CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016372	Elizabethkingia anophelis strain JM-87 chromosome, complete genome	1 crisprs	RT,c2c10_CAS-V-U3,WYL,cas3,DEDDh,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016372_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016372_1

3880039-3880179

Orphan

Consensus_repeat	Method
TAATCGTATAATCCTATAAACGAATTTACTATTGCACAAATTCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016372_1

>merge|NZ_CP016372|1|3880039-3880179|CRISPRCasFinder
TAATCGTCTAATCGTATAATCCTATAAACGAATTTACTATTGCACAAATTCACCCATTCACACATTAATTAATCTTTGTAAAACTGTTTAATCCTGTAATCGTATAATCCTATAAACGAATTTACTATTGTACAAATTCAC

>NZ_CP016372|1|1|3880039-3880179|CRISPRCasFinder
TAATCGTCTAATCGTATAATCCTATAAACGAATTTACTATTGCAC	AAATTCACCCATTCACACATTAATTAATCTTTGTAAAACTGTTTAATCCTG
TAATCGTATAATCCTATAAACGAATTTACTATTGTACAAATTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016372.1\|WP_078407891.1\|3879488_3879995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016372.1\|WP_021346759.1\|3867490_3868381_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226304
NZ_CP016372.1\|WP_078407890.1\|3877390_3878284_+\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|379138
NZ_CP016372.1\|WP_021346742.1\|3887261_3887828_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP016372.1\|WP_021346756.1\|3870234_3870780_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NZ_CP016372.1\|WP_078407892.1\|3885527_3886292_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NZ_CP016372.1\|WP_034848401.1\|3868392_3869289_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP016372.1\|WP_021346757.1\|3869477_3870023_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NZ_CP016372.1\|WP_021346740.1\|3889406_3890918_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP016372.1\|WP_021346748.1\|3880362_3883137_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP016372.1\|WP_021346752.1\|3872255_3873356_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277368
NZ_CP016372.1\|WP_021346743.1\|3886392_3887259_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP016372.1\|WP_021346747.1\|3883165_3884005_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP016372.1\|WP_031257269.1\|3884939_3885521_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP016372.1\|WP_021346755.1\|3871042_3871282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016372.1\|WP_021346751.1\|3873447_3876783_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350770
NZ_CP016372.1\|WP_021346749.1\|3878286_3879330_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP016372.1\|WP_009090923.1\|3891079_3891445_+\|DUF2845-domain-containing-protein	unknown	unknown	gnl\|CDD\|371338
NZ_CP016372.1\|WP_021346746.1\|3884303_3884876_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP016372.1\|WP_021346741.1\|3887884_3888463_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158

Protein	Function_ID	Function_description	E-value
NZ_CP016372.1\|WP_021346759.1\|3867490_3868381_+\|membrane-protein	gnl\|CDD\|226304	COG3781, COG3781, Predicted membrane protein [Function unknown].	1.9043e-48
NZ_CP016372.1\|WP_078407890.1\|3877390_3878284_+\|class-A-beta-lactamase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	6.13592e-29
NZ_CP016372.1\|WP_021346742.1\|3887261_3887828_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.63298e-20
NZ_CP016372.1\|WP_021346756.1\|3870234_3870780_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	0.000221913
NZ_CP016372.1\|WP_078407892.1\|3885527_3886292_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	4.30227e-98
NZ_CP016372.1\|WP_034848401.1\|3868392_3869289_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	7.50345e-105
NZ_CP016372.1\|WP_021346746.1\|3884303_3884876_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.81394e-14
NZ_CP016372.1\|WP_021346740.1\|3889406_3890918_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.3726e-36
NZ_CP016372.1\|WP_021346748.1\|3880362_3883137_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP016372.1\|WP_021346752.1\|3872255_3873356_+\|metallophosphoesterase	gnl\|CDD\|277368	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.72208e-49
NZ_CP016372.1\|WP_021346743.1\|3886392_3887259_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	2.93171e-38
NZ_CP016372.1\|WP_021346747.1\|3883165_3884005_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	8.35194e-133
NZ_CP016372.1\|WP_031257269.1\|3884939_3885521_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.07175e-61
NZ_CP016372.1\|WP_021346751.1\|3873447_3876783_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.7621e-100
NZ_CP016372.1\|WP_021346749.1\|3878286_3879330_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.38702e-52
NZ_CP016372.1\|WP_009090923.1\|3891079_3891445_+\|DUF2845-domain-containing-protein	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	0.00115877
NZ_CP016372.1\|WP_021346757.1\|3869477_3870023_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	0.000491079
NZ_CP016372.1\|WP_021346741.1\|3887884_3888463_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	1.07112e-38

>NZ_CP016372.1|WP_078407891.1|3879488_3879995_+|hypothetical-protein
MTNKDLFRVLIKIVGLYFFIQTLFSFLPSQISIAFLNSDSLETAGAILYTTLIIIICFGILYFLIRNPDKIIDLFKLDKNFDNNSINIQNLSSINLITTGLFIIGGYLVISNITRFIASAYYKIKLDHSSFPLPDMNNSFTIISSALNVILGFILIIYRKNIAAYFEK
>NZ_CP016372.1|WP_021346749.1|3878286_3879330_+|serine-hydrolase
MKLKVYFLTLLLAGCYAVNAQKNKDYKSEIDSIVIATQPIEFNGVVMIDQNGKLKYSIARGFKDFEKKIPLNTMIDQYEIMSNSKQVTAVLILQQVDKGTIDLQSPIRKYLPELTQSWADNVTVHQLLNHTHGITDTEKPLAFKPGNQFKYGNLSYIMLGKILENKTGQTYKQLAEDLFRKLKMNNTYCYDQNNKHNLVSAYMNKDNNFVKTKGSFLNDDILPAAGIISTPHDLALWNDALYKGRLLKPQTLKQMLTPSTSSQHQVFGEKEMGFGYNVRIIDEAGLHYYGVTGLGDGFTCLNLYFPDTDVSLIILENQMPENSQFWSYKEASIKNAFLKSSLVRKHK
>NZ_CP016372.1|WP_078407890.1|3877390_3878284_+|class-A-beta-lactamase
MAKKAILGIMALLMSLPFFSQVHENTVLKKTLESIISGKRATVGISIMGPDTKEVTRINGDQMLPMLSTVKFPLALTVFHEVEKGKLSMDQKLFIKKEELLEDTWSPFKEKYPQGNITITLEEALKWTVSYSDNNLTDILLRLVGGPETVQEFIDSSSFIIKNDEEGMHKDWDSQFINKITPNYATLLLQEFSNGKILNKAHTQWLYNAMLNNVTGKKRLKGNLPAGVKIAHRTGTSFTNKEGMTGAINDYGIIELPGKKKIYIAVFVNNTYESFDDSEKIISDIGRATWNYYTHKK
>NZ_CP016372.1|WP_021346751.1|3873447_3876783_+|DEAD/DEAH-box-helicase
MELPKEYILPDFNIRTLHIYDLLKHTANADFIAVKEFQDIYPVALELNAGVFTKSSSLSDFPRVAVSQVGANLVTSCSCNSTEDKLCIHQAEIIHCLLEEKDYRIFFDAYLRHKTLLPYAKSYGLEEEDNLDIYFRLDYLNGRLQVSPKIKELLQVDEHILKRDLLPRRTSIIKELATRDTNKKQILVIGKHRYYNQLNFQLMEADTTQTGKLKNPVNSIDVMKLLWKAEQASEIKFYTAITSFNNQYGETDPAETEALKHIVQNPLNLEVYFHDRAIAESISAKSLVPVNLNTLQAEIQLHVFRKKPFYEITGDLLFRDTTLPFSQVVIRNEYFVYYRNTYYLITDPDMLRVIQFFKSNNEILLVHSSRYEVFMQSILTQLEQRVQINYSYIRQATPTEITDKDYTTEKLIYLHQEGNYISIIPVMKYGNVEIPVYSRKQLLDTDQNGNEFKIERDHNAEIRLTRVVMEQHPDFREQIEEQEYFYLHKDKFLDDEWFLNAFETWRNEDINILGFNNIKNNKLNAHRAKITIEVTSGIDWFNAQLKVSFGHKKATLKQVHKTIRNKSKFVQLDDGTLGILPEEWIHKIARYFQAGDIDEELLKIPKISYTEIQDLFEKEVLSNEVQAEIASYTHNFSVNAEIPEVAVPAALNAELRTYQQEGLNWLNFLDSHNFGGCLADDMGLGKTIQIIAFILSQREKHGHTTNLVVLPTSLLFNWQEELAKFAPSVKVLTHYGADRQKSTADFQKYEVVLTTYGMLLSDITFLKKFRFNYIFLDESQTIKNPNSERYKAARLLQSRNRIALTGTPVENNTFDLYGQLSFACPGLLGSKQYFKDIYAIPIDKFEYSKRATELQKKIKPFILRRTKKQVATELPEKTEMLIYCEMNTEQRRIYDLYEKEVRDFISATDEDEIHNKSMHVLTGLTRLRQICNSPVLLKDGHSGDHAVKIEILTEQIENKSREHKILVFSQFVEMLDLIKDKLDEKNIRYEYLTGQTRNRGDKVQHFQNNEEVRVFLISLKAGGTGLNLTEADYVYLVDPWWNPAVENQAIDRSYRIGQTKNVVAVRMICSGTIEEKMMNLQKKKKKLAQDLITTETSFFSSLSKDDLLSIL
>NZ_CP016372.1|WP_021346752.1|3872255_3873356_+|metallophosphoesterase
MFSPIKSVLLLLFSLSLCSVQGQEKRPVNSSDGPYVTYKGDSILVQQIEAGNQKKEHYLQKNKKAIKLRISFSDAPEKNFEVKLKQNISNEPSVTAQPKKMLVLSDIEGEFDALRELLLANKVINKKYEWIYGDGHLVICGDLFDRGTEVPATMWLLYKLEEEAKLKGGYVHTILGNHDIMNLAGNFKYVDQKYFLNAEKLNLSYADLYSEKTELGRWLRSKNLIEKIGDNLCMHGGISPDVNSLGLTIEKLNEIARPYIGWKNLKNTVTDATILKIFNSTDGIFWYRGYFKEPVVDEKVVDQTLSLFQVKRIIVGHTIVKTNIGFYYNKKVLGVDVNQHKGDHQAALYENNKWYKVGITGDKILL
>NZ_CP016372.1|WP_021346755.1|3871042_3871282_+|hypothetical-protein
MKKEKSIENLRKKLQLGGFTKTFGYKIIGGNRTMTIPEVVITVPKPQSISGGTEVDDDNDGDKPEDLTGNPPVNTGPWY
>NZ_CP016372.1|WP_021346756.1|3870234_3870780_-|YcxB-family-protein
MELNYKLEEQDYLQLYMYAASKNQVIKQQRQRVLWLLIIIYIVCSLLMFSMSMVSLFVFIAAAITVTLIYIYYYERKRYEKFYLKNIRTNLKNRIGVNYKTVFGPHDIILIEPNAEAKFKYPNIELVEEINTYYFFKMKTGERFIVPKSAIQNSQEFNQIISRLSKDYNIQLYQELNWKWK
>NZ_CP016372.1|WP_021346757.1|3869477_3870023_-|YcxB-family-protein
MELNYKVGEQDYLQVYMYAATKNPIIKKQRKNGLIRMIVFSIIGLCLMYSTSLISLLVYFLFVVFIFCFYFFYYERKYYETFYLKNIRTNLKNKIGLNSKVVFGLHDIILTEPNTESKFNYSNIELIEEIKDYYYLKIITGERFILPKNAIQNPKEFNEVIIRLTKDNHIPLQQELNWKWR
>NZ_CP016372.1|WP_034848401.1|3868392_3869289_+|cation-transporter
MSETNIQTASASSKHKKNLLIVLSFSGLYLIAEVIGGIITNSLALLADAAHMLTDVVGLLLAYIAIRIGERKATSSKTFGYYRTEILAAVINAVVLLGISVYVLYEAYQRFLNPPEVQSKAMLIVAGIGLLVNIAGIMILRKSSGDSLNMKGAYFEVLSDMLTSVGVMIAGVVMLTTGWYYADPLISAGIGLLIFPRTWRLLMEAIHVLLEGTPKDVDINELRSTMEKVPGVKSLHDLHVWSLTSGINAMSAHVVSDQTIPHNQMLRILTDQATSNFKISHTTFQIEDEGYVESEMHD
>NZ_CP016372.1|WP_021346759.1|3867490_3868381_+|membrane-protein
MLLKKKISIWYFINLIKSQLLLISMFAVAIGILDLLPAFQKISLPLTIPALVGTAVSLLLAFRISQSYERWWEARTVWGAIVNDSRSLIRQITQALPSGSEAIIREFAQRQIIWNYALGESLRKLPFSDRVQDYLIDHRIEAANIPNALLDEHSLQLKQLADKGLISEFRLIQLNETLARLCDSMGKCERIKNTVFPRSYSILVHSLIYVFAAILPFGFDDSQLSLLIIEIGITILIPTLFIAIEKTAIIMQDPFENTPVDTPMTSLAQTIEINLREMTGEQNVPQKKRNPLYYEM
>NZ_CP016372.1|WP_021346748.1|3880362_3883137_+|aconitate-hydratase-AcnA
MNTQKSKSVQELSVNGKNYHYSSLKNLSEKGVDHLPFSIRILLENVLRNYDGFSITDEHVDTLLQWTPAPVDKDIPFKPARILMQDFTGVPAVVDMASLRAEFVRQGKDGQKINPAIPVDLVIDHSVQVDYFGTDYSYDKNVTLEFDRNKERYELLKWAQKGLNNFTVVPPGMGICHQVNLEYLAKGVIDRDGWLFPDTLVGTDSHTPMVNGIGVIAWGVGGIEAEAAMLGQPIFFTCPEVVGLKLTGKIPSHCTATDMVLSITRILRDKGVVGKFVEVFGDGLDNLTVTDRATISNMSPEFGCTVTYFPIDDRTLEYMHATNRSPEQIKIVEEYCKENLLWRTGNEDILYSSVVELDLNTLEPTVSGPKRPQDKILVKDLSHKFTEILKDEHHRDYEPISKRTEYAWLSDGGSGTEFTFGKVPIEGPSHSEVIQDTLHTVRIKQNNSEFVLSDGSIVIAAITSCTNTSNPAVMVGAGLLARNAIEKGLRTKPWVKTSLAPGSKVVTKYLERSGLNTDLEALRFHTVGYGCTSCIGNSGPLPPAIATAVDKGELVVASVLSGNRNFEARVHPQVKMNFLMSPMLVVAYALTGHVDIDLTTEPLQYDPNGEPVYLKDIWPSREEIQKTINECLKQGDFEEVYDVIFDGSEDWQNLEVNLDQNFEWDQNSTYIKEAPFFENISADPDPVTDIKDARVLLYLGDSVTTDHISPAGSFKEDSAAGAYLKNNNVNKEDFNSYGSRRGNHEVMMRGTFANVRIKNKIAGKEGGFSRYFPTNEVKTVFDTAMAYEKDHTPLIILAGKEYGSGSSRDWAAKGTFLLGVRAVIAESFERIHRSNLVGMGVAPLVFTDGQNAESLGLDGTETYSISGLAENLTPHKILEVKAVHPSGKETNFKVKARLDSAIEIEYYRHQGILQYVLREYLKNN
>NZ_CP016372.1|WP_021346747.1|3883165_3884005_+|aldo/keto-reductase
MKDFMLNNGLSIPEIGFGTWQIPEGDVAKNAVMTALEDGYRHIDTAKIYENEKSVGNAIKASGISREEIFLTTKVWNSDRGYHETMAAFEKSLELLQTDYVDLYLIHWPAIPSQFDNWKSLNAETWRALEDLYTSGRAKAIGVCNFLVHHLEALKETSKINPMVNQIEYHPGYLQSDVVNYCKNNEILVEAWSPIGSGRLLDNELLKDIAAKYQVSVAQLCLKFCLQNDVLPLPKSVTPANIKSNLDVDHFSISGEDLKAIASMEESGFSGLNPDHVPF
>NZ_CP016372.1|WP_021346746.1|3884303_3884876_+|Crp/Fnr-family-transcriptional-regulator
MGFLKEYYEQIVELQESEWDFIASHFERKVVTKNEIITQQGETENYLSFIESGIVRFYIPEEEEKNELTFNFSFDKELTCAYDSFLTRTPSQYEVQALTKTIIWQISYHNLQLVYHETKVGNYIGRLASEKLFLTKSKRELSLLKYNIKERYLNLFKEEPDVLKYIPLKYIASYIGTTPQGLSRIRRQIV
>NZ_CP016372.1|WP_031257269.1|3884939_3885521_+|peptide-deformylase
MILPIIAYGHNILKQKCSPVAENPDLHQLIKDMWETMQNANGCGLAAPQIGQTKQLFIVDSTSVYQLMNTEDREYYFEPEDHGMNETFINARITDYSDELWDDYEGCLSIPGLSQKVRRPWSINIEYLNADLQLQQRCFSGTTARAIQHEYDHTQGILYLDHLKPLTRKLMETKLRKIKNGQTEINYPVKYLK
>NZ_CP016372.1|WP_078407892.1|3885527_3886292_+|type-I-methionyl-aminopeptidase
MSITNENELTGMQQVSEAVAYTLKKMQAYARVGMSTKELDNYGANILESFGAKSAPLLTYNFPGYTCISVGHEFCHGIPSENRVLQEGDLINIDVSAELNGYWADNGASFVIGIDLHQHQKLVDASKDILNKAISRIKGGVKISDIGYLMETEAKKRGYRVIKNLAGHGVGKSLHEQPDEILNYRNKNDQRRFRKNTVVAIETFISTTSTYAEEQNDGWTMTGNKGGYMAQHEHTILITDTKPVVLTRMNGIPY
>NZ_CP016372.1|WP_021346743.1|3886392_3887259_+|alpha/beta-hydrolase
MTLTRCKALFILVALTIAFPLFSQNNTKPLVFGNSEVFHSDILKEDRNINIYLPEEFNPANATKYPVIYILDGGVEEDFFHIAGIVRYNTQPWVERFPRSIVVGIENTNRRRDFTYAVPDLNFLEKEGFKKESFPQYGGSEKYISFLKNELQPYIEKKYKANSNRTIIGESLAGLMSTEILLKEPEMFNQYIIISPSMWWGGEKLLKEADSLLKARLKTTKNVYIGAPNKEEDVRMYNEAETLYKILKSNKNIKVSFDYLPDELHSTAIHQGVYNGFKKLYPKSAYSK
>NZ_CP016372.1|WP_021346742.1|3887261_3887828_+|Crp/Fnr-family-transcriptional-regulator
MITAYFNSFGIFSAEEIASTVQLFESRLLNKGDFFVREHEKNSEVAFIQSGIFRSFYTSADGNDTTYCFRFPQDMLAAYSSFITGNPSTESMQAITPANLLVIQKTTIDELEAQNPKWTMFLKHIAEQQYLELENRVFQLQKETALQRYTSLLNNHPEFVQEIPLQYLASYLGITQRHLSRIRKQISF
>NZ_CP016372.1|WP_021346741.1|3887884_3888463_+|NAD(P)H-dependent-oxidoreductase
MKRIAIINGHPYAASFNAGLAKAYKEGALQSGADIQEINIADLDFNPNLENGYSKRTELEPDLLKAWKIIQWAEHLVWIHPVWWGGLPAITKGFIDRLFLPGMAYKYRENSILWDKLLKGKTARIITTLDQPGWYYRLMYGRPSVNQLRKSTLQFCGISPVKVTYIGIIRNSPEASRKKWLQQVKRLGLELK
>NZ_CP016372.1|WP_021346740.1|3889406_3890918_+|acyl-CoA/acyl-ACP-dehydrogenase
MNPSATALTGIPFSEFLTHFKDSISQLFKKDCINQLSLSRGLPPHVWKTIMNLKPLSVAVPEEFGGRGTKVKECLGILSAASYESLPLSLTFGINIALFLEPLAKYGNALAKADIFKHFLDYGAMGGLMITEPDYGSDALNMKTQNKLEGEKYHIKGTKHWQGLTGMADYWLVTSRNMNSEGALARDVDFFIANTHECDQNIEVVEYYDNPGLYMIPYGLNKIDIKVPQQNKLIPESTGLKMMLDILHRSRLQFPGMGMGFLKRMMEDASKHCQERQVGAGNLFSLDQVQFQLSKMQSFFTLCSAMCAKSVKISGIDHDVSGSGIHANSMKALVTDMMQESAQLYVQLSGAKGYRMSHIGGRGIMDSRPFQIFEGSNEMLYTQIAEGILKDMKKKKTENLAQYLDINETTKNAATVYSKDLDLNVTAPISQRKMIDLGKIVARVIIVNDLLELNDSGFSQELTDNCIQMVRQEIRNLISSMQHHENISALEDTSNKSDWMLFS
>NZ_CP016372.1|WP_009090923.1|3891079_3891445_+|DUF2845-domain-containing-protein
MRKKITGSMLLILLCLLISSCATTSKFSSESLNIGMTKEEVIAKFGKPYKSAFSQDKETGVIEETLFYREFLYISGNSNITNILSFKAGKLTSLKQGQESDSATRTTIINTPPSTIVQTSN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

85853 : 99266

Acinetobacter_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078406440.1\|85853_86645_-	NAD(+) synthase	M1IPF8	Pelagibacter_phage	2.1e-59	50.6
WP_078406441.1\|86652_87156_-	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	4.0e-16	37.2
WP_024565128.1\|87362_87689_+	gliding motility protein GldC	NA	NA	NA	NA
WP_047034593.1\|87707_88247_+	hypothetical protein	NA	NA	NA	NA
WP_049037881.1\|88260_89409_+	cystathionine gamma-synthase	A0A0B5JD48	Pandoravirus	8.9e-27	33.3
WP_021346461.1\|89480_90029_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.2e-07	29.9
WP_078396412.1\|90043_91468_+	HD domain-containing protein	H7BUW3	unidentified_phage	2.2e-27	27.2
WP_021346460.1\|91568_92291_+	DUF2071 domain-containing protein	NA	NA	NA	NA
WP_021346459.1\|92351_95114_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	4.8e-10	34.8
WP_078406442.1\|95347_95881_-	thioredoxin family protein	NA	NA	NA	NA
WP_009085414.1\|95913_97428_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.8e-55	32.2
WP_078406443.1\|97556_99266_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.6e-48	30.3

DBSCAN-SWA_2

1467545 : 1473972

Streptomyces_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078406920.1\|1467545_1468229_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	4.3e-21	47.0
WP_078406921.1\|1468428_1469436_+\|protease	membrane protease subunit, stomatin/prohibitin	NA	NA	NA	NA
WP_078406922.1\|1469443_1470352_+	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_009090007.1\|1470357_1470780_+	hypothetical protein	NA	NA	NA	NA
WP_078406923.1\|1470766_1471240_+	macro domain-containing protein	A0A2L1IVW3	Streptomyces_phage	1.6e-30	46.5
WP_024567432.1\|1471252_1472071_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	5.9e-49	40.9
WP_078406924.1\|1472070_1472580_+	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	1.4e-29	44.3
WP_009089995.1\|1472697_1473240_+	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	1.8e-46	52.2
WP_078406925.1\|1473240_1473972_+	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	7.9e-45	38.0

DBSCAN-SWA_3

1672582 : 1680918

Paramecium_bursaria_Chlorella_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078395808.1\|1672582_1673209_+	type B chloramphenicol O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	1.1e-23	43.1
WP_078406967.1\|1673377_1673887_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_009086881.1\|1673888_1674818_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.1e-38	32.0
WP_009086883.1\|1674840_1675281_-	dCMP deaminase family protein	H6WFU3	Cyanophage	1.8e-28	46.4
WP_021347391.1\|1675280_1676039_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_049037642.1\|1676166_1677660_-	catalase	A0A2K9L0T1	Tupanvirus	1.8e-96	45.5
WP_009086889.1\|1677758_1678712_+	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_078406968.1\|1678914_1680195_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.0e-111	51.3
WP_009086893.1\|1680321_1680918_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.6e-56	53.2

DBSCAN-SWA_4

2244289 : 2253555

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078395427.1\|2244289_2244733_+	adenylyltransferase/cytidyltransferase family protein	A0A218MN49	uncultured_virus	3.9e-39	54.7
WP_078395425.1\|2244735_2245281_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-41	49.2
WP_078395423.1\|2245288_2246368_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.7e-89	49.6
WP_009087044.1\|2246407_2247271_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	3.2e-98	61.7
WP_009087046.1\|2247414_2248143_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-20	27.4
WP_164504605.1\|2248173_2249979_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-37	26.9
WP_024565925.1\|2250043_2250619_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_021348171.1\|2250672_2251284_+	thiamine diphosphokinase	NA	NA	NA	NA
WP_009087055.1\|2251470_2252862_+	decarboxylase	NA	NA	NA	NA
WP_078395421.1\|2252892_2253555_-	HAD family phosphatase	A7J6N1	Paramecium_bursaria_Chlorella_virus	2.3e-11	28.3

DBSCAN-SWA_5

2419467 : 2454781

Bacillus_phage(33.33%)

transposase,tRNA,integrase

attL 2449087:2449104|attR 2455646:2455663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024566171.1\|2419467_2421138_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	1.5e-171	56.9
WP_078407143.1\|2421446_2423588_+	TonB-dependent receptor	NA	NA	NA	NA
WP_153246871.1\|2423672_2423831_+	hypothetical protein	NA	NA	NA	NA
WP_021348295.1\|2423841_2424006_+	hypothetical protein	NA	NA	NA	NA
WP_078407144.1\|2424027_2424264_+	hypothetical protein	NA	NA	NA	NA
WP_021348296.1\|2424308_2424458_+	hypothetical protein	NA	NA	NA	NA
WP_078407145.1\|2424506_2425511_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_009089628.1\|2425597_2426620_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.4e-68	43.7
WP_047034171.1\|2426771_2428010_+	aspartate kinase	NA	NA	NA	NA
WP_024567849.1\|2428016_2429861_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_078407146.1\|2430683_2431097_+	hypothetical protein	NA	NA	NA	NA
WP_078407147.1\|2431168_2432356_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.4e-129	62.0
WP_078407148.1\|2433165_2434143_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_078407149.1\|2434440_2434638_+	hypothetical protein	NA	NA	NA	NA
WP_078407150.1\|2434661_2436722_+	fimbrillin family protein	NA	NA	NA	NA
WP_078407151.1\|2437322_2438702_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.4e-17	25.1
WP_078407990.1\|2438704_2439379_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-25	31.5
WP_078407152.1\|2440619_2441189_-	DUF3575 domain-containing protein	NA	NA	NA	NA
WP_078407156.1\|2442796_2443051_+	hypothetical protein	NA	NA	NA	NA
WP_078407157.1\|2445170_2445731_+	hypothetical protein	NA	NA	NA	NA
WP_078407158.1\|2447041_2447560_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.2e-09	37.0
WP_078407159.1\|2447728_2448409_-\|transposase	transposase	NA	NA	NA	NA
WP_078407160.1\|2448529_2449522_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
2449087:2449104	attL	NA	NA	NA	NA
WP_078407161.1\|2449905_2450082_-\|transposase	transposase	NA	NA	NA	NA
WP_158667021.1\|2450097_2450538_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_078407163.1\|2450602_2450941_-\|transposase	transposase	NA	NA	NA	NA
WP_158667020.1\|2451362_2451536_+	hypothetical protein	NA	NA	NA	NA
WP_078407164.1\|2451558_2453295_+	hypothetical protein	NA	NA	NA	NA
WP_078407165.1\|2453902_2454781_+\|transposase	IS982 family transposase	NA	NA	NA	NA
2455646:2455663	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2658456 : 2666945

Elephant_endotheliotropic_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078407276.1\|2658456_2659395_-	glycosyl transferase	A0A2H5CAA3	Elephant_endotheliotropic_herpesvirus	7.1e-14	26.8
WP_078407998.1\|2659806_2660931_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.1e-61	37.9
WP_021348981.1\|2661016_2661211_+	cold shock domain-containing protein	A0A2H4N7Y6	Lake_Baikal_phage	7.4e-11	50.0
WP_021348980.1\|2661362_2661821_+	MaoC family dehydratase	NA	NA	NA	NA
WP_078407277.1\|2661872_2664929_-	DNA polymerase III subunit alpha	A0A0K1Y9G6	Streptomyces_phage	3.9e-77	32.3
WP_078407278.1\|2664955_2666098_-	DNA polymerase IV	A0A1W6JNT0	Morganella_phage	1.6e-15	22.4
WP_078407279.1\|2666159_2666945_+	LexA family transcriptional regulator	A0A0S2MVM8	Bacillus_phage	9.1e-07	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage