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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019894 Neisseria lactamica strain Y92-1009 chromosome, complete genome 10 crisprs DinG,DEDDh,cas1,cas3,cas2,c2c4_V-U1,cas4,cas7,cas8c,cas5 1 3 3 0

Results visualization

1. NZ_CP019894
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_1 153483-153585 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_2 247859-247959 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_3 450598-450717 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_4 457564-457647 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_5 581148-581246 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_6 646358-646562 Orphan I-E
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_7 966181-966943 Unclear NA
11 spacers
cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_8 972404-972501 Unclear I-E
1 spacers
cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_9 1908886-1908986 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019894_10 1931868-1931971 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019894_6 6.1|646389|38|NZ_CP019894|CRISPRCasFinder 646389-646426 38 NZ_CP019894.1 646761-646798 2 0.947

1. spacer 6.1|646389|38|NZ_CP019894|CRISPRCasFinder matches to position: 646761-646798, mismatch: 2, identity: 0.947

cgcgaaaacagaaaaccaaaaacagaaacctaaaatct	CRISPR spacer
cgcgagaacagaaaaccaaaaacagaaatctaaaatct	Protospacer
*****.**********************.*********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019894_7 7.6|966545|34|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966545-966578 34 NC_010923 Neisseria lactamica plasmid pNL9, complete sequence 4461-4494 0 1.0
NZ_CP019894_7 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966879-966911 33 NC_010923 Neisseria lactamica plasmid pNL9, complete sequence 3131-3163 0 1.0
NZ_CP019894_7 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966879-966911 33 NC_004758 Neisseria meningitidis plasmid pJS-B, complete sequence 3381-3413 0 1.0
NZ_CP019894_7 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966879-966911 33 ADWM02000138 Neisseria meningitidis K1207 plasmid, complete sequence, whole genome shotgun sequence 4181-4213 0 1.0
NZ_CP019894_7 7.9|966745|35|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966745-966779 35 NC_010923 Neisseria lactamica plasmid pNL9, complete sequence 4920-4954 2 0.943
NZ_CP019894_7 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT 966879-966911 33 NC_010922 Neisseria lactamica isolate 3207487 plasmid pNL3.2, complete sequence 2546-2578 5 0.848

1. spacer 7.6|966545|34|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 0, identity: 1.0

aatctcttgagaaaaagcaggaacaaaaaaagcg	CRISPR spacer
aatctcttgagaaaaagcaggaacaaaaaaagcg	Protospacer
**********************************

2. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

3. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_004758 (Neisseria meningitidis plasmid pJS-B, complete sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

4. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to ADWM02000138 (Neisseria meningitidis K1207 plasmid, complete sequence, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgatttcgtcaccaac	Protospacer
*********************************

5. spacer 7.9|966745|35|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 2, identity: 0.943

agattatagggggcataaattcaagtcggctaaag	CRISPR spacer
agattatagagggcataaattcaagtcggttaaag	Protospacer
*********.*******************.*****

6. spacer 7.11|966879|33|NZ_CP019894|PILER-CR,CRISPRCasFinder,CRT matches to NC_010922 (Neisseria lactamica isolate 3207487 plasmid pNL3.2, complete sequence) position: , mismatch: 5, identity: 0.848

aaggcagaaattgattttgatttcgtcaccaac	CRISPR spacer
aaggcagaaattgattttgattttgtaacaaca	Protospacer
***********************.** ** *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1000808 : 1014012 13 uncultured_Mediterranean_phage(11.11%) tRNA NA
DBSCAN-SWA_2 1354887 : 1393870 52 Acinetobacter_phage(21.21%) tail,terminase NA
DBSCAN-SWA_3 1539100 : 1547069 8 Cafeteria_roenbergensis_virus(16.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage