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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018420 Pseudomonas veronii strain R02 chromosome, complete genome 4 crisprs DEDDh,RT,DinG,csa3,cas3,WYL 1 0 10 0

Results visualization

1. NZ_CP018420
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018420_1 734166-734242 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018420_2 5116492-5116590 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018420_3 5156490-5156565 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018420_4 5701472-5701557 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP018420_4 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder 5701497-5701532 36 NZ_CP018420.1 5701239-5701274 1 0.972
NZ_CP018420_4 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder 5701497-5701532 36 NZ_CP018420.1 5701695-5701730 1 0.972
NZ_CP018420_4 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder 5701497-5701532 36 NZ_CP018420.1 5701892-5701927 1 0.972

1. spacer 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder matches to position: 5701239-5701274, mismatch: 1, identity: 0.972

gatgagggagtgtcagtcagtcattgtttggctgat	CRISPR spacer
gatgagggactgtcagtcagtcattgtttggctgat	Protospacer
********* **************************

2. spacer 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder matches to position: 5701695-5701730, mismatch: 1, identity: 0.972

gatgagggagtgtcagtcagtcattgtttggctgat	CRISPR spacer
gatgagggactgtcagtcagtcattgtttggctgat	Protospacer
********* **************************

3. spacer 4.1|5701497|36|NZ_CP018420|CRISPRCasFinder matches to position: 5701892-5701927, mismatch: 1, identity: 0.972

gatgagggagtgtcagtcagtcattgtttggctgat	CRISPR spacer
gatgagggactgtcagtcagtcattgtttggctgat	Protospacer
********* **************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1345175 : 1425530 83 uncultured_Caudovirales_phage(25.0%) transposase,tail,lysis,plate,tRNA,holin NA
DBSCAN-SWA_2 1501196 : 1507457 8 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_3 1619640 : 1624720 7 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_4 1776323 : 1808534 44 Pseudomonas_virus(67.65%) tail,holin,head,terminase,capsid,plate,tRNA,integrase,portal attL 1772342:1772356|attR 1795936:1795950
DBSCAN-SWA_5 2868619 : 2880431 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 3454589 : 3530952 57 Cronobacter_phage(33.33%) integrase,plate attL 3495087:3495103|attR 3540988:3541004
DBSCAN-SWA_7 3678805 : 3713591 48 uncultured_Caudovirales_phage(35.0%) integrase,tail,head,lysis,terminase,capsid,plate,holin,portal attL 3670674:3670688|attR 3719000:3719014
DBSCAN-SWA_8 4285186 : 4295214 12 uncultured_Caudovirales_phage(71.43%) protease,tRNA NA
DBSCAN-SWA_9 4659122 : 4712251 74 Pseudomonas_phage(58.49%) tail,lysis,terminase,capsid,integrase attL 4658913:4658962|attR 4711442:4711491
DBSCAN-SWA_10 6319925 : 6373188 45 Tupanvirus(20.0%) holin,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage