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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019732 Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 chromosome, complete genome 2 crisprs RT,csa3,PD-DExK,DEDDh,DinG,cas3,WYL 0 0 22 0
NZ_CP019733 Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP019732
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019732_1 1819056-1819289 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019732_2 1819896-1820012 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31829 : 41522 7 Liberibacter_phage(50.0%) transposase NA
DBSCAN-SWA_2 220722 : 324800 104 Pseudomonas_phage(52.63%) terminase,head,tail,capsid,integrase,portal,transposase,protease,lysis attL 246987:247046|attR 323488:324861
DBSCAN-SWA_3 466369 : 539300 65 Pseudomonas_phage(42.42%) tail,plate,tRNA,transposase,lysis NA
DBSCAN-SWA_4 694783 : 756612 39 Ralstonia_phage(28.57%) transposase,protease NA
DBSCAN-SWA_5 1066497 : 1119005 44 Pseudomonas_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_6 1747118 : 1751908 7 uncultured_Caudovirales_phage(83.33%) NA NA
DBSCAN-SWA_7 2031347 : 2041534 10 Burkholderia_virus(37.5%) NA NA
DBSCAN-SWA_8 2066874 : 2122443 50 uncultured_Caudovirales_phage(57.14%) tRNA,integrase,transposase attL 2072613:2072627|attR 2122809:2122823
DBSCAN-SWA_9 2151730 : 2221506 59 Leptospira_phage(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_10 2448796 : 2495618 42 uncultured_Mediterranean_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_11 2660386 : 2716330 44 uncultured_Caudovirales_phage(22.22%) tRNA,transposase,protease NA
DBSCAN-SWA_12 2719383 : 2752506 26 Acidithiobacillus_phage(25.0%) transposase NA
DBSCAN-SWA_13 3179217 : 3239573 40 Bacillus_phage(22.22%) transposase NA
DBSCAN-SWA_14 3297691 : 3354812 59 uncultured_Caudovirales_phage(50.0%) integrase,transposase attL 3299477:3299536|attR 3353342:3355008
DBSCAN-SWA_15 3611397 : 3651316 32 Bacillus_phage(28.57%) transposase NA
DBSCAN-SWA_16 3657748 : 3718804 46 Acidithiobacillus_phage(50.0%) integrase,transposase attL 3660826:3660885|attR 3718830:3718941
DBSCAN-SWA_17 3934093 : 3938636 7 uncultured_Caudovirales_phage(50.0%) integrase,tail attL 3934961:3934975|attR 3941476:3941490
DBSCAN-SWA_18 4257971 : 4303708 35 Planktothrix_phage(40.0%) plate,transposase NA
DBSCAN-SWA_19 4382363 : 4422537 37 Erysipelothrix_phage(100.0%) integrase,transposase attL 4382974:4383033|attR 4415136:4416155
DBSCAN-SWA_20 4717079 : 4725031 9 uncultured_Caudovirales_phage(71.43%) tRNA NA
DBSCAN-SWA_21 6020679 : 6090374 57 Bacillus_virus(28.57%) holin,transposase NA
DBSCAN-SWA_22 6392496 : 6522323 92 Acidithiobacillus_phage(18.75%) integrase,transposase,protease attL 6458209:6458224|attR 6520489:6520605
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage