CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019894	Neisseria lactamica strain Y92-1009 chromosome, complete genome	10 crisprs	DinG,DEDDh,cas1,cas3,cas2,c2c4_V-U1,cas4,cas7,cas8c,cas5	1	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019894_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_1

153483-153585

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCGAAAGCGGGAATCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_1

>merge|NZ_CP019894|1|153483-153585|CRISPRCasFinder
CGTCATTCCCGCGAAAGCGGGAATCTAAAAACCCAACGCGGCAAAAATTTATCCGAAACAACAAAAATTTTTTCATCGTCATTCCCGCGAAAGCGGGAATCTA

>NZ_CP019894|1|1|153483-153585|CRISPRCasFinder
CGTCATTCCCGCGAAAGCGGGAATCTA	AAAACCCAACGCGGCAAAAATTTATCCGAAACAACAAAAATTTTTTCAT
CGTCATTCCCGCGAAAGCGGGAATCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003712911.1\|155923_156361_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_CP019894.1\|WP_003714619.1\|146690_147434_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP019894.1\|WP_045750340.1\|142541_143270_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP019894.1\|WP_003712917.1\|158662_158812_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003712918.1\|158828_160613_-\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
NZ_CP019894.1\|WP_003712900.1\|149045_150947_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP019894.1\|WP_003712906.1\|153810_155586_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP019894.1\|WP_003712909.1\|155585_155855_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|224836
NZ_CP019894.1\|WP_003712903.1\|152428_153367_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP019894.1\|WP_045750345.1\|143422_144664_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP019894.1\|WP_003708904.1\|161416_162217_-\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP019894.1\|WP_045750212.1\|157074_157899_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_CP019894.1\|WP_003712916.1\|157989_158622_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293823
NZ_CP019894.1\|WP_003714621.1\|147430_148120_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_CP019894.1\|WP_003708924.1\|151384_151591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003712912.1\|156442_157006_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_CP019894.1\|WP_003712902.1\|151544_152420_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_CP019894.1\|WP_147278193.1\|161072_161435_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003710857.1\|146096_146660_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|236354
NZ_CP019894.1\|WP_003714622.1\|148146_148350_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003712911.1\|155923_156361_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	8.57712e-35
NZ_CP019894.1\|WP_003714619.1\|146690_147434_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.03079e-48
NZ_CP019894.1\|WP_045750340.1\|142541_143270_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	2.47622e-147
NZ_CP019894.1\|WP_003712918.1\|158828_160613_-\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	9.97348e-133
NZ_CP019894.1\|WP_003712900.1\|149045_150947_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP019894.1\|WP_003712906.1\|153810_155586_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP019894.1\|WP_003712903.1\|152428_153367_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.61385e-122
NZ_CP019894.1\|WP_003710857.1\|146096_146660_+\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|236354	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase.	1.02258e-102
NZ_CP019894.1\|WP_045750212.1\|157074_157899_-\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	9.77669e-153
NZ_CP019894.1\|WP_003712916.1\|157989_158622_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293823	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Salmonella enterica serovar typhimurium YcbL which has type II hydroxyacylglutathione hydrolase (EC 3.1.2.6, also known as glyoxalase II) activity, and has a single metal ion binding site, and Thermus thermophilus TTHA1623 which does not have GLX2 activity and has two metal ion binding sites with a glyoxalase II-type metal coordination. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.06743e-113
NZ_CP019894.1\|WP_003714621.1\|147430_148120_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	1.08292e-59
NZ_CP019894.1\|WP_003708904.1\|161416_162217_-\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	1.96995e-87
NZ_CP019894.1\|WP_003712912.1\|156442_157006_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	4.01456e-98
NZ_CP019894.1\|WP_003712902.1\|151544_152420_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.82547e-82
NZ_CP019894.1\|WP_003712909.1\|155585_155855_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|224836	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism].	3.1911e-36
NZ_CP019894.1\|WP_045750345.1\|143422_144664_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	3.3719e-144

>NZ_CP019894.1|WP_003712903.1|152428_153367_+|ABC-transporter-ATP-binding-protein
MLKLNKVCKRFGNKTVADDICLTVGRGKILAVLGRSGCGKSTLLNMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQKMPKAEAESLALSALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFSSLDTHLRDRLRRMTAERIRNGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPETLVKTPADAQVARLMGLPNTDDDRHIPQHAVRFDQDGIECRVLSRTCLPESFSLSVLHPEHGILWLNLDMRHAGEVSGNGTVRIHIEDREIVRFR
>NZ_CP019894.1|WP_003712902.1|151544_152420_+|NUDIX-domain-containing-protein
MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGNLSPEWAERVKKDWEAGCSESSDGIFLNADGWPDMGRRLQHLARIWKEAGLLHGWRDECFDLTDGGGNPLFALERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDKLDNTAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPFIRPVSRLHSLRPVSRGVHNEILYVFDAVLPETFRPENQDGEVAGFEKMDIGGLSDAMLSGRMMHDAQLVTLDAFDRYGLIAPNHPLSGWLRGIRT
>NZ_CP019894.1|WP_003708924.1|151384_151591_+|hypothetical-protein
MPRGFVLPVSCRLRFLPDFPSCRNIGTAARRLFAVANSGGLITIFRIMFKKADYADRPFYRIRQQTRP
>NZ_CP019894.1|WP_003712900.1|149045_150947_-|phosphomethylpyrimidine-synthase-ThiC
MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRDDIRVPLREIRQDDTYTAQGTEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLDERGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKAGRNVTQLHYARQGIITPEMEFVAIRERLKLDELSQKPEYAKLLKQHAGQSFGANIPTRPDQITPEFVRREIAAGRAIIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDLSTGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHKENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIADANDESQFAELHTLGELTAKAWEHDVQVMIEGPGHVPLQRVKENMIEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHLGLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPERAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEFVKKGAKLYS
>NZ_CP019894.1|WP_003714622.1|148146_148350_-|hypothetical-protein
MNRQKYPNRHSRAGGNPDLSVQKFIGLTAFHFPFHPEKRKKYRLKAAAAVCAAGCDAAFRMSVWAEA
>NZ_CP019894.1|WP_003714621.1|147430_148120_+|M48-family-metallopeptidase
MTSLIHTLSDGIELTIEVKRRAKKNLIIRPIGTHTVSISVPPHLSAAALNRWLRDNEAVLRRTLAKTPPQNTANRLPEHIWFHGRQLALTAHQDAQILLMPSEIRVPEDAHDKQLALLRNFLERQAHSYLIPRLERHARATQLFPAAASLTSAKTFWGVCRKTTGIRLNRRLVGAPEYVADYVCIHELCHLAHPDHSRAFWALTRRFAPYTPEAKQWLKIHGRELFALG
>NZ_CP019894.1|WP_003714619.1|146690_147434_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLIIRNLAYWLILASSLIFLFPFMLLASPFRDGAHKMARVWVKILNLSLKHIVGLKYRIIGAENIPDRPSVICAKHQSGWETLALQEIFPPQVFVAKRELFKIPFFGWGLKLVKTIGIDRNNRREANERLMKQGLARKNEGYWITIFPEGTRLAPGKRGKYKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPPVPHASGSEAELMEKCERLIETQQPLISGAGPFAAKMPSETV
>NZ_CP019894.1|WP_003710857.1|146096_146660_+|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKLIILDRDGVINQDRDDFVKSADEWIPVEGSMDAVAFLTQAGCTVAVATNQSGIGRKYFTVQDLTEMHAKMHRLVRQAGGEINGIWFCPHTDADGCNCRKPKPGMVEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHELPEHTQVFDSLLDFSQYIMRENAAPDAV
>NZ_CP019894.1|WP_045750345.1|143422_144664_+|tryptophan-permease
MPNKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFAGSLIVLLYTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYIFVGGDLTAKGIGNALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTGILIGGMVLTFIWATGGLIADAKPSVLFDTQAPAGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGDAPKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNAFAPVIAAEGQVSVLIETLSKFAQTGNMDKILTLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLVSCLLFPTGFVTAIGYVGLAATIWTGIIPAMLLYRSRQKFGAGKTYKVYGGLWLMVWVFLFGIANIAAQVLSQMELVPVFKG
>NZ_CP019894.1|WP_045750340.1|142541_143270_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNNVADIEYECIRVEDLAGAEPHSFDAVTCMEMMEHVPDPAAIVRACAKLVKPDGMVFFSTINKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPADLARMCRQAGLDVVETKGMTFSVLSQTYALCDSTDVNYMFACRPAF
>NZ_CP019894.1|WP_003712906.1|153810_155586_-|phosphoenolpyruvate--protein-phosphotransferase
MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDETVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLITEGETVIVDGINGILIIAPDETVLDEYRRRAREYRSHKRELNKLKKTAAATADGVCIELLGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYSAIVKKMKGKSVTIRTVDLGVDKNPRWFGQNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVHGPVRMMWPMITSVSEVRQCLIHLDTARRQLAERGDAFGDVGVGCMIEIPSAALTVGSILKPVDFISVGTNDLIQYILSVDRSDDSVGHLYRPGHPAVLKMLQHIIRTANRMEKDVSVCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILNSNIAQLENEIAKIVRCEDEEKAEKLIKQMNSAPAGEEAEAKGRK
>NZ_CP019894.1|WP_003712909.1|155585_155855_-|HPr-family-phosphocarrier-protein
MLKQSIEIINKLGLHARASSKFTQTASQFKSEVWVTKNGSRVNGKSIMGLMMLAAAKGTVIELETDGADEAEAMRALADLINDCFGEGE
>NZ_CP019894.1|WP_003712911.1|155923_156361_-|PTS-sugar-transporter-subunit-IIA
MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQDDIINNAIAALQEFPENHGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAVQYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV
>NZ_CP019894.1|WP_003712912.1|156442_157006_-|hypoxanthine-guanine-phosphoribosyltransferase
MTDLETKRLETQAMLENAELLFDQGQCRAALQKVADEITRDLGDKYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIRGRHVVVLDDILDEGHTMSAIQTKLLEMGAASCRSAVFANKLIDKEKPVKADYVGLDVPNRYVFGYGMDAAGCWRNLGEIYALDGK
>NZ_CP019894.1|WP_045750212.1|157074_157899_-|DNA-ligase
MIKKIIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMSEKLDGVRAYWDGKHLISRQGYAFAPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRSASSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRQHAMDFLKQIEAQGGEGVMLRHPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGAVGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR
>NZ_CP019894.1|WP_003712916.1|157989_158622_+|MBL-fold-metallo-hydrolase
MTLRYEIFPVTPFRQNCTLIWDDESGKAVLTDVGGDVPFLLQALANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPILGPHREDEFLLQSLPQTTAQYGFPVSPAFSPNRWLEEGETLAVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETIGRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF
>NZ_CP019894.1|WP_003712917.1|158662_158812_+|hypothetical-protein
MPSETQKAQTTAALPEHLAGQGFGKYFKQTPNQNRYSYATLSAFPLRLK
>NZ_CP019894.1|WP_003712918.1|158828_160613_-|DNA-recombination-protein-RmuC
MGLMAFVLPLATLLPGVLITWLMMKNQLQGKISGLNAQLAEKAARCDFVEQAHGKTVSELAVLDEKYRHLQDENYALGNRFSAAEKQIAHLQEKEAESVRLKQSYIDLQEKAQGLAVENERLATQLGQERKAFADQYALERQIRQRVETDLEESRQTVRDVQNDLSDVGNRFAAAEKQIAHLQEKEAEAERLRQSHTELQEKAHGLAVENERLNTQIEQERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERIHGFGELVKQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWGEMILETVLENSGLQKGREYVVQAASVRKEEDGSTRRLQPDVLVNLPDNKQIVIDSKVSLTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVEPAYLLALQNDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGGKLYDKFVGFVQTLESVGKGIDQAQSSFQTAFKQLAEGRGNLVGRAEKLRLLGVKANKQLARDLTERANETTALSESLEYAAEDEAV
>NZ_CP019894.1|WP_147278193.1|161072_161435_-|hypothetical-protein
MERRTLNSRNKRQILCGLPFLSCLLFDWLECRLNRPAALQTALLREKVGGIGGKLILRCGNLSQIKIENAYIVIPAKVGIRKFNVMSIYQKRLKSNGPDSRLRGNDEILGFCFGFGFLWE
>NZ_CP019894.1|WP_003708904.1|161416_162217_-|cytochrome-c1
MRAAKMKQTLKNRFAALLLAVPMSAAFASGGGHYEKVDIDLRDQVSLQRGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDAAKWFGAAPPDLTLIARSRGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQGVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVNYLVYMGEPAQLQRKRIGYVVMIFLLAVMLPLAYFLKKEYWKDVH

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Crispr_ID: NZ_CP019894_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_2

247859-247959

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCCTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_2

>merge|NZ_CP019894|2|247859-247959|CRISPRCasFinder
CTAGATTCCCGCCTGCGCGGGAATGACGATTTGGAAATTATCTGAAACCCAAAAACAACTGAAACCGAACAGACTAGATTCCCGCCTGCGCGGGAATGACG

>NZ_CP019894|2|2|247859-247959|CRISPRCasFinder
CTAGATTCCCGCCTGCGCGGGAATGACG	ATTTGGAAATTATCTGAAACCCAAAAACAACTGAAACCGAACAGA
CTAGATTCCCGCCTGCGCGGGAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003714658.1\|246013_246460_+\|pilin	unknown	unknown	gnl\|CDD\|365884
NZ_CP019894.1\|WP_003713046.1\|243119_244634_+\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP019894.1\|WP_003714669.1\|251271_253662_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP019894.1\|WP_003713043.1\|238435_239650_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP019894.1\|WP_003713041.1\|236986_238234_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NZ_CP019894.1\|WP_003713045.1\|241428_242772_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|224425
NZ_CP019894.1\|WP_045750347.1\|250135_251008_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP019894.1\|WP_003714672.1\|255222_256164_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NZ_CP019894.1\|WP_042508111.1\|251047_251275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003709262.1\|233506_234340_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP019894.1\|WP_078835841.1\|258506_258914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_002215574.1\|236583_236820_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP019894.1\|WP_045750215.1\|235150_235330_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714675.1\|256164_256563_-\|type-II-restriction-endonuclease-SsoII	unknown	unknown	gnl\|CDD\|370247
NZ_CP019894.1\|WP_003714662.1\|248011_250048_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223416
NZ_CP019894.1\|WP_003714671.1\|253757_255143_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP019894.1\|WP_003714678.1\|256634_257639_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|225927
NZ_CP019894.1\|WP_013448265.1\|257635_258328_-\|type-II-restriction-endonuclease-NlaIII	unknown	unknown	gnl\|CDD\|283073
NZ_CP019894.1\|WP_003714660.1\|247019_247586_+\|manganese-efflux-pump-MntP-family-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP019894.1\|WP_003713039.1\|235345_236353_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003714658.1\|246013_246460_+\|pilin	gnl\|CDD\|365884	pfam00114, Pilin, Pilin (bacterial filament). Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better.	3.54737e-28
NZ_CP019894.1\|WP_003713046.1\|243119_244634_+\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP019894.1\|WP_003714669.1\|251271_253662_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP019894.1\|WP_003713043.1\|238435_239650_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.13935e-74
NZ_CP019894.1\|WP_003713041.1\|236986_238234_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP019894.1\|WP_003713045.1\|241428_242772_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|224425	COG1508, RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription].	5.48742e-157
NZ_CP019894.1\|WP_045750347.1\|250135_251008_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.75416e-17
NZ_CP019894.1\|WP_003714672.1\|255222_256164_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	3.34143e-140
NZ_CP019894.1\|WP_003709262.1\|233506_234340_+\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	1.42939e-69
NZ_CP019894.1\|WP_002215574.1\|236583_236820_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	4.37824e-37
NZ_CP019894.1\|WP_003713039.1\|235345_236353_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP019894.1\|WP_003714675.1\|256164_256563_-\|type-II-restriction-endonuclease-SsoII	gnl\|CDD\|370247	pfam09019, EcoRII-C, EcoRII C terminal. The C-terminal catalytic domain of the Restriction Endonuclease EcoRII has a restriction endonuclease-like fold with a central five-stranded mixed beta-sheet surrounded on both sides by alpha-helices. It cleaves DNA specifically at single 5' CCWGG sites.	5.93325e-07
NZ_CP019894.1\|WP_003714662.1\|248011_250048_-\|M3-family-metallopeptidase	gnl\|CDD\|223416	COG0339, Dcp, Zn-dependent oligopeptidases [Amino acid transport and metabolism].	0
NZ_CP019894.1\|WP_003714671.1\|253757_255143_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP019894.1\|WP_013448265.1\|257635_258328_-\|type-II-restriction-endonuclease-NlaIII	gnl\|CDD\|283073	pfam05315, ICEA, ICEA Protein. This family consists of several ICEA proteins from Helicobacter pylori. Helicobacter pylori infection causes gastritis and peptic ulcer disease, and is classified as a definite carcinogen of gastric cancer. ICEA1 is speculated to be associated with peptic ulcer disease.	2.29804e-126
NZ_CP019894.1\|WP_003714660.1\|247019_247586_+\|manganese-efflux-pump-MntP-family-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	9.86106e-56
NZ_CP019894.1\|WP_003714678.1\|256634_257639_-\|DNA-adenine-methylase	gnl\|CDD\|225927	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.14493e-129

>NZ_CP019894.1|WP_003714660.1|247019_247586_+|manganese-efflux-pump-MntP-family-protein
MGFYALLLIALGMSMDAFAVALAKGAAVRMLPRKIAATALVFGTVEALTPLAGWAGGFYAKPFISEWDHWAAFVLLGGLGLKMLREGLSGGADDVREPKRESWWLTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAIIGMATTVMVAVGLAAGGALGGLFGKRAEFAGGLVLIAIGTWTLLSHLGLIG
>NZ_CP019894.1|WP_003714658.1|246013_246460_+|pilin
MKAIQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQMSEALTLAEGQKSAVVEYYSDNGTFPNTNASAGIANASDIKGKYVASVNVSGTASLAKITATMNSSGVNNDIKGSTLVLEGKQNSGSFEWTCKAGTVKEKFLPSSCRAK
>NZ_CP019894.1|WP_003713046.1|243119_244634_+|catalase
MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEKLADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAGERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKFHFRTQQGIKNLTNEEAAKIIAEDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKVPYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKMLQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSFGQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDTQKQALFGNTAAAMGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL
>NZ_CP019894.1|WP_003713045.1|241428_242772_-|RNA-polymerase-factor-sigma-54
MTLLGIKLKQTQQLDRRLQQSLRVLQMSGIELEREVEDWLSDNPLLERKDTDEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEEDFKQYLHAQVCEHPLSDQEAACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLQHALTALKKFDPAGVAAADLTESLILQIERSGECAAKSAALHIVRNALDSIDGNRSQTLARIKKRLPQTDSGTLEAALDLIASLNPFPAAGFASSTPVPYIRPDVRVEEGKDGWTVSFNEDAQPALQLNREYCGLMPSEGVSPEWKEKIGEARQYLDALELRKATVVRLAEYIVKHQADFFTFGEIGLVPLLMKDAAAELGVAESTVSRAANQKYLSCPRGVFPLHHFFTSAVQTEGSGEIFSQTAAKAVLSQLIDNEDRHKPHTDETIVRLLKLRGIEVSRRTVAKYRESLGIPAAHRRKTAE
>NZ_CP019894.1|WP_003713043.1|238435_239650_+|MFS-transporter
MTHTASKTPKLWAVIAAAAFILLITIGMRMTLGLFVQPVVNTTELSIARFSLIIAVFQLMWGVSQPLSGALADRFGAFRVLSGGAVLLVCACLIAPNIPTYWGLMIAVGLLLAFGTGSGGFSIIMGQVAAQIPAHRRGLASGLVNAGGSAGQFLFAPLVQGLTALPQAGWTGTFYVWAGIALLILPAARLLAGKTPACGTPHTHIESGQTLRQALKTAFKNPGYLLLHLGFFTCGFHIAFLVTHLPTEIALCGLPATVASTAIAIIGLANIAGCIFSGWCTSRIRGKYVLFWLYASRAAMVLVYIFSPKTDFNFYIFAAALGFTWLATVTPTASITGKLFGTRYLATLFGLTMLSHQIGGFLGSYIGGIVITQFGDYGWMWYADALLAGTAALLNLPIREPETA
>NZ_CP019894.1|WP_003713041.1|236986_238234_+|beta-ketoacyl-ACP-synthase-II
MSQRRVVITGLGQVSPVGNTVAEAWDNLLAGKSGIGAITRFDASDINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRVGVNIGSGIGGLPGIEATGKAVLEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYGMVSACTTGAHAIGDSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPATASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIIGFGMSSDAYHITAPNEEGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTIVSSTKSMTGHLLGAAGGVEAVYSILAIHDGKVPPTINIFEQDIEAGCDLDYCANEARDAKIDVAISNSFGFGGTNGTLVFKRFKG
>NZ_CP019894.1|WP_002215574.1|236583_236820_+|acyl-carrier-protein
MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELVMALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG
>NZ_CP019894.1|WP_003713039.1|235345_236353_-|quinone-dependent-dihydroorotate-dehydrogenase
MYPLARRILFALDAEKAHHFTLNALNTAYKLGLIPVTGNRTKPVKLMGMDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPKPQPGNPQPRLFRVPEHRGIINRMGFNNHGIDAMIRNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAYAHASYITVNISSPNTKNLRALQGGDELGALLEALKNKQAQLASAHGKYVPLAVKIAPDLDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVLKLLADHIDGKLPIIGVGGIMEGRDAAEKIRLGATAVQVYSGLIYKGPALVKECLKALAR
>NZ_CP019894.1|WP_045750215.1|235150_235330_-|hypothetical-protein
MPSERTSCRSDGIFVSFFRLPPLENPKRADLFKIRQTPAANRTILIRSQSKSGGKLLNI
>NZ_CP019894.1|WP_003709262.1|233506_234340_+|DUF4198-domain-containing-protein
MKQWMLLGLLGLGAVAQAHDVWVAAPTHQPAGKILHADLGYSHDFPNVEKIADDRVHIFKPLQLTGSSKKTVDLVNKGENYQYVSKAALPEGSYWVSATYKPTFWSKNQDGWKQQTLKQLAGSTYCEQAQMFGKSFVQVGNGAVDEAVLTRPIGQELELVPLKNPNEVKAGGILPVKVLYKGEPLVKATVTASSDTLAEMDLESTHDHREPQGFSGKTDKNGVVNVITLIDGLWKIKVVNETDYGDKSVCQKDNTYATLIVPVGTKRAAARHAHHHH
>NZ_CP019894.1|WP_003714662.1|248011_250048_-|M3-family-metallopeptidase
MTDNALLHLGEEPRFDQIQTADIKPALQTAIAEARGQIAAIKAQTHTGWANTVESLTGITERVGRIWGVVSHLNSVVDTPELRAVYNELMPEITVFFTEIGQDIELYNRFKTIKNSPEFATLSPAQKTKLDHDLRDFVLSGAELPPEQQAELAKLQTEGAQLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSEGKTGYKIGLQIPHYLAVIQYADNRELREQIYRAYVTRASELANEGKFDNTANIDRTLENALKTAKLLGFKNYAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLNLADPQPWDLGYAGEKLREAKYAFSETEVKKYFPVGKVLAGLFAQIKKLYGIGFTEKTVPVWHKDVRYFELQQNGETIGGVYMDLYAREGKRGGAWMNDYKGRRRFADGTLQLPTAYLVCNFTPPVGGREARLSHDEILTLFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWEYNVLMQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDECRLKNWQQVLDSVRKEVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAAFEESGDIAATGKRFWQEILAVGGSRGAAESFKAFRGREPRIDALLRHSGFDNAA
>NZ_CP019894.1|WP_045750347.1|250135_251008_-|mechanosensitive-ion-channel-family-protein
MEIWNLLNTWLDAVPIRAEAVESVAAVAALLLARALLLNIHFRRHPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELIMCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVSFPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQRHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRVQYRLLNHPADSETL
>NZ_CP019894.1|WP_042508111.1|251047_251275_+|hypothetical-protein
MAKKRFCHFAGKSRPVPAANEPPALSDGIRMRITLNQAAKSAIIHNYIRRPARFFHKARTVLAASQNLFKIRQKI
>NZ_CP019894.1|WP_003714669.1|251271_253662_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDSDKKGTTVRFLAGTETFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVISRALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGKVLEGKELEDAAKQFLLAKTVIGQESRIIDDLVLKAMLYAEPVDLSSAESTDRAIADLSALLDEKEVVLERVEGHEGNRFIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAVLKGLVAAGSTLFKGETEYPVGSFEEALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRVEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA
>NZ_CP019894.1|WP_003714671.1|253757_255143_+|L-serine-ammonia-lyase
MISIFDIFKIGIGPSSSHTVGPMKAAAAFAADLDAQTARIAIDIYGSLALTGYGHGTFDALMLGLEGSLPHDIPLAGIPERLERIRTRHILRLNGQEIRFIPDRDLNIRGNQVLPKHPNGLRFTAYASDGIVLKEQVYYSTGGGFVVTGEDFERQSETEKAVPYPYTSCAELLARCRLNRFDISEVVLANEAALAGCGEAEIRRRVAAVAEVMEGCIKRGLAADGELPGGLNVRRRAPHLAAKLKVLRETEIVNTQLWPMVYAMAVNEENAAGGRVVTAPTNGAAGIIPAVLHYFRKFNPHATQERVENFLLTAGAIGILYKTNASISGADVGCQGEVGVACSMAAGAYAEVIGGTPKQVENAAEMAMEHHLGLTCDPVGGLVQIPCIERNGIAAEKALKLGTLALLEDGTDKKVSLDEVIRTMLQTGRDMKATYKETSLAGLAATLRKKAVPVSVRVVEC
>NZ_CP019894.1|WP_003714672.1|255222_256164_-|DNA-cytosine-methyltransferase
MFKIIDLFAGIGGIRLGFEQAFDGVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTDVADIPDHDILLAGFPCQPFSQAGLKKGFADTRGTLFFDIERILLAKKPQAFLLENVKQLKGHDKGRTLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIYLVGFLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLWQGHQRRKAENRAAGKGFGYGLFNAESAYTNTISARYYKDGSEILIEQPGKKPRKITPREAARLQGFPDSFQIPVSDAQAYRQFGNSVCVPVIRAIAEQMKAALSAVSDRKV
>NZ_CP019894.1|WP_003714675.1|256164_256563_-|type-II-restriction-endonuclease-SsoII
MGYPFDSQSQVGKEVFAKLGLGKLVDSILPGIDAFNERRDKTVIGTMKTTLRERRREVVEEVSRSNVPNIYLLTVDDDISENKVIQMNNHNIVPVVPQSIKNQPHLKDKRSVIDFESYFLEEIPNVMKYWKK
>NZ_CP019894.1|WP_003714678.1|256634_257639_-|DNA-adenine-methylase
MNYIGSKLKLSNWLETEISNVAGHSLSDKVFCDLFAGTGIVGRKFKTNVKQVIANDMEYYSYVLNRNYIGNCQSILKAGELLQRLEQLPPKEGLVYRHYCLGSGSERQYFSDENGKKIDAVRIQIEEWKNTHYIDEDTYYFLLATLLESADKVANTASVYGAFLKNLKKSALKPLSLEPALFEIGSDGHQVYQADANKLIKNISGDILYLDPPYNARQYGANYHLLNSIALYDDFTPKGKTGLREYSRSKYCSKSDVVPVFEALIRDADFQYIFLSYNNEGLMSIGQVREIFERFGKYDLVQTEYRRFKADKTENRNHKANSTFEYLHILEKTF
>NZ_CP019894.1|WP_013448265.1|257635_258328_-|type-II-restriction-endonuclease-NlaIII
MKITKTELFLRLAKPNEQGISRWVSTSEFAGEYKDLKLGNGGSWCRKDSPLARDYIVEFDKGLTSGNSIDAIRLNGFNQEKHFKQYIRKDIKDALKTRNCVMLGVNGKSENTKIEIDHKDGRKNNHRVSDIKTQKLEDFQPLCKAANDVKRQICKACKETNKRWSAKNISGNPYAFYMGDENYSEELGCVGCYQYDPVEYRKSSVKRIAAEAAKYTSDYIFKKLYEEDNG
>NZ_CP019894.1|WP_078835841.1|258506_258914_+|hypothetical-protein
MAFCEPAARFTGVLLCNFMALGSFTAWKALPPDIWKGGFLLGRCRLNECRRGGDRQFMDYNSVVPYAENRSRSDDTPIDSAIAIRQCKAHRRYPPAIWQTMQYRNILQHTPKPALKHLVQRKTGWEWKNPETNIF

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Crispr_ID: NZ_CP019894_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_3

450598-450717

Orphan

Consensus_repeat	Method
ACCGCATTTGCCTTCGCCGCATTTGCCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_3

>merge|NZ_CP019894|3|450598-450717|CRISPRCasFinder
ACCGCATTTGCCTTCGCCGCATTTGCCTTCGGCAGATTTGGCTTTGGCTTTAGATGCTTTGGTGTGTTTGTGGGCTTTTTTTACGGTTGCACCGCATTTGCCCTCGCCGCATTTGCCTTC

>NZ_CP019894|3|3|450598-450717|CRISPRCasFinder
ACCGCATTTGCCTTCGCCGCATTTGCCTTC	GGCAGATTTGGCTTTGGCTTTAGATGCTTTGGTGTGTTTGTGGGCTTTTTTTACGGTTGC
ACCGCATTTGCCCTCGCCGCATTTGCCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_004467774.1\|444825_446097_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP019894.1\|WP_045750147.1\|452387_453290_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP019894.1\|WP_003710762.1\|448892_449639_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP019894.1\|WP_115119968.1\|462216_464124_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP019894.1\|WP_002215152.1\|448098_448278_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP019894.1\|WP_003710770.1\|444373_444667_-\|DUF4298-domain-containing-protein	unknown	unknown	gnl\|CDD\|372919
NZ_CP019894.1\|WP_004467753.1\|457992_462162_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP019894.1\|WP_004467766.1\|448283_448871_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564
NZ_CP019894.1\|WP_002215129.1\|467554_467770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_002227769.1\|453392_454496_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP019894.1\|WP_004467762.1\|449628_450471_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NZ_CP019894.1\|WP_003750600.1\|455388_456846_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NZ_CP019894.1\|WP_004467759.1\|451694_452183_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379725
NZ_CP019894.1\|WP_004467749.1\|464438_465668_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP019894.1\|WP_013449654.1\|446745_447261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_004467748.1\|465779_467261_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP019894.1\|WP_042508284.1\|446161_446731_+\|L-threonylcarbamoyladenylate-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP019894.1\|WP_101034898.1\|447877_447979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_004467760.1\|450970_451420_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP019894.1\|WP_002220009.1\|447426_447849_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_004467774.1\|444825_446097_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP019894.1\|WP_045750147.1\|452387_453290_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	5.53232e-65
NZ_CP019894.1\|WP_003710762.1\|448892_449639_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	3.66122e-111
NZ_CP019894.1\|WP_115119968.1\|462216_464124_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	7.51466e-173
NZ_CP019894.1\|WP_002215152.1\|448098_448278_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000444788
NZ_CP019894.1\|WP_003710770.1\|444373_444667_-\|DUF4298-domain-containing-protein	gnl\|CDD\|372919	pfam14131, DUF4298, Domain of unknown function (DUF4298). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 94 and 105 amino acids in length. There are two completely conserved residues (Y and D) that may be functionally important.	5.55665e-14
NZ_CP019894.1\|WP_004467753.1\|457992_462162_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019894.1\|WP_004467749.1\|464438_465668_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP019894.1\|WP_002227769.1\|453392_454496_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP019894.1\|WP_004467762.1\|449628_450471_-\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	3.02367e-148
NZ_CP019894.1\|WP_003750600.1\|455388_456846_-\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019894.1\|WP_004467759.1\|451694_452183_+\|hypothetical-protein	gnl\|CDD\|379725	pfam15428, Imm26, Immunity protein 26. A predicted immunity protein with mostly all-beta fold and several conserved hydrophobic residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-URI1 or Tox-HNH family. The protein is also found heterogeneous poly-immunity loci.	0.000573121
NZ_CP019894.1\|WP_004467748.1\|465779_467261_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	1.53929e-16
NZ_CP019894.1\|WP_042508284.1\|446161_446731_+\|L-threonylcarbamoyladenylate-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	5.44958e-62
NZ_CP019894.1\|WP_004467760.1\|450970_451420_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.31369e-25
NZ_CP019894.1\|WP_004467766.1\|448283_448871_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	1.28093e-125

>NZ_CP019894.1|WP_004467762.1|449628_450471_-|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSDDSPIRFIEAAPENWLKMGGRARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEDFLKNVDAGRVCYIHIAGHDAENPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEYRRAA
>NZ_CP019894.1|WP_003710762.1|448892_449639_-|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETLQYFDSEEWGRLKEGFVRDARAQTPYFQEIPGEFLQYCQSLPLSDDILALMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNSPDQNHLSA
>NZ_CP019894.1|WP_004467766.1|448283_448871_-|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELMESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NZ_CP019894.1|WP_002215152.1|448098_448278_-|zf-HC2-domain-containing-protein
MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NZ_CP019894.1|WP_101034898.1|447877_447979_-|hypothetical-protein
MYKYAKHEGCINLLYLPYFTDGATPPAQPVLSE
>NZ_CP019894.1|WP_002220009.1|447426_447849_-|hypothetical-protein
MRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNIHTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFDTKNTEISTQSYTASSLRPMSILSGTLTEKQYETVCGKKL
>NZ_CP019894.1|WP_013449654.1|446745_447261_+|hypothetical-protein
MKTFLHTQRKNFSDGISLHDCYCTAIKVERRNVCFDFEDGFVVLNNNPNNQAGKHLKTDFSRVVLTHENENAEDDYLVDIFEDIVFLGKRLFTVRKFLDFSELLEMVNTQGYFLEFLYLYECIGVKTSDYFLEAVLVTGRSRECKKCFIKIIGASSFVYQWNNLRLDNEIV
>NZ_CP019894.1|WP_042508284.1|446161_446731_+|L-threonylcarbamoyladenylate-synthase
MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSESLQAMLRKEWPAPKTFLLSAKSCVLPELRGKQRSKLAVRIPDHAGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR
>NZ_CP019894.1|WP_004467774.1|444825_446097_+|phosphoribosylamine--glycine-ligase
MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQNVALTAHQDLIEFCRKENITFTVVGPEAPLAAGIVDDFRAAGLKIFGPTQYAAQLESSKDFAKAFMAKYNIPTAQYQTFENADAAHGYVNQKGVPIVIKADGLAAGKGVIVAMTLDKAHTAIDDMLLGNKMGNAGARVVIEDFLQGEEASFIVMVDGNHVLPMATSQDHKRLLDGDKGPNTGGMGAYSPAPVVTPAVYERAMNEIILPTVAGMKAEGYEFTGFLYAGLMIDQSGSPYTIEFNCRFGDPETQPIMSRLNSDLADLVEAAIDGKLDSVTAEWSPQTAVGVVLAAQNYPETPKKGDVISGLDAANQIGKVFHAGTTANGKGDVLTNSGRVLCVVGLGDDVVQAKAKAYGALEKISFDGMQYRKDIADKAINR
>NZ_CP019894.1|WP_003710770.1|444373_444667_-|DUF4298-domain-containing-protein
MQKRIDEIQSKYREWCHLLPQLEEDIRRWKHAAALIRDMDNFYTHEYQACHQAIEDGAELDLRTEGEYSIMRKMRYGTRWANPINRLGYIYAPASMP
>NZ_CP019894.1|WP_004467760.1|450970_451420_-|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPILLLLGLATRLSALGLMVVAAIAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLLQGAGGWSLDTLLKKRFCPRCRLKQD
>NZ_CP019894.1|WP_004467759.1|451694_452183_+|hypothetical-protein
MDKGVKKYGKIYEISLPNGKFAYICRVRQYEFGIFDYLSEKTANMDELLSVGFKTYKACIETAIRKKIWKLIGQVDLEKENIIYPDLAIFLSYNKELFIRQSRVIRNGNSLVVSQKDYIDLLKRGYIFGFFDDYKIFELWLSSNVENYPESEGIFPLPSQYL
>NZ_CP019894.1|WP_045750147.1|452387_453290_+|patatin-like-phospholipase-family-protein
MENMVTFSKIRPLLAIAAAVLLAACGTAGNNAARKPVQTAKPAAVVGLALGGGASKGFAHIGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVVFNQGNAGQAVRASAAIPNVFQPVIISGHKYVDGGLSQPVPVSAARRQGANFVIAVDISARPSKNVGQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRLGEEAARAALPEIKRKLAAYRY
>NZ_CP019894.1|WP_002227769.1|453392_454496_+|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NZ_CP019894.1|WP_003750600.1|455388_456846_-|MFS-transporter
MSRHPARTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGTLYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NZ_CP019894.1|WP_004467753.1|457992_462162_-|translocation/assembly-module-TamB
MTDTATTDTDPTENGTRKMPSEHRPAPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTESGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMHRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLDRFETGKISVGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLKGETIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGSFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLDIASDPANGQRKLVFDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRIDPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAALNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTAGLTLDGTGAQHRIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEASAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGARGLHIAELHNFFKPPVEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSNSFSTSPLGGKLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLSGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLNDSIRFAGYGADVTIGGKLTLTAQPGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYGISSAEQSVKLIYRLTRAIQAVARIGSLSSGGELTYTIRFDSLFGSDKKDTAGNGKGK
>NZ_CP019894.1|WP_115119968.1|462216_464124_-|outer-membrane-protein-assembly-factor
MPSEASRPVRTVLKSKAATPIPDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAPDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTLAAVNPDTATADLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSIVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDVDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNADVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NZ_CP019894.1|WP_004467749.1|464438_465668_+|serine/threonine-transporter-SstT
MAFGKSLFHALGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NZ_CP019894.1|WP_004467748.1|465779_467261_+|transferrin-binding-protein-like-solute-binding-protein
MFKRSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAVPVVAEDAGEEVLPKEKKDEEAVGGAPQADTQDATAGEGSQDMAAVSAENTGNGGAATTDKPKNEDAGAQNDMPQNAADTDSLTPNYTTAPNMPAVDMGNQAPDSGESAQPANQPDMANAADGIQGDDPSVGENAGNTADQAENQAENNQVGGSQNPASSTNPNATNGGGDFGRTNVGNSVVIDGPSQNITLTHCKGDSCNDDNLLYEEAPSKSEFESLNDSGRIDKYKKDGQDKFTNLVATKVEKKGLNKYVIFYTDTPPTRSARSRRLRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYRAEKLSGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPSGGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NZ_CP019894.1|WP_002215129.1|467554_467770_-|hypothetical-protein
MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGLFVIILAALLVFGQYFSEKKMKDDGFIN

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Crispr_ID: NZ_CP019894_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_4

457564-457647

Orphan

I-E

Consensus_repeat	Method
CTAGATTCCCGCTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_4

>merge|NZ_CP019894|4|457564-457647|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGGGATGTAGGTTTTCTTAACCCTGCGTCCTAGATTCCCGCTTTCGCGGGAATGACGG

>NZ_CP019894|4|4|457564-457647|CRISPRCasFinder
CTAGATTCCCGCTTTCGCGGGAATGACGG	GATGTAGGTTTTCTTAACCCTGCGTC
CTAGATTCCCGCTTTCGCGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_045750147.1\|452387_453290_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP019894.1\|WP_003710762.1\|448892_449639_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP019894.1\|WP_002218233.1\|467762_467978_-\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NZ_CP019894.1\|WP_115119968.1\|462216_464124_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP019894.1\|WP_002215152.1\|448098_448278_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP019894.1\|WP_004467753.1\|457992_462162_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP019894.1\|WP_004467749.1\|464438_465668_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP019894.1\|WP_002215129.1\|467554_467770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_002227769.1\|453392_454496_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP019894.1\|WP_004467762.1\|449628_450471_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NZ_CP019894.1\|WP_004467759.1\|451694_452183_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379725
NZ_CP019894.1\|WP_004467719.1\|470028_470841_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NZ_CP019894.1\|WP_004467718.1\|470880_471867_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689
NZ_CP019894.1\|WP_003688122.1\|450588_450897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_004467721.1\|468049_469393_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP019894.1\|WP_004467748.1\|465779_467261_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|366565
NZ_CP019894.1\|WP_003750600.1\|455388_456846_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273342
NZ_CP019894.1\|WP_004467720.1\|469552_469939_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_004467760.1\|450970_451420_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP019894.1\|WP_004467766.1\|448283_448871_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171564

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_045750147.1\|452387_453290_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	5.53232e-65
NZ_CP019894.1\|WP_003710762.1\|448892_449639_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	3.66122e-111
NZ_CP019894.1\|WP_002215152.1\|448098_448278_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000444788
NZ_CP019894.1\|WP_115119968.1\|462216_464124_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	7.51466e-173
NZ_CP019894.1\|WP_004467753.1\|457992_462162_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019894.1\|WP_004467749.1\|464438_465668_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP019894.1\|WP_002227769.1\|453392_454496_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP019894.1\|WP_004467762.1\|449628_450471_-\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	3.02367e-148
NZ_CP019894.1\|WP_004467759.1\|451694_452183_+\|hypothetical-protein	gnl\|CDD\|379725	pfam15428, Imm26, Immunity protein 26. A predicted immunity protein with mostly all-beta fold and several conserved hydrophobic residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-URI1 or Tox-HNH family. The protein is also found heterogeneous poly-immunity loci.	0.000573121
NZ_CP019894.1\|WP_004467719.1\|470028_470841_+\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	6.17417e-86
NZ_CP019894.1\|WP_004467718.1\|470880_471867_+\|S49-family-peptidase	gnl\|CDD\|223689	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	8.84813e-78
NZ_CP019894.1\|WP_002218233.1\|467762_467978_-\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	4.40025e-09
NZ_CP019894.1\|WP_004467721.1\|468049_469393_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP019894.1\|WP_004467748.1\|465779_467261_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	1.53929e-16
NZ_CP019894.1\|WP_003750600.1\|455388_456846_-\|MFS-transporter	gnl\|CDD\|273342	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP019894.1\|WP_004467760.1\|450970_451420_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.31369e-25
NZ_CP019894.1\|WP_004467766.1\|448283_448871_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171564	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.	1.28093e-125

>NZ_CP019894.1|WP_003750600.1|455388_456846_-|MFS-transporter
MSRHPARTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIYLYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVMLGHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGTLYEQDEMRPLRDAGFSIFYIAINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSKGQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSSDNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSLWVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFALIVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAGDEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD
>NZ_CP019894.1|WP_002227769.1|453392_454496_+|peptide-chain-release-factor-2
MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV
>NZ_CP019894.1|WP_045750147.1|452387_453290_+|patatin-like-phospholipase-family-protein
MENMVTFSKIRPLLAIAAAVLLAACGTAGNNAARKPVQTAKPAAVVGLALGGGASKGFAHIGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEILGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVVFNQGNAGQAVRASAAIPNVFQPVIISGHKYVDGGLSQPVPVSAARRQGANFVIAVDISARPSKNVGQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRLGEEAARAALPEIKRKLAAYRY
>NZ_CP019894.1|WP_004467759.1|451694_452183_+|hypothetical-protein
MDKGVKKYGKIYEISLPNGKFAYICRVRQYEFGIFDYLSEKTANMDELLSVGFKTYKACIETAIRKKIWKLIGQVDLEKENIIYPDLAIFLSYNKELFIRQSRVIRNGNSLVVSQKDYIDLLKRGYIFGFFDDYKIFELWLSSNVENYPESEGIFPLPSQYL
>NZ_CP019894.1|WP_004467760.1|450970_451420_-|DoxX-family-protein
MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQFPFPFNLLPDALNWNLAMYAELLLPILLLLGLATRLSALGLMVVAAIAWAAVHAGSGYNVCDNGYKMALIYIVVLIPLLLQGAGGWSLDTLLKKRFCPRCRLKQD
>NZ_CP019894.1|WP_003688122.1|450588_450897_-|hypothetical-protein
MNKNIAAALAGALSLSLAAGAVAADKPASNATGVQKSAQGSCGASKSAEGSCGAAASKAGEGKCGEGKCGATVKKAHKHTKASKAKAKSAEGKCGEGKCGSK
>NZ_CP019894.1|WP_004467762.1|449628_450471_-|DUF692-family-protein
MIQHAGLGYRRDLAEDFLSLSDDSPIRFIEAAPENWLKMGGRARKQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGGHLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAVAREADCGIHLDVNNIYVNAVNHGLLSPEDFLKNVDAGRVCYIHIAGHDAENPELLIDTHGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEYRRAA
>NZ_CP019894.1|WP_003710762.1|448892_449639_-|DUF2063-domain-containing-protein
MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETLQYFDSEEWGRLKEGFVRDARAQTPYFQEIPGEFLQYCQSLPLSDDILALMDFEYTQLLAEVAQIPDIPDIHYSNHSKYTPSPAAFIRQYRYDVTDDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNSPDQNHLSA
>NZ_CP019894.1|WP_004467766.1|448283_448871_-|sigma-70-family-RNA-polymerase-sigma-factor
MPLPDLTDAELMESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK
>NZ_CP019894.1|WP_002215152.1|448098_448278_-|zf-HC2-domain-containing-protein
MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQLQTIKRSLAKTTRTSK
>NZ_CP019894.1|WP_004467753.1|457992_462162_-|translocation/assembly-module-TamB
MTDTATTDTDPTENGTRKMPSEHRPAPPAKKRRPLLKLSAALLSVLILAVCFLGWLAGTESGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEGADLKISRFRFAWKPSELMHRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPAAVYLDRFETGKISVGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSASVGLKKPFALDTAIYTKGGLKGETIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHPFAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENTKAGFADRNGIPVRQVLGSFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLNIGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLDIASDPANGQRKLVFDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRIDPQLPAGNINGSINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKTDGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAALNLHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTAGLTLDGTGAQHRIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEASAERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGARGLHIAELHNFFKPPVEHNLVLNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGARFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQIGGRVGSPSVNAAVNGSSNYGKINGNITVGQSNSFSTSPLGGKLNLTVADAEVFRNFLPVGQTVKGSLNAAVTLGGSIADPHLSGSINGDKLYYRNQTQGIILDNGSLRSHIAGRKWVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRYSPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLNDSIRFAGYGADVTIGGKLTLTAQPGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFVGPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGSGSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQLTGKLYIGYEYGISSAEQSVKLIYRLTRAIQAVARIGSLSSGGELTYTIRFDSLFGSDKKDTAGNGKGK
>NZ_CP019894.1|WP_115119968.1|462216_464124_-|outer-membrane-protein-assembly-factor
MPSEASRPVRTVLKSKAATPIPDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFKNKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAPDNVKTMLRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTLAAVNPDTATADLNVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSIVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGIDARLGAEFLAEGRKIPGSDVDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTLGTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNADVPSGLMFRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF
>NZ_CP019894.1|WP_004467749.1|464438_465668_+|serine/threonine-transporter-SstT
MAFGKSLFHALGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLFGSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGMVFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGAALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKLLAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMALAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVATVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAADLGRQRNRAE
>NZ_CP019894.1|WP_004467748.1|465779_467261_+|transferrin-binding-protein-like-solute-binding-protein
MFKRSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAVPVVAEDAGEEVLPKEKKDEEAVGGAPQADTQDATAGEGSQDMAAVSAENTGNGGAATTDKPKNEDAGAQNDMPQNAADTDSLTPNYTTAPNMPAVDMGNQAPDSGESAQPANQPDMANAADGIQGDDPSVGENAGNTADQAENQAENNQVGGSQNPASSTNPNATNGGGDFGRTNVGNSVVIDGPSQNITLTHCKGDSCNDDNLLYEEAPSKSEFESLNDSGRIDKYKKDGQDKFTNLVATKVEKKGLNKYVIFYTDTPPTRSARSRRLRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYRAEKLSGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPSGGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD
>NZ_CP019894.1|WP_002215129.1|467554_467770_-|hypothetical-protein
MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGLFVIILAALLVFGQYFSEKKMKDDGFIN
>NZ_CP019894.1|WP_002218233.1|467762_467978_-|DUF4177-domain-containing-protein
MKEYKVVIYQESLLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVVTMEKDLRRMLLFFKREAYVVILERDRV
>NZ_CP019894.1|WP_004467721.1|468049_469393_-|argininosuccinate-synthase
MSQSHTILQSLPAGQKVGIAFSGGLDTSAALLWMKLKGALPYAYTANLGQPDEDDYNAIPKKAMEYGAENARLIDCRTQLAHEGIAAIQCGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPWLDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVKPIMGVAFWDENVEIKPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQGRWFDSQALMLRETAQRWVAKAITGEVTLELRRGNDYSILNTESPNLTYQPERLSMEKVEDAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLALGEGSVLPQLGNKQ
>NZ_CP019894.1|WP_004467720.1|469552_469939_-|hypothetical-protein
MFAIGIVAFFMFIISLFVCAFVLIAQYLIIRRKIHQDKRAVNFRAKYATLSTFFIQWVVLNAFSFLPANRMIFSLAVFTDILLGFLWLFFVATNADEMWRLTGQKGYLLWPLAAASVWAACFIVFSFG
>NZ_CP019894.1|WP_004467719.1|470028_470841_+|competence/damage-inducible-protein-A
MQDRQHLFNLIIIGDEILHGSRQDKHFTFFKSLLESRGLKLNQVQYLPDEPDLLVKQLRRSFSDGLPTFVTGGIGSTPDDHTRQAAAAALDLPVVRHAQAAGFIEGVTQKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNIAGFSIREHYFFPGFPVMAHPMAEWVLETYYAGRFNQTERGSRSVYVFDQPESRITPIMEHIEQTYPGVRSYSLPSVGWTHSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN
>NZ_CP019894.1|WP_004467718.1|470880_471867_+|S49-family-peptidase
MQYRIRRENEAPEAKNAGETLWERDIMREVLLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFQKDEGALQLTGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADAQKVGLVDGLGNIYSVARDVVKAPDLVDYTRQDDFGTLLGRRLGAELKAGVREALQAVR

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Crispr_ID: NZ_CP019894_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_5

581148-581246

Orphan

Consensus_repeat	Method
GCGGCAGGAATTTATCGGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_5

>merge|NZ_CP019894|5|581148-581246|CRISPRCasFinder
GCGGCAGGAATTTATCGGAAAAACAGCAACCTTTCCGCCGTCATTCCCGCGAAAGCGGGAATCTAGAACCCCTAACGCGGCAGGAATCTATCGGAAAAA

>NZ_CP019894|5|5|581148-581246|CRISPRCasFinder
GCGGCAGGAATTTATCGGAAAAA	CAGCAACCTTTCCGCCGTCATTCCCGCGAAAGCGGGAATCTAGAACCCCTAAC
GCGGCAGGAATCTATCGGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_045750268.1\|570396_571155_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP019894.1\|WP_003713566.1\|583360_583795_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225405
NZ_CP019894.1\|WP_003713561.1\|585472_585796_+\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|234765
NZ_CP019894.1\|WP_003713568.1\|575231_577388_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP019894.1\|WP_002226757.1\|585231_585402_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
NZ_CP019894.1\|WP_002218119.1\|569457_569796_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NZ_CP019894.1\|WP_003713567.1\|581632_583219_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NZ_CP019894.1\|WP_003713556.1\|585828_586248_+\|DUF2251-domain-containing-protein	unknown	unknown	gnl\|CDD\|226766
NZ_CP019894.1\|WP_002245717.1\|579236_580871_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP019894.1\|WP_003713570.1\|572877_573846_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_CP019894.1\|WP_002214868.1\|578853_579144_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP019894.1\|WP_003711156.1\|586269_586776_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_CP019894.1\|WP_003713564.1\|584000_585221_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP019894.1\|WP_036470488.1\|583215_583308_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NZ_CP019894.1\|WP_003713554.1\|590166_595191_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP019894.1\|WP_003713572.1\|571913_572888_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP019894.1\|WP_003713555.1\|586921_589741_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP019894.1\|WP_003713569.1\|574009_574975_-\|siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_CP019894.1\|WP_003713573.1\|571242_571869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225102
NZ_CP019894.1\|WP_003713577.1\|569890_570364_+\|DUF2004-domain-containing-protein	unknown	unknown	gnl\|CDD\|370469

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_045750268.1\|570396_571155_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	1.18375e-159
NZ_CP019894.1\|WP_003713566.1\|583360_583795_-\|hypothetical-protein	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	3.25104e-07
NZ_CP019894.1\|WP_003713561.1\|585472_585796_+\|iron-donor-protein-CyaY	gnl\|CDD\|234765	PRK00446, cyaY, frataxin-like protein; Provisional.	1.39483e-46
NZ_CP019894.1\|WP_003713568.1\|575231_577388_-\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.83118e-141
NZ_CP019894.1\|WP_002226757.1\|585231_585402_-\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	3.19315e-05
NZ_CP019894.1\|WP_002218119.1\|569457_569796_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	4.94465e-56
NZ_CP019894.1\|WP_003713567.1\|581632_583219_+\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NZ_CP019894.1\|WP_003713556.1\|585828_586248_+\|DUF2251-domain-containing-protein	gnl\|CDD\|226766	COG4316, COG4316, Uncharacterized protein conserved in bacteria [Function unknown].	1.85991e-62
NZ_CP019894.1\|WP_002245717.1\|579236_580871_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP019894.1\|WP_003713570.1\|572877_573846_-\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.47087e-139
NZ_CP019894.1\|WP_002214868.1\|578853_579144_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.91348e-50
NZ_CP019894.1\|WP_003711156.1\|586269_586776_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	6.22339e-108
NZ_CP019894.1\|WP_003713564.1\|584000_585221_-\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP019894.1\|WP_036470488.1\|583215_583308_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	0.000559949
NZ_CP019894.1\|WP_003713554.1\|590166_595191_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	0
NZ_CP019894.1\|WP_003713572.1\|571913_572888_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	3.73192e-141
NZ_CP019894.1\|WP_003713555.1\|586921_589741_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP019894.1\|WP_003713569.1\|574009_574975_-\|siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	4.37887e-148
NZ_CP019894.1\|WP_003713573.1\|571242_571869_-\|hypothetical-protein	gnl\|CDD\|225102	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion].	1.38543e-05
NZ_CP019894.1\|WP_003713577.1\|569890_570364_+\|DUF2004-domain-containing-protein	gnl\|CDD\|370469	pfam09406, DUF2004, Protein of unknown function (DUF2004). This is a family of proteins with unknown function. The structure of one of the proteins in this family has revealed a novel alpha-beta fold.	1.64806e-11

>NZ_CP019894.1|WP_002245717.1|579236_580871_+|chaperonin-GroEL
MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVIAEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEEKPAMPDMGGMGGMGGMM
>NZ_CP019894.1|WP_002214868.1|578853_579144_+|co-chaperone-GroES
MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK
>NZ_CP019894.1|WP_003713568.1|575231_577388_-|TonB-dependent-receptor
MNAPLFRLSLLSLTLAAGFAHAAGNANVALDTVTVKGDRQGSKIRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQHMTLRGMGQNSVDIKVDNAYSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLDKNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYSRNDEKDYEAGKGYKSPNGGKTVPYSALDKRSYLAKIGTSFGDGDHRIVLSHMKDQHRGIRTVREEFTIFDSDPTKDRQKPSYRETTQSNTNLEYTGKNLGFVEKLNANAYVLEKKRYSADDKGSGYAGNVEGPNHTRITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNGEFKISDKKKNDDGTEVEVDEAQKAENRKNENIAKAYSLTNPTKTDAGVYVEAIHDIGDFTLTGGLRYDRFKVKTHDGKTVSSSSLNPSFGVIWQPHEYWSFSASHNYASRSPRLYDALQTHGKRGIISIADGIKAERARNTEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVAVREAVNAGYIKNHGYELGASYRTGGLTAKVGVSHSKPRFYDTHPKNLLSANPEFGAQIGRTWTASLAYRFKNPNLEIGWRGRYVQKAVGSILVAGQKDRQGNLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNVFNKYYYPHSQRWTNTLPGVGRDVRLGVNYKF
>NZ_CP019894.1|WP_003713569.1|574009_574975_-|siderophore-ABC-transporter-substrate-binding-protein
MLRLTALTLCTVLALGACSPQNSDSAPQAKEQAVSAAQSEGVSVTVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPAGTLFEPDYEALNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESAKERIDALAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGPSSRLGGWLHKDIGLPAVDESIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLNNPLVAETTAWKKGQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK
>NZ_CP019894.1|WP_003713570.1|572877_573846_-|ABC-transporter-permease
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMVGASQSAALGLLLMTLLLPAAPLLAKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVIEAVATFIAYENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADQLTILGLGETVSVNLGLNRTAILWSGLIIVALITSLVVVTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLGASLVLLCDIVGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAYAV
>NZ_CP019894.1|WP_003713572.1|571913_572888_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MPSENKIEFMQGSPRPLWAASALLLICCGLFLTLNVKGDWDFVLQLRLTKLAALLLVAYAVGVSTQLFQTLTNNPILTPSILGFDALYVFLQTLLVFTFGGVGYASLPLTGKFGFELVVMMGGSLLLFYTLIRQGGRDLPRMILIGVIFGILFRSLSSLLSRMIDPEEFTAAQANMFAGFNTVHSELLGIGALILLVSAAVVWRERYRLDVHLLGRDQAVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLPMTVCVGGILLVGGQTVFEHLLGMQAVLSVVVEFAGGLVFLYLVLKHKK
>NZ_CP019894.1|WP_003713573.1|571242_571869_-|hypothetical-protein
MTQECFPSFFNQAPTITVRDPLAAFLGAAENGILTYRYADAVRLCGHSCPTVAGAYLMVIKGLKALYGEELPERGGIEAAMQGTRDEGTVGVTASVVQLLTGAAPETGFGGIGIQGRFARRNLLSFGAGEINGTLTLRRKDNGKTVAVSLNAALKPFAPEMRELMPKAVGGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV
>NZ_CP019894.1|WP_045750268.1|570396_571155_-|ABC-transporter-ATP-binding-protein
MITIRNVSYRIGTRPILNNISLDIPEGGITALIGPNGAGKSTLFSFMARLRPLESGSIAYRGKNLADTPTAELAKTLSILTQENSIMSRITVRDLLMFGRYPYHQGRPSENDKTIVEEALAEFHLQDFADRYLTELSGGQRQRAMIAMVFCQRTDYVLLDEPLNNLDMYHARCLMQILRRLTDEHKRTTVVVLHDINQAAAYADHVVAMKNGQVALTGTPEEVFTVHNIKELFDMDVDVLDYEGKKLIVHHI
>NZ_CP019894.1|WP_003713577.1|569890_570364_+|DUF2004-domain-containing-protein
MPVSHPYFETLSAGSPENGPDVCWERELPVNGDTVEVCLWTGGDDELTAEKLDAFAAFLARLEEADKMARAAIAEYLTEDGEYLNFHITEIEDADYPDNPEEFARAMRLESISLWTEELPDCDSIVMDYMIDREKSDEILAVKLFADGGICGIDWES
>NZ_CP019894.1|WP_002218119.1|569457_569796_+|P-II-family-nitrogen-regulator
MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRIRTGERSDAAV
>NZ_CP019894.1|WP_003713567.1|581632_583219_+|sodium-dependent-transporter
MFAYNGLFLINNSRGINVSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGGGAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVICIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAGVWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWSKLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAGIGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAGVTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFVNTYGIVAAGFVYVAAIIISGRLPELRRHLNALSSIRVGGLWTACVVFTVVMLGYMLYQDTAGLLEKNYGDYPDGFLNIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQGDEK
>NZ_CP019894.1|WP_036470488.1|583215_583308_+|methionine/alanine-import-family-NSS-transporter-small-subunit
MSTSAIVMMLAAIAVIWGGLLLSLLRLPEE
>NZ_CP019894.1|WP_003713566.1|583360_583795_-|hypothetical-protein
MKHAPIILLLAGLSATLLSAGCSGLPAAQTPLYKLPPAAPIQPANPYSRPPSGTPDGAYSIRSSNGRVLKSIVKNGVFDRFVDIYHPNGKLHSHTPVENGVAQGWSQGYTEQGILRTRILYRDGHIVRAQTLDASGKVEREWQP
>NZ_CP019894.1|WP_003713564.1|584000_585221_-|diaminopimelate-decarboxylase
MTLFCEQVPYPRLAEEFGTPLYVYSQSALTKAFEHYQTAFAALNPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYKDESVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKNISPLTANIVGPICETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVDGGGYRLIRRRETLEQQMANELACL
>NZ_CP019894.1|WP_002226757.1|585231_585402_-|hypothetical-protein
MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQLQSKPQSAPPTQK
>NZ_CP019894.1|WP_003713561.1|585472_585796_+|iron-donor-protein-CyaY
MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGDGTQIIVNRHTPNQELWIAAKSGGYHFAGQNGKWLATRDGRDFYDVLNEALSAASGEAVAIAEL
>NZ_CP019894.1|WP_003713556.1|585828_586248_+|DUF2251-domain-containing-protein
MAQLPLYRTAEIGNFTVGTPKVLESFFEHVPYGVVFEDDGDTGYFYAASKDGILDALHIYNVEDVSDKHIPNHVLILWDDACTLAALCVNDYIHAVYDFVAQAGYCRNGFPEAHEEWVKVENRVLDDELLDKLLSRKST
>NZ_CP019894.1|WP_003711156.1|586269_586776_+|S-ribosylhomocysteine-lyase
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYLMHSLAEAQQIAQNVLARKVAVNKNEELTLDEGLLNA
>NZ_CP019894.1|WP_003713555.1|586921_589741_+|DNA-polymerase-I
MSNRPTLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRLRSEYPHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVIGQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKGKVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGLESLRRTTPKWAQLAVDFKRWGFRTWLKEAESRMHEAADGGLSGSDAIGGKAAPAAEMPSERLPEKAVAPEKLDYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHVFANYGIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNWEEAH
>NZ_CP019894.1|WP_003713554.1|590166_595191_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKTTDKRTTETHRKTPKTGRIRFSPAYLAICLSFGILPQARAGHTYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVAALVGDQYIVSVAHNGGYNNVDFGAEGSNPDQHRFSYQIVKRNNYKPDNSHPYNGDYHMPRLHKFVTDAEPVEMTGDMRGNTYSDKEKYPERVRIGSGHHYWRYDDDKHGDLSYSGAWLIGGNTHMQGWGNNGVVSLSGDVRHANDYGPMPIAGAAGDSGSPMFIYDKTNNKWLLNGVLQTGYPYSGRENGFQLIRKDWFYDDIYRGDTHTVFFEPRSNGHFSFTSNNNGTGTVTETNEKVSNPKLKVQTVRLFDESLNETDTEPVYAAGGVNQYRPRLNNGENLSFIDYGNGKLILSNNINQGAGGLYFEGNFTVSPENNETWQGAGVHISDGSTVTWKVNGVANDRLSKIGKGTLLVQAKGENQGSISVGDGKVILDQQADENNKKQAFSEIGLVSGRGTVQLNADNQFNPDKLYFGFRGGRLDLNGHSLSFHRIQNTDEGAMIVNHNQDKESTVTITGNKDIATTGNNNSLDSKKEIAYNGWFGEKDAAKTNGRLNLVYQPAAEDRTLLLSGGTNLNGNITQTNGKLFFSGRPTPHAYNHLGNGWSKMEGIPQGEIVWDNDWINRTFKAENFHIQGGQAVISRNVAKVEGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCVEKTITDEKVIASLTNTDISGNVSLADHAHLNLTGLATLNGNLSANGDTRYTVSHNATQNGNLSLVGNAQATFNQATLNGNTSASGNASFNLSNNAAQNGSLTLSDNAKANVSHSALNGNVSLADKAIFHFENSRFTGQISGGKDTALHLKDSEWTLPSGTELGNLNLDNATITLNSAYRHDAAGAQTGSAADAPRRRSRRSLLSVTPPTSAESRFNTLTVNGKLNGQGTFRFMSELFGYRSDKLKLAESSEGTYTLAVNNTGNEPVSLEQLTVVEGKDNKPLSENLNFTLQNEHVDAGAWRYQLIRKDGEFRLHNPVKEQELSDKLDQAEKTEAALAAKQAQLAAKQQEEEEKVRLKKAEISDAVPSESELNRLNAELEEAKKQTAAAQAAQAEKEAAWAQAKTAAAEAGRRAEEADAGYRHGNTLEGAENADAANLALAKAQIAEQTAKIDWAEAKLTRLNRIRDEREKAVAAAGEAKALADKIAETAKEKQDLQSMALSLANVKEELVITEAELQNAKAERAGLEAKRALLERRQSDKVQKEQEAQTALTAARQSEAAREGAAEAKKQAEKDNAQSLDALNAAGRDAAEKAESVAELARQAGGENAGIMQAEEEKKRAQTDKDTALEKQREAETRPVTAAFRRARRDLPQPQPQPQRDLISRYANSGLSEFSATLNSVFAVQDELDRVFAEDRRNAVWTSGIRDTKHYRSQDFRAYRQQTDLRQIGMQKNLGSGRVGILFSHNRTENTFDDGIGNSARLAHGAVFGQYGIGRFDIGISAGAGFSSGSLSDGIGGKIRRRVLHYGIQARYRAGFGGFGIEPHIGATRYFVQKADYRYENVNIATPGLAFNRYRAGIKADYSFKPAQHISITPYLSLSYTDAASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIKGFTLSLHAAAAKGPQLEAQHSAGIKLGYRW

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Crispr_ID: NZ_CP019894_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_6

646358-646562

Orphan

I-E

Consensus_repeat	Method
CGTCATTCCCGCACAGGCGGGAATCTAGTCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP019894_6

>merge|NZ_CP019894|6|646358-646562|CRISPRCasFinder
CGTGATTCCCGCGAAAACAGAAACCTAATCCCGCGAAAACAGAAAACCAAAAACAGAAACCTAAAATCTCGTCATTCCTGCAAAAACAGCAACCTAAAACCCCGTCATTCCCGCACAGGCGGGAATCTAGTCCATTCGGTTTCGCTTGTTTTAGGTTTCGGGTAACTTCCACTTCGTCATTCCCGCGCAGGCGGGAATCTAGTCC

>NZ_CP019894|6|6|646358-646562|CRISPRCasFinder
CGTGATTCCCGCGAAAACAGAAACCTAATCC	CGCGAAAACAGAAAACCAAAAACAGAAACCTAAAATCT
CGTCATTCCTGCAAAAACAGCAACCTAAAAC	CCCGTCATTCCCGCACAGGCGGGAATCTAGTCCATTCGGTTTCGCTTGTTTTAGGTTTCGGGTAACTTCCACTT
CGTCATTCCCGCGCAGGCGGGAATCTAGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003712706.1\|637203_637626_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP019894.1\|WP_003708407.1\|652102_652519_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003712690.1\|645450_646257_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP019894.1\|WP_003712682.1\|649680_650427_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP019894.1\|WP_003712676.1\|654582_655509_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP019894.1\|WP_003712687.1\|647057_647783_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP019894.1\|WP_003712684.1\|649003_649489_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|179332
NZ_CP019894.1\|WP_003712696.1\|642569_643409_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NZ_CP019894.1\|WP_002244317.1\|647991_648786_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP019894.1\|WP_078835871.1\|644415_645432_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP019894.1\|WP_045750187.1\|655534_655906_-\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|225863
NZ_CP019894.1\|WP_002223091.1\|637983_638889_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP019894.1\|WP_003712680.1\|650488_652054_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP019894.1\|WP_003712672.1\|655952_656915_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP019894.1\|WP_003712702.1\|639396_641460_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP019894.1\|WP_003712695.1\|643420_644356_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037
NZ_CP019894.1\|WP_003712707.1\|634881_635757_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP019894.1\|WP_002223090.1\|638965_639376_+\|DUF469-family-protein	unknown	unknown	gnl\|CDD\|225712
NZ_CP019894.1\|WP_003708440.1\|635795_637193_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP019894.1\|WP_003712678.1\|652576_654445_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003712706.1\|637203_637626_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.5568e-50
NZ_CP019894.1\|WP_003712690.1\|645450_646257_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	3.59506e-90
NZ_CP019894.1\|WP_003712682.1\|649680_650427_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.73041e-132
NZ_CP019894.1\|WP_003712676.1\|654582_655509_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	8.93675e-128
NZ_CP019894.1\|WP_003712687.1\|647057_647783_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.15998e-94
NZ_CP019894.1\|WP_003712684.1\|649003_649489_-\|YchJ-family-protein	gnl\|CDD\|179332	PRK01752, PRK01752, YchJ family protein.	2.05697e-97
NZ_CP019894.1\|WP_003712696.1\|642569_643409_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	5.25732e-88
NZ_CP019894.1\|WP_002244317.1\|647991_648786_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	6.4586e-84
NZ_CP019894.1\|WP_078835871.1\|644415_645432_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.036e-38
NZ_CP019894.1\|WP_045750187.1\|655534_655906_-\|DUF1294-domain-containing-protein	gnl\|CDD\|225863	COG3326, COG3326, Predicted membrane protein [Function unknown].	1.35936e-27
NZ_CP019894.1\|WP_002223091.1\|637983_638889_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP019894.1\|WP_003712680.1\|650488_652054_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP019894.1\|WP_003712672.1\|655952_656915_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NZ_CP019894.1\|WP_003712702.1\|639396_641460_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP019894.1\|WP_003712695.1\|643420_644356_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	1.07886e-96
NZ_CP019894.1\|WP_003712707.1\|634881_635757_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	6.39204e-144
NZ_CP019894.1\|WP_002223090.1\|638965_639376_+\|DUF469-family-protein	gnl\|CDD\|225712	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown].	4.30393e-49
NZ_CP019894.1\|WP_003708440.1\|635795_637193_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP019894.1\|WP_003712678.1\|652576_654445_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0

>NZ_CP019894.1|WP_003712690.1|645450_646257_+|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGARGIPFQFFDALMPSERLEQAMAELVPGLSAHPYLSSVEKACFMSHVVLWKQALDEGVPYVAVFEDDVLLGERAEKFLDEDAWLQERFDKDSAFIVRLETMFMHVLTSPSGVADYGGRAFPLLESEHWGTAGYIISRKAMRFFLDRFAVLPSERLKAVDWMLFSSFLDKGGMTVCQLTPALCIQSETLPSQLKNGRQESYRNRRSPKVLLKRALGKIGREIERARERKRQKKLEKHLGRHVVPFE
>NZ_CP019894.1|WP_078835871.1|644415_645432_+|glycosyltransferase-family-2-protein
MQPLVSVLICAYNTEKYFAQSLAAVVNQTWRNLDILIVDDGSTDGTLAIARRFQEQDGRIRIISNPRNLGFIASLNIGLDELAKSGGGGEYIARTDADDIAAPDWIEKIVGEMEKDADIVAMGSYLEILAEENNKSVLAAIARNGEIWKNPLTHQEITSAFPFRNPIHNNTMIMRRSVIDGGLRFNPAYIHAEDYKFWYDVSKLGRLANYPEALVKYRFHQDQTSSKYNLQQRRTAWKIKEEIRAGYWKAAGIAVGADCLNYGLLKSTAYTLHEKALSGQDIGYLRLFLYEYFLSLEKYSLTDLLDFLTDRVMRKLFAAPQYRKILKKMLRPWKYRSY
>NZ_CP019894.1|WP_003712695.1|643420_644356_+|glycosyltransferase-family-8-protein
MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFYVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFTGFPLNIRHISITTYARLKLGEYIADCDKVLYLDTDVLVRDSLKPLWDTDLGGNWVGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAVSLTTVPEEWRGKLAVPHRMFPTKRMLQRWRRKLSARFLRKIY
>NZ_CP019894.1|WP_003712696.1|642569_643409_+|glycosyltransferase-family-25-protein
MQNHVISLASAAERRAHIADTFGARGIPFQFFDALMPSERLEQAMAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLAEDAWLQERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISRKAMRFFLDRFAALPSEGLHPVDWMMFGNPDDREGMPVCQLNPALCAQELHYAKFHDQNSALGSLIEHDRLLNRKQQRRDSPANTFKHRLIRALTKISREREKRRQRREQTIGKIIVPFQ
>NZ_CP019894.1|WP_003712702.1|639396_641460_+|glycine--tRNA-ligase-subunit-beta
MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGAAELTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAVKDGAPTKALEGFARGAGAKIEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINQAVKKLPIPKVMRWGSSTFTFVRPVHGLIVLHGGDVVNVSVLGLQSGNKTLGHRFLSNGEITIENADSYAEQMREQGKVEASFAERKAAIQTALEGQARRLNATVAADEALLDEVTALVEWPVVLEAGFEEHFLAVPQECLILTMQQNQKYFPLLNQNGKLMNRFLLVSNLQTEDPSHIIRGNERVLRARLSDAEFFYKQDQKATLESRLPKLSSVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAARLAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAVEQHYQPRFAGDKLPESKIAAAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFDSFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVVAVLAKQPRRLDDLTAKLQAVAAFKQLPEAAALAAANKRVQNLLKKADAALGEVDESLLQQDEEKALFAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADIALLGE
>NZ_CP019894.1|WP_002223090.1|638965_639376_+|DUF469-family-protein
MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAEDDAEAFGRFMDELIAYLAVNGLEMAGGGDCGDFSCLFQKSGTRSLGETEKKAIISWLAGREDVATLYATPLVDGFYGDDGWESYSETYKQAD
>NZ_CP019894.1|WP_002223091.1|637983_638889_+|glycine--tRNA-ligase-subunit-alpha
MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRALGPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGIDPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITYGIERLAMYLQGVENVYDLVWAKTPDGNTVSYGDVYHQNEVEQSTYNFEYSDADWLLRQFNDYEAQAKRLLAVEGASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRALSRAVAQKYVESREKLGFPLMKANAA
>NZ_CP019894.1|WP_003712706.1|637203_637626_+|F0F1-ATP-synthase-subunit-epsilon
MSIMQVEVVSSEHNIYSGEAGFVVVPTVQGELGIYPRHEPIMSLVRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDRARAEEAKKAAEAGISQAKDNKDLAEAHKALAAAIAQLKTLDYIRSHKK
>NZ_CP019894.1|WP_003708440.1|635795_637193_+|F0F1-ATP-synthase-subunit-beta
MSQGKIVQVIGAVVDVEFPRDAIPHVYDALKLDENGLTLEVQQLLGDGVVRTIAMGSSDGLKRGMSVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQTAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDKLTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYMVGSIEEAVEKAKTLN
>NZ_CP019894.1|WP_003712707.1|634881_635757_+|F0F1-ATP-synthase-subunit-gamma
MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQDRMRLARPYAEKVRTVMSHLAQTNADHGIKLLEPRSEVRRAGFILITSDKGLCGGLNANVLKKFLAQVQEYQEQGIEVEVVCLGSKGLAACQSIGLNVIASAANLGDTPKMEALLGPLTEIFRRYEKHELDRIHMVYSRFINTMRQEPRMEVLLPIGENVIDDEAGHSSFTWEYLYEPSPVAVLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAAITTELSEIVAGAAAV
>NZ_CP019894.1|WP_003712687.1|647057_647783_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPRFHLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFDGKGKAHAAQLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKRILRTETAPLAALAAMQTLWGDFA
>NZ_CP019894.1|WP_002244317.1|647991_648786_+|inositol-monophosphatase-family-protein
MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQTAFAAALPLLIDSPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAVSVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIKYLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIFEEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVGWIRENQ
>NZ_CP019894.1|WP_003712684.1|649003_649489_-|YchJ-family-protein
MNTHHTPPCPCGSGTSYAGCCRPLHLRHILPATAETLMRARYSAYVLHLIDYIVATTVPAQQAFLDAAELMQWSIETEWLGLDVIAHRNFGKQHAQVEFEAYFRDGQHRSAHHELSGFVNIGGQWYFIDPTVPHPAMKQPCICGSGKKFKACCGKYLQPVA
>NZ_CP019894.1|WP_003712682.1|649680_650427_-|3-oxoacyl-ACP-reductase-FabG
MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESGAAAISGRLAQWGGEGRALDSAEPETIENLIADIEKTFGKLDILVNNAGITRDNLLMRMKEEEWDDIMQVNLKSVFRASKAVLRGMMKQRSGRIINITSVVGVMGNAGQTNYAAAKAGLIGFAKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQAFTAQTALGRFGDAQDIADAVLFLASDQAKYITGQTLHVNGGMLMP
>NZ_CP019894.1|WP_003712680.1|650488_652054_-|glutamine-hydrolyzing-GMP-synthase
MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKAFNPKGIILSGGPNSVYESDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVQPGNQREFGYAQVKTIDSELTRGIQDDTPNTLDVWMSHGDKVSKLPDGFAVIGDTPSCPIAMMENAEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPGWTMPNYIEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIESAGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTPWYDLTSQAFAVFLPVKSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGKVSNRIINEVKGINRVVYDVSGKPPATIEWE
>NZ_CP019894.1|WP_003708407.1|652102_652519_-|hypothetical-protein
MKHTLLAVTGAIFLLGACSSRTYIKTGKPEDIAQIKHICIIPNSKSTPPAYHQELAASLSARGISSETVTLGDRRLYSPECKYNLRYHSTGNTKQIKKISVLIRTPQYEVKRIKYTAKNSDDTIGQQTDAVVSLLLAH
>NZ_CP019894.1|WP_003712678.1|652576_654445_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIIAALIAIFGVAATESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVPLFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLMNMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRYYRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSKKITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKSLANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKALDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIENADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISKKDAAAVQTA
>NZ_CP019894.1|WP_003712676.1|654582_655509_-|ACP-S-malonyltransferase
MSFAFFFPGQGSQSLGMMNGFAGHAVVKNTFAEASAILGQDLWAMINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAEALDFADAVKLVRLRAELMQSAVPQGVGAMAAILGLEDEQVKQICAESAQDEVVEAVNFNSPGQVVIAGNAAAVERAMLAAKEAGAKRALPLPVSVPSHCSLMKPAAEKLAEALKSVVIKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPGKVLAGLAKRINKAAACSALTDAGQVAAFIEAH
>NZ_CP019894.1|WP_045750187.1|655534_655906_-|DUF1294-domain-containing-protein
MKRPTLLKPIACAAFLPAVSMFFPILGACYSILSLYTFALYGIDKRRAVQGKYRIPEYCLLLPALFGGWTGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLATCILIDYFVPPELFVKLGQHL
>NZ_CP019894.1|WP_003712672.1|655952_656915_-|ketoacyl-ACP-synthase-III
MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRHIAAENEKTSDLAAEAARRALDAAGLNGSEIDLIIVATATPDMQFPSTATIVQQKLGITNGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFGDGAGAVVLSASDTPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKFAVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVILTVQDHGNTSAASIPLALDAGIRNGQIKRGQNLLLEGIGGGFAWGAVLLQY

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Crispr_ID: NZ_CP019894_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_7

966181-966943

Unclear

Consensus_repeat	Method
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	PILER-CR
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CRISPRCasFinder
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CRT

11 spacers

cas2,cas1

The CRISPR arrays of NZ_CP019894_7

>merge|NZ_CP019894|7|966181-966943|PILER-CR,CRISPRCasFinder,CRT
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACTTTGCGGTTGGAACAACATTGACCGGATTCTTGATCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACCATTGGATGACACTCGGATTGCTGTCGCACCATATCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACTTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCGTCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACCTGTCCGTGGCGTAAGAACCACTACATAGGCGGCATCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACCAAAGTACGAATGGGATTACCTGTTTGGGAAATGTCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACAATCTCTTGAGAAAAAGCAGGAACAAAAAAAGCGTCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACCCAACAGGGAACGCCATTGAAGGAAATCACAAAGGTCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACGGGCTAAGGTCGTCAAAATCTTTAGCCCATTGTGCTCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACAGATTATAGGGGGCATAAATTCAAGTCGGCTAAAGTCAGCCGCCTCTAGGCGGCTGTGTGTTGAAACTGAAACTGCGAAGCCAACCCCCCTTACTAACAGGGTCAGCCGCATCTAGGCGGCTGTGTGTTGAAACAAGGCAGAAATTGATTTTGATTTCGTCACCAACTCAGCCGCCTCTGGGCGGCTATGTGTTGAAAC

>NZ_CP019894|7|1|966181-966943|PILER-CR
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTGCGGTTGGAACAACATTGACCGGATTCTTGA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CATTGGATGACACTCGGATTGCTGTCGCACCATA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CAAAGTACGAATGGGATTACCTGTTTGGGAAATG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AATCTCTTGAGAAAAAGCAGGAACAAAAAAAGCG
TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC	CCAACAGGGAACGCCATTGAAGGAAATCACAAAGG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	GGGCTAAGGTCGTCAAAATCTTTAGCCCATTGTGC
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AGATTATAGGGGGCATAAATTCAAGTCGGCTAAAG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG
TCAGCCGCATCTAGGCGGCTGTGTGTTGAAAC	AAGGCAGAAATTGATTTTGATTTCGTCACCAAC
TCAGCCGCCTCTGGGCGGCTATGTGTTGAAAC

>NZ_CP019894|7|7|966181-966943|CRISPRCasFinder
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTGCGGTTGGAACAACATTGACCGGATTCTTGA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CATTGGATGACACTCGGATTGCTGTCGCACCATA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CAAAGTACGAATGGGATTACCTGTTTGGGAAATG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AATCTCTTGAGAAAAAGCAGGAACAAAAAAAGCG
TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC	CCAACAGGGAACGCCATTGAAGGAAATCACAAAGG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	GGGCTAAGGTCGTCAAAATCTTTAGCCCATTGTGC
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AGATTATAGGGGGCATAAATTCAAGTCGGCTAAAG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG
TCAGCCGCATCTAGGCGGCTGTGTGTTGAAAC	AAGGCAGAAATTGATTTTGATTTCGTCACCAAC
TCAGCCGCCTCTGGGCGGCTATGTGTTGAAAC

>NZ_CP019894|7|1|966181-966943|CRT
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTGCGGTTGGAACAACATTGACCGGATTCTTGA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CATTGGATGACACTCGGATTGCTGTCGCACCATA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	CAAAGTACGAATGGGATTACCTGTTTGGGAAATG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AATCTCTTGAGAAAAAGCAGGAACAAAAAAAGCG
TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC	CCAACAGGGAACGCCATTGAAGGAAATCACAAAGG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	GGGCTAAGGTCGTCAAAATCTTTAGCCCATTGTGC
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	AGATTATAGGGGGCATAAATTCAAGTCGGCTAAAG
TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG
TCAGCCGCATCTAGGCGGCTGTGTGTTGAAAC	AAGGCAGAAATTGATTTTGATTTCGTCACCAAC
TCAGCCGCCTCTGGGCGGCTATGTGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003714716.1\|961768_962488_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP019894.1\|WP_003713818.1\|973428_973920_-\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
NZ_CP019894.1\|WP_003714720.1\|960251_960677_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP019894.1\|WP_003713808.1\|978855_979302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003713813.1\|975970_976468_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP019894.1\|WP_045750288.1\|967164_969390_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|375201
NZ_CP019894.1\|WP_003713816.1\|974019_975564_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP019894.1\|WP_114936045.1\|975711_975900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714722.1\|959623_960106_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003713823.1\|969386_972221_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273799
NZ_CP019894.1\|WP_155270577.1\|963574_963724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_155114604.1\|963713_964031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714712.1\|964629_965643_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP019894.1\|WP_002238889.1\|961278_961602_-\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|227196
NZ_CP019894.1\|WP_003713809.1\|977549_978824_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP019894.1\|WP_003713811.1\|976460_977537_-\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|274041
NZ_CP019894.1\|WP_003713820.1\|972743_973370_-\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
NZ_CP019894.1\|WP_003714718.1\|960754_961231_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP019894.1\|WP_002255820.1\|962534_963458_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP019894.1\|WP_003714710.1\|965697_965991_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003714716.1\|961768_962488_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	5.67898e-100
NZ_CP019894.1\|WP_003713818.1\|973428_973920_-\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	1.30122e-92
NZ_CP019894.1\|WP_003714720.1\|960251_960677_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	9.65984e-46
NZ_CP019894.1\|WP_003713813.1\|975970_976468_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	1.09977e-27
NZ_CP019894.1\|WP_045750288.1\|967164_969390_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|375201	pfam17484, TbpB_A, N-Lobe handle Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. The 4-residue conserved LSAC motif found at the amino terminus of TbpB represents a prototypical lipobox, with the cysteine residue serving as the first amino acid in the mature protein which is subsequently modified by the addition of a diacyl glycerol. A second conserved motif of interest is located two amino acids downstream of the LSAC site. This region consists of four glycine residues in tandem. Deletion of the conserved polyglycine motif has significant negative effects on growth in certain conditions, while mutational analysis revealed that the LSAC motif constituting the lipobox of TbpB is necessary for lipidation and hence tethering of TbpB to the bacterial surface. This domain family is found on the N-terminal region of TbpB proteins, which comprises the N lobe handle consisting of a four-stranded antiparallel beta sheets held together by a short surface-exposed alpha helix. Tf-binding activity primarily resides in the TbpB N lobe.	3.82331e-32
NZ_CP019894.1\|WP_003713816.1\|974019_975564_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP019894.1\|WP_003713823.1\|969386_972221_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NZ_CP019894.1\|WP_003714712.1\|964629_965643_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP019894.1\|WP_002238889.1\|961278_961602_-\|DUF2185-domain-containing-protein	gnl\|CDD\|227196	COG4859, COG4859, Uncharacterized protein conserved in bacteria [Function unknown].	1.15386e-53
NZ_CP019894.1\|WP_003713809.1\|977549_978824_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.68349e-171
NZ_CP019894.1\|WP_003713811.1\|976460_977537_-\|cell-division-protein-FtsN	gnl\|CDD\|274041	TIGR02223, Cell_division_protein_FtsN, cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division].	2.22559e-33
NZ_CP019894.1\|WP_003713820.1\|972743_973370_-\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	9.84238e-100
NZ_CP019894.1\|WP_003714718.1\|960754_961231_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	2.66121e-64
NZ_CP019894.1\|WP_002255820.1\|962534_963458_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	3.78079e-161
NZ_CP019894.1\|WP_003714710.1\|965697_965991_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.38539e-32

>NZ_CP019894.1|WP_003714710.1|965697_965991_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDISLENAEGQARLRRVAKLCQDYGVRVQYSVFECDIAPDQWVVLKDKLLKTYNPETDSLRFYHLGSKWRRKVEHHGAKPAVDIFKDTLIV
>NZ_CP019894.1|WP_003714712.1|964629_965643_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHSIGHIFCFGNVLVSPFLLGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRMSEQNPVPIARNIIAAKIQAGKRVLQRQIRNHGGNADIQTAVAALNFSLQQLKRADSLDLIRGIEGDAAARYFGVFGQLVKAESGFAFDGRNRRPPRDSVNALLSFLYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFIVEAGGAVSLKADARKLLFQSLQAKKQEKITHPFLGEEVEIGLLPYIQAMLLARHLRGDLSAYPPFLMR
>NZ_CP019894.1|WP_155114604.1|963713_964031_+|hypothetical-protein
MPSEVCSDGICVLGQVRPVTENICFDGVFRSAIKAAAVTRAYQAHPISGRQSGRRTAAEIDGTDFAASLTDSGSAMILSVQTRLQPPFQALRQKPQWLAQNGICG
>NZ_CP019894.1|WP_155270577.1|963574_963724_+|hypothetical-protein
MPAEDFGYNGNNAACTASDGMQAPSSAHYSALSSKEGIEAAEKISANAV
>NZ_CP019894.1|WP_002255820.1|962534_963458_+|GTPase-Era
MDIETFLAGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADDIRFLRELGL
>NZ_CP019894.1|WP_003714716.1|961768_962488_+|ribonuclease-III
MKDDVLKQQAHAAIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPLKKKKK
>NZ_CP019894.1|WP_002238889.1|961278_961602_-|DUF2185-domain-containing-protein
MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGWRFFSGDETDEYTDDPDNFSIVSLADITKTNPETAALLSQPEGSAWELAEDGTFQTVADWQPQD
>NZ_CP019894.1|WP_003714718.1|960754_961231_-|6,7-dimethyl-8-ribityllumazine-synthase
MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVADENITVATVPGALEIPIALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGIGRVALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE
>NZ_CP019894.1|WP_003714720.1|960251_960677_-|transcription-antitermination-factor-NusB
MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADEELFNKLFFGTQTNAAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPNEPKRR
>NZ_CP019894.1|WP_003714722.1|959623_960106_+|hypothetical-protein
MSYLNLDDDMYLVYDFKQDMTNRRTKEYIENTRLLSLNDESIFGIKKDKGLFASDEWWANIDSGQIITRSVSGVISSIYEAGMERRNIPNSFSFIDGKGIVRNESMYMMNKSDRHLFCEGKKIAIFYAYDELKISKQKKGDVIDLENNYVEQVIEMAISK
>NZ_CP019894.1|WP_045750288.1|967164_969390_+|transferrin-binding-protein-like-solute-binding-protein
MCKLNYGGIALLPLMLAACGGNFGVQPVAKPTPIAQTPSDSKPSKPEDVPTPPPAKPSIETTPVNQPAVGAAMRLPRRNIASYKQDGTEIPDKHQAEEHLPLKEKDILFLDGTLKEQADKLKKKINERYSDVRVITSKKEEEKYQYQFVRAGYVFTRAEGKDNEKEKTSDGKEFVNRFSYDGFVYYSGERPSQSLPSAGTVQYSGNWQYMTDAKRHRTGKAVSSTDLGYTTYYGNEIGATSYEARDADDREKHPAEYTVDFDNKTLNGKLIKNQYVQNKSNPNEPKKPLTIYDITAKLDGNRFTGSAKVNTEVKKSHADKEYLFFHTDADQRLEGGFFGDKGEELAGRFISNDNSVFGVFAGRQKTDASNASGTNPAMPSEKHTKILDSLKISVDEAADEKARTFAISSMPDLGHPDKLLVEGREIPLVNQEKTINLADGRKMTVRACCDFLTYVKLGRIKTDRPASKPKAEDKREDEESAGVDNGEEGTEDEAAEGSEGAEDEIGDEEEGTGDEAVEGEDGEEDEGEEAEEPEEESPAEGGGGSDGILPAPEAPKGRDIDLFLKGIRTAEADIPKTGTAHYTGTWEARISKPIQWDNKADKAAKAEFNVDFGKKSISGTLTEKNGVEPAFRIENGVIDGNGFHATARTRDNGINLSGNGSTNPQSFKADNLLVTGGFYGPQAEELGGTIFNNDGKSLDITEDTENEAEAEAGVDEQLEPEAKPQFGVVFGAKKDNKEVEK
>NZ_CP019894.1|WP_003713823.1|969386_972221_+|lactoferrin/transferrin-family-TonB-dependent-receptor
MNKKHGFPLTLTALAIATAFPAYAAQAGGATPDAAQTQSLKEVTVRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYSIRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAGSSDHGSGALGGAVAFRTKEAADLISDGKSWGVQAKTAYGSKNRQFMKSLGAGFSKDGWEGLLIRTERQGRETRPHGDIADGVEYGIDRLDAFRQTYDIQKQNKKAEYFLAEGEREPKPVAKLAGNGNYLKNQLNRWVEERKKNNQPLSAEEEAMVREAQARHENLSAQAYTGGGRILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDEAKKFSDKSGVYDGDDFRDGLYFRPNIEEWKGDTNLVKGIGLKYSRTKFIDEHHRRRRMGLLYRYENEAYSDNWADKTVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSSDRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAISRPEQLSHNAARISESTGFDDNNQDKYLLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYFDFSLGGRYDRQNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSVSYRASSGFRTPSFQELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVADQKTKLPDSTGRLTEIDIRDYYNAQNMSLQGINILGKIDWNGVYGKLPEGLYTTLAYNRIKPKSVSNRPDLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELAYLAGDQKRYSAGRVTSSWKTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAESTANRRSEDSNYGRYAAPGRNFSLALEMKF
>NZ_CP019894.1|WP_003713820.1|972743_973370_-|phosphoribosylanthranilate-isomerase
MRKIRTKICGITTPEDASNAAAAGADAVGLVFFQGSSRAVDIARAKEIAAALPPFVSVVALFVNESVQNIRRILAEVPIHIIQFHGDEDDAFCRQFHRPYIKAIRVQTASDIRNATHRFPNAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGGLTPENVGEAVRITGAESVDVSGGVEASKGKKDPAKVAAFIATANHLSR
>NZ_CP019894.1|WP_003713818.1|973428_973920_-|transcription-elongation-factor-GreB
MSTETKNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYVKID
>NZ_CP019894.1|WP_003713816.1|974019_975564_-|amidophosphoribosyltransferase
MCGVLGLVSHEPVNQLLYDGLQMLQHRGQDAAGIVTAEGGTFHMHKGKGMVREVFRTRNMRDLTGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHNGNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNIDNIFNAVAEVHRLVRGAYGVVAMIAGYGMVAFRDPYGIRPLALGSQTDEAGRKSYAVASESVAFNALAYDLERDIRPGEAVFVGFDGTIIARQCSDKAKLSPCLFEYVYFARPDSVIDGVSVYQSRLDMGVSLAEKIKRELPVDDIDVVMPIPDTSRPSAMELAVHLKKPYREGLIKNRYIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAGARKVYIASAAPEVRYPNVYGIDMPTREELIANGRSAAEIAAEIGADGIVFQDLGDLETVVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISISDAGDEE
>NZ_CP019894.1|WP_114936045.1|975711_975900_+|hypothetical-protein
MRQGKYFPQKCRLKVSDGIFYAVSAAVCGSPKPPAAASARSHIKEGGTRYTGHILGGCVFNV
>NZ_CP019894.1|WP_003713813.1|975970_976468_-|CvpA-family-protein
MNSLPVADLLVSAVIAACILISAMRGVIAEAGSLAAWVIAFFFAKLFAAPFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTQAVSAVGLGFANRILGGVFGALKGVLIVTLLVMPASKTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGGTAETLEDD
>NZ_CP019894.1|WP_003713811.1|976460_977537_-|cell-division-protein-FtsN
MSENKQNEVLTGYEQLKRRNRRRLVTASCLVAASCILLAAALSSDPADSNPAPQAGETGATENQTANAAQAPALKSAAGNGETAAGKPQDAAGGGKPADDGGISEPEDIGAPLVIINNRLDDSNIKGLEASAKPQPQEAAEKPQPEETAATAQAEAKQGAAEKAQAPADNKDTAEKPKPAAEPKPQKTERAAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDKPVKEPKKSDKAESKKPAEKDSSDGKKHETAQKTDKADKAKTAGQGKTAEKEKSDKTGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE
>NZ_CP019894.1|WP_003713809.1|977549_978824_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAVNAEPVSDDTITASFERIEAERGDISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAVNVFDGDCAVVTSVDLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVAHAETIGAKLLMVQRDFEFHAMENIQWNYRFHPQHSDDRARNRNALPFPALRGAYQLSNAACALTVLECLNDKLPADIGAIKRGLLLVENLGRFQVLPGRPLTVLDVGHNPHAARALRRSLMNLAFAQKRTAVFSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQDKLHEHGIENIQTFAAVREAYRAAASKAGENDRIVVFGSFHTVADVMSVL
>NZ_CP019894.1|WP_003713808.1|978855_979302_-|hypothetical-protein
MRAFQTALKPSRILNILTISLHSVSIAVCLTWFYGRMMWFGLAALLASFIHSLRITNLKNRRAVTAVIIDRDGRAEIISGKEKTAKAAALSGSSMVTPYALFLQWDTGGKTVRHCITPDMADKESYRRLKVWVLWRQPKKTAETDTPS

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Crispr_ID: NZ_CP019894_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_8

972404-972501

Unclear

I-E

Consensus_repeat	Method
GGATTCCCGCTTGCGCGGGAATGACG	CRISPRCasFinder

1 spacers

cas2,cas1

The CRISPR arrays of NZ_CP019894_8

>merge|NZ_CP019894|8|972404-972501|CRISPRCasFinder
GGATTCCCGCTTGCGCGGGAATGACGATTCATCAGTTTCCCGAAATGCCGACATAACCGAACCGAACGAGCCGGATTCCCGCTTGCGCGGGAATGACG

>NZ_CP019894|8|8|972404-972501|CRISPRCasFinder
GGATTCCCGCTTGCGCGGGAATGACG	ATTCATCAGTTTCCCGAAATGCCGACATAACCGAACCGAACGAGCC
GGATTCCCGCTTGCGCGGGAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003714716.1\|961768_962488_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP019894.1\|WP_003713803.1\|979738_980467_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP019894.1\|WP_003713818.1\|973428_973920_-\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
NZ_CP019894.1\|WP_003713808.1\|978855_979302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003713813.1\|975970_976468_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP019894.1\|WP_045750288.1\|967164_969390_+\|transferrin-binding-protein-like-solute-binding-protein	unknown	unknown	gnl\|CDD\|375201
NZ_CP019894.1\|WP_114936045.1\|975711_975900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003713816.1\|974019_975564_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP019894.1\|WP_003713823.1\|969386_972221_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273799
NZ_CP019894.1\|WP_155270577.1\|963574_963724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_155114604.1\|963713_964031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714712.1\|964629_965643_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP019894.1\|WP_002238889.1\|961278_961602_-\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|227196
NZ_CP019894.1\|WP_003713809.1\|977549_978824_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP019894.1\|WP_003713806.1\|979306_979666_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003713811.1\|976460_977537_-\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|274041
NZ_CP019894.1\|WP_003713820.1\|972743_973370_-\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
NZ_CP019894.1\|WP_003714718.1\|960754_961231_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP019894.1\|WP_002255820.1\|962534_963458_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP019894.1\|WP_003714710.1\|965697_965991_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003714716.1\|961768_962488_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	5.67898e-100
NZ_CP019894.1\|WP_003713818.1\|973428_973920_-\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	1.30122e-92
NZ_CP019894.1\|WP_003713813.1\|975970_976468_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	1.09977e-27
NZ_CP019894.1\|WP_045750288.1\|967164_969390_+\|transferrin-binding-protein-like-solute-binding-protein	gnl\|CDD\|375201	pfam17484, TbpB_A, N-Lobe handle Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. The 4-residue conserved LSAC motif found at the amino terminus of TbpB represents a prototypical lipobox, with the cysteine residue serving as the first amino acid in the mature protein which is subsequently modified by the addition of a diacyl glycerol. A second conserved motif of interest is located two amino acids downstream of the LSAC site. This region consists of four glycine residues in tandem. Deletion of the conserved polyglycine motif has significant negative effects on growth in certain conditions, while mutational analysis revealed that the LSAC motif constituting the lipobox of TbpB is necessary for lipidation and hence tethering of TbpB to the bacterial surface. This domain family is found on the N-terminal region of TbpB proteins, which comprises the N lobe handle consisting of a four-stranded antiparallel beta sheets held together by a short surface-exposed alpha helix. Tf-binding activity primarily resides in the TbpB N lobe.	3.82331e-32
NZ_CP019894.1\|WP_003713816.1\|974019_975564_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP019894.1\|WP_003713823.1\|969386_972221_+\|lactoferrin/transferrin-family-TonB-dependent-receptor	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NZ_CP019894.1\|WP_003713803.1\|979738_980467_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.02941e-161
NZ_CP019894.1\|WP_003714712.1\|964629_965643_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP019894.1\|WP_002238889.1\|961278_961602_-\|DUF2185-domain-containing-protein	gnl\|CDD\|227196	COG4859, COG4859, Uncharacterized protein conserved in bacteria [Function unknown].	1.15386e-53
NZ_CP019894.1\|WP_003713809.1\|977549_978824_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.68349e-171
NZ_CP019894.1\|WP_003713811.1\|976460_977537_-\|cell-division-protein-FtsN	gnl\|CDD\|274041	TIGR02223, Cell_division_protein_FtsN, cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division].	2.22559e-33
NZ_CP019894.1\|WP_003713820.1\|972743_973370_-\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	9.84238e-100
NZ_CP019894.1\|WP_003714718.1\|960754_961231_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	2.66121e-64
NZ_CP019894.1\|WP_002255820.1\|962534_963458_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	3.78079e-161
NZ_CP019894.1\|WP_003714710.1\|965697_965991_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.38539e-32

>NZ_CP019894.1|WP_003713823.1|969386_972221_+|lactoferrin/transferrin-family-TonB-dependent-receptor
MNKKHGFPLTLTALAIATAFPAYAAQAGGATPDAAQTQSLKEVTVRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYSIRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAGSSDHGSGALGGAVAFRTKEAADLISDGKSWGVQAKTAYGSKNRQFMKSLGAGFSKDGWEGLLIRTERQGRETRPHGDIADGVEYGIDRLDAFRQTYDIQKQNKKAEYFLAEGEREPKPVAKLAGNGNYLKNQLNRWVEERKKNNQPLSAEEEAMVREAQARHENLSAQAYTGGGRILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDEAKKFSDKSGVYDGDDFRDGLYFRPNIEEWKGDTNLVKGIGLKYSRTKFIDEHHRRRRMGLLYRYENEAYSDNWADKTVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSSDRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAISRPEQLSHNAARISESTGFDDNNQDKYLLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYFDFSLGGRYDRQNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSVSYRASSGFRTPSFQELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVADQKTKLPDSTGRLTEIDIRDYYNAQNMSLQGINILGKIDWNGVYGKLPEGLYTTLAYNRIKPKSVSNRPDLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELAYLAGDQKRYSAGRVTSSWKTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAESTANRRSEDSNYGRYAAPGRNFSLALEMKF
>NZ_CP019894.1|WP_045750288.1|967164_969390_+|transferrin-binding-protein-like-solute-binding-protein
MCKLNYGGIALLPLMLAACGGNFGVQPVAKPTPIAQTPSDSKPSKPEDVPTPPPAKPSIETTPVNQPAVGAAMRLPRRNIASYKQDGTEIPDKHQAEEHLPLKEKDILFLDGTLKEQADKLKKKINERYSDVRVITSKKEEEKYQYQFVRAGYVFTRAEGKDNEKEKTSDGKEFVNRFSYDGFVYYSGERPSQSLPSAGTVQYSGNWQYMTDAKRHRTGKAVSSTDLGYTTYYGNEIGATSYEARDADDREKHPAEYTVDFDNKTLNGKLIKNQYVQNKSNPNEPKKPLTIYDITAKLDGNRFTGSAKVNTEVKKSHADKEYLFFHTDADQRLEGGFFGDKGEELAGRFISNDNSVFGVFAGRQKTDASNASGTNPAMPSEKHTKILDSLKISVDEAADEKARTFAISSMPDLGHPDKLLVEGREIPLVNQEKTINLADGRKMTVRACCDFLTYVKLGRIKTDRPASKPKAEDKREDEESAGVDNGEEGTEDEAAEGSEGAEDEIGDEEEGTGDEAVEGEDGEEDEGEEAEEPEEESPAEGGGGSDGILPAPEAPKGRDIDLFLKGIRTAEADIPKTGTAHYTGTWEARISKPIQWDNKADKAAKAEFNVDFGKKSISGTLTEKNGVEPAFRIENGVIDGNGFHATARTRDNGINLSGNGSTNPQSFKADNLLVTGGFYGPQAEELGGTIFNNDGKSLDITEDTENEAEAEAGVDEQLEPEAKPQFGVVFGAKKDNKEVEK
>NZ_CP019894.1|WP_003714710.1|965697_965991_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDISLENAEGQARLRRVAKLCQDYGVRVQYSVFECDIAPDQWVVLKDKLLKTYNPETDSLRFYHLGSKWRRKVEHHGAKPAVDIFKDTLIV
>NZ_CP019894.1|WP_003714712.1|964629_965643_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHSIGHIFCFGNVLVSPFLLGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRMSEQNPVPIARNIIAAKIQAGKRVLQRQIRNHGGNADIQTAVAALNFSLQQLKRADSLDLIRGIEGDAAARYFGVFGQLVKAESGFAFDGRNRRPPRDSVNALLSFLYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFIVEAGGAVSLKADARKLLFQSLQAKKQEKITHPFLGEEVEIGLLPYIQAMLLARHLRGDLSAYPPFLMR
>NZ_CP019894.1|WP_155114604.1|963713_964031_+|hypothetical-protein
MPSEVCSDGICVLGQVRPVTENICFDGVFRSAIKAAAVTRAYQAHPISGRQSGRRTAAEIDGTDFAASLTDSGSAMILSVQTRLQPPFQALRQKPQWLAQNGICG
>NZ_CP019894.1|WP_155270577.1|963574_963724_+|hypothetical-protein
MPAEDFGYNGNNAACTASDGMQAPSSAHYSALSSKEGIEAAEKISANAV
>NZ_CP019894.1|WP_002255820.1|962534_963458_+|GTPase-Era
MDIETFLAGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADDIRFLRELGL
>NZ_CP019894.1|WP_003714716.1|961768_962488_+|ribonuclease-III
MKDDVLKQQAHAAIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPLKKKKK
>NZ_CP019894.1|WP_002238889.1|961278_961602_-|DUF2185-domain-containing-protein
MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGWRFFSGDETDEYTDDPDNFSIVSLADITKTNPETAALLSQPEGSAWELAEDGTFQTVADWQPQD
>NZ_CP019894.1|WP_003714718.1|960754_961231_-|6,7-dimethyl-8-ribityllumazine-synthase
MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVADENITVATVPGALEIPIALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGIGRVALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE
>NZ_CP019894.1|WP_003713820.1|972743_973370_-|phosphoribosylanthranilate-isomerase
MRKIRTKICGITTPEDASNAAAAGADAVGLVFFQGSSRAVDIARAKEIAAALPPFVSVVALFVNESVQNIRRILAEVPIHIIQFHGDEDDAFCRQFHRPYIKAIRVQTASDIRNATHRFPNAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGGLTPENVGEAVRITGAESVDVSGGVEASKGKKDPAKVAAFIATANHLSR
>NZ_CP019894.1|WP_003713818.1|973428_973920_-|transcription-elongation-factor-GreB
MSTETKNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYVKID
>NZ_CP019894.1|WP_003713816.1|974019_975564_-|amidophosphoribosyltransferase
MCGVLGLVSHEPVNQLLYDGLQMLQHRGQDAAGIVTAEGGTFHMHKGKGMVREVFRTRNMRDLTGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHNGNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNIDNIFNAVAEVHRLVRGAYGVVAMIAGYGMVAFRDPYGIRPLALGSQTDEAGRKSYAVASESVAFNALAYDLERDIRPGEAVFVGFDGTIIARQCSDKAKLSPCLFEYVYFARPDSVIDGVSVYQSRLDMGVSLAEKIKRELPVDDIDVVMPIPDTSRPSAMELAVHLKKPYREGLIKNRYIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAGARKVYIASAAPEVRYPNVYGIDMPTREELIANGRSAAEIAAEIGADGIVFQDLGDLETVVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISISDAGDEE
>NZ_CP019894.1|WP_114936045.1|975711_975900_+|hypothetical-protein
MRQGKYFPQKCRLKVSDGIFYAVSAAVCGSPKPPAAASARSHIKEGGTRYTGHILGGCVFNV
>NZ_CP019894.1|WP_003713813.1|975970_976468_-|CvpA-family-protein
MNSLPVADLLVSAVIAACILISAMRGVIAEAGSLAAWVIAFFFAKLFAAPFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTQAVSAVGLGFANRILGGVFGALKGVLIVTLLVMPASKTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGGTAETLEDD
>NZ_CP019894.1|WP_003713811.1|976460_977537_-|cell-division-protein-FtsN
MSENKQNEVLTGYEQLKRRNRRRLVTASCLVAASCILLAAALSSDPADSNPAPQAGETGATENQTANAAQAPALKSAAGNGETAAGKPQDAAGGGKPADDGGISEPEDIGAPLVIINNRLDDSNIKGLEASAKPQPQEAAEKPQPEETAATAQAEAKQGAAEKAQAPADNKDTAEKPKPAAEPKPQKTERAAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDKPVKEPKKSDKAESKKPAEKDSSDGKKHETAQKTDKADKAKTAGQGKTAEKEKSDKTGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE
>NZ_CP019894.1|WP_003713809.1|977549_978824_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAVNAEPVSDDTITASFERIEAERGDISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAVNVFDGDCAVVTSVDLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVAHAETIGAKLLMVQRDFEFHAMENIQWNYRFHPQHSDDRARNRNALPFPALRGAYQLSNAACALTVLECLNDKLPADIGAIKRGLLLVENLGRFQVLPGRPLTVLDVGHNPHAARALRRSLMNLAFAQKRTAVFSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQDKLHEHGIENIQTFAAVREAYRAAASKAGENDRIVVFGSFHTVADVMSVL
>NZ_CP019894.1|WP_003713808.1|978855_979302_-|hypothetical-protein
MRAFQTALKPSRILNILTISLHSVSIAVCLTWFYGRMMWFGLAALLASFIHSLRITNLKNRRAVTAVIIDRDGRAEIISGKEKTAKAAALSGSSMVTPYALFLQWDTGGKTVRHCITPDMADKESYRRLKVWVLWRQPKKTAETDTPS
>NZ_CP019894.1|WP_003713806.1|979306_979666_-|hypothetical-protein
MYFVDRTAVVLKPTVRFLEWLKSTDENMPDLTIEQLRANCSVFLVPQFDEPEAVVSYFDERYRQIFEAELAGWDIDKDKWPQDMGLKAFWEFFDIEIHDMVLDMEEADLNITPVFDNIM
>NZ_CP019894.1|WP_003713803.1|979738_980467_-|amino-acid-ABC-transporter-ATP-binding-protein
MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLIRTVNQLESIESGEIWVDGVNVADPKTDLNKIREEVGFVFQGFNLYPHLTVLENITLAPMKVKGQNAEQAEKKAMELLERVGLVHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLFDEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVLFVDKGQILEDETPEAFFTNPKHERAKQFLQQVMTH

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Crispr_ID: NZ_CP019894_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_9

1908886-1908986

Orphan

I-E

Consensus_repeat	Method
GTCATTCCCACGGAAGTGGGAATCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_9

>merge|NZ_CP019894|9|1908886-1908986|CRISPRCasFinder
GTCATTCCCACGGAAGTGGGAATCCGATTCGTTCAGTTTTATAGTGGTTTTCGAGTTTCAGGCAACTTCCAAACCGTCATTCCCACGGAAGTGGGAATCCG

>NZ_CP019894|9|9|1908886-1908986|CRISPRCasFinder
GTCATTCCCACGGAAGTGGGAATCCG	ATTCGTTCAGTTTTATAGTGGTTTTCGAGTTTCAGGCAACTTCCAAACC
GTCATTCCCACGGAAGTGGGAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003714447.1\|1902499_1904803_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP019894.1\|WP_078835995.1\|1896338_1898963_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP019894.1\|WP_003714453.1\|1906407_1907925_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP019894.1\|WP_003714648.1\|1918783_1920235_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP019894.1\|WP_003714438.1\|1894061_1894964_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP019894.1\|WP_003714649.1\|1917949_1918234_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP019894.1\|WP_003714457.1\|1911132_1911903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714646.1\|1920755_1922009_-\|NADH-quinone-oxidoreductase-subunit-F	unknown	unknown	gnl\|CDD\|224806
NZ_CP019894.1\|WP_003714456.1\|1909818_1910988_-\|O-succinylhomoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|188131
NZ_CP019894.1\|WP_025457810.1\|1893426_1893915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714644.1\|1922005_1923634_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|235758
NZ_CP019894.1\|WP_003709369.1\|1912305_1913112_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP019894.1\|WP_003714454.1\|1908029_1908782_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP019894.1\|WP_045750333.1\|1913066_1913276_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003709391.1\|1901669_1902353_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|172608
NZ_CP019894.1\|WP_096108568.1\|1895004_1896135_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP019894.1\|WP_003714444.1\|1899050_1900073_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714458.1\|1912002_1912254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_002238197.1\|1900127_1901297_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|238192
NZ_CP019894.1\|WP_002212781.1\|1909526_1909733_-\|DUF2788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378526

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003714447.1\|1902499_1904803_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP019894.1\|WP_078835995.1\|1896338_1898963_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP019894.1\|WP_003714453.1\|1906407_1907925_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP019894.1\|WP_003714648.1\|1918783_1920235_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	9.88474e-134
NZ_CP019894.1\|WP_003714438.1\|1894061_1894964_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.125e-11
NZ_CP019894.1\|WP_003714646.1\|1920755_1922009_-\|NADH-quinone-oxidoreductase-subunit-F	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	3.53839e-142
NZ_CP019894.1\|WP_003714456.1\|1909818_1910988_-\|O-succinylhomoserine-sulfhydrylase	gnl\|CDD\|188131	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP019894.1\|WP_003714644.1\|1922005_1923634_-\|FAD-binding-protein	gnl\|CDD\|235758	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	6.96239e-104
NZ_CP019894.1\|WP_003709369.1\|1912305_1913112_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.88377e-102
NZ_CP019894.1\|WP_003714454.1\|1908029_1908782_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	6.2248e-112
NZ_CP019894.1\|WP_003709391.1\|1901669_1902353_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|172608	PRK14118, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	9.56456e-165
NZ_CP019894.1\|WP_096108568.1\|1895004_1896135_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.67254e-178
NZ_CP019894.1\|WP_003714649.1\|1917949_1918234_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	1.84585e-52
NZ_CP019894.1\|WP_002238197.1\|1900127_1901297_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|238192	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.	6.64554e-78
NZ_CP019894.1\|WP_002212781.1\|1909526_1909733_-\|DUF2788-domain-containing-protein	gnl\|CDD\|378526	pfam10981, DUF2788, Protein of unknown function (DUF2788). This bacterial family of proteins have no known function.	6.34727e-11

>NZ_CP019894.1|WP_003714454.1|1908029_1908782_+|class-I-SAM-dependent-methyltransferase
MTDILIDDTATEAVRALIRAFPLVPVSRPPEQGSYLLAEHDTVSLRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAKPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVPTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEAVLLHTARQTAKKRVVVKRPRLGEHLAGQAPAYQYTGKSTRFDVYLPYGADKG
>NZ_CP019894.1|WP_003714453.1|1906407_1907925_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNKLDSQRYSLVLTDMRMPDGSGLEVVQHINSRALDIPIAVITAFGNADQAQEALRCGAFDYIQKPITLARLRSLVKSAISVSENQNKIPEPPVRTASPVSSPMPSEAPKPANAIPTAPPVSAALPYAEPDMPRLLGSSPQMVEVRHLIRRLASGKVPVYISGESGTGKEQAARTIHELSDRAGKPFVAVNCGAIPENLMESEFFGYRKGSFTGADKDHDGFFRHADGGTLFLDEVADLPLSMQVKLLRAIQEKAVRRIGDTAEQPVDIRIVCATHKNLEALVESGAFRQDLYYRLNVVSLNMPSLREMREDLKLLIPYLLYKHSRNNRPYTLSHAAQQMLLNYSYPGNFRELENILERAVALCVGHTVQIDDLQIQDVRHKPVRTETAERAADTLPSETAAAPSRVLPFDPDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRYRMERLNID
>NZ_CP019894.1|WP_003714447.1|1902499_1904803_+|DNA-topoisomerase-IV-subunit-A
MNTQPHASHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMEAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQADMKQYGDARRTLVEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNTGESMTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGRLLPISGSLKQLSSPK
>NZ_CP019894.1|WP_003709391.1|1901669_1902353_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MELVFIRHGQSEWNAKNLFTGWRDVKLSGQGLAEAAAAGKKLKENGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGRLQGLDKKQTAEQYGDEQVRIWRRSYDTLPPLLDKDDAFSAHKDRRYAHLPADVIPDGENLKVTLERVLPFWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDEDIMGLEIPTGQPLVYKLDDNLKVIEKFYL
>NZ_CP019894.1|WP_002238197.1|1900127_1901297_-|DNA-cytosine-methyltransferase
MTERLTMTEFARKNWNKLAGDAIKAKMHEHGIGFIQLSELFLEQGESETANAICNKVNRGTFSHAFYLKCMELMTKQEKQEDREKKYKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGDIWQHLDEIPTSADIIIGGFPCQDISINGKGAGISGSRSGLYKAMLSAVERVRPKIFVAENVKGLLMKHHRKDLETVLSDFRNLGYQVDYYLLNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQAIGDLVDKVEDEIANHIWSRAEKSPDQGSRKLDAERAGYTIRAECHGNIQWHYELPRRISMREAARIQSFPDNFIFQAKLRATERQIGNAVPPVLGWHIAAAVSKALK
>NZ_CP019894.1|WP_003714444.1|1899050_1900073_-|hypothetical-protein
MLTKKEFEKFLDEVCTVLRQEAKNAPFKSQDIFENRVRALCIAKISAYADIVINPEPVPQIFPDVPIGEYGVEVKFTLKDTWRSVANSIQEKNKADGVQHIYVVFGKMGGIPDVKWQLYEDSVIHVRTSHVPRFEVEIESDRPSLFEGFGISYAEFADLDMHEKMEYIRKYARNRLKEGERLWWIEDIDAVDSHDLPLEVRLYTSLPQEEKIRLRAEAALVSPRIVCSGRAKHKYDNAVLYLITYRGVLCHQARDLFSAGSVANSAEDYRGGNYVEKSLKLIEHEIEKAALEMDDALIVEYWGESVPTEKRLEYWIKMLDDLADGWIPSESLFNGRYKAK
>NZ_CP019894.1|WP_078835995.1|1896338_1898963_+|alanine--tRNA-ligase
MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEPSLKVIADHIRSCSFLIADGVLPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKNEESRFAQTLETGMALLENALAKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNIEPDEAGFEREMEAQRARARAAQSFKANAQLPYEGQDTEFKGYSERQTEAKVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIVLLAAVNDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQVGGKGGGRPDLAQAGGSDVEKLPAMIDSVKDWVSAKLA
>NZ_CP019894.1|WP_096108568.1|1895004_1896135_-|polyamine-ABC-transporter-substrate-binding-protein
MAKHLPLAVLTALLLAACGGSDKPPAEKPAPAENRNVLKIYNWSEYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAGAYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTDKLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATALLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIARRRAEEAGGKEKIRVMMPKEGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARDLMEDEFKNDNTIFPSGEDLKNSFIMVPIRPAALKFMVRQWQDVKAGK
>NZ_CP019894.1|WP_003714438.1|1894061_1894964_+|DMT-family-transporter
MDTAKKDVLGSGWMLVAAACFTIMNVLIKEASAKFALGSGELVFWRMLFSTVALGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTLSYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGGAMSGWAYLKVRELSLAGEPGWRVVFYLSATGVAMSSVWATLTGWHMLSWQSAVYLSGIGVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEQLFWQEILGMCIIILSGILSSIRPIAFKQRLQSLFLRK
>NZ_CP019894.1|WP_025457810.1|1893426_1893915_-|hypothetical-protein
MKKYLALIPIAAALSGCGTVYVPTLTEIPVRPINTVPAEASVKGFRLAPSHWTDVSKIRDEATRLSYQVDIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYEIYLRSAVDSQRGAINTEQSKLYIENALRGWQQRWKNMDVKPDNPAFTNFLMEVMKMQPLK
>NZ_CP019894.1|WP_002212781.1|1909526_1909733_-|DUF2788-domain-containing-protein
MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILFLVLGLGVFGFVFKELLIKFLVLPK
>NZ_CP019894.1|WP_003714456.1|1909818_1910988_-|O-succinylhomoserine-sulfhydrylase
MSKKLHPQTLAIRGGKEQTGYREHNQALFLTSSFMWDNAQHAADLFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDHVVSSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLGEVADLEALAELAHGIGALLVVDNSLLSPVGSQPLKHGADISVSSATKAIDGHGRVMGGVLAGSEELLAQVAVYCNSCGLAMSPFNAWQLLGGVETLSLRMEKQFDNALKIAQWLQAQPQVQAVYYTGLPDHPQAELIRKQQNGGGIVIGFEVADQEAAWKVVDGVELFSRTANLGDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR
>NZ_CP019894.1|WP_003714457.1|1911132_1911903_-|hypothetical-protein
MDTNNQDKEPNWEKRLENLRRTRRMNTAPDRVPPVQTSEAAKSVSAPKLDDASRNRVLKAYLQKWQEEHNAAVAECGEEVETDPMVILQENWLNAQASLQMSVSEKHIESRRKIRFDAKKDCVEFETAQIEGGENADAAESGTNEPAVSENGENDAEETLMPVQINILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQLQQMLHEQAGAVVEDVLEHDVRKILNDIKYELKYKR
>NZ_CP019894.1|WP_003714458.1|1912002_1912254_+|hypothetical-protein
MSSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPADTAEIAVESIQLAFEDALAELNYEDSPHTDLFHDVTYAFFREKER
>NZ_CP019894.1|WP_003709369.1|1912305_1913112_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKVSSSEDLKKMNKVGVVTGYTGDFSVSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPAKGMDFVTLPDFTTEHYGIAVRKGDEATVKMLNDALKKVRESGEYDKIYAKYFAKEGEQAAK
>NZ_CP019894.1|WP_045750333.1|1913066_1913276_-|hypothetical-protein
MPSEVQQSPRCRLKTQMAAQQCRAADIAVPTQNGTDNKKCRLKGLQTAFCSDGRAYFAACSPSLAKYLA
>NZ_CP019894.1|WP_003714649.1|1917949_1918234_-|GIY-YIG-nuclease-family-protein
MQPAVYILASQRNGTLYVGVTSDLVQRIYQHREHLVEGFTSRYNVTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWRDLWFDII
>NZ_CP019894.1|WP_003714648.1|1918783_1920235_-|DASS-family-sodium-coupled-anion-symporter
MGFKPIPAAAALALTLLIWFVIPVPQGVSPDAWHLLALFVGIIAGIIGKAMPIGAMAVLGITLVALTGVTNEKAADATKDALSSLNNSLIWMIGIAIIISRGLLKTGLGMRIGYLLISLFGKRTLGVGYSLALADLAIGPVTPSNTARGGAIVHPIMKSIALSFDSDPEKGTEGKIGKYLSLVNFHANVITCLIFITATAPNPLVVELVAKATNSQIQLSWGTWFLAMIVPGLIAMLLMPPVLYFLYPPEIKQTPDATALAKEKLKEMGAMKRDEKMMLGIFVILLLLWAGIPEMLAGVKVDAAATTFLGLSLCLLSGVLTWDDALKEKSAWDTIVWFAALVMMANFLNKLGLIGWLSESMQSGIAHLGLGWEAGCALLMLAYLYAHYVFASGTAHVTAMFGAFYGAGLALGAPPMLFALMMAAATGIMMSLTHYATGSAPVIYGSNYVNMGEWWKAGFIMSVIEILIFATVGILWWKALGYW
>NZ_CP019894.1|WP_003714646.1|1920755_1922009_-|NADH-quinone-oxidoreductase-subunit-F
MNQANQNLLHPSRQVGADLTAWRKVGGGEGLLAALADPQSIVSKLQKANLCGMGGAGFPTWRKWEAAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEGRTFKAVFTGGPSNTLLTVKDLDVPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEYGLPAGQD
>NZ_CP019894.1|WP_003714644.1|1922005_1923634_-|FAD-binding-protein
MVNKIQGIDYETALANLRASSLELRGDLPEKNELLSQFHPDYQANARVKLPIGPNAGDYCHPDLAKLLISRPLIDDYDLSGAEHLNTDVLVIGGGGAGAAAALSATEAGARVIMANKLRIGDSNTVMAEGGIQAAVGAEDSLQQHFDDTIKGGHNAGKKDLVAQMVTDAPSAIRWLIGLGMTFDLANGADSNGMLSRKRAGGTTVPRILSYRDFTGLEMMRVLREAVELDENITQLNRHPAIELLSDEHGRCVGAILYDLEKRSLVLVHAKAVVLATGGSGRLHLQGFATSNHYGATADGLVMAYRIGAKLRDVDSFQYHPTGVAHPPHLAGALISEAVRSAGTKLVNGLGERFVDELQPRDVVAAAILRECREGRGVVRDGQVGVFLDTPRLIANDPDVLNRLVTLGHVAHKCGIDPAVEPVMIHPTLHYQNGGVEINGDGATCVEGLYCAGEVTGGIHGRNRLMGNALLDIISFGRRAGKAAANCGLPLKKVRGGVGHVHDLQREMTRAGLNGDIKAPVLYPDYGKFDLREHAGLQEQQL

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Crispr_ID: NZ_CP019894_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019894_10

1931868-1931971

Orphan

Consensus_repeat	Method
TTCGTCATTCCCGTGAAAACGGGAATCTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019894_10

>merge|NZ_CP019894|10|1931868-1931971|CRISPRCasFinder
TTCGTCATTCCCGTGAAAACGGGAATCTAGAACCTCTAAATTTTCAGATAACCTTTGAATATTCCCGCACCCTTCGTCATTCCCGTGAAAACGGGAATCTAGAA

>NZ_CP019894|10|10|1931868-1931971|CRISPRCasFinder
TTCGTCATTCCCGTGAAAACGGGAATCTAGAA	CCTCTAAATTTTCAGATAACCTTTGAATATTCCCGCACCC
TTCGTCATTCCCGTGAAAACGGGAATCTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019894.1\|WP_003714641.1\|1925038_1926562_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
NZ_CP019894.1\|WP_003714646.1\|1920755_1922009_-\|NADH-quinone-oxidoreductase-subunit-F	unknown	unknown	gnl\|CDD\|224806
NZ_CP019894.1\|WP_003714409.1\|1940049_1941222_+\|nitrite-reductase,-copper-containing	unknown	unknown	gnl\|CDD\|131429
NZ_CP019894.1\|WP_003714414.1\|1934506_1934944_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP019894.1\|WP_003714648.1\|1918783_1920235_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP019894.1\|WP_078835999.1\|1933524_1934394_-\|SAM-dependent-methyltransferase-TehB	unknown	unknown	gnl\|CDD\|183450
NZ_CP019894.1\|WP_155765809.1\|1932203_1932374_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_153063772.1\|1934862_1935093_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003709130.1\|1935689_1936094_+\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|334445
NZ_CP019894.1\|WP_003714638.1\|1926659_1928072_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NZ_CP019894.1\|WP_003714644.1\|1922005_1923634_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|235758
NZ_CP019894.1\|WP_003709369.1\|1912305_1913112_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP019894.1\|WP_045750333.1\|1913066_1913276_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714419.1\|1932668_1933475_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP019894.1\|WP_003714649.1\|1917949_1918234_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP019894.1\|WP_003714458.1\|1912002_1912254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_155114600.1\|1935172_1935343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019894.1\|WP_003714642.1\|1923633_1924272_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|238897
NZ_CP019894.1\|WP_003714412.1\|1936133_1937321_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183059
NZ_CP019894.1\|WP_003714411.1\|1937422_1939678_-\|nitric-oxide-reductase-large-subunit	unknown	unknown	gnl\|CDD\|225795

Protein	Function_ID	Function_description	E-value
NZ_CP019894.1\|WP_003714641.1\|1925038_1926562_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.30896e-150
NZ_CP019894.1\|WP_003714646.1\|1920755_1922009_-\|NADH-quinone-oxidoreductase-subunit-F	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	3.53839e-142
NZ_CP019894.1\|WP_003714648.1\|1918783_1920235_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	9.88474e-134
NZ_CP019894.1\|WP_003714414.1\|1934506_1934944_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	6.39205e-97
NZ_CP019894.1\|WP_078835999.1\|1933524_1934394_-\|SAM-dependent-methyltransferase-TehB	gnl\|CDD\|183450	PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.	5.07975e-176
NZ_CP019894.1\|WP_003714409.1\|1940049_1941222_+\|nitrite-reductase,-copper-containing	gnl\|CDD\|131429	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification. [Central intermediary metabolism, Nitrogen metabolism].	1.41602e-166
NZ_CP019894.1\|WP_003709130.1\|1935689_1936094_+\|HIT-domain-containing-protein	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	2.96291e-27
NZ_CP019894.1\|WP_003714638.1\|1926659_1928072_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	0
NZ_CP019894.1\|WP_003714644.1\|1922005_1923634_-\|FAD-binding-protein	gnl\|CDD\|235758	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	6.96239e-104
NZ_CP019894.1\|WP_003709369.1\|1912305_1913112_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.88377e-102
NZ_CP019894.1\|WP_003714419.1\|1932668_1933475_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.59205e-147
NZ_CP019894.1\|WP_003714649.1\|1917949_1918234_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	1.84585e-52
NZ_CP019894.1\|WP_003714411.1\|1937422_1939678_-\|nitric-oxide-reductase-large-subunit	gnl\|CDD\|225795	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism].	0
NZ_CP019894.1\|WP_003714642.1\|1923633_1924272_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|238897	cd01916, ACS_1, Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.	4.20666e-10
NZ_CP019894.1\|WP_003714412.1\|1936133_1937321_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|183059	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.	7.20409e-121

>NZ_CP019894.1|WP_003714638.1|1926659_1928072_+|Trk-system-potassium-transporter-TrkA
MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRLDVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRSSEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRVRMVIIQARRGGLLVNREIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEILFAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAEWIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRVIGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVVAHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVSRRRILNELEKLIQVKMGFFG
>NZ_CP019894.1|WP_003714641.1|1925038_1926562_+|fumarate-hydratase
MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAAKDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAYTWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGDKIEVTCAAKGGGSENKSKLAMLNPSDNIVDWVLKTIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQEKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAMIPNCAATRHVEFELDGSGPVELTPPRVEDWPDLTYSPDNGKRIDVDKLTKEEVAGWKTGDVLLLNGKILTGRDAAHKRLVDMLDKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQMLEQTGLLGMIGKSERGAATCEAIADNKAVYLMAVGGAAYLVAKAIKSSKVLAFPELGMEAVYEFEVKDMPVTVAVDSKGESIHATAPRKWQAKIGIIPVES
>NZ_CP019894.1|WP_003714642.1|1923633_1924272_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MSENLLTLTIDGHEVKASADSSIIQAYARSGSAITANVGCMGQGVCGSCRCMIRKEGEREVTTALACETKVEEGMQVSFLDYFIPEHIQYYDVGEVGDGWNWLDDTAKAFPEAQNCRHCGGCNRACPKGLQVENGVAQVVSGDFGAAALTFDQCVMCNLCTLSCPEHIRPNHLGLFARRMKAARTLRPVDLMRRLREIDSGKMKVEFEEESV
>NZ_CP019894.1|WP_003714644.1|1922005_1923634_-|FAD-binding-protein
MVNKIQGIDYETALANLRASSLELRGDLPEKNELLSQFHPDYQANARVKLPIGPNAGDYCHPDLAKLLISRPLIDDYDLSGAEHLNTDVLVIGGGGAGAAAALSATEAGARVIMANKLRIGDSNTVMAEGGIQAAVGAEDSLQQHFDDTIKGGHNAGKKDLVAQMVTDAPSAIRWLIGLGMTFDLANGADSNGMLSRKRAGGTTVPRILSYRDFTGLEMMRVLREAVELDENITQLNRHPAIELLSDEHGRCVGAILYDLEKRSLVLVHAKAVVLATGGSGRLHLQGFATSNHYGATADGLVMAYRIGAKLRDVDSFQYHPTGVAHPPHLAGALISEAVRSAGTKLVNGLGERFVDELQPRDVVAAAILRECREGRGVVRDGQVGVFLDTPRLIANDPDVLNRLVTLGHVAHKCGIDPAVEPVMIHPTLHYQNGGVEINGDGATCVEGLYCAGEVTGGIHGRNRLMGNALLDIISFGRRAGKAAANCGLPLKKVRGGVGHVHDLQREMTRAGLNGDIKAPVLYPDYGKFDLREHAGLQEQQL
>NZ_CP019894.1|WP_003714646.1|1920755_1922009_-|NADH-quinone-oxidoreductase-subunit-F
MNQANQNLLHPSRQVGADLTAWRKVGGGEGLLAALADPQSIVSKLQKANLCGMGGAGFPTWRKWEAAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEGRTFKAVFTGGPSNTLLTVKDLDVPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEYGLPAGQD
>NZ_CP019894.1|WP_003714648.1|1918783_1920235_-|DASS-family-sodium-coupled-anion-symporter
MGFKPIPAAAALALTLLIWFVIPVPQGVSPDAWHLLALFVGIIAGIIGKAMPIGAMAVLGITLVALTGVTNEKAADATKDALSSLNNSLIWMIGIAIIISRGLLKTGLGMRIGYLLISLFGKRTLGVGYSLALADLAIGPVTPSNTARGGAIVHPIMKSIALSFDSDPEKGTEGKIGKYLSLVNFHANVITCLIFITATAPNPLVVELVAKATNSQIQLSWGTWFLAMIVPGLIAMLLMPPVLYFLYPPEIKQTPDATALAKEKLKEMGAMKRDEKMMLGIFVILLLLWAGIPEMLAGVKVDAAATTFLGLSLCLLSGVLTWDDALKEKSAWDTIVWFAALVMMANFLNKLGLIGWLSESMQSGIAHLGLGWEAGCALLMLAYLYAHYVFASGTAHVTAMFGAFYGAGLALGAPPMLFALMMAAATGIMMSLTHYATGSAPVIYGSNYVNMGEWWKAGFIMSVIEILIFATVGILWWKALGYW
>NZ_CP019894.1|WP_003714649.1|1917949_1918234_-|GIY-YIG-nuclease-family-protein
MQPAVYILASQRNGTLYVGVTSDLVQRIYQHREHLVEGFTSRYNVTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWRDLWFDII
>NZ_CP019894.1|WP_045750333.1|1913066_1913276_-|hypothetical-protein
MPSEVQQSPRCRLKTQMAAQQCRAADIAVPTQNGTDNKKCRLKGLQTAFCSDGRAYFAACSPSLAKYLA
>NZ_CP019894.1|WP_003709369.1|1912305_1913112_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASNAEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMSGVTITDDRKQSMDFSDPYFEITQVVLVPKGKKVSSSEDLKKMNKVGVVTGYTGDFSVSKLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPAKGMDFVTLPDFTTEHYGIAVRKGDEATVKMLNDALKKVRESGEYDKIYAKYFAKEGEQAAK
>NZ_CP019894.1|WP_003714458.1|1912002_1912254_+|hypothetical-protein
MSSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPADTAEIAVESIQLAFEDALAELNYEDSPHTDLFHDVTYAFFREKER
>NZ_CP019894.1|WP_155765809.1|1932203_1932374_+|hypothetical-protein
MHPRIRRHREIEGWSRQEYPSDAVSEMAGLAGAVGVGWVNWVVGVVEIIGVVGVVG
>NZ_CP019894.1|WP_003714419.1|1932668_1933475_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKGSFVQSLSIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVTAQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCRFGRRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVRIESRKDAERAAKILLDYGVKNVVIKGGHLNGSTSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCTFSACITAELAKGSDVCEAVQTAKAYITAAISNPLEIGAGHGPVNHWAYRD
>NZ_CP019894.1|WP_078835999.1|1933524_1934394_-|SAM-dependent-methyltransferase-TehB
MKERIVGQSGELFCFGQMPVWKAENLPEVLLSGYASEEGEWVCLNVLQGDVEVRTQDGAAEVWSAESDDCVFAPQQVFSVKPKTDDAEIRLSLYCTAADYFHKKYGMSATHSAVAAAQDTVPAGRALDMGCGQGRNALFLGLKGFEVTAVDHNPAALANVAELAEAEGLNVRTLEYDLNAAALQGEFDYIVATVVLMFLMPQRVPDVIADMQAHTAAGGYNLIVSAMDTADFPCPMPFPFKFKEGELKDYYRDWEQVEYKEELGSMHAKDENGNPIRFKFVTMLAKKPE
>NZ_CP019894.1|WP_003714414.1|1934506_1934944_+|ribonuclease-HI
MDTPVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKLLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVKGHAGHAENERADDLANRGAAQFS
>NZ_CP019894.1|WP_153063772.1|1934862_1935093_+|hypothetical-protein
MGERTRGTRRKRTRRRFGKPWRGAVFLTAAPAKMPSETANGLQTASSSTVIPTKAGIWNVKSKETVLPDKFPCRQT
>NZ_CP019894.1|WP_155114600.1|1935172_1935343_+|hypothetical-protein
MTVATTYPGMTDNGLQTASDGISCLPLKQFAAQLFKRVRYVSTHRTTHKAPPYVSS
>NZ_CP019894.1|WP_003709130.1|1935689_1936094_+|HIT-domain-containing-protein
MTAQPCPICTAQDEDILLQTPKLRVIAVHNDSGSPAFCRVIWRKHIAEMTDLSAAERGELMEMVYKVEAAMRQVFRPAKINLASLGNVVPHLHWHIIARFENDATFPAPIWANPVRKHGMTLPQDWTEQLKKLL
>NZ_CP019894.1|WP_003714412.1|1936133_1937321_+|twin-arginine-translocation-signal-domain-containing-protein
MIEPTSRRRFLKTCTAAAGAGLLQACGTAPASNNAPSAPSHPVAKARTVYPKPPRHSNSADNLLRIVASSGFAEDTNRVNTALTRLYNAGFTVTNQQAGSRRFQRFAGTDAQRAADFQDVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMRERGTLFFGFSDVCAVQLALLAKGNMMSFAGPMAYSEFGKPSPSVFTMDAFIKGATQNRLTVDVPYIQRANVETEGTLWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLNTLYLSGILDKQRAIVFGDFRMGNIRDVYDSSYDFSTVVNHISRTAKIPVLTGFPFGHIADKITFPLGAHARIRMNGNGGYSVAFEGYPTLDASALTLDTLLPPPNLPIFPESGVADISE
>NZ_CP019894.1|WP_003714411.1|1937422_1939678_-|nitric-oxide-reductase-large-subunit
MGQYKKLWYLLFAVLAVCFTILGYMGSEVYKKAPPYPEQVVSASGKVLMTKDDILAGQSAWQSTGGMEVGSILGHGAYQAPDWTADWLHRELSAWLDLTAQQTYGKKFDEVSPEEQAVLKTRLADEYRNQSRVKEDGSVVISDTRVKAIESILPYYHGVYGDDPKLQTTREHFAMKNNTLPSQEAREKLFDFFFWTSWSASTNRPGEVFTYTNNWPHEPLINNVPTTENYMWSFTSVVLLLMGIGLLMWGYSFLTKHEEVEIPAEDPISKIQLTPSQKALGKYVFLTVALFVVQVLLGGLTAHYTVEGQGFYGIDEALGFEMSDWFPYALTRTWHIQSAIFWIATGFLTAGLFLAPIVNGGKDPKFQRAGVNFLYIALFIVVGGSYAGNFFALTHILPPEFNFWFGHQGYEYLDLGRFWQLLLMVGLLLWLFLMLRCTVSAFKEKGVDKNLLAIFVASMVGVGVFYAPGLFYGEKSPIAVMEYWRWWVVHLWVEGFFEVFATAAFAFVFYNMGFVRRSTATASTLAAAAIFMLGGVPGTLHHLYFSGSTSASMAIGACFSALEVVPLVLLGREAYEHWSYQHLSDWAKRLRWPLMCFVAVAFWNMIGAGVFGFLINPPISLFYIQGLNTSAVHAHAALFGVYGFLALGFVLLVARYLKPNAQFDDKLMTWGFWLLNGGLVGMIVISLLPVGAIQAYASITHGLWYARSEEFLQMEILDTLRWVRTAADLIFIGGAICVAIQATKIVFGRDK
>NZ_CP019894.1|WP_003714409.1|1940049_1941222_+|nitrite-reductase,-copper-containing
MKRQALAAMIASLFALAACGGEPAAQAPAETPAASAEAASSAAQTAAETPSGELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAASFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGAIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIMTQKLSDTAYAGNGAASAASAPAASAPAASASEKSVY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019894_6	6.1\|646389\|38\|NZ_CP019894\|CRISPRCasFinder	646389-646426	38	NZ_CP019894.1	646761-646798	2	0.947

1. spacer 6.1|646389|38|NZ_CP019894|CRISPRCasFinder matches to position: 646761-646798, mismatch: 2, identity: 0.947

cgcgaaaacagaaaaccaaaaacagaaacctaaaatct	CRISPR spacer
cgcgagaacagaaaaccaaaaacagaaatctaaaatct	Protospacer
*****.**********************.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019894_7	7.6\|966545\|34\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966545-966578	34	NC_010923	Neisseria lactamica plasmid pNL9, complete sequence	4461-4494	0	1.0
NZ_CP019894_7	7.11\|966879\|33\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966879-966911	33	NC_010923	Neisseria lactamica plasmid pNL9, complete sequence	3131-3163	0	1.0
NZ_CP019894_7	7.11\|966879\|33\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966879-966911	33	NC_004758	Neisseria meningitidis plasmid pJS-B, complete sequence	3381-3413	0	1.0
NZ_CP019894_7	7.11\|966879\|33\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966879-966911	33	ADWM02000138	Neisseria meningitidis K1207 plasmid, complete sequence, whole genome shotgun sequence	4181-4213	0	1.0
NZ_CP019894_7	7.9\|966745\|35\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966745-966779	35	NC_010923	Neisseria lactamica plasmid pNL9, complete sequence	4920-4954	2	0.943
NZ_CP019894_7	7.11\|966879\|33\|NZ_CP019894\|PILER-CR,CRISPRCasFinder,CRT	966879-966911	33	NC_010922	Neisseria lactamica isolate 3207487 plasmid pNL3.2, complete sequence	2546-2578	5	0.848

1. spacer 7.6|966545|34|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 0, identity: 1.0

aatctcttgagaaaaagcaggaacaaaaaaagcg	CRISPR spacer
aatctcttgagaaaaagcaggaacaaaaaaagcg	Protospacer
**********************************

2. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

3. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_004758 (Neisseria meningitidis plasmid pJS-B, complete sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

4. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to ADWM02000138 (Neisseria meningitidis K1207 plasmid, complete sequence, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

5. spacer 7.9|966745|35|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 2, identity: 0.943

agattatagggggcataaattcaagtcggctaaag	CRISPR spacer
agattatagagggcataaattcaagtcggttaaag	Protospacer
*********.*******************.*****

6. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010922 (Neisseria lactamica isolate 3207487 plasmid pNL3.2, complete sequence) position: , mismatch: 5, identity: 0.848

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgattttgtaacaaca	Protospacer
***********************.** ** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1000808 : 1014012

uncultured_Mediterranean_phage(11.11%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003713762.1\|1000808_1001924_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.8e-86	47.3
WP_003713759.1\|1002308_1004222_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	6.3e-126	37.3
WP_078835904.1\|1004239_1004761_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.5e-13	34.0
WP_003675505.1\|1004906_1005104_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003707953.1\|1005116_1005476_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003713753.1\|1005725_1006718_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.0e-30	35.1
WP_003713751.1\|1007025_1007463_+	very short patch repair endonuclease	V5UTF4	Oenococcus_phage	2.0e-27	54.2
WP_078835905.1\|1007440_1008529_+	DNA cytosine methyltransferase	Q6DMX0	Streptococcus_phage	8.6e-72	48.3
WP_003713749.1\|1008825_1011189_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.2e-05	27.6
WP_003675494.1\|1011261_1011564_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	6.8e-11	37.4
WP_003713748.1\|1011547_1011856_+	hypothetical protein	NA	NA	NA	NA
WP_003713747.1\|1012031_1012520_+	FxsA family protein	NA	NA	NA	NA
WP_003713746.1\|1012710_1014012_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.9e-18	27.9

DBSCAN-SWA_2

1354887 : 1393870

Acinetobacter_phage(21.21%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003711994.1\|1354887_1355592_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	9.0e-30	49.0
WP_078836093.1\|1355746_1355935_+	hypothetical protein	NA	NA	NA	NA
WP_003711991.1\|1356050_1356965_+	hypothetical protein	D0UIL5	Aggregatibacter_phage	1.8e-14	31.7
WP_003711988.1\|1356975_1357755_+	DNA replication protein	A0A067ZJ24	Vibrio_phage	8.4e-37	34.0
WP_003711986.1\|1357991_1358387_+	DUF3310 domain-containing protein	A0A2D2W2I2	Stenotrophomonas_phage	5.4e-08	56.9
WP_003711985.1\|1358383_1358677_+	hypothetical protein	NA	NA	NA	NA
WP_003711981.1\|1359085_1359241_+	hypothetical protein	NA	NA	NA	NA
WP_078836094.1\|1359571_1360144_+	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
WP_003711976.1\|1360140_1360524_+	hypothetical protein	W6MYB1	Pseudomonas_phage	2.7e-20	48.6
WP_003711973.1\|1360514_1361033_+	HNH endonuclease	Q2NPG0	Xanthomonas_virus	1.6e-28	46.7
WP_003711971.1\|1361084_1361609_+	hypothetical protein	NA	NA	NA	NA
WP_003711969.1\|1361880_1362291_+	hypothetical protein	A0A0R6PH16	Moraxella_phage	1.3e-25	44.4
WP_003711967.1\|1362295_1363645_+\|terminase	PBSX family phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	1.3e-170	64.7
WP_003711965.1\|1363641_1365594_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	4.6e-116	46.8
WP_003711963.1\|1365957_1366101_+	hypothetical protein	NA	NA	NA	NA
WP_003711960.1\|1367844_1369671_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	2.1e-62	39.9
WP_003711956.1\|1370159_1371158_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.0e-95	52.1
WP_045750109.1\|1371361_1371604_+	hypothetical protein	NA	NA	NA	NA
WP_003711952.1\|1371737_1372031_+	hypothetical protein	NA	NA	NA	NA
WP_003711950.1\|1372089_1372422_+	hypothetical protein	I2GUD8	Acinetobacter_phage	2.0e-08	34.6
WP_003711949.1\|1372423_1372822_+	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	8.4e-17	44.1
WP_045750108.1\|1372805_1373243_+	hypothetical protein	A0A077KC03	Edwardsiella_phage	1.9e-17	40.6
WP_003711946.1\|1373486_1373867_+	hypothetical protein	H9C0W3	Aeromonas_phage	4.5e-20	43.1
WP_003711945.1\|1373851_1374331_+	hypothetical protein	NA	NA	NA	NA
WP_003711944.1\|1374342_1375818_+	DUF3383 domain-containing protein	E2GLU1	Acinetobacter_phage	9.8e-95	41.7
WP_003711943.1\|1375869_1376310_+	hypothetical protein	NA	NA	NA	NA
WP_003711942.1\|1376311_1376758_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	8.5e-18	42.5
WP_078836095.1\|1376718_1376904_+	hypothetical protein	H9C0W8	Aeromonas_phage	2.6e-05	53.2
WP_003711939.1\|1377189_1379877_+	hypothetical protein	A0A068CCM7	Acinetobacter_phage	2.9e-76	46.9
WP_155114550.1\|1379962_1380115_+	hypothetical protein	NA	NA	NA	NA
WP_003711938.1\|1380244_1380904_+	hypothetical protein	A0A2R3UAZ1	Myoviridae_environmental_samples	2.2e-14	31.5
WP_155114550.1\|1380980_1381133_+	hypothetical protein	NA	NA	NA	NA
WP_003711938.1\|1381262_1381922_+	hypothetical protein	A0A2R3UAZ1	Myoviridae_environmental_samples	2.2e-14	31.5
WP_003711936.1\|1382162_1382459_+	hypothetical protein	NA	NA	NA	NA
WP_003711935.1\|1382448_1383336_+	hypothetical protein	A0A220NQG9	Acinetobacter_phage	1.6e-60	40.3
WP_003711934.1\|1383313_1384021_+	hypothetical protein	A0A2R3UAK1	Myoviridae_environmental_samples	4.3e-40	51.8
WP_003711930.1\|1384292_1384667_+	hypothetical protein	B7X9X8	uncultured_phage	1.2e-20	48.3
WP_003711929.1\|1384790_1385969_+	hypothetical protein	A0A2R3UAL9	Myoviridae_environmental_samples	4.2e-64	37.3
WP_003711927.1\|1385965_1386598_+	DUF2612 domain-containing protein	A0A220NQG4	Acinetobacter_phage	6.2e-38	41.9
WP_003711924.1\|1386601_1388353_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	2.8e-03	59.3
WP_153063905.1\|1388465_1388651_-	hypothetical protein	NA	NA	NA	NA
WP_003711922.1\|1388729_1389041_-	BrnA antitoxin family protein	A0A2H4J5Y5	uncultured_Caudovirales_phage	3.3e-08	53.8
WP_003711920.1\|1389015_1389294_-	hypothetical protein	K4NX81	Burkholderia_phage	7.9e-06	35.3
WP_003711919.1\|1389372_1389972_+	DUF4376 domain-containing protein	A0A0R6PGN1	Moraxella_phage	1.5e-33	45.4
WP_003711917.1\|1389968_1390439_+	hypothetical protein	A0A0R6PFI9	Moraxella_phage	1.3e-32	52.7
WP_003711915.1\|1390435_1390819_+	hypothetical protein	NA	NA	NA	NA
WP_003711914.1\|1390815_1391145_+	hypothetical protein	NA	NA	NA	NA
WP_003711912.1\|1391141_1391684_+	TIGR02594 family protein	A0A2P1CA59	Pseudomonas_phage	1.1e-51	52.8
WP_003711910.1\|1391684_1392029_+	hypothetical protein	NA	NA	NA	NA
WP_002217436.1\|1392402_1392771_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_002217434.1\|1392767_1392899_-	hypothetical protein	NA	NA	NA	NA
WP_003714856.1\|1393021_1393870_-	hypothetical protein	A0A0R6PDL2	Moraxella_phage	1.8e-37	46.8

DBSCAN-SWA_3

1539100 : 1547069

Cafeteria_roenbergensis_virus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003713106.1\|1539100_1539943_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.5e-47	40.8
WP_003713108.1\|1539957_1540398_+	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_003713109.1\|1540442_1541729_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.0e-148	62.5
WP_003713111.1\|1541743_1542022_+	cell division protein FtsB	NA	NA	NA	NA
WP_013448988.1\|1542061_1542352_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	9.7e-15	54.5
WP_118779157.1\|1542482_1543616_-	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	1.5e-164	75.1
WP_003713114.1\|1543830_1544787_-\|protease	CAAX amino protease	A3QSC6	Clostridium_virus	3.9e-28	32.7
WP_003713115.1\|1544789_1547069_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-310	67.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019894

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection