CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019786	Bartonella sp. Raccoon60, complete genome	1 crisprs	DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019786_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019786_1

1255085-1255202

Orphan

Consensus_repeat	Method
ATCCGAGCATTGCAACTAAAAAATCAAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019786_1

>merge|NZ_CP019786|1|1255085-1255202|CRISPRCasFinder
ATCCGAGCATTGCAACTAAAAAATCAAGCGGTCGCGCATTGCGAATAAGAATAAAGTGATCCAAGTATCACGACTAAGAACAAAGCCATCCGAGCATTGCGACTAAAAAATCAAGCGG

>NZ_CP019786|1|1|1255085-1255202|CRISPRCasFinder
ATCCGAGCATTGCAACTAAAAAATCAAGCGG	TCGCGCATTGCGAATAAGAATAAAGTGATCCAAGTATCACGACTAAGAACAAAGCC
ATCCGAGCATTGCGACTAAAAAATCAAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019786.1\|WP_035006614.1\|1255418_1255712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_035007454.1\|1237003_1237528_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|223750
NZ_CP019786.1\|WP_078698138.1\|1252874_1253090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375983
NZ_CP019786.1\|WP_035006609.1\|1259871_1260123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_078688867.1\|1262694_1263810_-\|tail-fiber-domain-containing-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_078698136.1\|1235167_1236796_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100087
NZ_CP019786.1\|WP_078688856.1\|1252323_1252878_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|139056
NZ_CP019786.1\|WP_078698137.1\|1237652_1239140_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP019786.1\|WP_035006606.1\|1261699_1262689_-\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NZ_CP019786.1\|WP_078688864.1\|1257791_1258709_+\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|377247
NZ_CP019786.1\|WP_035006607.1\|1260883_1261147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_078698134.1\|1239731_1240829_+\|DUF3792-family-protein	unknown	unknown	gnl\|CDD\|274969
NZ_CP019786.1\|WP_078688854.1\|1248121_1250110_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP019786.1\|WP_078688866.1\|1260119_1260782_-\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP019786.1\|WP_078698139.1\|1258952_1259402_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_078688859.1\|1254062_1255076_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226434
NZ_CP019786.1\|WP_078688861.1\|1255838_1256258_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019786.1\|WP_078688858.1\|1253252_1254047_+\|response-regulator	unknown	unknown	gnl\|CDD\|236402
NZ_CP019786.1\|WP_078688855.1\|1250688_1252107_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226434
NZ_CP019786.1\|WP_078689061.1\|1263715_1264291_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019786.1\|WP_035007454.1\|1237003_1237528_+\|peroxiredoxin	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.09908e-89
NZ_CP019786.1\|WP_078698138.1\|1252874_1253090_-\|hypothetical-protein	gnl\|CDD\|375983	pfam18557, NepR, Anti-sigma factor NepR. The general stress response sigma factor in alphaproteobacteria, sigma EcfG is inactivated by the anti-sigma factor NepR, which is itself regulated by the response regulator PhyR. NepR forms two helices that extend over the surface of the PhyR subdomains. Homology modeling and comparative analysis of NepR, PhyR and sigmaEcfG mutants indicate that NepR contacts both proteins with the same determinants, showing sigma factor mimicry at the atomic level. This entry represents NepR domains found in alphaproteobacteria.	1.13797e-06
NZ_CP019786.1\|WP_078698136.1\|1235167_1236796_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP019786.1\|WP_078688856.1\|1252323_1252878_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|139056	PRK12547, PRK12547, RNA polymerase sigma factor; Provisional.	2.20686e-110
NZ_CP019786.1\|WP_078698137.1\|1237652_1239140_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	5.76012e-148
NZ_CP019786.1\|WP_035006606.1\|1261699_1262689_-\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	7.44561e-17
NZ_CP019786.1\|WP_078688864.1\|1257791_1258709_+\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|377247	pfam04216, FdhE, Protein involved in formate dehydrogenase formation. The function of these proteins is unknown. They may possibly be involved in the formation of formate dehydrogenase.	2.00694e-41
NZ_CP019786.1\|WP_078698134.1\|1239731_1240829_+\|DUF3792-family-protein	gnl\|CDD\|274969	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family. Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. The function is unknown.	7.88711e-09
NZ_CP019786.1\|WP_078688854.1\|1248121_1250110_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	8.46234e-45
NZ_CP019786.1\|WP_078688866.1\|1260119_1260782_-\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	7.29541e-70
NZ_CP019786.1\|WP_078688859.1\|1254062_1255076_+\|histidine-kinase	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	3.97144e-41
NZ_CP019786.1\|WP_078688858.1\|1253252_1254047_+\|response-regulator	gnl\|CDD\|236402	PRK09191, PRK09191, two-component response regulator; Provisional.	3.47682e-161
NZ_CP019786.1\|WP_078688855.1\|1250688_1252107_-\|sensor-histidine-kinase	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	1.54457e-34

>NZ_CP019786.1|WP_078688859.1|1254062_1255076_+|histidine-kinase
MFVPPVSTTSIDRSHLSALLQAIRGADICVLYQTTNLIYLWAENLPQPLKKKWRVGCRDSDFFSVDLADNMETIKLQVLSTGKTQAIEARFEDMSKQTIWYKFSIDCHRNENGKIIGIITTGVDISGLRRREQVLKILLREVSHRSKNLLAIIQSIATQTARYTESLQTFLRKFQGRLHSLSHSQDLITDSDWRGAQFHELVKTQILNYLVKEKARFSIKGIDPYLFPNAVLHIGLAFHELIINSLSFGALSQDEGTVSITCTVSTIAQGKTQLFITWSEEFKKKIFLPAHKKACFGNTVLDKIVPIAVDGSAFLKLTDEGLIYCLSVSNNYFDILS
>NZ_CP019786.1|WP_078688858.1|1253252_1254047_+|response-regulator
MSLSQRIAPHLPYLRRFARSITGNQTSGDAYVAAMLEALIVDFSIFPQTSSDRIGTYQLFCHLFDQTTPNIAEPLPQFGFEQKASAQLSYLTPRARQAFLLIAVEGFNESEAGEIMKIDKQKFHELLSQASFDISQQIATQVMIIEDEPLIAMDIEQMVESLGHQVIGIARTHNEAVVMYHQKKPRLILADIQLADNSSGIDAVNDILKNDCIPVIFITAFPERLLTGERPEPTFLVTKPFNPNMVKALISQALFFQENASKAA
>NZ_CP019786.1|WP_078698138.1|1252874_1253090_-|hypothetical-protein
MNNFGEKNLTDYFTFEDDLLGTNSEIALKLRQFYMQIQEEPLPLRLLELLDKLEQAEQDSLHSEEKRFDPL
>NZ_CP019786.1|WP_078688856.1|1252323_1252878_-|sigma-70-family-RNA-polymerase-sigma-factor
MTQSSKDFKQELLFVLPALRAFAVSLSGTHDRAEDLVQDTLMKAWAKQESFEIGTNIKAWLFTILRNEFYSQMRKRGREVQDSDGVFTQNIAVHPSQYGTLDLHDFKKALNTLSAEQREAIILIGASGFSYEDAAAICNCAIGTVKSRVSRARNRLQKLLEVDGDTHYGPDLCSAGSILCSFSD
>NZ_CP019786.1|WP_078688855.1|1250688_1252107_-|sensor-histidine-kinase
MITKANLSSKIPISGSTTSRWRWGAIIVSLFMAFLASTFIILLSNAVDQEISQLDTSSELREQADLALISLIDMAAANRSYEKNRRVEDKVRFETAVLHLDDILNYIALLVHSHSQWYTWFTAFKKEIKARTAIMKDHMIALEASSGQSVHSSAFPEVKTTQVTSLVQLMANFIDGDDIERQKKREDIALMRAALTLAAIVSVVSTFISAYFVINRFRSDIQSLKTYQLLLHSENAALEARVKERTQELEKARNYAEKERCRVEMLLQDASHRIGNSLGTVSSLLGLQLNRSKNEEVRSVLGAARDRIQTISAAHRRLRLSDDMETTLLADFLNLVVHDVELAIPFELRENITLHKDFKDCRLSSRDATTLGIILGELLTNSLKHAFPDKRHGNIYIFCGPQKNGKMALIVEDDGVGMCSQNAELKTGLGRLVIEQLCMQFGEKALFETSALGGTKVIIPLTKIIGNCSERF
>NZ_CP019786.1|WP_078688854.1|1248121_1250110_+|M23-family-metallopeptidase
MWDNNQYQKNDPGQDPALVIQHSKPAKRQVSVRWLTGTILTGVTSCILMGIALFAALEGKHTLITPAQWFLLEDHSLEDYDKKGDRIAPTHARQSFDRKRQFELSTLQKKGNEKVVETQNFEWIRMALAEERRHKYTYPPFDALSIFSNDSNNQISQTLEGGQIYGAKVETKMTLRSHDFIIEQAHFDETDILTAEEAQKEIQKSGFALDKNNEKLSLLPFLDPAQLDISTPSLKVPKIPNVRLTQENVTITASNHRIDLTKNYAEDIIPIRKKKTILEALQKSDYPQEQMEKIAQTLAKLNRSDTLKAGNLLRIGIVTQHGEEDHLVRASIYQGMNHILTIALNDNNEFVASTEPEMSHTLKTAFQNGQPHSYVSVAQLPTVYDAIYQAVLSHNMSQSLSQHLIRLLAMNIDMKSRITPTDQLEIFYALPKQQAEKNSKNTKNGTQLQTASSSANGDPEIRYISATFGSVTYKYYHYQSTNGSADYYDSEGKSSKPFLLRKPIPNGIFGSPYGPRKHPILGYVRMHTGVDWIAPKGSPIIAVGDGVVTRVGVVSGYGNHTEIKHANGYVSSYSHQNNYAPNISPGVKIKQGQIIGYVGSTGLATGPHCHFEIIVNGKKVDPMRIRLPDSKSLKDKDLQAFLKEKKNIDSLIYSVTQPENAS
>NZ_CP019786.1|WP_078698134.1|1239731_1240829_+|DUF3792-family-protein
METRIPTKHPLERHFTGEFSLETESCHYRPSVLSWSSIFAGLLTLLATSVCFSFLLAALGLNQMTFFSPFSLEKSFLSVGVSSIFIFCLSFGLGGYVAGRFSDHSGALHGFLTWALFMLLVALQSAILLSGAAHLGAKTVSGVATTTKQAISDFSSEGGKLVPLTDRKNFEDFFNDKRNALFDFNKLSNDLQALLNKSDIPALNPDNLYNAYRESVKDLRSTITSFKNDPSNYRLLVKQLSERLSDRVKKLNTQIDRRDVIHQLTNNGLSQAEAENTAERAIDIYQTANKKTKEAIQSLNKQVEALSQNAPTHKGAQNSFAIADKAISTASKIGLWSFFASLLGAVIASISGYYGHKRRSHSYTL
>NZ_CP019786.1|WP_078698137.1|1237652_1239140_-|histidine--tRNA-ligase
MAMKQERTKARLPRGFIDRTSAQLYSIETMVAQIREVYELYGFEALETPIFEYTDVLGKFLPDSDRPNAGVFSLQDDDEQWMSLRYDLTAPLARYFSENFETLPKPYRSYRYGPVFRNEKPGPGRFRQFVQFDADIVGAPTVLADAEICMMAADSLERLGIQQEDYVIRLNNRKILDGVLGLIGLGGKEQEEKRLTVLRAIDKLDKFGSEGVRLLLGQGRLDESGDFTKGAGLKDKEIECVLALMAVSAKTAEETIDNLKKMVEHSDQALEGLCELEEMQAIFAENGYQNRIKIDPSVVRGLEYYTGPVFEAALLFDIFNDDGQKVVFGSVGGGGRYDGLVARFRGENIPATGFSVGVSRLISALQNLGKLPVKETIGPVVVLMMDKEPEALVRYQKMVMRLRQAGIRSELYLGASGIKAQMKYADRRRAPCVVIQGAQERQEGKIQIKDLVEGARLSHEIKDNQTWRESRPAQITVDEDQLVQTVQNILISQRS
>NZ_CP019786.1|WP_035007454.1|1237003_1237528_+|peroxiredoxin
MFRKKVPNVTFHTRVRDESVSGDNPYRWQDVNSDTYFKGKRVILFSLPGAFTPTCSTFQLPDFEKLYDEFKKVGIDEIYCVSVNDAFVMNAWGKDQGIKNVKLIPDGSGEFTRKMGMLVAKDNIGFGMRSWRYAAVIQDGIIEQWFEEPGISDNCATDPYEVSSPQNILKILQG
>NZ_CP019786.1|WP_078698136.1|1235167_1236796_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MTVNIISTTAFKDQKLGTSGLRKKVSTFQQPHYVENFIQSIFNTVGPLKGKLLILGGDGRYLNRTLIQIVLKMAAANGVGFIKVGKGGILSTPAVSHLIRKYHAHGGIIFSASHNPGGEQGDCGIKYNISHGGPAPTSLCNAIFAASQHLSFYKIVDVSEIDLDRQGTVFIGSMQVDVIDPVADYSALMQEIFDFECIAQAVSEGLNFRFDAMHAVTGPYAQEIFEKCLGFPEGTVVHGTPLPDFGGKHPDPNLVHAKDLYDLLMSEKGPDLGAASDGDGDRNLIIGRQQFITPSDSLAIMADHASLIKGYRRGLVGVARSMPTGRAVDCVAEKKGLNLFETPTGWKFFGTLLDAGKITFCGEESFGTGSDHVREKDGLWAVLFWLNLLAVTKKTVAQIAQQHWRTYGRFYFSRYDYEEVESHKAFAMVEQLSACLPELGTKVAGLTVEKADDFIYHDPIDHSVSIRQGVRIFFDNGARLVVRLSGTGTTGALVRLYLEQYEGDPRKHNQDPQQALHPLKQAAFEVLKIKHHLGREQPDIIT
>NZ_CP019786.1|WP_035006614.1|1255418_1255712_+|hypothetical-protein
MNPVLAVLLLVSCTDDFNSCYSNKTMVKIYPTAQACEQKIIPSIKEFTSYGEQIFAQCTNISASVPQQEITLIWSVTNKGNFFLKEQNTDETVSSAL
>NZ_CP019786.1|WP_078688861.1|1255838_1256258_+|hypothetical-protein
MYDSKAQNSEPCVLSQNTPLDPAVEQVRKKLMRLMIISISITLLLILAVFAGVVYKIIKPETTLKSAQPLSSSVPYHTLSLPAKTQILSQSLSQQNMILRLLTPEGQTKLMIYNYHTGELLSVFSVNITEKTMDSDSSL
>NZ_CP019786.1|WP_078688864.1|1257791_1258709_+|formate-dehydrogenase-accessory-protein-FdhE
MLHQKDSEGLDTPSTTHTPFMIKFPESEALFAKRAQRFTSLATTHSAKDTLLFLAHFCTIQQQSVKRFKDFSRALARFSTMSTPFIDRSKILELGFYESVVHDFLNNMSTYALPIKQKEALSRMHLRQDQWRLRGSNILNCEIPLQQEGEHLFITGVLQIIYSLAASQLNTEIIKIQQQNLCPSCRGTHSASIVVETGLEEGTRLCSCLYCGTLWHYPLLQCTFCESIQNVSSSNLDKSSGAIVVETCQTCQRSCNRLDQYKDPSLDVFADDIAYILDHLSQSSLPLKLGAFNPFLAVYINTQNK
>NZ_CP019786.1|WP_078698139.1|1258952_1259402_-|hypothetical-protein
MEKRLRARRKSYRKKLYKKITFFCIVLFCVLTFYFVVKTIISHFFFKQEIVQEEPVKLTIPTFDFRVYCKEIAALAVPDMVQQVYHRCFHLESEAFFAIRKMWEEVSDDAKKKCIKIIRPGDGNYFLLRDCLLGEQEKGEGNSQEHHHF
>NZ_CP019786.1|WP_035006609.1|1259871_1260123_-|hypothetical-protein
MIFLFRWGFAILLVIVIALSSFFYGRSFERTRSLIQAISALQNREKINAETFTLSPFSLCRALGGMPKECAVLLHRMEKASNH
>NZ_CP019786.1|WP_078688866.1|1260119_1260782_-|glycoside-hydrolase-family-protein
MRKISKEGLALIKQWEGLRLKAYQDVIGVWTIGYGHTEQAGKPVVQDGMEITQVEAETILRQDLKQFEQTVEREVTQFLTDEQFAALVSFCYNIGTEAFCNSTLLKKLNKGDYEAVPAELQKWIRAGGKRVQGLVHRRAAEAGLWAKGAYVSSNYQKVETTKSMPFFKAEVFAPLIASFSGLTGFVTGHGPVQWALASIMIVAVIVGIILYIDTVRKEQK
>NZ_CP019786.1|WP_035006607.1|1260883_1261147_-|hypothetical-protein
MALFPFSIADIDDPSHIRVVLYASGRMGHAPLNALLKQILQEGKREDKKHQKNYIQLLQRITALEEQLTTGIKDHSFSSEKAGRFPK
>NZ_CP019786.1|WP_035006606.1|1261699_1262689_-|tail-fiber-protein
MSSIYDWSLIAAENARADEIINWAEGQPPSSVNDSARAMMQRVKEYLSDIGGTVEVKFTITAEEKEESKKKTSIHLTTKAPYAAYQNGIVLRFKAQETNVGATSVVLNQLSSQPIYKGTQEGLRPLTGGEMQKEGLYELIYYSEIGEKKEEGWYLTNPAVVLPKVSVFPSGFIASFATEKIPDEWLLCDGKAYARGEYASLFEAIGEVWGKGDGTTTFNVPDFRGMFLRGLDSGKGIDKDRILGSEQKDSFKSHDHTGTTDKSGLHDHIYTGYEAADDALGGGGLLRRRWTQQRYTADSGEHTHKLIIDKTGGNETRPQNMAVIYAIKI
>NZ_CP019786.1|WP_078688867.1|1262694_1263810_-|tail-fiber-domain-containing-protein
MRRRTSPQVQTTTQTNAPPSWAEDILKQASAEALNLYNKGIGGNVYQGERHADLSETTQNALKGLENAANQYNNSVFNEWLKEPTKSAQNLSEMAAGNWIDNNSKFNDALSRALNKTSDVVNQSMAGAGRYGSGAHTGVLTDELGALATQATAQQYNQDINHMLNANQMIDRSMQNQVNTANNFYQGQSNAQNNALKGGMVQDANKQHALDVEREKWREQDNQAWNQLERLLQIGTKAAGNYGTKTGESTTMPAITKDPLRDAQRVLGLLKGIIGLSDVNVKENVVLVGEKNGYPLYEFNYKGNSQRYRGVLAQDLVRLNPDAVYMNIKTHLLHVNYNKLGFGLEKIKKPKKKFFAFFSSFFSWLWSAKKG
>NZ_CP019786.1|WP_078689061.1|1263715_1264291_-|hypothetical-protein
MPWKKKAKIVTQRSDHEDFYSLHCTHQWSWEKMALYREAMNAAMRKYAQRFPHDVCLKHMAEEIIGGQAQLWLILKNRTEFSAFVITKIEKTHDGKKRVVILDLAGQGGIKLVSLIDQLEQWARTIKADEILTLGRSGWAKMLVHHGYAINFIHYRKVLKHEKTDKSSGSNNDTNERSTLVGGGYLKTGKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

374403 : 449176

Acidithiobacillus_phage(18.75%)

protease,plate,terminase,head,capsid,tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078698012.1\|374403_375534_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_035006150.1\|375536_376460_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_078688389.1\|376588_378073_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	3.2e-21	35.2
WP_078673645.1\|378146_379022_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_078688390.1\|379298_380420_+	AAA family ATPase	A0A291LA07	Bordetella_phage	1.5e-103	52.9
WP_078688391.1\|380500_381235_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_078698014.1\|381691_382525_+	porin family protein	O11861	Bartonella_henselae_phage	3.2e-42	40.2
WP_078698015.1\|382677_383529_+	YopJ family type III secretion system effector serine/threonine acetyltransferase	NA	NA	NA	NA
WP_078698016.1\|383900_385568_+	BID domain-containing T4SS effector	NA	NA	NA	NA
WP_153300852.1\|387289_387427_+	hypothetical protein	NA	NA	NA	NA
WP_078698017.1\|389870_390551_-	lysozyme	A0A141GEY9	Brucella_phage	4.1e-48	64.9
WP_078688397.1\|390693_390918_+	antitoxin MazE family protein	NA	NA	NA	NA
WP_078689029.1\|390917_391241_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_078688398.1\|391602_392025_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_078688399.1\|392025_392289_-	hypothetical protein	NA	NA	NA	NA
WP_078688400.1\|392418_393726_-	late control protein	K4HZC6	Acidithiobacillus_phage	1.1e-68	38.8
WP_078688401.1\|393722_393947_-\|tail	phage tail protein	R9TR63	Vibrio_phage	7.0e-05	41.4
WP_078688402.1\|393943_394324_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	8.0e-17	38.6
WP_078688403.1\|396208_396325_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_078688404.1\|396321_396606_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_078688405.1\|396609_397116_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	1.7e-30	41.0
WP_078698018.1\|397115_398507_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	5.9e-134	53.7
WP_078698019.1\|398902_399436_+	phage antirepressor Ant	A0A0P0ZAZ7	Stx2-converting_phage	1.1e-24	41.6
WP_078688408.1\|399771_400023_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_078688409.1\|400104_400401_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_078688410.1\|400641_400884_-	hypothetical protein	NA	NA	NA	NA
WP_078688411.1\|400893_402192_-	hypothetical protein	NA	NA	NA	NA
WP_078698020.1\|405361_406468_-\|tail	phage tail protein	K4I1F8	Acidithiobacillus_phage	3.0e-19	34.8
WP_078688414.1\|406467_407292_-\|plate	baseplate assembly protein	A0A219VH98	Ochrobactrum_phage	1.3e-35	34.6
WP_078688415.1\|407288_407630_-\|plate	baseplate assembly protein W	Q75QM0	Wolbachia_phage	2.7e-32	60.6
WP_078688416.1\|407626_408316_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	5.2e-14	33.6
WP_078688417.1\|408296_408845_-	hypothetical protein	NA	NA	NA	NA
WP_078698022.1\|408899_409172_+	toxin HicA	A0A2P1A0R7	Gordonia_phage	9.2e-07	65.0
WP_004856761.1\|409161_409479_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_078688418.1\|414770_415130_-	hypothetical protein	NA	NA	NA	NA
WP_078688419.1\|415131_416208_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	5.0e-56	35.5
WP_078688420.1\|416220_416586_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	2.6e-12	46.7
WP_078688421.1\|416582_416849_-	hypothetical protein	NA	NA	NA	NA
WP_078698023.1\|416845_417916_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	6.9e-66	49.3
WP_078680032.1\|419463_419712_-	hypothetical protein	NA	NA	NA	NA
WP_078698024.1\|419715_421662_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	2.4e-157	50.4
WP_078688423.1\|421651_422221_-	hypothetical protein	NA	NA	NA	NA
WP_078688424.1\|422604_422901_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-12	45.9
WP_078688425.1\|423220_423952_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	8.4e-47	41.1
WP_078688426.1\|424873_425191_-	hypothetical protein	NA	NA	NA	NA
WP_078688427.1\|425762_426479_-	heat-labile enterotoxin subunit alpha	A0A023W6A1	Vibrio_virus	1.0e-28	39.5
WP_078698025.1\|426707_427292_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	4.5e-11	37.1
WP_078698026.1\|427288_427615_-	hypothetical protein	NA	NA	NA	NA
WP_078688430.1\|429035_429488_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	7.5e-30	55.7
WP_078688431.1\|429679_429979_+	hypothetical protein	NA	NA	NA	NA
WP_078688432.1\|429956_430262_+	cytoplasmic protein	NA	NA	NA	NA
WP_078688433.1\|430278_430572_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	5.4e-13	44.7
WP_153300959.1\|430583_430748_-	hypothetical protein	NA	NA	NA	NA
WP_078689031.1\|430744_431194_-	hypothetical protein	NA	NA	NA	NA
WP_078688434.1\|431371_431866_-	hypothetical protein	NA	NA	NA	NA
WP_078698027.1\|431780_432905_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	9.3e-13	48.0
WP_078698028.1\|432894_433374_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.8e-50	66.7
WP_078689032.1\|434288_434654_-	hypothetical protein	NA	NA	NA	NA
WP_078688436.1\|435180_435492_+	transcriptional regulator	NA	NA	NA	NA
WP_078688437.1\|435684_436065_+	hypothetical protein	NA	NA	NA	NA
WP_078698029.1\|436136_436862_+	phage regulatory protein/antirepressor Ant	A0A0U4J8Z7	Pseudomonas_phage	6.6e-28	35.4
WP_078698030.1\|436947_437739_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	2.6e-41	40.6
WP_078698031.1\|437740_438388_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	2.1e-41	42.3
WP_078680061.1\|438475_438733_+	hypothetical protein	NA	NA	NA	NA
WP_078673654.1\|440140_440671_+	hypothetical protein	NA	NA	NA	NA
WP_153300960.1\|440903_442184_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.0e-55	34.9
WP_078698033.1\|443465_444140_+	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_078698034.1\|444199_445492_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_078688441.1\|445734_446289_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_078688442.1\|446452_449176_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.0e-137	37.8

DBSCAN-SWA_2

766506 : 774839

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078688618.1\|766506_767019_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.7e-47	59.0
WP_035006738.1\|767023_767623_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.0e-42	53.2
WP_035006330.1\|767625_768132_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.7e-22	33.8
WP_078688619.1\|768165_770940_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.9e-100	33.7
WP_035006333.1\|771179_771668_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	8.1e-46	60.7
WP_078688620.1\|771926_774839_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.6

DBSCAN-SWA_3

1237652 : 1301468

Sinorhizobium_phage(13.33%)

portal,terminase,holin,capsid,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078698137.1\|1237652_1239140_-\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	1.3e-30	27.1
WP_078698134.1\|1239731_1240829_+	DUF3792 family protein	NA	NA	NA	NA
WP_078688854.1\|1248121_1250110_+	M23 family metallopeptidase	A0A2P1JY73	Gordonia_phage	6.5e-17	39.5
WP_078688855.1\|1250688_1252107_-	sensor histidine kinase	NA	NA	NA	NA
WP_078688856.1\|1252323_1252878_-	sigma-70 family RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	7.3e-19	38.7
WP_078698138.1\|1252874_1253090_-	hypothetical protein	NA	NA	NA	NA
WP_078688858.1\|1253252_1254047_+	response regulator	NA	NA	NA	NA
WP_078688859.1\|1254062_1255076_+	histidine kinase	NA	NA	NA	NA
WP_035006614.1\|1255418_1255712_+	hypothetical protein	NA	NA	NA	NA
WP_078688861.1\|1255838_1256258_+	hypothetical protein	NA	NA	NA	NA
WP_078688864.1\|1257791_1258709_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_078698139.1\|1258952_1259402_-	hypothetical protein	NA	NA	NA	NA
WP_035006609.1\|1259871_1260123_-	hypothetical protein	NA	NA	NA	NA
WP_078688866.1\|1260119_1260782_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	2.6e-47	63.6
WP_035006607.1\|1260883_1261147_-	hypothetical protein	NA	NA	NA	NA
WP_035006606.1\|1261699_1262689_-\|tail	tail fiber protein	D5LGZ0	Escherichia_phage	4.8e-21	38.1
WP_078688867.1\|1262694_1263810_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_078689061.1\|1263715_1264291_-	hypothetical protein	NA	NA	NA	NA
WP_078688868.1\|1264657_1266121_-	hypothetical protein	D6PEY0	uncultured_phage	1.0e-43	27.0
WP_078689062.1\|1266121_1266775_-	hypothetical protein	NA	NA	NA	NA
WP_035006602.1\|1266906_1268037_-\|capsid	N4-gp56 family major capsid protein	M4M9G4	Vibrio_phage	3.1e-16	24.6
WP_078698140.1\|1268163_1269033_-	hypothetical protein	NA	NA	NA	NA
WP_078698141.1\|1269262_1271059_-\|portal	phage portal protein	A0A248SKZ2	Klebsiella_phage	2.5e-31	23.1
WP_078698142.1\|1271058_1272387_-\|terminase	terminase	A0A088F6U9	Sulfitobacter_phage	9.6e-142	56.5
WP_035006598.1\|1273065_1273383_-	hypothetical protein	NA	NA	NA	NA
WP_078688872.1\|1273925_1276526_-	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	2.6e-119	34.8
WP_153300887.1\|1276675_1276840_-	hypothetical protein	NA	NA	NA	NA
WP_153300888.1\|1276844_1277015_-	hypothetical protein	NA	NA	NA	NA
WP_153300888.1\|1277036_1277207_-	hypothetical protein	NA	NA	NA	NA
WP_078674116.1\|1277516_1277702_-	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_078688874.1\|1277811_1278462_-	septum formation protein Maf	NA	NA	NA	NA
WP_013545481.1\|1278668_1278887_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_078688875.1\|1279369_1279879_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.2e-17	38.1
WP_078698143.1\|1279971_1281087_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_078689063.1\|1281486_1281612_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_153300889.1\|1281611_1282469_+	hypothetical protein	NA	NA	NA	NA
WP_078688877.1\|1282774_1283383_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_078689065.1\|1283401_1284265_+	YmdB family metallophosphoesterase	NA	NA	NA	NA
WP_078688878.1\|1284877_1286170_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_078673983.1\|1286974_1287592_-	exonuclease	Q9MC71	Pseudomonas_phage	2.4e-34	45.2
WP_078689066.1\|1288082_1288274_-	hypothetical protein	NA	NA	NA	NA
WP_078688880.1\|1288284_1288674_-	hypothetical protein	NA	NA	NA	NA
WP_078688881.1\|1288978_1289299_-	helix-turn-helix transcriptional regulator	A0A2L0V128	Agrobacterium_phage	1.3e-20	52.6
WP_078688882.1\|1289757_1290885_+	YdaU family protein	A0A076GD06	Sinorhizobium_phage	1.9e-18	39.6
WP_153300964.1\|1293029_1293173_-	hypothetical protein	NA	NA	NA	NA
WP_078688883.1\|1293315_1293921_+	hypothetical protein	NA	NA	NA	NA
WP_035006581.1\|1294891_1295500_+	DedA family protein	NA	NA	NA	NA
WP_078688884.1\|1295512_1296067_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_078688885.1\|1296793_1297591_+	hypothetical protein	NA	NA	NA	NA
WP_035006576.1\|1297958_1298510_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	2.5e-35	51.6
WP_078688886.1\|1298965_1299442_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_078688887.1\|1299422_1300247_-	tonB-system energizer ExbB	NA	NA	NA	NA
WP_035006790.1\|1300706_1301027_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_078688888.1\|1301030_1301468_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage