQGVLQIAHYEHRFPICPVDYGWVLALSADPTLTSLAEQFTALGESATPLDDAAPLQAELARRVREGADLASALVAFDSRSEAGFKRLHLLLERQTYRLASWRTAADDINWRRFFDINELGGLRVERPVVFEATHAKLFELIERGLVDGLRIDHIDGLADPRGYCRKLRRRVDSLMASRPLDACVEHFPIYVEKILGVDEHLHRDWLTDGTTGYEFMNQVSLLQHDPAGEAPLTELWSTVSERPAFTEEVRLARHLVLNASLAGDCESVAQALLQVARNDLMTRDLSLGAIRRALQALVAHYPVYRTYFNACGRPAEDEAFFQQALADARQDLSEADWPLLEQLEKWLGGEGWRQLPPGRTRKQLRHACVRFQQLTAPSAAKAVEDTAFYRSARLLSRNDVGFEAERFSAPLEHFHNEAQRRLRDFPDNLLATATHDHKRGEDTRARLAVLSERGPWLASRMAHWRELAAPLHTPLEDGLAPSPGDEMLLLQTLLGTWPLDLAVDDAQGLKQYAERVGQWQQKALREAKLRSSWNAPNEAYEKGCARYLEGLLLEADALPLRTSIAEAAQLISCPGALNSLVQAFMRMTVPGVPDLYQGNEYWDFSLVDPDNRRPVDYPARRSTLAEAAPLDALLSHWHDGRVKQALVARVLDCRMANPELFRRGSYLPLTVKGRHADKVVAFARLGDSQRAVIVAPRLASGLLGAAQSPHVPPQNWEDTRVVLPFDFSPANSTGLFGGAVVSPVRELMVCAVLSDFPVNLLIEDN
>NZ_CP019952.1|WP_058639582.1|1795797_1797867_-|4-alpha-glucanotransferase
MSDSLLHRLAQRAGLARDWVDANNKPQQVTDEVLRKLLEALGHRASDEAQLQDSLSRLERSDDAQHVPPLLTADQGKPLDLSRYFPAQAGVRGQLEDSSSIDLQLDAQAHLPGDLPVGYHQLEVAQHRFTLAVAPSACPSLHDLVQAAPARCWGLSAQLYSLRRPGDGGYGDCMALEQLVRSAAERGADAVAISPIHALSAFDQQHYSPYSPSSRLLLNTLYASPAAILGERTVRLAIEACHLEQTLTSLEQEPLVDWPRAADARYKLLDALYQHFSQGDHPQRADFESYRQAAGEALEHHCRFEVLQAEAVDKGHGADWRNWPEAWRDPFGTEVRALAESYPARVEFHAFCQWLTERSLQRAQEAAKGSGMVVGLIADLAVGADGAGSQAWSRQDELLANLTVGAPPDILNRSGQDWGICGFSPEGLKRNGYRAFIEMLRANLAHAGGLRIDHVMGLQRLWLIPRGCKPNEGAYLYYPLEDMLRLLALEASRHGAIILGEDLGTVPDGLREALAQKNILGMRVLPFEQTSPGQFTPQLQWPDDALATTGTHDLATVAGWLKNRDVEWSRRLGLIDESTEQQWRDDRRKEHDGLRRTLETHYGPLKDDTAVIDAAIGYVGHTKAPLVLVPLEDLLGLEEQPNMPGTTEGHPNWRRRFTEAASHMLDDKDAARRLEVLAQAREQAWERDR
>NZ_CP019952.1|WP_027916213.1|1799620_1801180_-|glycogen-synthase-GlgA
MISAAVATQVATFTSEHREPLIPELAKTGKAPGAQRQNNPNKRKILFVTSEIADLVKTGGLGDVSAALPRALAHLHDVRVLIPGYPQVVESDNPIHIVGELGGHAALPPCKIGRMDLPDGLVIYVLICPELYQRPGTPYAAENGRDWPDNHIRFARLGLAAAEIAAGEGMIHWKPEMVHAHDWPAGLAPAYMHWRGLSTPTLFTIHNLAYQGVYSRGCSPELAIPDHAMQQEGMEFYGKLSFLKAGLAYSSHITTVSATYAQEITTPEFGCGLDGFLASKAQQGLLGGIPNGIDESWDAATDKHLQHNFSINDWEGKARNAQAVRELFQLDPSEGPLFAVVSRLVYQKGLDLTLGVAEYIVEQGGQIAIIGRGEPEEEQAMRELALRHPGRVGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARKTGGLADTIENGVTGFLFDESTVESYREALSRAFYIYQKKDLLNAMRCLSMTQPFNWCQAVEPYARLYEDLVKQAQLAHY
>NZ_CP019952.1|WP_058639578.1|1801842_1802826_+|decarboxylating-6-phosphogluconate-dehydrogenase
MQLGIVGLGRMGGNIARRLMLAGHHTVVHDRNAQAITALEGEGSVGAADLAALVEKLQAPRAVWVMLPAGAPTEQTIAQLADLLEPGDSIIDGGNTFYKDDMRRAAELAQRGLHYLDVGTSGGVWGLERGYCMMIGGEKDVFERLEPLFAALAPGVGDIPRTHGRTGEHQRAEHGYIHAGPPGAGHYVKMVHNGIEYGLMQAYAEGFDLLRSKGGAELPEDQRFDLNVAEIAEVWRRGSVVTSWLLDLTADALVADPQLAQFSGSVSDSGEGRWTIDAAVEQAVPVPVLSSALFARFRSRQQQGTYGDKILSAMRLGFGGHVEKKPE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP041194	Weissella cibaria strain CBA3612 plasmid pCBA3612-01, complete sequence	16755-16780	4	0.846
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP012874	Weissella cibaria strain CH2 plasmid pMKC01, complete sequence	28491-28516	4	0.846
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP035268	Weissella cibaria strain SRCM103448 plasmid unnamed1, complete sequence	23938-23963	4	0.846
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_KY454639	Klebsiella pneumoniae strain INF167 plasmid INF167_p0001, complete sequence	64180-64205	5	0.808
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP031790	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence	80833-80858	5	0.808
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP031793	Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence	71042-71067	5	0.808
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP015754	Klebsiella pneumoniae strain W14 plasmid unnamed1, complete sequence	82135-82160	5	0.808
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP026161	Klebsiella pneumoniae strain F93-1 plasmid pF93-1_1, complete sequence	136084-136109	5	0.808
NZ_CP019952_1	1.1\|1780364\|26\|NZ_CP019952\|CRISPRCasFinder	1780364-1780389	26	NZ_CP016160	Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed1, complete sequence	110023-110048	5	0.808

1. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP041194 (Weissella cibaria strain CBA3612 plasmid pCBA3612-01, complete sequence) position: , mismatch: 4, identity: 0.846

cacctgcttttttgtcaatttatccg	CRISPR spacer
tagctgcttttttgtcaatttattgg	Protospacer
.* ********************. *

2. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP012874 (Weissella cibaria strain CH2 plasmid pMKC01, complete sequence) position: , mismatch: 4, identity: 0.846

cacctgcttttttgtcaatttatccg	CRISPR spacer
tagctgcttttttgtcaatttattgg	Protospacer
.* ********************. *

3. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP035268 (Weissella cibaria strain SRCM103448 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cacctgcttttttgtcaatttatccg	CRISPR spacer
tagctgcttttttgtcaatttattgg	Protospacer
.* ********************. *

4. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_KY454639 (Klebsiella pneumoniae strain INF167 plasmid INF167_p0001, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

5. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP031790 (Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

6. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP031793 (Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

7. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP015754 (Klebsiella pneumoniae strain W14 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

8. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP026161 (Klebsiella pneumoniae strain F93-1 plasmid pF93-1_1, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

9. spacer 1.1|1780364|26|NZ_CP019952|CRISPRCasFinder matches to NZ_CP016160 (Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cacctgcttttttgtcaatttatccg	CRISPR spacer
cgcctgctttttggtcaatttattaa	Protospacer
*.********** **********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1858355 : 1863080

uncultured_Caudovirales_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078478352.1\|1858355_1859357_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.1e-153	79.6
WP_058637910.1\|1859353_1859689_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.9e-42	73.0
WP_078478353.1\|1859685_1859982_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.0e-27	61.6
WP_078478354.1\|1859981_1860341_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.8e-34	62.5
WP_058637907.1\|1860341_1860734_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.2e-53	81.4
WP_078478355.1\|1860802_1862182_-	purine permease	H9YQ34	environmental_Halophage	1.9e-28	51.8
WP_023534840.1\|1862408_1863080_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.8e-102	88.8

DBSCAN-SWA_2

1969645 : 2021780

uncultured_Caudovirales_phage(48.94%)

coat,tail,terminase,tRNA,head,integrase

attL 1977088:1977147|attR 2034004:2034068

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058637781.1\|1969645_1971568_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.2e-123	37.7
WP_058603482.1\|1971585_1972119_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	2.0e-13	38.4
WP_003250667.1\|1972181_1972376_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003250671.1\|1972403_1972760_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_058603341.1\|1972869_1973886_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_078478398.1\|1973919_1976301_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003250679.1\|1976305_1976608_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.0e-11	38.9
WP_003250681.1\|1976588_1976945_+	MerR family transcriptional regulator	NA	NA	NA	NA
1977088:1977147	attL	NA	NA	NA	NA
WP_078478399.1\|1977203_1978382_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	2.0e-159	70.1
WP_078479409.1\|1978691_1979039_-	hypothetical protein	NA	NA	NA	NA
WP_078478400.1\|1979124_1979316_-	hypothetical protein	NA	NA	NA	NA
WP_078478401.1\|1979362_1979626_-	hypothetical protein	NA	NA	NA	NA
WP_078478402.1\|1979622_1979916_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.7e-27	68.0
WP_078479410.1\|1979912_1980104_-	hypothetical protein	NA	NA	NA	NA
WP_153302494.1\|1980472_1980682_-	hypothetical protein	NA	NA	NA	NA
WP_078478404.1\|1980766_1981411_-	hypothetical protein	H2BDF1	Pseudomonas_virus	1.5e-18	51.6
WP_078478405.1\|1983076_1984192_+	hypothetical protein	NA	NA	NA	NA
WP_078478406.1\|1984188_1984722_-	hypothetical protein	J9Q748	Salmonella_phage	3.2e-19	32.6
WP_078478408.1\|1985111_1985624_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	2.7e-07	40.2
WP_078478410.1\|1985874_1986381_-	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	6.9e-08	28.7
WP_078478411.1\|1986377_1987205_-	hypothetical protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	1.1e-58	47.7
WP_078478412.1\|1987201_1988014_-	exodeoxyribonuclease VIII	A0A1P8DTH1	Proteus_phage	5.1e-85	56.7
WP_078478413.1\|1988330_1988525_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	1.2e-13	59.7
WP_078478414.1\|1988521_1988944_-	hypothetical protein	NA	NA	NA	NA
WP_153302495.1\|1989401_1989545_-	hypothetical protein	NA	NA	NA	NA
WP_078478416.1\|1990002_1990311_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.9e-29	66.0
WP_078478417.1\|1990358_1991267_-	hypothetical protein	NA	NA	NA	NA
WP_078479411.1\|1991329_1992169_-	S24 family peptidase	A0A2D1GNH0	Pseudomonas_phage	2.3e-88	80.4
WP_078478418.1\|1992282_1992519_+	hypothetical protein	NA	NA	NA	NA
WP_004573832.1\|1992549_1992738_+	hypothetical protein	B5WZX7	Pseudomonas_phage	1.7e-12	61.3
WP_078478419.1\|1992756_1992936_+	hypothetical protein	NA	NA	NA	NA
WP_078478420.1\|1993098_1993950_+	replication protein	W6MYB0	Pseudomonas_phage	9.2e-37	40.1
WP_078478421.1\|1993939_1994752_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	1.5e-132	88.3
WP_078478422.1\|1994744_1995215_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	6.4e-56	65.4
WP_078478423.1\|1995211_1995535_+	hypothetical protein	A0A2H4J249	uncultured_Caudovirales_phage	2.5e-11	43.8
WP_078478424.1\|1995525_1996122_+	ninG protein	H2BDI7	Pseudomonas_virus	5.2e-63	64.8
WP_078478425.1\|1996237_1996828_+	hypothetical protein	A0A059VF83	Pseudomonas_phage	2.4e-60	57.1
WP_078478426.1\|1997132_1997330_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.1e-09	55.6
WP_078478427.1\|1997326_1998496_+	hypothetical protein	NA	NA	NA	NA
WP_078478428.1\|1998835_1999162_+	MFS transporter	A0A088FVG2	Escherichia_phage	1.5e-24	54.6
WP_078478429.1\|1999158_1999470_+	hypothetical protein	A0A1W6JT10	Escherichia_phage	9.5e-08	39.2
WP_078478430.1\|1999565_2000036_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_078478431.1\|2000149_2000746_+	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	5.5e-89	78.3
WP_078478432.1\|2000777_2001254_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.9e-68	82.9
WP_078478433.1\|2001228_2002557_+\|terminase	terminase	A0A1B0VP58	Pseudomonas_phage	1.9e-238	90.9
WP_078478434.1\|2002556_2004026_+	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	5.1e-253	90.1
WP_078478435.1\|2003967_2005026_+\|head	phage head morphogenesis protein	A0A2H4J3G9	uncultured_Caudovirales_phage	1.5e-161	84.0
WP_078478436.1\|2005058_2005523_+	hypothetical protein	NA	NA	NA	NA
WP_078478437.1\|2005602_2006376_+	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	1.6e-133	97.3
WP_078478438.1\|2006379_2007357_+\|coat	phage coat protein	A0A2H4JIE6	uncultured_Caudovirales_phage	5.4e-182	97.8
WP_078478439.1\|2007404_2007839_+	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	1.6e-74	94.4
WP_078478440.1\|2007842_2008220_+	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	9.9e-52	87.9
WP_078478441.1\|2008223_2008616_+	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	5.8e-63	93.1
WP_078478442.1\|2008617_2009292_+	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	1.3e-113	94.2
WP_078478443.1\|2009288_2009717_+	hypothetical protein	A0A2H4J5P1	uncultured_Caudovirales_phage	5.6e-59	81.8
WP_078478444.1\|2009755_2010415_+\|tail	phage tail protein	A0A0S2SYG8	Pseudomonas_phage	1.8e-85	72.5
WP_078478445.1\|2010424_2010808_+	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	2.8e-41	62.2
WP_078479412.1\|2010870_2011122_+	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	4.6e-29	75.3
WP_078478446.1\|2011125_2014581_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.9e-213	48.7
WP_027916409.1\|2014580_2014919_+\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	7.6e-43	70.5
WP_078478447.1\|2014928_2015678_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	7.6e-120	77.1
WP_078478448.1\|2015680_2016457_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	6.0e-120	77.2
WP_153302496.1\|2016570_2016738_+	hypothetical protein	NA	NA	NA	NA
WP_153302497.1\|2016734_2017193_+	hypothetical protein	NA	NA	NA	NA
WP_078478451.1\|2017585_2017915_-	hypothetical protein	NA	NA	NA	NA
WP_078478452.1\|2017955_2018393_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_153302498.1\|2018518_2018692_+	Arc family DNA-binding protein	A0A2H4J2A5	uncultured_Caudovirales_phage	8.1e-09	61.4
WP_078479413.1\|2018763_2019693_+	hypothetical protein	A0A0S2SY56	Pseudomonas_phage	1.9e-59	59.5
WP_078478453.1\|2019689_2020187_+	DNA-binding protein	A0A0H5ARR4	Pseudomonas_phage	1.1e-45	44.3
WP_078478455.1\|2021174_2021780_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	3.5e-67	71.4
2034004:2034068	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2265801 : 2271340

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023533837.1\|2265801_2267388_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.9e-60	28.4
WP_058638270.1\|2268082_2268412_+	DUF2514 family protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	8.5e-07	39.4
WP_058638269.1\|2268475_2269177_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-105	79.7
WP_058638268.1\|2269189_2269660_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.1e-52	66.7
WP_058638267.1\|2269687_2270971_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.1e-173	74.2
WP_058638266.1\|2270992_2271340_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	1.5e-33	61.1

DBSCAN-SWA_4

3696233 : 3704012

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023533446.1\|3696233_3697043_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.0e-24	32.1
WP_058637505.1\|3697290_3698265_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.0e-35	33.6
WP_078479049.1\|3698276_3698801_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	4.1e-27	47.4
WP_078479050.1\|3698809_3699382_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_078479051.1\|3699368_3699893_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_058604413.1\|3699893_3700619_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-22	26.0
WP_058637503.1\|3700794_3702288_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_058604411.1\|3702369_3702678_+	ribosome-associated translation inhibitor RaiA	A0A0M7QCF2	Escherichia_phage	2.6e-05	35.2
WP_027913742.1\|3702690_3703155_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_058637502.1\|3703157_3704012_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.5e-07	31.0

DBSCAN-SWA_5

4311789 : 4361214

Bacteriophage(57.14%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058602983.1\|4311789_4312290_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_058639069.1\|4312472_4313354_+	acyltransferase	NA	NA	NA	NA
WP_058639068.1\|4313571_4314924_+	amino acid permease	NA	NA	NA	NA
WP_058639067.1\|4315233_4315866_+	hypothetical protein	A0A1W5K0N1	Bacteriophage	1.7e-16	62.9
WP_078479253.1\|4316615_4316855_-\|transposase	transposase	NA	NA	NA	NA
WP_078479254.1\|4319112_4319892_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_078479255.1\|4320033_4320831_+	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	5.1e-21	50.5
WP_153302522.1\|4320803_4321115_+	hypothetical protein	NA	NA	NA	NA
WP_023532721.1\|4322381_4323581_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	28.5
WP_153302523.1\|4324014_4324980_+	hypothetical protein	B6SD27	Bacteriophage	9.8e-19	37.9
WP_058638083.1\|4325043_4325901_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_078479257.1\|4325912_4326545_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_058638085.1\|4326700_4329718_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_027913567.1\|4329714_4330050_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_058602973.1\|4330064_4331315_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_078479258.1\|4331330_4332584_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.7e-101	52.7
WP_078479259.1\|4332966_4334007_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_058638087.1\|4335167_4335482_-	cell division protein ZapA	NA	NA	NA	NA
WP_058638088.1\|4335478_4335709_-	hypothetical protein	NA	NA	NA	NA
WP_058638089.1\|4335889_4336990_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_058638090.1\|4337284_4338577_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_078479462.1\|4338649_4339477_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	2.5e-15	36.3
WP_058638091.1\|4339654_4340425_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_058602964.1\|4340435_4341668_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_078479262.1\|4341667_4343623_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_027913555.1\|4343829_4345890_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_013970507.1\|4345905_4346436_-	hypothetical protein	NA	NA	NA	NA
WP_023532386.1\|4346513_4347491_-	membrane dipeptidase	NA	NA	NA	NA
WP_078479263.1\|4347776_4348178_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_078479264.1\|4348295_4349012_+	hypothetical protein	NA	NA	NA	NA
WP_058638096.1\|4349070_4349622_+	hypothetical protein	NA	NA	NA	NA
WP_058638097.1\|4349618_4350575_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_058602960.1\|4350717_4351662_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058638099.1\|4351781_4352666_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_078479265.1\|4352684_4353650_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_058638101.1\|4353660_4354137_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_023532364.1\|4354437_4354695_+	hypothetical protein	NA	NA	NA	NA
WP_023532694.1\|4354789_4355896_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_078479266.1\|4356343_4357720_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_023532510.1\|4358160_4359108_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058638103.1\|4359193_4360039_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_023532472.1\|4360035_4361214_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-25	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage