CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020046	Thiomonas intermedia strain ATCC 15466 chromosome, complete genome	13 crisprs	csa3,DEDDh,DinG	3	4	4	0
NZ_CP020047	Thiomonas intermedia strain ATCC 15466 plasmid pXI1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020046_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_1

627772-627864

Orphan

Consensus_repeat	Method
GGGAGGGCTTATGCAGATCACGCGCAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_1

>merge|NZ_CP020046|1|627772-627864|CRISPRCasFinder
GGGAGGGCTTATGCAGATCACGCGCAGCGCTGTTTACTCCTCCCCCACAGAGTGGGGGAGGTCGGGAGGGCTTACGCAGATCACGCGCAGCGC

>NZ_CP020046|1|1|627772-627864|CRISPRCasFinder
GGGAGGGCTTATGCAGATCACGCGCAGCGC	TGTTTACTCCTCCCCCACAGAGTGGGGGAGGTC
GGGAGGGCTTACGCAGATCACGCGCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079415897.1\|617073_617343_-\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|378159
NZ_CP020046.1\|WP_079415914.1\|627964_628336_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237786
NZ_CP020046.1\|WP_079415924.1\|633128_633632_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP020046.1\|WP_079415927.1\|635890_638224_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP020046.1\|WP_079415929.1\|638929_640048_-\|ionic-transporter-y4hA	unknown	unknown	gnl\|CDD\|223464
NZ_CP020046.1\|WP_179947970.1\|632229_633030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238858
NZ_CP020046.1\|WP_079420273.1\|625684_626215_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP020046.1\|WP_079415928.1\|638307_638814_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP020046.1\|WP_079415908.1\|623408_624689_+\|putative-Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|369349
NZ_CP020046.1\|WP_079420275.1\|627009_627609_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
NZ_CP020046.1\|WP_079415926.1\|633835_635878_+\|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP020046.1\|WP_079415918.1\|629267_631529_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP020046.1\|WP_079415910.1\|624712_625618_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP020046.1\|WP_079415916.1\|628343_629225_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP020046.1\|WP_079415906.1\|618419_619463_+\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP020046.1\|WP_079420271.1\|619450_623293_-\|DUF748-domain-containing-protein	unknown	unknown	gnl\|CDD\|377502
NZ_CP020046.1\|WP_079415920.1\|631837_632221_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079415895.1\|615859_617077_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_CP020046.1\|WP_154048517.1\|617422_618109_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380313
NZ_CP020046.1\|WP_079415893.1\|615517_615796_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226079

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079415897.1\|617073_617343_-\|DUF1992-domain-containing-protein	gnl\|CDD\|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	0.000377596
NZ_CP020046.1\|WP_079415914.1\|627964_628336_-\|YraN-family-protein	gnl\|CDD\|237786	PRK14673, PRK14673, hypothetical protein; Provisional.	2.86068e-49
NZ_CP020046.1\|WP_079415924.1\|633128_633632_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	1.53742e-26
NZ_CP020046.1\|WP_079415927.1\|635890_638224_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP020046.1\|WP_079415929.1\|638929_640048_-\|ionic-transporter-y4hA	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	2.59972e-69
NZ_CP020046.1\|WP_179947970.1\|632229_633030_+\|hypothetical-protein	gnl\|CDD\|238858	cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.	1.59938e-61
NZ_CP020046.1\|WP_079420273.1\|625684_626215_-\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	2.86903e-115
NZ_CP020046.1\|WP_079415928.1\|638307_638814_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	9.49082e-20
NZ_CP020046.1\|WP_079415908.1\|623408_624689_+\|putative-Na+/H+-antiporter	gnl\|CDD\|369349	pfam07399, Na_H_antiport_3, Putative Na+/H+ antiporter. This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. Many members carry 11 or 12 transmembrane regions, suggesting that they might be transporters. One family member, UniProtKB:Q821X2 is classified by TCDB as being an NhaE type of Na+/H+ antiporter.	0
NZ_CP020046.1\|WP_079420275.1\|627009_627609_-\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	1.02877e-114
NZ_CP020046.1\|WP_079415926.1\|633835_635878_+\|type-IIA-DNA-topoisomerase-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP020046.1\|WP_079415918.1\|629267_631529_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.07133e-62
NZ_CP020046.1\|WP_079415910.1\|624712_625618_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	6.2761e-121
NZ_CP020046.1\|WP_079415916.1\|628343_629225_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	2.05581e-98
NZ_CP020046.1\|WP_079415906.1\|618419_619463_+\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	1.10846e-117
NZ_CP020046.1\|WP_079420271.1\|619450_623293_-\|DUF748-domain-containing-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	1.23909e-30
NZ_CP020046.1\|WP_079415895.1\|615859_617077_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP020046.1\|WP_154048517.1\|617422_618109_-\|nitroreductase-family-protein	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	2.04544e-33
NZ_CP020046.1\|WP_079415893.1\|615517_615796_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	4.19574e-28

>NZ_CP020046.1|WP_079420275.1|627009_627609_-|phosphoheptose-isomerase
MLEQRIQQHFFDSADLKYQAAESLTGPIARAVDVLATAVSNGHKILICGNGGSAADSQHLAAELVGRFERERPELAAIALTTDTSTLTAVANDYGFDHVFSKQVRALGLPGDVLVAFSTSGNSSSIVEAVRSAQSREMSVLALTGRTGGRVAGLLRDVDVHIAVPHDRTARIQEVHLLTLHCLCDGLDWILMGESESTE
>NZ_CP020046.1|WP_079420273.1|625684_626215_-|inorganic-diphosphatase
MSLLDVPAGKSLPDDFNVVIEIPAHAPPVKYEVDKSSGALFVDRFMSTAMHYPCNYGYIPQTLSEDGDPVDVLVVTTIPLVHGCVVRCRPVGMLKMTDEAGVDAKLIAVPVDKLLPQYRNIQKPEDLPPELLKQIEHFFNHYKDLEAGKWVKTEGWAGVDAARAEITASAARYTAQ
>NZ_CP020046.1|WP_079415910.1|624712_625618_+|NAD(P)-dependent-oxidoreductase
MSTSTITDLPSYAVAFLGLGVMGDPMAGHLARAGHRVTVYNRTASKAQDWVRRNGGRAAPTPRAAAAGADFVFSCVGNDDDLRSVTLGAEGALAGMAPGAVFVDHTTTSADVARELGAEAHERGLFFLDAPVSGGQAGAQNGALTVMCGGDAAAFERAQPVVKAYARAVTRLGGHGAGQLCKMVNQIAIAGVVQSLSEALAFGERAGLDLNTVLQVIGKGAAQSWQMDNRGPTMIEGRYDFGFAVDLMRKDFGLCLDEARHNGARLPLLALVDQFYADVQAAGGGRLDTSSLLTRLRDKMV
>NZ_CP020046.1|WP_079415908.1|623408_624689_+|putative-Na+/H+-antiporter
MTDTLPASLQYLGAALFAVAVLHTFSTKFFESLAHRQTAHAGLWHLLGEVEVVFGFWAMVLMVFLFFSLGQHEAVAYLDSRNFTEPLFVFTIMVIAGTRPILQAASDVVNGFARVVPLRGELMFYLLVLILVPLLGSFITEPAAMTLAALLLRERVFGAAVSSRLKYVTLGVLFVNVSIGGTLTHFAAPPVLMVASTWQWNLGFMLTQFGWKAAIAVTLNALGATLLFRRELTALERTPPAQGQAAAPLRAPLSVIAVHVLFLAGVVVFAHHPVVFIPLLLFFLGFTTAYVRYQDPLMLKEGMLVGFFLGGLVVLGGLQQWWLQPLLTRMDATAVFFGATALTAITDNAALTYLGSLVQGLSPEFKYALVAGAVSGGGLTVIANAPNPAGIALLRGRFDGGAVHPLGLLGAALLPTAVAMACFWLL
>NZ_CP020046.1|WP_079420271.1|619450_623293_-|DUF748-domain-containing-protein
MSVTASSVWKGLRRVLLSLPVLIVAGLFVFYVAFGYLAVGPLAEHFLPRLAQSKLDSRATVGKVAFDPLQLNLTVDALQLSTPQGVPLAGFRQLFVDFAPVSLFKWAWTFHQIRIDRPEVNVAIAKGGAMNWDGLVRALQRGPQPAQESDSLPRVLIERLQIAGGMVRYADDDRPHPYATRLTPLNVQVNDLSTLPRARGQYAVSLQLPEQQATLRWKGYVGINPLVSGGQAELTGLDLAAAARAIPGFSDHVQIMAGRASVQAAYSAVLGDESLHWAVNDLGAQIQGLEAKTAAAQVKWQDLRLEQGKMDGSERTAQVRSLALNGLSAVAGAERLGLQSAQLQGAQLNWGRQQLGFGPLRLQGIEGQIGQAAMQAGSLQTQPGSADLAKLSVQLPQVILQDTRLQPTQDRSTPWLSLPTLEVNAVQADLRQHRLLMGAVQLDAARVQLARLANGQIDLLQALSAGAPQNRPQPEGQRAVATPQAPAAAPAWTVDIQRVATRVQALDYTDQSFKTPLQLRLSDLNLDAAAQVALPAGRPVQAQAKDLKLQIGAMQLDSARQTLARWKRLQLDPSQISVRDAGMPSVHAGALQVDGLHALVALNPDGLNWAQAFQPAAGGAARAEPVAASPASRPPDVHLKSLDLRDFSAQIDEHTGGAPIRLEVIGGQAGARNLSLDLRKSVPVHLRFALKQGGQFKASGQVAPQPLSGALQVQLQQLTLTPFGGLLAPYVRLVLTSGTASADGTVKIRPGSHGVPQVAYDGGAQVDNLALVDPDGRTPFLGWRKLAATGLHVDSAPLAVQMTALQAVEPYGRIVINPNRTLNVQAILLTRKPVSGPPPSSPGEADKPLPLALRIDRTAIVNADVDFTDQSIKPDFRVRMQKLSGVINGLSDAPDSSAQIELDGQVNDYGQARVRGHLQPFRATNDTDVTLRFRNLDMASISPYSGKFAGRAIESGRLDAKLEYKIQKAQMQGSNAFTITRLKLGPHVDSPSAVNLPLDLAIAVLENSDGVIDLDLPVHGDLNNPQFSYGGIIWHAIVNVLTKIVTAPFRALGALFGGTDDGTPQDVHFASGSAVLAPPEREKLLHIGEALVKRPRLELQVPPTFNAQRDTAALQEAAVRRQVLAKLGVTVPPDARPGPLDLGNARTRNAINALYLDQHPTSALDALKKSLPEDAGSEHGLLRAMLAQLAKSVAIPQSTLDALAQARAKAVFAALTTGTKALPVARVHLGAALQADDKAKEKGVTLTLGLSAGQGGASAPAAAAAPPAAASAAANAAQGK
>NZ_CP020046.1|WP_079415906.1|618419_619463_+|DUF2235-domain-containing-protein
MKRIALFADGTWSKPDQSDGSIATPTNVVKLSVAVAGDDGHGTAQIVFYQKGLGEQGGLWDKVTGGAFGMGISAHIRELYLFLVQNYHPGDAIYLFGFSRGAYTVRSVGGLIRNCGILRPQFVDRIDEAYALYRDRTPDSHPDAPQSKAFREAYAWPDVPIELIGVWDTVGALGIPVTPLRFWTKSLYEFHDVALSSHVRYGYQALALDERRKPFIPTLWQTQSHATDQVVEQAWFPGVHSDVGGGLPLTGLSDSALLWMADRAQRCGLALDPALLPPHGEPAAPMGSSMTLFYRLLGERERQPGIANPAGHEGVHTSTLSRHSALADYRPPALERFLAMRPVTYLP
>NZ_CP020046.1|WP_154048517.1|617422_618109_-|nitroreductase-family-protein
MQRIVDAAITSRRSIRHFLPTPVPRETVESILQVASRAPSGTNTQPWQVHVLTGAAKARLSARIMTAYDDPVQAAQHTEEYAYYPREWRSPYIDRRRKVGWDLYGLLGIAKGDKAAMHAQHGRNYRFFEAPVGLIFTIDRVMEQGSWLDYGMFLQAIMVAARGRGLDTCPQAAFTAFHRLIEDELQLDVATQQVVCGMALGWADPEAVENTLVTERAPVSDFARFLDR
>NZ_CP020046.1|WP_079415897.1|617073_617343_-|DUF1992-domain-containing-protein
MNVLAWIGETRIAQAVQEGKLDHLPGAGRPLDLTARDAALEAQARLGLELLDRARRAQTETGQDRRERAALRLLWAKALERHGRNPSKP
>NZ_CP020046.1|WP_079415895.1|615859_617077_-|nicotinate-phosphoribosyltransferase
MIIESLLDTDLYKFTMMQVVLHHFPGAQAEYRFKCRTPGVDLVSCLGEINAELDALCTLQFKPEELDYLRSLRFIKSDFVDFLALFRLNRQRIRATPAADPAARARGEIDIAIQGPWLHTILFEVPVLAIVGEIHARHAHADADLQAGLQRIDDKIAMLRTPELQDCRIADYGTRRRYSRRWQAQVLGRLRSGLGPQLAGTSNVLLAKDMGLLPLGTMAHEYLQACQALGPRLRDTQVFAFEMWAKEYRGDLGIALADVYGLQAFLRDFDLYFCKLFDGARHDSGDPFSWGEQMIAHYAKHRVDPRTKTLVFSDMLTIPKVIALYRQFHARVGLAFGIGTNLMHDLGFEAPQMVLKMTRCNGQPVAKVSDAPGKNMCDDPAYLAYLREVFQIPASQLVEHDAEDG
>NZ_CP020046.1|WP_079415893.1|615517_615796_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIHSFTCADTQALFQSQPVARFRNIERVARRKLLQLHAATELGSLRVPPGNSLEALKGNRKGQHSIRINDQWRLCFVWRQNGAHQVEIVDYH
>NZ_CP020046.1|WP_079415914.1|627964_628336_-|YraN-family-protein
MGQWWKQRAARRLGQSAEAQACADLQARGLQLVERNYRVRGGEIDLIMRDVDGTLVFVEVRARSHAAYGGAAGSVDATKRRRIVLAARHYLARLPEEPVCRFDVVTLESGALAWLPGAFAAEE
>NZ_CP020046.1|WP_079415916.1|628343_629225_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSSPTQAALAFCAQQDFPPALYMVAAPIGNLADISLRALAVLHHADHIAAEDTRVAQRLLEAYGLRKPAWRCDQHREAQAAQQIVAAISAGERVAFVSDAGTPGISDPGSRITAAVQAAGLRVMPIPGASAVTTALSASGLDLHAGFSFAGFAPEKSVALRAFLQAALQGSQVTVFFEAPHRLHACLETLHALDPQARLVIAKELSKQFETLLPCTPQAALDWLAADPRRAQGEFVVLLQPRAPQATLDGRATALLQRLAQELPASRAAAVAADLTGLKRDVLYRWLLDQKQD
>NZ_CP020046.1|WP_079415918.1|629267_631529_-|diguanylate-cyclase
MFPSSTRSLSRWLFWSAGIVVSYVVLAWLVLGVRSSELMIWPSAAVAAFAFIAQGASMAPAVLLASWLSAHLLLGWGPQASLMIAGGDALGPLLGLWVLRRRAVRWQGFEVTADAVWFIGTMGLLASGVSAAVGAAAAAFFGFGHTPMSPDLGLQWWITDMASIIVLAPVAELLRRESPETLRAAFKWEMVLLPILAVVGTLLVYLMPSGPSALPIGLASLVILPLLWTAMRLPLALSVSLNAIISLIIVTATVFQHGPMYGMLGSDRFLSMQIILMALSSAILLAGLLANERTVALKQVRDINATLEKKVNRRTAALQISQATTQAQLRFQESLLNALPNPVAFSDPQGRFTRVNVAFNLLVGLGGPEIHGRTGSQILGSTLGRIWEEMDNELLSGSLQVTREAPYLHPDHEPTVWILNKALVRDAVSRQIVGVVTSMQDITALKQLQQQLSEDEQRFRFLAEESPVPLVITRTTDAALLFSNKAADGLFRGSYAQYAGQSMRHLWGDSVDRDQLLLRLQREGGVVRGMEAQFQRLDGTEVWLLLSVTRGRYRDDDALIFAFKDITEAKARENELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGIPFAVLALDIDRFKLVNDQLGHQAGDAVIRCFAQTCMQQLRGHDICGRLGGDEFAILLPQTTRQVAFDVAQRLRLAIQEASCLPPVSQSGMTLTTSIGIAEFLPILSIKDADELLDRADQALYRAKQAGRNRVEIWTGEPAAPV
>NZ_CP020046.1|WP_079415920.1|631837_632221_+|hypothetical-protein
MFKLFRTRQTLSQPASPSARDSELRGTTLEGYHFAIRVERNPAGEAHRLIGWHGSSQGGGRVDLRREAEGLWRDGQGRQAASVDDLLAPSVRRSAAWTAQWCEVLPVGATSEPEPPSASAELHVQEP
>NZ_CP020046.1|WP_179947970.1|632229_633030_+|hypothetical-protein
MHPKPSPHRRVLMQAAAGALLLSPWLHPQPAMAGVNLAAVPIGRMDLPWWRKRFDASLKQVRHSRAELVWLGDSITQNWERNGPQPWADYQPIWQREYGRYDPLNLGFIGDTTSSVLWRLDHGQVQGLSPKVLILLIGANNLGRPHWGAPLTVPGIEAVVDKVHQLLPHTQVLLLGVLPSRRSAWISEQTLKINAALASRYAHSERVTFKDVGQVLLDPQGQPDPALYLEGHEPHQSVLLHPDAQGMERIAQAIAPTLDKLMQQAR
>NZ_CP020046.1|WP_079415924.1|633128_633632_+|heme-binding-protein
MSASLHLRLPLAIGLCAALASPVFAADPLTVTVHRLTLDAAERIAQGAIKACRAKGLQVSVSVVDRNGIVQATLRDTLAPPVSLDISRQKAFTAAMFGIKGTAMGPQAASPLALLGDGLAFTAGSVPIEAGGRMYGAVGVSGAPDGKLDEECAQAGLDAVLPDLEMQ
>NZ_CP020046.1|WP_079415926.1|633835_635878_+|type-IIA-DNA-topoisomerase-subunit-B
MASRRSPAYSESSIRVLKGLEPVRQRPGMYTRTDNPLHIVQEVIDNSADEALGGYCQHIAVTLHADGSVSVEDDGRGIPFGMHPDENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGVSVTNALAARLEVTVWRDGQVAHLVFAGGEVIEALTLRKTTRDERKNGTRVRVWPDAKYFDSPHLPLAELTHLLRSKAVLLPGVKVDLMQEKTGDTTHWEYARGLRDYLLGTLPAEPFIDLFEGEHYASASDQESFAEGEGAAWCVAFTEEGALLRESYVNLIPTPAGGTHEAGLREGLFQAVKGFIELHNLQPKGVKLLPEDVFARASFVLSARVLDPQFQGQIKEKLNSRDALRLVGQAVRPVLELWLHERVDQGRKLAELVIRQAQSRLRASQKVEKKKGSGVAVLPGKLTDCESRDTDRTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEVERDRLFANTEIHDIAVAIGVDPHGKDDLPDLSNLRYGRICILSDADVDGSHIQVLLLTLFFRHFPRLIERGHVCVARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKEGLKDGAWQISRFKGLGEMSAEQLWDTTLNPDTRRLYRVRPDDAEAPPDAGPPQVEGSPLGEQRAPASVGATELLFHQLMGKGEAQARRALMEEYGDQIDVDI
>NZ_CP020046.1|WP_079415927.1|635890_638224_+|DNA-topoisomerase-IV-subunit-A
MSEQAPLEFDNRPEDDADSLALGDYARSAYLDYAISVVKGRALPDVCDGLKPVQRRILYAMWRMGLAFDAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGSRDGDGAAAMRYTEARLAPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGASGIAVGMATEIPSHNLREVASACVALLKNPRLELAEALALMPGPDFATGGQLISSPQDIAAAYASGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQQVLEEIEELSNPKIRPGKKALAPEQIALKTSLLGLLDTVRDESGREAAVRLVFEPRSSRIDVAEFVNTLLARTSLETSVPINLVMIGADGKPRQKGLMDMLREWVAYRRDTVQRRSRHRLEQVDARIHILQGRQQVLLNLDEVIDTIRNSDDPKPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRAEQADLQKLLADDRAMTRRIISEIEADAKQFGDDRRTLIQAEQRAVAEVKVVDEPVTVIVSQKGWLRTQKGHGLTLDTLAFKPGDALYATFECRSVDPLVVLGSDGRAYSFDVADLPGGRGDGQPVTTFIELAPGTQALHYLAGARTTALLLWTAQGFGFVARLGDALSRQRAGKTFMTLEDGDLPQRPLVLGIDGGDSPTGRLALLSAGGRLLLYPAAEVKTLSRGGRGVTLMALDAKEALLSIAHLAGEREALLVSGKGRSGTERSTSLSSTQQALYLGKRAKRGRKLEITFKPERLDRG
>NZ_CP020046.1|WP_079415928.1|638307_638814_-|OmpA-family-protein
MFFQDDDNHVPIVGVVLATVLATVAVIVGVAIKDGGGAGAMQAASAPAMASSAAPAADADGARVVVENGVVKFYFASGKADLAAGADAALKQVGEAVAQGHTAVISGYHDATGSAALNAELAKKRALAVRDALVAQGVPADRITLEKPAETTGGASAAEARRVEVTVK
>NZ_CP020046.1|WP_079415929.1|638929_640048_-|ionic-transporter-y4hA
MNHDVPNLVPSASTSWIDRLFVALPFVGLGVLALALAQPGQSFVLLLSAFALIGAVIAAVHHAEVVAHRVGEPFGTLVLALAVTIIEAALIVSMMLTADPAKSATLTRDTIYATVLIITGGVIGLSLLAGGLRHHVQAFHTESARPALAILMALSALTLVLPRFTTSAPGGQYTVPQLVFTAVASLVLWGVFVFGQTVRHRDYFLDLEGVGEAHAGAHHPSRRDAWISLLGLLLALVTVVGLAKTLSPSIEAKVLGAGLPHAVIGLIIAMLVLAPETVAAVRAALANRLQTSLNLALGSALASIGLTIPVVVSVAIYLGLPLDLGLHGKDLVLLLLSLLVSLVTLGSRRTDFMLGAVHLVVFAAFLFLTLAP

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Crispr_ID: NZ_CP020046_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_2

980842-980942

Orphan

Consensus_repeat	Method
GGGGGAGGAGTAGAAGGCGCTGCGCGTGATCCGCATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_2

>merge|NZ_CP020046|2|980842-980942|CRISPRCasFinder
GGGGGAGGAGTAGAAGGCGCTGCGCGTGATCCGCATAAGCCCTCCCGGCCTCCCCCACGGGGTGGGGGGATGAGTAGAAGGCGCTGCGCGTGATCCGCATA

>NZ_CP020046|2|2|980842-980942|CRISPRCasFinder
GGGGGAGGAGTAGAAGGCGCTGCGCGTGATCCGCATA	AGCCCTCCCGGCCTCCCCCACGGGGTG
GGGGGATGAGTAGAAGGCGCTGCGCGTGATCCGCATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416509.1\|981881_983252_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP020046.1\|WP_079416499.1\|976325_976874_-\|response-regulator	unknown	unknown	gnl\|CDD\|226933
NZ_CP020046.1\|WP_079420338.1\|973945_975262_+\|ergothioneine-biosynthesis-protein-EgtB	unknown	unknown	gnl\|CDD\|274581
NZ_CP020046.1\|WP_079416489.1\|970168_970834_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181009
NZ_CP020046.1\|WP_079416497.1\|975321_976314_+\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|378355
NZ_CP020046.1\|WP_079416501.1\|976885_978184_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020046.1\|WP_154048423.1\|991982_992864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416513.1\|984418_985621_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NZ_CP020046.1\|WP_079416511.1\|983616_984408_+\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|237100
NZ_CP020046.1\|WP_079416491.1\|970920_972138_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173844
NZ_CP020046.1\|WP_079416493.1\|972304_972997_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NZ_CP020046.1\|WP_079416507.1\|981174_981885_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP020046.1\|WP_079416515.1\|985654_986602_-\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|176103
NZ_CP020046.1\|WP_169836750.1\|986686_988798_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP020046.1\|WP_079416521.1\|989974_991093_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP020046.1\|WP_079416523.1\|991390_991903_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP020046.1\|WP_079416503.1\|978506_979490_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NZ_CP020046.1\|WP_079416495.1\|973021_973879_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP020046.1\|WP_079416519.1\|988808_989978_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NZ_CP020046.1\|WP_079416505.1\|979500_980715_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340928

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079416509.1\|981881_983252_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	9.28442e-74
NZ_CP020046.1\|WP_079416499.1\|976325_976874_-\|response-regulator	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	4.47076e-65
NZ_CP020046.1\|WP_079420338.1\|973945_975262_+\|ergothioneine-biosynthesis-protein-EgtB	gnl\|CDD\|274581	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB. Members of this family include EgtB, and enzyme of the ergothioneine biosynthesis, as found in numerous Actinobacteria. Characterized homologs to this family include a formylglycine-generating enzyme that serves as a maturase for an aerobic sulfatase (cf. the radical SAM enzymes that serve as anaerobic sulfatase maturases). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP020046.1\|WP_079416489.1\|970168_970834_+\|enoyl-CoA-hydratase	gnl\|CDD\|181009	PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.	2.09203e-45
NZ_CP020046.1\|WP_079416497.1\|975321_976314_+\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|378355	pfam10017, Methyltransf_33, Histidine-specific methyltransferase, SAM-dependent. The mycobacterial members of this family are expressed from part of the ergothioneine biosynthetic gene cluster. EGTD is the histidine methyltransferase that transfers three methyl groups to the alpha-amino moiety of histidine, in the first stage of the production of this histidine betaine derivative that carries a thiol group attached to the C2 atom of an imidazole ring.	3.25104e-150
NZ_CP020046.1\|WP_079416501.1\|976885_978184_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.83699e-22
NZ_CP020046.1\|WP_079416513.1\|984418_985621_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.57952e-52
NZ_CP020046.1\|WP_079416511.1\|983616_984408_+\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|237100	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional.	6.90304e-147
NZ_CP020046.1\|WP_079416491.1\|970920_972138_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	4.07996e-81
NZ_CP020046.1\|WP_079416493.1\|972304_972997_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	9.68624e-83
NZ_CP020046.1\|WP_079416507.1\|981174_981885_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	3.59011e-78
NZ_CP020046.1\|WP_079416515.1\|985654_986602_-\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.35216e-83
NZ_CP020046.1\|WP_169836750.1\|986686_988798_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP020046.1\|WP_079416521.1\|989974_991093_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_CP020046.1\|WP_079416523.1\|991390_991903_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	2.82806e-78
NZ_CP020046.1\|WP_079416503.1\|978506_979490_-\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.92834e-180
NZ_CP020046.1\|WP_079416495.1\|973021_973879_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.49497e-94
NZ_CP020046.1\|WP_079416519.1\|988808_989978_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP020046.1\|WP_079416505.1\|979500_980715_-\|MFS-transporter	gnl\|CDD\|340928	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily. This family is composed of Methanocaldococcus jannaschii MFS-type transporter MJ1317, Mycobacterium bovis protein Mb2288, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.10989e-112

>NZ_CP020046.1|WP_079416505.1|979500_980715_-|MFS-transporter
MPLADPSRVNRLSRTVWLLGFVSLFMDMSSELVHALLPVYMTTVLGLSVLSVGVVEGVAEATASMLKVASGAWSDRLGSRKALAVAGYGLSALTKPLFPMASGAGEVIAARFIDRIGKGLRGAPRDALVADATPPGQRNAAYGLRQSLDTVGAVLGPLAAIGLLAVYADKLRLVLWFAVIPAAIAVAILIFGVREPRRVRVHAAAAQAGRKAWDWRAARELPPAFWRVVALAALFTLARLTEAFLVLRGDQIGVSVAWIALVTLVLSLAYALSAYPVGLLAARWGRKRLFGLGLAVLALAMVLLGGVLPLGMPGFWLGVALWGLHMGLTQGLLSAAVAESAPPDLRGTAFGLYHLTIGLMQLIAAIGAGWLWQTLGSGTLFSLAALLALLCLAALWLGLHEPSR
>NZ_CP020046.1|WP_079416503.1|978506_979490_-|quinone-oxidoreductase
MTKTHAIRFDQHGGPDVLQWRELELGAPGPGQVLVRQEAVGLNFIDVYHRTGLYPQPLPGSLGGEAAGVVEAVGPGVSEVAVGDRVGYCTGTPGAYAQRRIVPVAPLIKLPDDITFEVAAASMLKGLTAYYLLHRTRALQAGDVALFHAAAGGVGLIAGQMARAMGATLIGTAGSAQKCALALENGYAHAIDYVHDDFVARVKDLTAGRGLPVVYDSIGRDTWERSLACLQPFGLMVSFGNASGAVPPFTITDLAAAGSLYVTRPTLGTHMADPAVKQQMADALFALIRSGQVQIHINQRYPLADAAQAHRDLQARKTIGSTVLLPH
>NZ_CP020046.1|WP_079416501.1|976885_978184_-|HAMP-domain-containing-histidine-kinase
MPMSSRLPHLPLIRSGATPPLPSVTLTRLLAARVVMLLAELAVLPWAHHFLDITWPLYKVLGLIGLQAGLGLVLWRQSRSARGLGAFGGFVHLLADALILALLVYWSGGEVNPIIFLLLVPLILSAVALPWLYVWIMTATVILLYSLLSFFPAPQTEACGMMTGVLSEHLSGMWGNFLITALLVAAVVARLSAALREREVELARSREVALRDQHLFALGMQAAAAAHELATPVSTLAMTVDDLQADYAGDDELGPELQRMQAQVAQIRTVLGHITAAAGAARSRSGQTETLAHWLEQTLEHWHLMRPQSQADLALLTAGAPPELRVDAGLNAALVSLLNNAADASPDAVAVEAEWEAAFLRVSVLDRGPGLPDDRLARAGYDFVSTKGEARGLGLALARAGIERLGGTLTVSRREGGGLSATLQWPRAQTPT
>NZ_CP020046.1|WP_079416499.1|976325_976874_-|response-regulator
MNLLLVEDDSALAAATRNSMERRGIAVWHADSASAARALIGAAAFDAAVLDLRLSGDSGLTLIAPLREAYPALRILLLTGYASIATAVDAIKLGATNYLPKPATVNDILAALEQDAPEADRPVTAQPLPVERLEWEHIQKVLAEHDGNISATARALQMHRRTLQRKLLKHPVRETSSDPAAR
>NZ_CP020046.1|WP_079416497.1|975321_976314_+|L-histidine-N(alpha)-methyltransferase
MTPQTATALHPPDSNGLDPETIPKAFAEQVLEGLASHPKRIPSTWFYDHRGSELFEQITELNEYYLTRTETALLRGLRADLARLPAGAAVIEFGSGSSRKTPLLLDALQTPASYTAIDISGDFLRQSVRGLQLRYPQMNVQTLEADFTAPLSWPAALEAAVRQQPRIGFFPGSTIGNFTPEQAVRFLHGAAQFLGPGAQLLVGVDGTQDKARLLPAYDDARGVTAAFNRNLLIRINRELGADFNPQAFRHVARFDTARSRIEMHLLSPTPQTVRLLGQRFTFAEGETLHTENSYKYPVAMFQRMAHASGWTPHQHWLAPGAEVALHWLQC
>NZ_CP020046.1|WP_079420338.1|973945_975262_+|ergothioneine-biosynthesis-protein-EgtB
MPTLDLALPPHAHDALPLNTSRAGRLLESLLHTRARSVSLVEGLSDADCTVQSMPDASPAKWHLAHTTWFFEEFVLAPHLPGYRGFDPAFRYLFNSYYDTVGPRHPRPQRGLLTRPTLEHILAFRAHVDAALQKLPPGAAPAALLDLGRHHEQQHQELLLTDLLHLFAQNPLHPAYRPLPATLPAGCTPDALRWLRFPGGLTEIGHADEGFAFDNEGPRHRVWLDDYALAHRPVCNADWLDFMADDGYATPTLWLADGWRWVQEQGVRAPAYWQAHDDGFYTEAMTLHGLQPLLPQAPVCHLSFYEADAYARWAGARLPTEFEWEAAAGRQALSAATPPQFADHPWRLPLAVGSAPENDLQDLWGGVWEWTASAYLPYPGFRPAPGAVGEYNGKFMSGQMVLRGGSCATPPGHLRPTYRNFFYPHQRWQFTGLRLARG
>NZ_CP020046.1|WP_079416495.1|973021_973879_+|fumarylacetoacetate-hydrolase-family-protein
MKFVRYGRNGQEQPGLIDAQSRLRSLGGLVDDIDTRVFGPSGRQALRRIDAEQLPLVTGRPRLGVPFVGISKFIAIGLNYRDHANEAHMAIPASPIVFNKWTTCLSGPNDAVLRPPGAHKLDWEVELGVVIGREARFVREADALKHVAGYCLVNDVSERAYQLEQGSQWGLGKGCDTFGPVGPWLVSRDEIADPQDIDLWLDVNGERMQSGNTRDMIFGVAYLVAYLSRYMTLLPGDLIATGTPPGVGMGRRPPRYLQPGDVVTLGSPQLGAQRQAIRAASRVGV
>NZ_CP020046.1|WP_079416493.1|972304_972997_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MIDLYSWATPNGHKIHILLEELGLPYRVHGVNIGRGEQFAPDFLAISPNNKIPALVDADGPDGQPLSVFESGAILLYLAEKTGRFLGTGPRARIATLEWLMWQMGSIGPMLGQAHHFRQYAPQKIDYAIDRYTHEAHRLYGVLDRRLASQPYLAGPDYTIADIATFPWCRSAANQGIAWSEFPHAKRWFDAIAARPAVQRGVQVLADARPPEMDATAREHLFGRTQYQRR
>NZ_CP020046.1|WP_079416491.1|970920_972138_+|acyl-CoA-dehydrogenase-family-protein
MPPQTMDTAPSPRVSTLQTRLHRFLHTVVLPQESAINTSMRLGASHPEQTVNAQLALIRQKAQLAGLWNLFLPTSPRASQGLSHWEYAPMVEAMGHIAWATDLFNSAQPDAGNMQLLDSYASEALKDAWLDPLLRAETRSAWAAAEPDAALHQPDSLQTHAKLEGDHWHLNGHKTWVQGVLDPRTASLLVLCRTDAEAALHRQFSVLLVPIQADGVHIGRQLHGWGMAPSVLAEVTFDGVRVPAAHLVGQPGQGLEMLQARQRIVGLHDALWSLGAAERALDLLIARLQTRRIGEQLAIHHPVWQQRIARTRTGLDTTRMLARRSAWQMDQNDSHLPLQELAMLQSLALPLALDAVQWSIVAHEADALDDSLPLAGLSAQLRLMQQLTPPIETLHAQIAQGELLR
>NZ_CP020046.1|WP_079416489.1|970168_970834_+|enoyl-CoA-hydratase
MSAELRAERQGDCLVLRLHHPETRHALSAALCAAALEALTTAQRDPDIRAVVLTGSTPHFCSGLHDLDALEALHDCILALRDCEPLVVGAVEGQARGAGAALALACDLLVLADDAQLQLIDPLLPHRDVGGAQWLAARLLPRPVCNEAALPGPGLGAVRLHQLGVANRLCPPGLSVQTALQLIEGIPRMSGSPRKNLPNPQGHESALHVHLSAQLLTNPRD
>NZ_CP020046.1|WP_079416507.1|981174_981885_+|response-regulator
MRLLLVEDDMMIGESVLDALRGEGYAVDWVRDGALADSALRTEQYDLVLLDLGLPKMDGIAVLKALRARRETTPVLIATARDAVSARITGLDAGGDDYVLKPFDLDELSARIRALLRRAAGRAEPVFSFGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRTQLEEKLYSWKDEISSNAVEVYVHSLRKKLGPDLIRNIRGMGYMIAKEPAARPNLVEGGGTGDAA
>NZ_CP020046.1|WP_079416509.1|981881_983252_+|two-component-sensor-histidine-kinase
MKSLRARLLLLLSVAVTLAALVQALAVFRNAMNEADAVFDYHLQQLALSLASGDMGLPGFGPDVSAGNNVDYVVQVWAPDGKRIYVSRPRSDLPSQAVLGYTNVQVGNDQWRVFSMQAGGRTIQVGQSTATRQALALGFALRSIWPMAVIAPLLLLAVAWVVRRSLRPLSDLSLELESRAATSFDPLDPHPVVSEMRPVVRAMNGLFARTRQAFETQRMFVADAAHELRSPLAALKVQVQMLGRAHDDGQRGVALARLESGIDRASHLVEQLLLLARNESGAEEALGTVSLLDAARLALSDTAELAQTRGVDAGLEDAEDCAVLAPPDGLRILVRNLVDNALRYTPAGGRVDVRVRHEMQAVNPASAAPQRVAVLEVNDAGPGIPVEERERVFDRFYRRDGSPAGGSGLGLAIVRSVADRCGARVELGTADLGGLQVRVVFPAVHAVHAEQRSGAD
>NZ_CP020046.1|WP_079416511.1|983616_984408_+|3-hydroxybutyrate-dehydrogenase
MTSTLSLKDKTAIVTGAASGIGKEIAETYAKVGAKVAIADLNLDAANAVAEAINKAGGRAMGVAMNVTDEAQVNAGCEAVAKAFGPVDILVSNAGIQIVNPIENFAFADWKKMLAIHLDGAFLTTKAVLPGMYAKKGGVVIYMGSVHSHEASKLKSAYVTAKHGLLGLARVLAKEGGPKGVRSHVICPGFVRTPLVDKQIPEQAKELGITEDEVIKNVMLKDTVDGEFTTTQDIASLALFLAAFPTAALTGQSIIASHGWCMN
>NZ_CP020046.1|WP_079416513.1|984418_985621_+|patatin-like-phospholipase-family-protein
MSATATRRKPRAPIATPSCRADAILAQVRNYDRVALVLQGGGALGAYQCGVVQALEDCGVHPNWVAGISIGSINAALMAGNAPGQRTAALQNFWETVTQQPILPTLPWEHGAALGWIPESLQPQLAAWQGLRAILEGQRGFFLPRWPLGGQRPGQASFYDTAPLRDTLTRLIDFDRLNSGETRISVGAVNVRTGNLVVFDSAEMRLGPEHIMASGALPPGFAAVEIDGEFYWDGGLVSNTPLSQVLGGHPSHHTLVFQVDLWSAEGEVPQTLLDVAERQKDIQYSSRTRAITTTLQKAQQQRRILRELLDRIPASQRKNDALCRQVREMAQDKRYNVIHLIYRDKAFDGQGKDFNFGRAEMRSHWQSGLDDMHRTLDHPDWFALPGAELGFVTYDVHTQA
>NZ_CP020046.1|WP_079416515.1|985654_986602_-|hydrogen-peroxide-inducible-genes-activator
MTLTELRYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELDVRLFERGGNEVSVTPIGESIVEQAQRVIEQAASIKEIAKRGKDPLAGPLRLGVIYTVAPYLLPELVRNVIARTPQMPLLLQENFTTRLLEMLRTGELDAAILAEPFPDQGLAVSPLYDEPFVVAVPRGHAMAQCKALSAEAIKDETMLLLGTGHCFRDHVLEVCPEFARFSPSSEGIRKSFEGSSLETIKHMVASGMGITVVPKLSVPRQDVPHAADPSTDHVCYVPFDEPPPTRRVVLVWRKSFTRHQAIVALRQAIMACDLRGVTMLTP
>NZ_CP020046.1|WP_169836750.1|986686_988798_-|ATP-dependent-DNA-helicase-RecG
MSASPRSPKSPRPAGSGGARSAALERLGLRSDWDVALHLPLRYEDETRLTALDALCDGAVVTADAVVIDAQAQGRAPRRQLLVHLRDAGSAQETLTLRLFHFYPHQLKTLQPGVRLRVHGQVRQGLFGWEMVHPGWKTVDEHAPLPTTLTPVYPTTAGLPQSYLRKAVAGALQRLDGRDTVPQDERARHHLPDLAASLRILHAPPSSALAALEAGEHPAQRRLKFDELLAQQLAQQQARTQRLRRKSPALPVADGDAPLPQRLRAALPFTLTAAQERCVAEISADLTQTAPMHRLLQGDVGSGKTVVAALAAAQAMAAGWQCAIMAPTEILAAQHARKLADWLEPLGVGVAWLSGSQSRKEREAELLRVASGQAQLVLGTHAVIQAQVRFARLALAIVDEQHRFGVAQRLALRDSLLAGTQGSGLQPHLLMMSATPIPRTLAMAMFGDLDVSTIDTLPPGRSPVRTTVVSAERRDDLIERVGGLIAQGRQAYWVCPLVEESETLDLQNAVATHAELSAALAAPGQAAARVGLLHGRMKAGEKRATMQAFSAGEIGLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGAAQSDCVLLFTSPLSPTARERLAAMRELADGFALAQKDLELRGPGELLGLRQSGVPGLRYADLALDATLLEAARDTAQRLLQSAPEAARQHVARWLGEGFDWLSA
>NZ_CP020046.1|WP_079416519.1|988808_989978_-|deoxyguanosinetriphosphate-triphosphohydrolase
MTVAAQTLQASVLAAYACSDATSRGREHAEPPASDRTGYQRDRDRIIHCTAFRRLEYKTQVFLNHEGDLFRTRLTHSLEVAQIARSIARALRLNEDLTEALALAHDLGHTPFGHAGQDALGACMRQYAPQGGGFEHNLQSLRVVTTLEERYAAFNGLNLSFEAREGVLKHCSRRNAPHLGEIGLRFLHGGQPSLEAQITNLADAIAYNNHDIDDGLRAGLIDLEELQTVPFFAGHLDAVQRAYPAVQGRRRVAETIRRMISSLIGDLVDETTRRVGQAGVDSPDAVRAAPPLASFSAPVQQQLQQLQHVLLHRLYRHPDVLRNTTKAQRLLTELFEAYRADARLLPRAYQRDDAARQPRAIADYLAGMTDRFAIREHQRLFSMRDWPVY
>NZ_CP020046.1|WP_079416521.1|989974_991093_-|3-dehydroquinate-synthase
MTTVRIALDSRAYDIRIATGLLDAPDTFAAVSAPKGTALVVTNTTVAPLYAARLEQSLQPHFARVLRCTLPDGEEYKTWDTLNQIFTDLLRHQCDRKTTLFALGGGVIGDMTGFAAASYMRGVPFVQVPTTLLAQVDSSVGGKTAINHPLGKNMIGAFYQPRLVVADLATLHTLPPRELSAGLAEVIKHAAIADVDFLDWLELHIDALMAQDDAAMAEAVARCCRIKAHVVAQDETEAGLRAILNFGHTFGHAIEAGMGYGNWLHGEAVGAGMVLAADLSVRLGLLAPADAERLARLIARAGLPVRAPDLGAERWAEWMQVDKKTEGGEVRFVLLAGLGRPVLRAAPMEEAQASIAAHLQTPLQPHQTAASA
>NZ_CP020046.1|WP_079416523.1|991390_991903_-|shikimate-kinase
MGAGKTTVGRTLAQRAGLRFIDSDHEIEREQGCTIAALFSRLGEAGFRDIEARAIDALTQRDGIVLATGGGAVLRPENRKALRERGTVVYLRASPDDLAHRLRHDRTRPLLQQGDARTKLQELFRVRDPLYRETAHFVMDTGRPSPALLTNMVQMQLELAGVLPTAGQVG
>NZ_CP020046.1|WP_154048423.1|991982_992864_-|hypothetical-protein
MFKIYNLFKIAVGVVALVTLAGCGGGGGASGTPLVGTGANGGSAGSGTISGSTALTINLIVAGGGNSSSIASGQSTVLIATVNNKLTGAVVANQVVTFAFSANISNANLTVDSANTSAGGQAATLYTAGNQSSGTDIVTATVTDAAGNVATASVNLDVQATTSNFTMTVSPNTPQNVSSNSVSGAMQTVNEAIPFTITVKDSNGNVVPNLTVTSALGSSNSAAYLGNPPVAVVPGFLTQSATVSPTLINTTDQSGQAEPTYISGGRAGTDIVIFTLTRNGIIIASQSVSVQVN

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Crispr_ID: NZ_CP020046_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_3

1051844-1051929

Orphan

Consensus_repeat	Method
AGTAGGCAGCGCTGCGCGCGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_3

>merge|NZ_CP020046|3|1051844-1051929|CRISPRCasFinder
AGTAGGCAGCGCTGCGCGCGATCTGCATACGCCCTCCCAACCTCCCCCACCCTGTGGGGAAGAAGTAGGCAGCGCTGCGCGCGATC

>NZ_CP020046|3|3|1051844-1051929|CRISPRCasFinder
AGTAGGCAGCGCTGCGCGCGATC	TGCATACGCCCTCCCAACCTCCCCCACCCTGTGGGGAAGA
AGTAGGCAGCGCTGCGCGCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416609.1\|1051295_1051775_+\|DUF2325-domain-containing-protein	unknown	unknown	gnl\|CDD\|378383
NZ_CP020046.1\|WP_079416612.1\|1053957_1054635_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP020046.1\|WP_079416607.1\|1050767_1051211_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP020046.1\|WP_079416618.1\|1056587_1058243_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP020046.1\|WP_079416603.1\|1048371_1049208_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP020046.1\|WP_079416622.1\|1059696_1061151_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|236671
NZ_CP020046.1\|WP_079416611.1\|1052112_1053921_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP020046.1\|WP_079416601.1\|1047297_1048365_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP020046.1\|WP_154048522.1\|1059190_1059682_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP020046.1\|WP_079416597.1\|1042843_1045075_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP020046.1\|WP_079416599.1\|1045094_1046195_+\|hemin-degrading-factor	unknown	unknown	gnl\|CDD\|226243
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183043
NZ_CP020046.1\|WP_079420344.1\|1058278_1059151_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP020046.1\|WP_169836752.1\|1049204_1050035_+\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP020046.1\|WP_079416605.1\|1050048_1050768_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP020046.1\|WP_079416595.1\|1040873_1042325_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP020046.1\|WP_079420342.1\|1046359_1047277_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
NZ_CP020046.1\|WP_079416614.1\|1054719_1055967_-\|DNA-directed-DNA-polymerase	unknown	unknown	gnl\|CDD\|176453
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	unknown	unknown	gnl\|CDD\|236890
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079416609.1\|1051295_1051775_+\|DUF2325-domain-containing-protein	gnl\|CDD\|378383	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.	3.94058e-13
NZ_CP020046.1\|WP_079416612.1\|1053957_1054635_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.58455e-69
NZ_CP020046.1\|WP_079416607.1\|1050767_1051211_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.90298e-31
NZ_CP020046.1\|WP_079416618.1\|1056587_1058243_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	3.38297e-152
NZ_CP020046.1\|WP_079416603.1\|1048371_1049208_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	5.6684e-62
NZ_CP020046.1\|WP_079416622.1\|1059696_1061151_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	8.03906e-66
NZ_CP020046.1\|WP_079416611.1\|1052112_1053921_+\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP020046.1\|WP_079416601.1\|1047297_1048365_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.50284e-75
NZ_CP020046.1\|WP_154048522.1\|1059190_1059682_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	1.14688e-48
NZ_CP020046.1\|WP_079416597.1\|1042843_1045075_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	7.81767e-112
NZ_CP020046.1\|WP_079416599.1\|1045094_1046195_+\|hemin-degrading-factor	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	9.88565e-149
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0
NZ_CP020046.1\|WP_079420344.1\|1058278_1059151_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.63905e-14
NZ_CP020046.1\|WP_169836752.1\|1049204_1050035_+\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	9.6531e-10
NZ_CP020046.1\|WP_079416605.1\|1050048_1050768_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	1.79707e-48
NZ_CP020046.1\|WP_079416595.1\|1040873_1042325_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	3.65749e-93
NZ_CP020046.1\|WP_079420342.1\|1046359_1047277_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	2.52328e-83
NZ_CP020046.1\|WP_079416614.1\|1054719_1055967_-\|DNA-directed-DNA-polymerase	gnl\|CDD\|176453	cd00424, PolY, Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.40716e-81
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	7.64002e-166

>NZ_CP020046.1|WP_079416609.1|1051295_1051775_+|DUF2325-domain-containing-protein
MPPPPRTDLAWLTEYHALCRAYADAQHHCTELIRGQQRRIAALESQLMLLQGELIRRDTALAWAQADQAVLAAGKTPATPEADPAALASSLRAADLVICQTGCVSHGAYWRVEDYCRRTGKPCVLVDQPEALRIVRLHRPPRAESMAASFTPERDDPAA
>NZ_CP020046.1|WP_079416607.1|1050767_1051211_+|biopolymer-transporter-ExbD
MNALDAAALDTPIDAPLMGEINMTPLVDVMLVLLIVFMVTLPALVDAAQVRLPQASSTPLPRNLPHVDVQLAADGTPRWNGAAVTAEALQARLRQTAQQNPPPQIRLYADRATPYAFVADLLAAAQRAGVPGVAFVTAAPTGAGGAP
>NZ_CP020046.1|WP_079416605.1|1050048_1050768_+|MotA/TolQ/ExbB-proton-channel-family-protein
MQTFGLGVLWQQGDAVSRATLLILLGMSCLSWTLILIKSLDLLRFSRQAARVDTHFWESHDLESGAPILGQPGSPFHALYLAATQAMAHHTAHPQHLHTRLDLGDWLARGLKMALEETAARMQSGLAVLASIGSTAPFVGLFGTVWGIYHALMAIGASGQAGLNQVAGPIGEALVMTALGLFVAIPAVLGYNALTRAARSQVAKLTRFANGLHALLLTGANPAALKPGPRLQAVAARSA
>NZ_CP020046.1|WP_169836752.1|1049204_1050035_+|TonB-family-protein
MNGPISWPHAFRVQLSRPSWPVVLLVMAGLHLWLLVWARSLAPTPVTAAAALQSPQVRWMQAAVLPAPEPDPQAAPRVDGTRTTQPRLKTPPQPQRPPHPATAPPEPAAERAPQRTPDPAPLPVPLPRNDAPAPTLQAAPASPQTAAPTTAKVSPAPPNTPAARTDGDVPHPAHRAAASDPTPSAAPARPVDARQFGCDFPRPPYPRLARLNGESGTAVMHLTLAPSGQINAAVVERSSGSATLDAAALASARAGQCAAGVGLRQATVPFHFQLDP
>NZ_CP020046.1|WP_079416603.1|1048371_1049208_+|ATP-binding-cassette-domain-containing-protein
MSALPQTQAAALLHVEGATARLGRHVVGPFDLHLQAGQTLAILGPSGAGKSTLLRLLARELPPDSGTVRFEGKPLRQWNALDLSHRRAVLPQGFDVAFGLAADLVVALGRVGRRHDPQRDAIVQAALELARVPQVRHRRFHTLSGGEQARVQLARVFAQLWDVQGGLVLVDEPIAALDPGLQFELMHGLIGFARARRHALVAVLHDINHALAGFDRLLLVRAARQMAILPADRAALPQLQTLYGVRLQAVELGEGQWATVVRPEAGADMVSMSDRAAP
>NZ_CP020046.1|WP_079416601.1|1047297_1048365_+|iron-ABC-transporter-permease
MNPCTELAPPRARPAPLRWLQGLQRRPALALGVALAVCLVLAVQAGAVEVRRADWLQPFAATSGSYVLWEIRLPRALFAALVGAVLGLSGALTQGLFRNPLADPGLLGVTTGAALFAALVIVFFAGLGLALPPPLRLWLLPAAAFTGALLVVFLLDRAARWLTPGSIAGLLLTGVALNALAGSVIGLATYAASDEQLRSLSFWTLGSLAGANWTLVLLLAGLLALGLWWVRRLLQAMNALALGEAVAAHLGIDVNALRGRVIVAVALLSGFAVAWTGVIGFIGLMAPNLVRLLIGPDQRQVAPLSALTGAIVLTLADTLARTVAIPAEIPVGIFTALLGGPFFLLMLRPGLSRGG
>NZ_CP020046.1|WP_079420342.1|1046359_1047277_+|ABC-transporter-substrate-binding-protein
MSGHGGFVHTFSARLSGLSRRDVLTGGAASLFGVLCGGSLAQASPGPRVVSIGGGITEIVYALGAQSLLVGVDTTSTFPAAAARLPSVGYARQLSAEGILALTPSLVLATAEAGPPAVLQQLRGSGIALQTLDADHRFEGLIARIQAVGKATGHADAAQALAAKTTRDWSQVQRDIAAASQRPRVLFLMGFDIARMMVAGQGTAAQAMLDYAGARNAAQGYGGYKPLTPEALIAARPDVLLTTRQALDAGGGAAGLLRQPGMAQTPAGQARRVVALDTMLLLGFGPRLPLAVQTLHRDLVASLSA
>NZ_CP020046.1|WP_079416599.1|1045094_1046195_+|hemin-degrading-factor
MSHALSQQSIDPTQALRDAYAQARRGTPPLRQRDVAAQLGCSEGEIVAAHVGAPEDGALSALRLQPRWRDLFPAFESLGDVMALTRNASCVHEKTGTYRNVSCTDRGGLVLDRQIDLRLFFSRWTHGFAVTENGNGGTRQSLQFYDAQGQALHKIHARPATDLKAWQELIAQFRAPQQQAGMQPEPAPPLEAERDDGDIDVAQLREEWAGLRDTHEFFGLLKRHGLTRTQALRLADPRFAIEVERDVLPRMLQDAARDAVPIMVFVGNPGIIQIHSGTVQKIVPMGPWINVLDPGFNLHLRQDHVARAWVVRKPTSDGLVTSLELFDAAGETIAMLFGERKPGTQELAAWQNLMNHVAQEEALCAA
>NZ_CP020046.1|WP_079416597.1|1042843_1045075_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MWRHKILWVSMCMAWGGSATPALADDSNKPQPGPAPTASAAGSVTSSALPGVTITSTRTARSVDDVPDTVTVHTARQIELSGARNIEELFRDELDVTVNHDPARFTAASSSTGRAGNAGINIRGLEGNQVLMMTDGIRLPFAFDFGPFSTGRGDYVDVNAYKSVEVLRGPASTQYGSDGLAGAVQFFTLDPQDLLKPGSNANGFARLSYSSVDRSWNTAVAGAGQKGPWQGLLLGSFSRGHDQDNRGGNDAANVTRTTPNPMDWRSQYVLGKAILAITPRQSLGLTVEALRRKQDTDVLSALAVPPYAATSTRGLTANDAIARNRLSLRHDWSGDGWLRAARTEVYWQDAEVRQRTWEDRNTAADRTRDNTYRQRILGLSTQLQSRIATDTWLHRLSWGADLSTSRISAVRDGTVPAAGETFPTKPFPDTDYRLMGLFVQDEIDSERLTFIPGLRLDGYQLDPSTSGYGGKAVSLSDHAVSPRLGAIWRLAPQAQPYVQWALGFRAPTPDQVNNNFANPLQGYTSVGNPDLQAEHANSIELGLRGSQGNVSYSLAAYHNRYRNFIEQTVVGGTGTPTNPLVFQYVNLSKATIRGLEARARWQATSQWSFNAGAAYSRGDYEQNGVSAPLNSVQPLRLLVGAQYDAGWLGGKLDVQHTQGKALGRIDTADYTGSPFTPKAYTVVNVGLWWKPTPRITVSGNLNNLFDEKYWVWDDVRGLSASSPVLDAYTEPGRNVQIALRYDF
>NZ_CP020046.1|WP_079416595.1|1040873_1042325_+|efflux-transporter-outer-membrane-subunit
MNPTTSPRLWLVAPLVLLLGACAATPPEPAVKIALPASYAQAQSGWTPAQPLAAAPRGAWWSVFNDPVLAGLEAQVAQHNQSLAAQLAAYEQAQAAVSQAQAAYYPTLTAGAAATRAKAAGTGAVGNSLSASLGASWEPDLWGKVRLQVQAGQATAEASAATLQNTQLSLQSTLATSYLQLRTVDAQIALAQDTVAAYQRALQLTDNRYKAGVDTAADVAQARTQLLQAQTSLTDLGVTRVQLQNAIAVLVGQPPADFTLPAGDALPEVPAIPAGIPAQLLQRRPDLAAAQAQVAAANAQIGVAQTAWFPDLTLSAQGGSQAARIAQLFSAPSLFWSIGPQLAATLFDGGLRRAQVQSSQAAYRETVANYRQSVLTALQQVEDNLAAQRILSQEAQQQADVVQAAEVSLRLAENQYKAGTAPYLNVLTAQTTATSARNAQLTLLNRRYAASVGLIQALGGGWGTADTPAIGPLPTASAASQSR
>NZ_CP020046.1|WP_079416611.1|1052112_1053921_+|cation:proton-antiporter
MSATALLTLLAASVLLVPLFKRFGLGSVLGYLVAGIAVGPYGLGVVSRPESVLHTAELGVTLLMFLIGLELQPSRLWALRRQVFGLGALQMAGVALPAAALAAALGMGWTGAALVGVALAMSSTAYILPLLAERRELTTRFGRETFAILLFQDVSVIPILALLALTGAGGHAPGWPALAALLAVALAGRPVLATMFRYVARFGGGNRELFAAAALLGAVGIGVGLSSVGLSASLGAFLAGVLLADSEFRHELEAAIEPFESLLLGLFFIAVGMGIALPLVVAQPLQVLGLGAGILLLKALTLYAGRRLIGGDDAVSRPLAIVLACGGEFAFVLFASARANGLLSGPTAELLTVAVAVSMALAPFLLILNDRLIQPWARNRQAPPFSTIDEPGQPVVIAGYGRVGQVVGRLLNAQGVAFTALDASAEQVDFVRQFGNKIYYGDATRLSLLRAAHVQDARLFVLAVDDVEASLKIAELLRTHFPDVPLLARARNRTHLMRLRELGVKEVLRETWGTSVELGRRALQTVQPDVDADRVAALFTAHDLRLLDRQQAVSHDQAALIALSKDARAELEDILQGDAQLHLATAPDVGTAASKAVPDAAP
>NZ_CP020046.1|WP_079416612.1|1053957_1054635_-|histidine-phosphatase-family-protein
MPTRILLVRHGETRLTLEDRFAGSNDEPLSDEGREQAASLGMRLSGVPIAAAYASPMARTMETAQLVAAPHGLPVQTAAALREIDYGNWEGLTRDEVIDRFPQAYGLWEEDPLLVAPEGGESGLSVIHRALPFLREIIERHRHQTVLVVSHKGTNRLLVSSLLGLDARGYRERLDQSPAALNILDFMNEVRPRLKLFNDISHYQSFPDREISERISKWWRPTTER
>NZ_CP020046.1|WP_079416614.1|1054719_1055967_-|DNA-directed-DNA-polymerase
MTLRCLLVDFNSYFASVEQQLCPELRGRPVGVVPMMADTTCCIAASYEAKAFGVKTGTQVAEARRLCPNIVFVVARHAEYVQIHHRAVAVVDTIAPVENVLSIDEMACSLPMGWSSRERATQLALRLKAALREALGECMRVSVGIAPNVFLAKQASNLQKPDGLVVIDAGDLPGPLLRMQLTDLTGINVRMFARLQAQGIHSVEQLWQARREQLRVVWGGMAGEAFFDRLHGLASGVQAANPRRSLGHSHVLAPEMRSADGALAVLDRLTQKAAMRLRREHLLAGAMTVMLKLTRRHGERLRPEHGARFAATADTRALLHTLRGLWPGMVPAGWAPMKVAMLLHDLRQPGQTSASLFADDVPGTGAEQAALWSAVDALNVRYGRHTVYCGSGHQGRAEAPMRIAFNHIPDLETEG
>NZ_CP020046.1|WP_079416618.1|1056587_1058243_+|Na/Pi-cotransporter-family-protein
MAISILLDLIGGVSLLLWGLHMVQSGILRAFGPRLKAWLGRLLKTRLHALAAGVGVTALLQSSTATGLMLSSFAAAGMIDLVPAMAVMLGANIGTTLIVQLLSFDTSAVAPALLFTGLVAFKRGGRTVTRDLGRVAIGLGLMLLSLHLLLTDLAPAEHAPLVGQMLQALTDQPLLTLLLGAVLTWAAHSSVATVLLTMSLAYSGFVTPTAALALVLGANLGSALNPLLEVGDGGNLAKRRVPVANLVNRVVGCVLVLPFVHLIGKTLLALEPNPVRMVADFHTGFNVALALLFILPLPWMARLLERLLPESKPQDDVGTPLYLDDSLVEMPSVALANAARETLHMGDIVETMLRQGTQALLAGDRKLADAVAQLDDAVDKLHEAIKLHLVRITQESLDDVESRRAMEIMTLSVNLEHIGDIIDKNLMELAQKKIRRQLQFSAMGQEEIAAFVRLIQESLQLAFSVFLSGDVKVARQLVAQKTRVRELEAAASENHLERLRDGVRETLETSSLHLDVLRDLKRIHSHIAATAYPALEAAGQLRNTRLKSRDD
>NZ_CP020046.1|WP_079420344.1|1058278_1059151_-|DMT-family-transporter
MPFIELFLLAAIWGASFLFLRIAVPEFGPVPLIALRVGIASLVLLPVLRTAAARAQFRRKLWPLLVVGVTNSALPFTLFAVGALHLGAGFEAILNATTPLWAAVLGATLFGAPISRAQIVGLGVGLVGVVVLVSDQPGLSQGAAHWAVAAVLLAPMSYGYAVHFARRHLAGVDPALTAFGSQLTAVALLALPATFAWPAHAVRGDIWAAVAALGVLCTGLAYVLYFRLVAQVGAAYAASVTFLIPAFGMLWGALFLHEPVTGAMLAGCAIILAGTALASGQWKRLAGLRA
>NZ_CP020046.1|WP_154048522.1|1059190_1059682_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MDSPLGALQLTADGDALVGVHFLDAASPAAAIATATPVLRRAQAQLQAYFRGEAVVFGLPLRPEGTPFQQEVWRTLQTVPAGQTISYATLAQRLGLPGTHARAVGAAVGRNPLLIIVPCHRVVGHDGALTGYAAGLPRKRALLDLEHAAPFTKSPATTRPRAA
>NZ_CP020046.1|WP_079416622.1|1059696_1061151_-|DNA-3-methyladenine-glycosylase-2-family-protein
MRLDPDTCYSALLTRDRRFDGWFYVGVSSTGVYCRPVCAVRTPLRCNCNFYPSAAAAEQSGYRPCLRCRPELAPGHGVLDLSGQLARAAAALIDQGLTDHDGLGTVASRVGVTPRHLRRIFEAEFGVSPVAYAQTQRLLLAKGLLTDTALPMAAVAGAAGFGSVRRFNHLFRSRYGLTPLRLRRTGGGSGQEDLLTVSLGYRPPYAWGQMIDFLARRAVDGVERVTADRYSRAIAFRGEPGAATVTGWISVTHEPERHGLRLTLPPHLSPHIGRILAGVRRLFDLGARPDLIDAHLPEFAAEVPGLRVPGAFDGFEIALRAVVGQQIGLPQACGILARLAQRHGTPVLDAPEGLCRTLPDAPTLAACTPEALRACGLTGARALSLHALAEAVASGRVALQPLAPVESTLAALQALPGIGDWTAQVIALRGLGWPNAFPAGDLVLRKQLGLTRPADVLAHAARWAPWRGYAAVHLWRRATEGERS
>NZ_CP020046.1|WP_079416624.1|1061385_1062879_+|FAD-binding-protein
MNAPLQPDLAARAARQAEVVAALGAVVPPHILLWQPEEVTPYECDGLSAYRRKPLVVVLPETEAQVAAVLKACHRLNVPVVARGAGTGLSGGALPNEDGVLLALARFNRIKRVDPVARTATVECGVRNLAISEAAAPHGLFYAPDPSSQIACTIGGNIAENSGGVHCLKYGLTVHNVLQVRGYTVEGEPLTVGGLACDCPGPDLLAAVIGSEGMLMVVTEVTVKLLPKPVLARCIMASFDDLRKAGDAVAAIIAAGIIPAGLEMMDQPMTVAAESFVHAGYDLDARAILLCESDGTPEEVEEEIGRMTEVLSLCGATALKCSESEAERLRFWSGRKNAFPATGRISPDYYCMDGTIPRKRVADMLEAIQGMEGKYGLRCVNVFHAGDGNLHPLILFDANQPGELHRAEAFGAEILETSVAMGGTVTGEHGVGYEKINAMCVQFSPEEREQFFAFRRAFDPGETLNPGKQIPTHARCAEYGKMHVRGGLLPFPDLPRF
>NZ_CP020046.1|WP_079416626.1|1062939_1064070_+|glycolate-oxidase-subunit-GlcE
MQADVLIPLWQDLVREAASRGERIRIHGGGSKAPWWAAAQHSGADTAEHTLDATLLSGINHFEPTELVITARAGTPLTEIEAALAEHHQFLPFEPPHFARASGGQATLGGMVASAMSGPARISAGGVRDYVLGASLLSGRGEVLRFGGEVMKNVAGFDVSRLLCGSLGSLGVILDVSLKILPVAPAETSLRFAMTQDEAIARCNAWAAQPLPLNASAWLPDRSGSSGKGVLTVRLRGARAAVQAAGAKLGGERMADTDAATFWTALREQTLPWFTPTWPGDSQAALWRLSLPTTAPALDLSGTQLVEWFGGLRWLISAAPASIILEAARQAGGHATRFRGGDARAPVFEPTQATLLRIQRQIKTAFDPHGVFPTLF
>NZ_CP020046.1|WP_079416628.1|1064075_1065308_+|glycolate-oxidase-subunit-GlcF
METHLSPEFADTPEGQQAEAILRNCVHCGFCTATCPTYQLLGDELDGPRGRIYQIKQVLEGEAPTRNTQLHLDRCLTCRNCETTCPSGVEYGRLVDIGRTVVDAKVERPAGEKLARWVLREGMTSSLFAPALKLGQALRPLVPAALRDKVPPRQRSGKRPQRTHARKVLMLGGCVQPALMPNIGAATARVLDAVGVQPLLADGAGCCGAIRQHLADHGGALADMKRNVDAWWPLVESGTVEAIVMDASGCGAMVSEYGHHLQHDPAYADRAQRIGALCLDISEYLPQFAAPLKTLLKNKPVDHLAYHPPCTLQHAQQVRGKAETLLRDLGFEVKLPLESHLCCGSAGTYSVLQPELSKELRNRKLQHLAETAPQRIVSSNIGCIQHLQTGTTIPVQHWVELLDEALHGKP

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Crispr_ID: NZ_CP020046_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_4

1070580-1070665

Orphan

Consensus_repeat	Method
GAGGAGTAAACAGCGCTGCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_4

>merge|NZ_CP020046|4|1070580-1070665|CRISPRCasFinder
GAGGAGTAAACAGCGCTGCGCGCAATCTGCATACGCCCTCCCAACCTCCCCCGCGATGTGGATGAGGCGTAAACAGCGCTGCGCGC

>NZ_CP020046|4|4|1070580-1070665|CRISPRCasFinder
GAGGAGTAAACAGCGCTGCGCGC	AATCTGCATACGCCCTCCCAACCTCCCCCGCGATGTGGAT
GAGGCGTAAACAGCGCTGCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|235482
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183043
NZ_CP020046.1\|WP_079416637.1\|1071666_1072482_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP020046.1\|WP_079416632.1\|1065867_1066764_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP020046.1\|WP_079416622.1\|1059696_1061151_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|236671
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372651
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224944
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	unknown	unknown	gnl\|CDD\|236890
NZ_CP020046.1\|WP_154048522.1\|1059190_1059682_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP020046.1\|WP_079416634.1\|1067115_1070475_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP020046.1\|WP_079416639.1\|1072556_1073888_-\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP020046.1\|WP_079420344.1\|1058278_1059151_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP020046.1\|WP_079416630.1\|1065333_1065843_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP020046.1\|WP_079416618.1\|1056587_1058243_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP020046.1\|WP_079416649.1\|1081469_1081850_-\|YXWGXW-repeat-containing-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416635.1\|1070807_1071611_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	3.04269e-123
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0
NZ_CP020046.1\|WP_079416637.1\|1071666_1072482_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.73154e-47
NZ_CP020046.1\|WP_079416632.1\|1065867_1066764_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.57081e-07
NZ_CP020046.1\|WP_079416622.1\|1059696_1061151_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	8.03906e-66
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	gnl\|CDD\|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	0.0015844
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	gnl\|CDD\|224944	COG2033, COG2033, Desulfoferrodoxin [Energy production and conversion].	1.54577e-08
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
NZ_CP020046.1\|WP_154048522.1\|1059190_1059682_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	1.14688e-48
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP020046.1\|WP_079416634.1\|1067115_1070475_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.75389e-59
NZ_CP020046.1\|WP_079416639.1\|1072556_1073888_-\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP020046.1\|WP_079420344.1\|1058278_1059151_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.63905e-14
NZ_CP020046.1\|WP_079416630.1\|1065333_1065843_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	3.55933e-96
NZ_CP020046.1\|WP_079416618.1\|1056587_1058243_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	3.38297e-152
NZ_CP020046.1\|WP_079416635.1\|1070807_1071611_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.24132e-36
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	7.64002e-166

>NZ_CP020046.1|WP_079416634.1|1067115_1070475_+|EAL-domain-containing-protein
MQEREIALRLLDLPSEMLRGLAEGRPVAELAAMLCRMAEASAPGRIASVLRIGSDGALHPLTAPSSPPDMLAALDGLNPGPHAGSCGNAVFHNAPTFIEDIPSDDRWDDLRAVAEQWQLRSCWSWPVRDGAQVIGSFALTGLEPGAPNADERRLLEFVASMVGALLHMDQLQRERESAERLRQAMLDNALVAIALVGGRIIRSGNARMARMFGYPDTASLQGLPARALYADDAVFASVGAELYAAMTRGESVTREVPMRRSDGSLFWCELTGQAVTGQPGVDSVWVAQDVSERHAADERMRWQARHDALTRLPNRYALDEWLPNRLAEARLRGAVVAIGLLDLDDFKAINDLWGHAAGDAVLKQVAQQLGASLDARDLLARIGGDEFVLVIEGPEGDADIERRLASLGELLPLAVPLPEDKVSHLGLSLGLAVFPHDGDDPDTLLRRADAALHSIKLHKRTRQHWWLRWGHEVESDLIEDGIDHWLPQPYGPQAEALLRIAAPHYHGVAAAFIDQFYALVGRDAESSLLLSHLTPEEFTHLKARQVDHFRRLLGPELLEAEHVREATRIGEIHALVGVPTRLLVQSAGLYLQALIDMSHAMPARSRDRRRIVQLLTARMQSELQTEVEAAQALRERYQQCVIALEHALQDGAPWSEFMQMALDRLITLPGLKAAGMGAPDANGEFVVELSSGLEPFARAMQKHYGALKVPKLQGSHAESIGPTAAAWQTEQVCTLASYALDEAGTPWREAALEASIRSAASIPLTDRNGRVVVVLSLYGSYPAMFERSAARSFLDNLGQTLSRAWQRLHAHSRQQPVPVALRQRWRTSLFDHGLEMHLQPVVDLQTGKPYAVEALARLRMDDGSLAMPGQFLPWFGHAELSRLFRGGLEQTLAHIARWDTEGVRLNLSLNLPLDVLLQPDCRDRVAAALHSAGVAPERLSLEMLENAEFDDPKRRDDAVRELAATGVRLVMDDLGSGYSSLLRLRTLPFHTVKIDQSLVREAGRDPEQAIGFIGALVQLAQSLGLWVVVEGLETPDLVEAATLLGADAGQGYALARPMPAADVPNWVRHFHCPIDPRHPSTQLGRLALDWMAQHGRQLADESARRLLHAARRKALGTRA
>NZ_CP020046.1|WP_079416632.1|1065867_1066764_-|DMT-family-transporter
MHPSRFTLAAISGLMLNAFVWGVSWWPFRHLNGLGLNPLWATALMYAVSTVIIVVARPSALRALWRHPPLWGILIASGATNAAFNWGVTEGDVVRVVLLFYLMPVWATLLARWLLDERLTRLVGLRLALALAGAMVVLWPRGGGLPLPQHPADWLGVIGGMFFALNNVLLRKYAHTPPEARGLAMFAGGVIVAGGVAAVLTAQGSVSPVPALAPAWVVPVVLMALAFLAANLGLQYGAERLPSTMTAVVMTVEIVFASGSAMLLGAEHLSAQALFGGSLILLAILLAAWPRAAAPQTA
>NZ_CP020046.1|WP_079416630.1|1065333_1065843_-|glutathione-peroxidase
MTAAAPVHTAFDFSALDIEGREQALAQWRGRVLLIVNTASACGFTPQYAGLQALQERYGLKGFTVLAFPCNQFGAQEPGSAEEIAQFCTSRYATTFPLFAKVEVNGEHAHALWRWLTREASGLLGSHAIKWNFTKFLVGRDGQVLKRYAPQERPESIGPDIEMALQAPG
>NZ_CP020046.1|WP_079416628.1|1064075_1065308_+|glycolate-oxidase-subunit-GlcF
METHLSPEFADTPEGQQAEAILRNCVHCGFCTATCPTYQLLGDELDGPRGRIYQIKQVLEGEAPTRNTQLHLDRCLTCRNCETTCPSGVEYGRLVDIGRTVVDAKVERPAGEKLARWVLREGMTSSLFAPALKLGQALRPLVPAALRDKVPPRQRSGKRPQRTHARKVLMLGGCVQPALMPNIGAATARVLDAVGVQPLLADGAGCCGAIRQHLADHGGALADMKRNVDAWWPLVESGTVEAIVMDASGCGAMVSEYGHHLQHDPAYADRAQRIGALCLDISEYLPQFAAPLKTLLKNKPVDHLAYHPPCTLQHAQQVRGKAETLLRDLGFEVKLPLESHLCCGSAGTYSVLQPELSKELRNRKLQHLAETAPQRIVSSNIGCIQHLQTGTTIPVQHWVELLDEALHGKP
>NZ_CP020046.1|WP_079416626.1|1062939_1064070_+|glycolate-oxidase-subunit-GlcE
MQADVLIPLWQDLVREAASRGERIRIHGGGSKAPWWAAAQHSGADTAEHTLDATLLSGINHFEPTELVITARAGTPLTEIEAALAEHHQFLPFEPPHFARASGGQATLGGMVASAMSGPARISAGGVRDYVLGASLLSGRGEVLRFGGEVMKNVAGFDVSRLLCGSLGSLGVILDVSLKILPVAPAETSLRFAMTQDEAIARCNAWAAQPLPLNASAWLPDRSGSSGKGVLTVRLRGARAAVQAAGAKLGGERMADTDAATFWTALREQTLPWFTPTWPGDSQAALWRLSLPTTAPALDLSGTQLVEWFGGLRWLISAAPASIILEAARQAGGHATRFRGGDARAPVFEPTQATLLRIQRQIKTAFDPHGVFPTLF
>NZ_CP020046.1|WP_079416624.1|1061385_1062879_+|FAD-binding-protein
MNAPLQPDLAARAARQAEVVAALGAVVPPHILLWQPEEVTPYECDGLSAYRRKPLVVVLPETEAQVAAVLKACHRLNVPVVARGAGTGLSGGALPNEDGVLLALARFNRIKRVDPVARTATVECGVRNLAISEAAAPHGLFYAPDPSSQIACTIGGNIAENSGGVHCLKYGLTVHNVLQVRGYTVEGEPLTVGGLACDCPGPDLLAAVIGSEGMLMVVTEVTVKLLPKPVLARCIMASFDDLRKAGDAVAAIIAAGIIPAGLEMMDQPMTVAAESFVHAGYDLDARAILLCESDGTPEEVEEEIGRMTEVLSLCGATALKCSESEAERLRFWSGRKNAFPATGRISPDYYCMDGTIPRKRVADMLEAIQGMEGKYGLRCVNVFHAGDGNLHPLILFDANQPGELHRAEAFGAEILETSVAMGGTVTGEHGVGYEKINAMCVQFSPEEREQFFAFRRAFDPGETLNPGKQIPTHARCAEYGKMHVRGGLLPFPDLPRF
>NZ_CP020046.1|WP_079416622.1|1059696_1061151_-|DNA-3-methyladenine-glycosylase-2-family-protein
MRLDPDTCYSALLTRDRRFDGWFYVGVSSTGVYCRPVCAVRTPLRCNCNFYPSAAAAEQSGYRPCLRCRPELAPGHGVLDLSGQLARAAAALIDQGLTDHDGLGTVASRVGVTPRHLRRIFEAEFGVSPVAYAQTQRLLLAKGLLTDTALPMAAVAGAAGFGSVRRFNHLFRSRYGLTPLRLRRTGGGSGQEDLLTVSLGYRPPYAWGQMIDFLARRAVDGVERVTADRYSRAIAFRGEPGAATVTGWISVTHEPERHGLRLTLPPHLSPHIGRILAGVRRLFDLGARPDLIDAHLPEFAAEVPGLRVPGAFDGFEIALRAVVGQQIGLPQACGILARLAQRHGTPVLDAPEGLCRTLPDAPTLAACTPEALRACGLTGARALSLHALAEAVASGRVALQPLAPVESTLAALQALPGIGDWTAQVIALRGLGWPNAFPAGDLVLRKQLGLTRPADVLAHAARWAPWRGYAAVHLWRRATEGERS
>NZ_CP020046.1|WP_154048522.1|1059190_1059682_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MDSPLGALQLTADGDALVGVHFLDAASPAAAIATATPVLRRAQAQLQAYFRGEAVVFGLPLRPEGTPFQQEVWRTLQTVPAGQTISYATLAQRLGLPGTHARAVGAAVGRNPLLIIVPCHRVVGHDGALTGYAAGLPRKRALLDLEHAAPFTKSPATTRPRAA
>NZ_CP020046.1|WP_079420344.1|1058278_1059151_-|DMT-family-transporter
MPFIELFLLAAIWGASFLFLRIAVPEFGPVPLIALRVGIASLVLLPVLRTAAARAQFRRKLWPLLVVGVTNSALPFTLFAVGALHLGAGFEAILNATTPLWAAVLGATLFGAPISRAQIVGLGVGLVGVVVLVSDQPGLSQGAAHWAVAAVLLAPMSYGYAVHFARRHLAGVDPALTAFGSQLTAVALLALPATFAWPAHAVRGDIWAAVAALGVLCTGLAYVLYFRLVAQVGAAYAASVTFLIPAFGMLWGALFLHEPVTGAMLAGCAIILAGTALASGQWKRLAGLRA
>NZ_CP020046.1|WP_079416618.1|1056587_1058243_+|Na/Pi-cotransporter-family-protein
MAISILLDLIGGVSLLLWGLHMVQSGILRAFGPRLKAWLGRLLKTRLHALAAGVGVTALLQSSTATGLMLSSFAAAGMIDLVPAMAVMLGANIGTTLIVQLLSFDTSAVAPALLFTGLVAFKRGGRTVTRDLGRVAIGLGLMLLSLHLLLTDLAPAEHAPLVGQMLQALTDQPLLTLLLGAVLTWAAHSSVATVLLTMSLAYSGFVTPTAALALVLGANLGSALNPLLEVGDGGNLAKRRVPVANLVNRVVGCVLVLPFVHLIGKTLLALEPNPVRMVADFHTGFNVALALLFILPLPWMARLLERLLPESKPQDDVGTPLYLDDSLVEMPSVALANAARETLHMGDIVETMLRQGTQALLAGDRKLADAVAQLDDAVDKLHEAIKLHLVRITQESLDDVESRRAMEIMTLSVNLEHIGDIIDKNLMELAQKKIRRQLQFSAMGQEEIAAFVRLIQESLQLAFSVFLSGDVKVARQLVAQKTRVRELEAAASENHLERLRDGVRETLETSSLHLDVLRDLKRIHSHIAATAYPALEAAGQLRNTRLKSRDD
>NZ_CP020046.1|WP_079416635.1|1070807_1071611_-|TlpA-family-protein-disulfide-reductase
MDALRLGPLVLPWSPLLLVLGYAAAVWVAGLAQKTGRGNAEPLLLPLLVLALVAARAGFVARHGADYASVLAMIDIRDRGFDAWTGWSVAVVAVAFVAWRRPALRRSLPLSAGAGAALVLAGLATLSLIQPPRPPLPDLTLQTLQGRPVALASLRGQPAVVNLWATWCPPCRRELPLLIQAAQQQTGARIVLVNEGETASRVAGYLARERLGQPEILLDPDSRLLSAYQSPGLPTTLFIGADGQVKALHIGELSAATLQQGIAALQR
>NZ_CP020046.1|WP_079416637.1|1071666_1072482_-|mechanosensitive-ion-channel-family-protein
MNDVQHYSNLLLQYATEAGMKILAAIALWILGRWLIRMADKLLRGMLERQRFDPMLTRYIISFVSIALNIVLVVAILGYFGVQTTTFAALVAGAGVAIGAAWSGLLGNFAAGAFLLVLKPFKVGDFVKAGEVTGTVKEVGLFVTSLVTLDNVLTFVGNGKILGNTIENFSTNDYRRVDLKCQLSSDADHAAAMDLLRKQVQAIPNVLANPAPVIEILEFNSVGPVLTVFPFCNNAHYWQVYFDTNRTIREALSQAGFAYALPKQVWVGKAQ
>NZ_CP020046.1|WP_079416639.1|1072556_1073888_-|lysophospholipid-transporter-LplT
MKKGFYWIMAAQFFSSLADNALLIAAIALLVQMQSPDWMTPLLKFFFTISYVVLAPFVGAFADAILKWKVMFITNLVKVAGLVLMLFSVHPLLAYGVVGLGAAAYSPAKYGILTELLPPQQLVAANGWIEGTTVSSIILGTVLGGFLVSQSASTFLLGLPGVASLGIDTTPESAILVITLVYLVAALCNLRIPDTGARYEKQKARPVALLMDFAHCTKVLWTDKLGQISLAVTTLFWGAGATLQFIVLKWAEYALGLDLTMSSVMQAAVALGVAVGAISAAVRVPLKRSLSVLPLGVGMGLTTVALAFFHRDLLPDVTLHLWTLQLPLYMLVAYSVMVFIGALAGYFVVPMNALLQHRGYVLLSAGHSIAVQNFNENLSVLLMLLFYALLIRLDLPVPWVIALFGAFVSLTMFLVILWYRRNQRERDWTQLIGEPRHRDEPHS
>NZ_CP020046.1|WP_079420346.1|1074130_1075234_+|alanine-racemase
MPRPISAVIHTASLSHNLARVRRAAPGSKVWAVVKANAYGHGIARAYGALRAADGFALLDLAEAEQLRALGWVGPILLLEGCFAAEDLALCERLNLWHVVHCREQIDWLAMHRGSRAHRVFLKLNTGMNRVGFSPEAYAAAWERLSALPQVGEITHMTHFACADETGGVDEALARFERGVADLGGERTLANSAAVLVHGANPRVAADWVRPGIALYGSSPTGLAPGAAHWELQPAMSLRSELIDLQSIAAGESVGYGARFTAARPMRIGVVACGYADGYPRVAPNGTPVVVDGVRTTLVGRVSMDMITVDLEPVFAAGGQPMIGSSVLLWGQDAQAELCIDDVAASAGTLGYELMCALAARVPVRVE
>NZ_CP020046.1|WP_079416641.1|1075416_1077060_+|DNA-repair-protein-RadA
MAKPQTVYICSDCGGKSAKWQGQCPHCQAWNTLVETVERGADAARPGARHGAAAAQFAGRGGLTAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKSTLLLQVLANLSAELPVLYVSGEESAAQVALRAQRLGLKDAPVRLMAETQLEVVLDELARGPAGGSPGGLPLPTSPATRGRSALSLPTGGEGRGGEPALSGQQANASGEADPVAGPPQGGVRPLGGQRANASVGAYSIAVIDSIQTVYTEALSSAPGSVSQVRECAAQLTRAAKAGGITLVLVGHVTKEGALAGPRVLEHMVDTVLYFEGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHAEPVPGTCVLATLEGTRPLLVEVQALVDSAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVASGDQDVFVNAVGGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRGQERLREAAKLGFSAAIIPAANAPKGSGKGAARQFEGLELHPVSRIEEALDVVRGLG
>NZ_CP020046.1|WP_079416643.1|1077222_1078185_+|cupin-like-domain-containing-protein
MALLAGAHAAPHDPFAAERPAPAHAIEAVDAARFSSHRMGALKHDFHQHPLMQLPRLAQLARDLMPTQQCRFIEPSATQTSAFKHSATTPDGGDIDSVFERIEEPGSWVALYDVQTDPHYAAFLDEVVAKAHDLIGREQPGLFRVAGFIFISAPPSVTPFHIDRENNLWLQIRGRKTMTVFDHRDRDVVAAREVENFIVEGSLAKVRLDERLRDRGTDFEVAAGDGVYFPATSPHMTRTTTDWVRPGEGVSISIGVVFYTAVTRHHARVHQCNRVLRQLGLSPMDPGLSPWRDAAKAPVGRAIAAARARWRGYEAPPGSY
>NZ_CP020046.1|WP_079420348.1|1078178_1079057_-|ethanolamine-ammonia-lyase-subunit-EutC
MNDPTSASAPEAAASPQPESGADPWTHLRRYTRARIALGRRGASLPTAALLDFGLAHAQARDAVHTALDLEALDVDAQAAGLPPSLRVHSAAPDRATYLRRPDLGRQLDAASRALLVEAKAQACDVVFVIADGLSARAAQTHAVPLIAQTLQRLPPGWRVGPLVLARQARVALGDDIGALLRAAQVVMCLGERPGLTAPDSLGLYLTHGPRPGLTDAQRNCISNVRPDGLPYAQAAHKLAWLLAGARRLGMSGVGLKDDSEDHSEGGLPHDTSAHRVLRDEGAAGEMPSSDQ
>NZ_CP020046.1|WP_079416645.1|1079065_1080448_-|ethanolamine-ammonia-lyase-subunit-EutB
MPYTHTIGAVRHVFSDLKTLLARATPPRSGDELAGVAARSAEERMAARLALAEVPLARFLNEAVIPYEADEITRLIVDGHDAAAFAPIAHLTVGGFRDWLLSDGVDGETLAELAPGLTPEMVAAVSKLMRNQDLILVAQKCAVISRFRTTLGLPGRMGVRLQPNHPTDDPAGIAASIVDGLMYGCGDAVIGINPASDNLAAIGSLLRLIDDLRLRYDVPTQSCVLTHVTHTLRAIEQGAPVDLVFQSVAGTQQANAAFGIDLAVLREAHAAAQALRRGTVGDNVMYFETGQGSALSAGAHHGVDQQTCEARAYAVARAFRPLLVNTVVGFIGPEYLYDGKQILRAGLEDHFCGKLLGLPMGCDICYTNHAEADQDDMDNLLTLLGVAGVHFIMGVPGADDIMLGYQSTSFHDALYVRQVLGKRRAPEFEAWLQRMDLADAQGRLAPPRARQPLLTFAEQW
>NZ_CP020046.1|WP_079416647.1|1080627_1081032_+|hypothetical-protein
MQRREFVASSLAVATAAVALPKAAQAAQGSGAMTNVVFTENDPGHWKDVEKLHVPLVKIDGRKMTVTTPHPMSEAHYIVSHTVVLEGGKYLDRKTFNWKDQPVSEHMLPEGYKGKVMVTSTCNLHDWWLKTIDA
>NZ_CP020046.1|WP_079416649.1|1081469_1081850_-|YXWGXW-repeat-containing-protein
MRFPDTFFRRAVLRRSTALMILPTLAAFGLGGCVVAPVPPPQYGYGAPAYDVVNVPPPAPQYEVVGVAPYPGAVWIGGYWGWASGRYVWNRGYWHAPRAGYRWVPHRWVPQGGGWHAQGGRWERGH

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Crispr_ID: NZ_CP020046_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_5

1075275-1075401

Orphan

Consensus_repeat	Method
CCCCTCAAGGGGCGAGAAACTCTTGGGGCGGCCCGGCGAGTTTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_5

>merge|NZ_CP020046|5|1075275-1075401|CRISPRCasFinder
CCCCTCAAGGGGCGAGAAACTCTTGGGGCGGCCCGGCGAGTTTCTGGGTCCACCCCGAAGACCTCCGCTACGCTCGGTCCACCCCTCAAGGGGCGAGAAACTCTTGGGGCGGCCCGGCGAGTTTCTG

>NZ_CP020046|5|5|1075275-1075401|CRISPRCasFinder
CCCCTCAAGGGGCGAGAAACTCTTGGGGCGGCCCGGCGAGTTTCTG	GGTCCACCCCGAAGACCTCCGCTACGCTCGGTCCA
CCCCTCAAGGGGCGAGAAACTCTTGGGGCGGCCCGGCGAGTTTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416655.1\|1084380_1084659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|235482
NZ_CP020046.1\|WP_079416653.1\|1084000_1084270_+\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|376410
NZ_CP020046.1\|WP_079416637.1\|1071666_1072482_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372651
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224944
NZ_CP020046.1\|WP_079416635.1\|1070807_1071611_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183043
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP020046.1\|WP_079416657.1\|1084999_1086286_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP020046.1\|WP_079416634.1\|1067115_1070475_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP020046.1\|WP_079416632.1\|1065867_1066764_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP020046.1\|WP_079416651.1\|1081934_1083794_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_CP020046.1\|WP_079416630.1\|1065333_1065843_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP020046.1\|WP_079416639.1\|1072556_1073888_-\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP020046.1\|WP_079416649.1\|1081469_1081850_-\|YXWGXW-repeat-containing-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	unknown	unknown	gnl\|CDD\|236890
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	3.04269e-123
NZ_CP020046.1\|WP_079416653.1\|1084000_1084270_+\|acyl-CoA-binding-protein	gnl\|CDD\|376410	pfam00887, ACBP, Acyl CoA binding protein.	3.13262e-33
NZ_CP020046.1\|WP_079416637.1\|1071666_1072482_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.73154e-47
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	gnl\|CDD\|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	0.0015844
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	gnl\|CDD\|224944	COG2033, COG2033, Desulfoferrodoxin [Energy production and conversion].	1.54577e-08
NZ_CP020046.1\|WP_079416635.1\|1070807_1071611_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.24132e-36
NZ_CP020046.1\|WP_079416624.1\|1061385_1062879_+\|FAD-binding-protein	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP020046.1\|WP_079416657.1\|1084999_1086286_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.56504e-149
NZ_CP020046.1\|WP_079416634.1\|1067115_1070475_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.75389e-59
NZ_CP020046.1\|WP_079416632.1\|1065867_1066764_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.57081e-07
NZ_CP020046.1\|WP_079416651.1\|1081934_1083794_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_CP020046.1\|WP_079416630.1\|1065333_1065843_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	3.55933e-96
NZ_CP020046.1\|WP_079416639.1\|1072556_1073888_-\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP020046.1\|WP_079416628.1\|1064075_1065308_+\|glycolate-oxidase-subunit-GlcF	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
NZ_CP020046.1\|WP_079416626.1\|1062939_1064070_+\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	7.64002e-166

>NZ_CP020046.1|WP_079420346.1|1074130_1075234_+|alanine-racemase
MPRPISAVIHTASLSHNLARVRRAAPGSKVWAVVKANAYGHGIARAYGALRAADGFALLDLAEAEQLRALGWVGPILLLEGCFAAEDLALCERLNLWHVVHCREQIDWLAMHRGSRAHRVFLKLNTGMNRVGFSPEAYAAAWERLSALPQVGEITHMTHFACADETGGVDEALARFERGVADLGGERTLANSAAVLVHGANPRVAADWVRPGIALYGSSPTGLAPGAAHWELQPAMSLRSELIDLQSIAAGESVGYGARFTAARPMRIGVVACGYADGYPRVAPNGTPVVVDGVRTTLVGRVSMDMITVDLEPVFAAGGQPMIGSSVLLWGQDAQAELCIDDVAASAGTLGYELMCALAARVPVRVE
>NZ_CP020046.1|WP_079416639.1|1072556_1073888_-|lysophospholipid-transporter-LplT
MKKGFYWIMAAQFFSSLADNALLIAAIALLVQMQSPDWMTPLLKFFFTISYVVLAPFVGAFADAILKWKVMFITNLVKVAGLVLMLFSVHPLLAYGVVGLGAAAYSPAKYGILTELLPPQQLVAANGWIEGTTVSSIILGTVLGGFLVSQSASTFLLGLPGVASLGIDTTPESAILVITLVYLVAALCNLRIPDTGARYEKQKARPVALLMDFAHCTKVLWTDKLGQISLAVTTLFWGAGATLQFIVLKWAEYALGLDLTMSSVMQAAVALGVAVGAISAAVRVPLKRSLSVLPLGVGMGLTTVALAFFHRDLLPDVTLHLWTLQLPLYMLVAYSVMVFIGALAGYFVVPMNALLQHRGYVLLSAGHSIAVQNFNENLSVLLMLLFYALLIRLDLPVPWVIALFGAFVSLTMFLVILWYRRNQRERDWTQLIGEPRHRDEPHS
>NZ_CP020046.1|WP_079416637.1|1071666_1072482_-|mechanosensitive-ion-channel-family-protein
MNDVQHYSNLLLQYATEAGMKILAAIALWILGRWLIRMADKLLRGMLERQRFDPMLTRYIISFVSIALNIVLVVAILGYFGVQTTTFAALVAGAGVAIGAAWSGLLGNFAAGAFLLVLKPFKVGDFVKAGEVTGTVKEVGLFVTSLVTLDNVLTFVGNGKILGNTIENFSTNDYRRVDLKCQLSSDADHAAAMDLLRKQVQAIPNVLANPAPVIEILEFNSVGPVLTVFPFCNNAHYWQVYFDTNRTIREALSQAGFAYALPKQVWVGKAQ
>NZ_CP020046.1|WP_079416635.1|1070807_1071611_-|TlpA-family-protein-disulfide-reductase
MDALRLGPLVLPWSPLLLVLGYAAAVWVAGLAQKTGRGNAEPLLLPLLVLALVAARAGFVARHGADYASVLAMIDIRDRGFDAWTGWSVAVVAVAFVAWRRPALRRSLPLSAGAGAALVLAGLATLSLIQPPRPPLPDLTLQTLQGRPVALASLRGQPAVVNLWATWCPPCRRELPLLIQAAQQQTGARIVLVNEGETASRVAGYLARERLGQPEILLDPDSRLLSAYQSPGLPTTLFIGADGQVKALHIGELSAATLQQGIAALQR
>NZ_CP020046.1|WP_079416634.1|1067115_1070475_+|EAL-domain-containing-protein
MQEREIALRLLDLPSEMLRGLAEGRPVAELAAMLCRMAEASAPGRIASVLRIGSDGALHPLTAPSSPPDMLAALDGLNPGPHAGSCGNAVFHNAPTFIEDIPSDDRWDDLRAVAEQWQLRSCWSWPVRDGAQVIGSFALTGLEPGAPNADERRLLEFVASMVGALLHMDQLQRERESAERLRQAMLDNALVAIALVGGRIIRSGNARMARMFGYPDTASLQGLPARALYADDAVFASVGAELYAAMTRGESVTREVPMRRSDGSLFWCELTGQAVTGQPGVDSVWVAQDVSERHAADERMRWQARHDALTRLPNRYALDEWLPNRLAEARLRGAVVAIGLLDLDDFKAINDLWGHAAGDAVLKQVAQQLGASLDARDLLARIGGDEFVLVIEGPEGDADIERRLASLGELLPLAVPLPEDKVSHLGLSLGLAVFPHDGDDPDTLLRRADAALHSIKLHKRTRQHWWLRWGHEVESDLIEDGIDHWLPQPYGPQAEALLRIAAPHYHGVAAAFIDQFYALVGRDAESSLLLSHLTPEEFTHLKARQVDHFRRLLGPELLEAEHVREATRIGEIHALVGVPTRLLVQSAGLYLQALIDMSHAMPARSRDRRRIVQLLTARMQSELQTEVEAAQALRERYQQCVIALEHALQDGAPWSEFMQMALDRLITLPGLKAAGMGAPDANGEFVVELSSGLEPFARAMQKHYGALKVPKLQGSHAESIGPTAAAWQTEQVCTLASYALDEAGTPWREAALEASIRSAASIPLTDRNGRVVVVLSLYGSYPAMFERSAARSFLDNLGQTLSRAWQRLHAHSRQQPVPVALRQRWRTSLFDHGLEMHLQPVVDLQTGKPYAVEALARLRMDDGSLAMPGQFLPWFGHAELSRLFRGGLEQTLAHIARWDTEGVRLNLSLNLPLDVLLQPDCRDRVAAALHSAGVAPERLSLEMLENAEFDDPKRRDDAVRELAATGVRLVMDDLGSGYSSLLRLRTLPFHTVKIDQSLVREAGRDPEQAIGFIGALVQLAQSLGLWVVVEGLETPDLVEAATLLGADAGQGYALARPMPAADVPNWVRHFHCPIDPRHPSTQLGRLALDWMAQHGRQLADESARRLLHAARRKALGTRA
>NZ_CP020046.1|WP_079416632.1|1065867_1066764_-|DMT-family-transporter
MHPSRFTLAAISGLMLNAFVWGVSWWPFRHLNGLGLNPLWATALMYAVSTVIIVVARPSALRALWRHPPLWGILIASGATNAAFNWGVTEGDVVRVVLLFYLMPVWATLLARWLLDERLTRLVGLRLALALAGAMVVLWPRGGGLPLPQHPADWLGVIGGMFFALNNVLLRKYAHTPPEARGLAMFAGGVIVAGGVAAVLTAQGSVSPVPALAPAWVVPVVLMALAFLAANLGLQYGAERLPSTMTAVVMTVEIVFASGSAMLLGAEHLSAQALFGGSLILLAILLAAWPRAAAPQTA
>NZ_CP020046.1|WP_079416630.1|1065333_1065843_-|glutathione-peroxidase
MTAAAPVHTAFDFSALDIEGREQALAQWRGRVLLIVNTASACGFTPQYAGLQALQERYGLKGFTVLAFPCNQFGAQEPGSAEEIAQFCTSRYATTFPLFAKVEVNGEHAHALWRWLTREASGLLGSHAIKWNFTKFLVGRDGQVLKRYAPQERPESIGPDIEMALQAPG
>NZ_CP020046.1|WP_079416628.1|1064075_1065308_+|glycolate-oxidase-subunit-GlcF
METHLSPEFADTPEGQQAEAILRNCVHCGFCTATCPTYQLLGDELDGPRGRIYQIKQVLEGEAPTRNTQLHLDRCLTCRNCETTCPSGVEYGRLVDIGRTVVDAKVERPAGEKLARWVLREGMTSSLFAPALKLGQALRPLVPAALRDKVPPRQRSGKRPQRTHARKVLMLGGCVQPALMPNIGAATARVLDAVGVQPLLADGAGCCGAIRQHLADHGGALADMKRNVDAWWPLVESGTVEAIVMDASGCGAMVSEYGHHLQHDPAYADRAQRIGALCLDISEYLPQFAAPLKTLLKNKPVDHLAYHPPCTLQHAQQVRGKAETLLRDLGFEVKLPLESHLCCGSAGTYSVLQPELSKELRNRKLQHLAETAPQRIVSSNIGCIQHLQTGTTIPVQHWVELLDEALHGKP
>NZ_CP020046.1|WP_079416626.1|1062939_1064070_+|glycolate-oxidase-subunit-GlcE
MQADVLIPLWQDLVREAASRGERIRIHGGGSKAPWWAAAQHSGADTAEHTLDATLLSGINHFEPTELVITARAGTPLTEIEAALAEHHQFLPFEPPHFARASGGQATLGGMVASAMSGPARISAGGVRDYVLGASLLSGRGEVLRFGGEVMKNVAGFDVSRLLCGSLGSLGVILDVSLKILPVAPAETSLRFAMTQDEAIARCNAWAAQPLPLNASAWLPDRSGSSGKGVLTVRLRGARAAVQAAGAKLGGERMADTDAATFWTALREQTLPWFTPTWPGDSQAALWRLSLPTTAPALDLSGTQLVEWFGGLRWLISAAPASIILEAARQAGGHATRFRGGDARAPVFEPTQATLLRIQRQIKTAFDPHGVFPTLF
>NZ_CP020046.1|WP_079416624.1|1061385_1062879_+|FAD-binding-protein
MNAPLQPDLAARAARQAEVVAALGAVVPPHILLWQPEEVTPYECDGLSAYRRKPLVVVLPETEAQVAAVLKACHRLNVPVVARGAGTGLSGGALPNEDGVLLALARFNRIKRVDPVARTATVECGVRNLAISEAAAPHGLFYAPDPSSQIACTIGGNIAENSGGVHCLKYGLTVHNVLQVRGYTVEGEPLTVGGLACDCPGPDLLAAVIGSEGMLMVVTEVTVKLLPKPVLARCIMASFDDLRKAGDAVAAIIAAGIIPAGLEMMDQPMTVAAESFVHAGYDLDARAILLCESDGTPEEVEEEIGRMTEVLSLCGATALKCSESEAERLRFWSGRKNAFPATGRISPDYYCMDGTIPRKRVADMLEAIQGMEGKYGLRCVNVFHAGDGNLHPLILFDANQPGELHRAEAFGAEILETSVAMGGTVTGEHGVGYEKINAMCVQFSPEEREQFFAFRRAFDPGETLNPGKQIPTHARCAEYGKMHVRGGLLPFPDLPRF
>NZ_CP020046.1|WP_079416641.1|1075416_1077060_+|DNA-repair-protein-RadA
MAKPQTVYICSDCGGKSAKWQGQCPHCQAWNTLVETVERGADAARPGARHGAAAAQFAGRGGLTAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKSTLLLQVLANLSAELPVLYVSGEESAAQVALRAQRLGLKDAPVRLMAETQLEVVLDELARGPAGGSPGGLPLPTSPATRGRSALSLPTGGEGRGGEPALSGQQANASGEADPVAGPPQGGVRPLGGQRANASVGAYSIAVIDSIQTVYTEALSSAPGSVSQVRECAAQLTRAAKAGGITLVLVGHVTKEGALAGPRVLEHMVDTVLYFEGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHAEPVPGTCVLATLEGTRPLLVEVQALVDSAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVASGDQDVFVNAVGGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRGQERLREAAKLGFSAAIIPAANAPKGSGKGAARQFEGLELHPVSRIEEALDVVRGLG
>NZ_CP020046.1|WP_079416643.1|1077222_1078185_+|cupin-like-domain-containing-protein
MALLAGAHAAPHDPFAAERPAPAHAIEAVDAARFSSHRMGALKHDFHQHPLMQLPRLAQLARDLMPTQQCRFIEPSATQTSAFKHSATTPDGGDIDSVFERIEEPGSWVALYDVQTDPHYAAFLDEVVAKAHDLIGREQPGLFRVAGFIFISAPPSVTPFHIDRENNLWLQIRGRKTMTVFDHRDRDVVAAREVENFIVEGSLAKVRLDERLRDRGTDFEVAAGDGVYFPATSPHMTRTTTDWVRPGEGVSISIGVVFYTAVTRHHARVHQCNRVLRQLGLSPMDPGLSPWRDAAKAPVGRAIAAARARWRGYEAPPGSY
>NZ_CP020046.1|WP_079420348.1|1078178_1079057_-|ethanolamine-ammonia-lyase-subunit-EutC
MNDPTSASAPEAAASPQPESGADPWTHLRRYTRARIALGRRGASLPTAALLDFGLAHAQARDAVHTALDLEALDVDAQAAGLPPSLRVHSAAPDRATYLRRPDLGRQLDAASRALLVEAKAQACDVVFVIADGLSARAAQTHAVPLIAQTLQRLPPGWRVGPLVLARQARVALGDDIGALLRAAQVVMCLGERPGLTAPDSLGLYLTHGPRPGLTDAQRNCISNVRPDGLPYAQAAHKLAWLLAGARRLGMSGVGLKDDSEDHSEGGLPHDTSAHRVLRDEGAAGEMPSSDQ
>NZ_CP020046.1|WP_079416645.1|1079065_1080448_-|ethanolamine-ammonia-lyase-subunit-EutB
MPYTHTIGAVRHVFSDLKTLLARATPPRSGDELAGVAARSAEERMAARLALAEVPLARFLNEAVIPYEADEITRLIVDGHDAAAFAPIAHLTVGGFRDWLLSDGVDGETLAELAPGLTPEMVAAVSKLMRNQDLILVAQKCAVISRFRTTLGLPGRMGVRLQPNHPTDDPAGIAASIVDGLMYGCGDAVIGINPASDNLAAIGSLLRLIDDLRLRYDVPTQSCVLTHVTHTLRAIEQGAPVDLVFQSVAGTQQANAAFGIDLAVLREAHAAAQALRRGTVGDNVMYFETGQGSALSAGAHHGVDQQTCEARAYAVARAFRPLLVNTVVGFIGPEYLYDGKQILRAGLEDHFCGKLLGLPMGCDICYTNHAEADQDDMDNLLTLLGVAGVHFIMGVPGADDIMLGYQSTSFHDALYVRQVLGKRRAPEFEAWLQRMDLADAQGRLAPPRARQPLLTFAEQW
>NZ_CP020046.1|WP_079416647.1|1080627_1081032_+|hypothetical-protein
MQRREFVASSLAVATAAVALPKAAQAAQGSGAMTNVVFTENDPGHWKDVEKLHVPLVKIDGRKMTVTTPHPMSEAHYIVSHTVVLEGGKYLDRKTFNWKDQPVSEHMLPEGYKGKVMVTSTCNLHDWWLKTIDA
>NZ_CP020046.1|WP_079416649.1|1081469_1081850_-|YXWGXW-repeat-containing-protein
MRFPDTFFRRAVLRRSTALMILPTLAAFGLGGCVVAPVPPPQYGYGAPAYDVVNVPPPAPQYEVVGVAPYPGAVWIGGYWGWASGRYVWNRGYWHAPRAGYRWVPHRWVPQGGGWHAQGGRWERGH
>NZ_CP020046.1|WP_079416651.1|1081934_1083794_-|ABC-transporter-ATP-binding-protein/permease
MQTQPTAQSYRFAFRHFYALAKPYLVSEEKKKGWGLLLLVLAMNLALVWVNVKLTQWNGDFFNALQAKNFGAFKQLLLIFTGYAFLYIALAVYSQYFLQMLQISWRRWMTEVFLKDWLAGGTHYRMSLRQGNTDNPDQRIADDIGGFINGSLNLFFGFVSSLVTLFSFLFMLWVLSGAITLFGITIPGYMVWVALLYAGVGSVLAHWVGKPLIRLNFFQQRYEADFRFGLARTREHDEGIALYNGEARELAGHRSRFANVWSNWWGIMKRQKLFTWYSAFYGQLAIIFPILVAAPRYFAGQIQLGGLTQTSQAFGQVQGALSWFIGAYTSIADWRATVERLQTFVDAMHQSQQNPHDPAPASPAGRPSGTPPTTAGVVPLRSARESVALGDLLLLAPDGRPLLQCAGEHISRGQHTLFTGPSGSGKSTLVRWLAGIWPYALNAAHAHAPSGRTLFLPQKPYLPLGTLKQALTYPQSPDDFSAAQISEALQLARVPYLEAALEQTDTWMQRLSPGEQQRLAVARALLIAPDWLFMDEATSALDAPTERAMYALLQQRLPEATLVSVAHRVGVIEFHAQIYAIDVDPTRQGPARIERRDAEQARKAALGEGAIADASAVAS
>NZ_CP020046.1|WP_079416653.1|1084000_1084270_+|acyl-CoA-binding-protein
MTDSAPTNDLQAAFDAAIAHSKTLATRPDNLTLLQLYALYKQGSSGDVAGERPGMTDFVARAKWDAWAALRGASRAQAMQDYIERVRGL
>NZ_CP020046.1|WP_079416655.1|1084380_1084659_+|hypothetical-protein
MTDTNAIIHFAQAFHHGEAEQHSYVVAIGSRAIVEALARAEHARLRGAYGVAIYRTSPDVATQDHFRLVGYLSSDMGEKWTCSQPDESQQAA
>NZ_CP020046.1|WP_079416657.1|1084999_1086286_-|TRAP-transporter-large-permease-subunit
MNATIIFALLVALMLTGMPVSIALGLTVLTFLFAFSDVPIQAVALKLFTGIEKFEIMAIPFFILAGNFLTHGGVARRMILFATSMIGHWPGGLALAGVMACALFAAVSGSSPATVVAIGSILIPAMVKAGFPPRFGAGAITSSGALGILIPPSIVMVMYAVSTNSSIGALFMAGVVPGLILAAMLGATTWWRAWRGRYPRQPRASWAARGRALRESVWGLLLIVIVLGGIYTGLFTPTEAAAMSAVYAFIIAVFVYKDLKLSDVPRVLLASANMSAMLLYIITNAVLFSFLMTSEQVPQGIAQWLLDAGLGPVVFLLLVNLLLLVAGNVMEPSSIVLILAPILFPVAVHLGIDPIHFGIIMVVNMEIGMLTPPVGLNLYVASGIAKMGITELTLAVWPWLLTMLVFLGLVTYIPAISLVFPRWLGMVP

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Crispr_ID: NZ_CP020046_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_6

1084838-1084935

Orphan

Consensus_repeat	Method
ACTCCTCCCCCACAGAGTGGGGGAGGTTGGGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_6

>merge|NZ_CP020046|6|1084838-1084935|CRISPRCasFinder
ACTCCTCCCCCACAGAGTGGGGGAGGTTGGGAGGGCATACGCAGATCGCGCGCAGCGCTATTTACTCCTCCCCCACAGAGTGGGGGAGGTTGGGAGGG

>NZ_CP020046|6|6|1084838-1084935|CRISPRCasFinder
ACTCCTCCCCCACAGAGTGGGGGAGGTTGGGAGGG	CATACGCAGATCGCGCGCAGCGCTATTT
ACTCCTCCCCCACAGAGTGGGGGAGGTTGGGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416655.1\|1084380_1084659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416653.1\|1084000_1084270_+\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|376410
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP020046.1\|WP_079416659.1\|1086282_1086906_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372651
NZ_CP020046.1\|WP_079416671.1\|1092663_1093215_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP020046.1\|WP_079416661.1\|1086985_1088002_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270392
NZ_CP020046.1\|WP_079416669.1\|1090098_1092648_-\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236172
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|235482
NZ_CP020046.1\|WP_079416657.1\|1084999_1086286_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP020046.1\|WP_079416665.1\|1088497_1089262_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP020046.1\|WP_079416663.1\|1088176_1088371_-\|DUF3149-domain-containing-protein	unknown	unknown	gnl\|CDD\|371481
NZ_CP020046.1\|WP_079416651.1\|1081934_1083794_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NZ_CP020046.1\|WP_079416673.1\|1095655_1096423_+\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NZ_CP020046.1\|WP_079420350.1\|1093448_1093907_+\|SET-domain-containing-protein-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|380929
NZ_CP020046.1\|WP_079416649.1\|1081469_1081850_-\|YXWGXW-repeat-containing-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP020046.1\|WP_079416667.1\|1089274_1090030_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224944

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079416653.1\|1084000_1084270_+\|acyl-CoA-binding-protein	gnl\|CDD\|376410	pfam00887, ACBP, Acyl CoA binding protein.	3.13262e-33
NZ_CP020046.1\|WP_079416647.1\|1080627_1081032_+\|hypothetical-protein	gnl\|CDD\|224944	COG2033, COG2033, Desulfoferrodoxin [Energy production and conversion].	1.54577e-08
NZ_CP020046.1\|WP_079416659.1\|1086282_1086906_-\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	1.75746e-28
NZ_CP020046.1\|WP_079416643.1\|1077222_1078185_+\|cupin-like-domain-containing-protein	gnl\|CDD\|372651	pfam13621, Cupin_8, Cupin-like domain. This cupin like domain shares similarity to the JmjC domain.	0.0015844
NZ_CP020046.1\|WP_079416671.1\|1092663_1093215_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.31058e-28
NZ_CP020046.1\|WP_079416661.1\|1086985_1088002_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270392	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.85117e-159
NZ_CP020046.1\|WP_079416669.1\|1090098_1092648_-\|DNA-topoisomerase-III	gnl\|CDD\|236172	PRK08173, PRK08173, DNA topoisomerase III; Validated.	0
NZ_CP020046.1\|WP_079420348.1\|1078178_1079057_-\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	3.04269e-123
NZ_CP020046.1\|WP_079416657.1\|1084999_1086286_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.56504e-149
NZ_CP020046.1\|WP_079416665.1\|1088497_1089262_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	6.18182e-101
NZ_CP020046.1\|WP_079416663.1\|1088176_1088371_-\|DUF3149-domain-containing-protein	gnl\|CDD\|371481	pfam11346, DUF3149, Protein of unknown function (DUF3149). This bacterial family of proteins has no known function.	2.23233e-13
NZ_CP020046.1\|WP_079416651.1\|1081934_1083794_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NZ_CP020046.1\|WP_079416673.1\|1095655_1096423_+\|SPOR-domain-containing-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.90834e-05
NZ_CP020046.1\|WP_079416645.1\|1079065_1080448_-\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NZ_CP020046.1\|WP_079420350.1\|1093448_1093907_+\|SET-domain-containing-protein-lysine-N-methyltransferase	gnl\|CDD\|380929	cd10531, SET_SETD2-like, SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins. This family includes SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2) and ASH1-like protein (ASH1L), which function as histone-lysine N-methyltransferases. SETD2 specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. NSD2 shows histone H3 'Lys-27' (H3K27me) methyltransferase activity. ASH1L specifically methylates 'Lys-36' of histone H3 (H3K36me). The family also includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins.	5.62476e-35
NZ_CP020046.1\|WP_079416641.1\|1075416_1077060_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP020046.1\|WP_079416667.1\|1089274_1090030_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	1.12986e-77
NZ_CP020046.1\|WP_079420346.1\|1074130_1075234_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0

>NZ_CP020046.1|WP_079416655.1|1084380_1084659_+|hypothetical-protein
MTDTNAIIHFAQAFHHGEAEQHSYVVAIGSRAIVEALARAEHARLRGAYGVAIYRTSPDVATQDHFRLVGYLSSDMGEKWTCSQPDESQQAA
>NZ_CP020046.1|WP_079416653.1|1084000_1084270_+|acyl-CoA-binding-protein
MTDSAPTNDLQAAFDAAIAHSKTLATRPDNLTLLQLYALYKQGSSGDVAGERPGMTDFVARAKWDAWAALRGASRAQAMQDYIERVRGL
>NZ_CP020046.1|WP_079416651.1|1081934_1083794_-|ABC-transporter-ATP-binding-protein/permease
MQTQPTAQSYRFAFRHFYALAKPYLVSEEKKKGWGLLLLVLAMNLALVWVNVKLTQWNGDFFNALQAKNFGAFKQLLLIFTGYAFLYIALAVYSQYFLQMLQISWRRWMTEVFLKDWLAGGTHYRMSLRQGNTDNPDQRIADDIGGFINGSLNLFFGFVSSLVTLFSFLFMLWVLSGAITLFGITIPGYMVWVALLYAGVGSVLAHWVGKPLIRLNFFQQRYEADFRFGLARTREHDEGIALYNGEARELAGHRSRFANVWSNWWGIMKRQKLFTWYSAFYGQLAIIFPILVAAPRYFAGQIQLGGLTQTSQAFGQVQGALSWFIGAYTSIADWRATVERLQTFVDAMHQSQQNPHDPAPASPAGRPSGTPPTTAGVVPLRSARESVALGDLLLLAPDGRPLLQCAGEHISRGQHTLFTGPSGSGKSTLVRWLAGIWPYALNAAHAHAPSGRTLFLPQKPYLPLGTLKQALTYPQSPDDFSAAQISEALQLARVPYLEAALEQTDTWMQRLSPGEQQRLAVARALLIAPDWLFMDEATSALDAPTERAMYALLQQRLPEATLVSVAHRVGVIEFHAQIYAIDVDPTRQGPARIERRDAEQARKAALGEGAIADASAVAS
>NZ_CP020046.1|WP_079416649.1|1081469_1081850_-|YXWGXW-repeat-containing-protein
MRFPDTFFRRAVLRRSTALMILPTLAAFGLGGCVVAPVPPPQYGYGAPAYDVVNVPPPAPQYEVVGVAPYPGAVWIGGYWGWASGRYVWNRGYWHAPRAGYRWVPHRWVPQGGGWHAQGGRWERGH
>NZ_CP020046.1|WP_079416647.1|1080627_1081032_+|hypothetical-protein
MQRREFVASSLAVATAAVALPKAAQAAQGSGAMTNVVFTENDPGHWKDVEKLHVPLVKIDGRKMTVTTPHPMSEAHYIVSHTVVLEGGKYLDRKTFNWKDQPVSEHMLPEGYKGKVMVTSTCNLHDWWLKTIDA
>NZ_CP020046.1|WP_079416645.1|1079065_1080448_-|ethanolamine-ammonia-lyase-subunit-EutB
MPYTHTIGAVRHVFSDLKTLLARATPPRSGDELAGVAARSAEERMAARLALAEVPLARFLNEAVIPYEADEITRLIVDGHDAAAFAPIAHLTVGGFRDWLLSDGVDGETLAELAPGLTPEMVAAVSKLMRNQDLILVAQKCAVISRFRTTLGLPGRMGVRLQPNHPTDDPAGIAASIVDGLMYGCGDAVIGINPASDNLAAIGSLLRLIDDLRLRYDVPTQSCVLTHVTHTLRAIEQGAPVDLVFQSVAGTQQANAAFGIDLAVLREAHAAAQALRRGTVGDNVMYFETGQGSALSAGAHHGVDQQTCEARAYAVARAFRPLLVNTVVGFIGPEYLYDGKQILRAGLEDHFCGKLLGLPMGCDICYTNHAEADQDDMDNLLTLLGVAGVHFIMGVPGADDIMLGYQSTSFHDALYVRQVLGKRRAPEFEAWLQRMDLADAQGRLAPPRARQPLLTFAEQW
>NZ_CP020046.1|WP_079420348.1|1078178_1079057_-|ethanolamine-ammonia-lyase-subunit-EutC
MNDPTSASAPEAAASPQPESGADPWTHLRRYTRARIALGRRGASLPTAALLDFGLAHAQARDAVHTALDLEALDVDAQAAGLPPSLRVHSAAPDRATYLRRPDLGRQLDAASRALLVEAKAQACDVVFVIADGLSARAAQTHAVPLIAQTLQRLPPGWRVGPLVLARQARVALGDDIGALLRAAQVVMCLGERPGLTAPDSLGLYLTHGPRPGLTDAQRNCISNVRPDGLPYAQAAHKLAWLLAGARRLGMSGVGLKDDSEDHSEGGLPHDTSAHRVLRDEGAAGEMPSSDQ
>NZ_CP020046.1|WP_079416643.1|1077222_1078185_+|cupin-like-domain-containing-protein
MALLAGAHAAPHDPFAAERPAPAHAIEAVDAARFSSHRMGALKHDFHQHPLMQLPRLAQLARDLMPTQQCRFIEPSATQTSAFKHSATTPDGGDIDSVFERIEEPGSWVALYDVQTDPHYAAFLDEVVAKAHDLIGREQPGLFRVAGFIFISAPPSVTPFHIDRENNLWLQIRGRKTMTVFDHRDRDVVAAREVENFIVEGSLAKVRLDERLRDRGTDFEVAAGDGVYFPATSPHMTRTTTDWVRPGEGVSISIGVVFYTAVTRHHARVHQCNRVLRQLGLSPMDPGLSPWRDAAKAPVGRAIAAARARWRGYEAPPGSY
>NZ_CP020046.1|WP_079416641.1|1075416_1077060_+|DNA-repair-protein-RadA
MAKPQTVYICSDCGGKSAKWQGQCPHCQAWNTLVETVERGADAARPGARHGAAAAQFAGRGGLTAASGPVLLTEVQAERHAHRTSGIDELDRVLGGGLVPGGVLLLGGDPGIGKSTLLLQVLANLSAELPVLYVSGEESAAQVALRAQRLGLKDAPVRLMAETQLEVVLDELARGPAGGSPGGLPLPTSPATRGRSALSLPTGGEGRGGEPALSGQQANASGEADPVAGPPQGGVRPLGGQRANASVGAYSIAVIDSIQTVYTEALSSAPGSVSQVRECAAQLTRAAKAGGITLVLVGHVTKEGALAGPRVLEHMVDTVLYFEGDTQSRFRLIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLSTHAEPVPGTCVLATLEGTRPLLVEVQALVDSAAAPSPRRLSVGLDAARLAMLLAVLHRHAGVASGDQDVFVNAVGGVRITEPAADLAVLLAIQSSLRNRPLPRGLLAFGEVGLAGEIRPAPRGQERLREAAKLGFSAAIIPAANAPKGSGKGAARQFEGLELHPVSRIEEALDVVRGLG
>NZ_CP020046.1|WP_079420346.1|1074130_1075234_+|alanine-racemase
MPRPISAVIHTASLSHNLARVRRAAPGSKVWAVVKANAYGHGIARAYGALRAADGFALLDLAEAEQLRALGWVGPILLLEGCFAAEDLALCERLNLWHVVHCREQIDWLAMHRGSRAHRVFLKLNTGMNRVGFSPEAYAAAWERLSALPQVGEITHMTHFACADETGGVDEALARFERGVADLGGERTLANSAAVLVHGANPRVAADWVRPGIALYGSSPTGLAPGAAHWELQPAMSLRSELIDLQSIAAGESVGYGARFTAARPMRIGVVACGYADGYPRVAPNGTPVVVDGVRTTLVGRVSMDMITVDLEPVFAAGGQPMIGSSVLLWGQDAQAELCIDDVAASAGTLGYELMCALAARVPVRVE
>NZ_CP020046.1|WP_079416657.1|1084999_1086286_-|TRAP-transporter-large-permease-subunit
MNATIIFALLVALMLTGMPVSIALGLTVLTFLFAFSDVPIQAVALKLFTGIEKFEIMAIPFFILAGNFLTHGGVARRMILFATSMIGHWPGGLALAGVMACALFAAVSGSSPATVVAIGSILIPAMVKAGFPPRFGAGAITSSGALGILIPPSIVMVMYAVSTNSSIGALFMAGVVPGLILAAMLGATTWWRAWRGRYPRQPRASWAARGRALRESVWGLLLIVIVLGGIYTGLFTPTEAAAMSAVYAFIIAVFVYKDLKLSDVPRVLLASANMSAMLLYIITNAVLFSFLMTSEQVPQGIAQWLLDAGLGPVVFLLLVNLLLLVAGNVMEPSSIVLILAPILFPVAVHLGIDPIHFGIIMVVNMEIGMLTPPVGLNLYVASGIAKMGITELTLAVWPWLLTMLVFLGLVTYIPAISLVFPRWLGMVP
>NZ_CP020046.1|WP_079416659.1|1086282_1086906_-|TRAP-transporter-small-permease
MSVLALFNRLLDRLEEMLIALLMAVATLIIFVAVVHRYLAGLAIPGLQDWLLSINLSWAQELTIFMFVWMAKFGAAYGVRTGIHVGVDVMVNRLSPSRRKPVILFGLLAGALFTGVIAAFGANFVWHLSQTDQTTPDLEWPAWIVYLAIPLGSSLMCYRFLQVAWRFRRDGELPHHDPGQVEGLDEPLSNDPAGDGQHPRFPGEIAR
>NZ_CP020046.1|WP_079416661.1|1086985_1088002_-|TRAP-transporter-substrate-binding-protein
MHRRQAVMGLGLAAAGLGLGSLARAQQPIVIKFSHVVAPNTPKGQAAEYFKKLAEERTKGRVKVEIYPNSQLYKDKEEMEALQLGSVQMLAPSLAKFGPLGVKEFELFDLPYIFDNYDELHKITQGPIGNGLLKKLESKGILGLAYWDNGFKDMSANKPLKNPADAKGLKMRIQSSKILDMEMRAIGAIPQVLAFSEVYQALQTGVVDGTENPPSNFYTQKFFEVQKAMTQTQHGYLGYAVIVNQKFWDGLPADIRKTLDQAMVEATEFANRVAKKDNDDATEAVRKSGKCEVIALTLAERLAWKKAMVPVYKQAESRVPKALMDEVFKATGFDPAKL
>NZ_CP020046.1|WP_079416663.1|1088176_1088371_-|DUF3149-domain-containing-protein
MGSAWQGLFGTDYGLFSLIGILFMLGMGVFFIWFFTRKIQQSTDEHARELRAGGGKPPSPNGHA
>NZ_CP020046.1|WP_079416665.1|1088497_1089262_+|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MNAPRTGIVSAIAQEQKGLIDALLDARCVRRGQRDYTLGTLWGREVVLVLCGIGKVAAAATTTSLIVEFGCDALLFTGVAGGLDGRVRVGDLVIAETLLQHDLDARPLYPQYEVPDTGRSRFDSDAALTARLHLAAEALFATGAPSLIESATREAFGLHAPRVHRGLIVSGDRFISTEAESDRLRQALPEALAVEMEGAAVAQVCHDYDVAFAVARTISDRADDTAHLDFGRFIEAVASPYSLALLAALWRVHE
>NZ_CP020046.1|WP_079416667.1|1089274_1090030_-|glycerophosphodiester-phosphodiesterase
MTDAHFDWRWFAHRGGGDAAPENTLAAFETGLKAGFRAFECDVKLSADGVLWLLHDDTLDRTTDARGLAAPWRWASLQMVDAGGWHSARFKGEPPPSLDEVLDFAARHDAWLNLEIKPNPDQDARTGDAVARRVAQWVADHPQAPRPLLSSFSLAALQAARTTLDDLNVELPLAYLVEVYEPQALTQALALRAEGLHTDWPQVTPEVIAAVHGKGLKLRAYTVNAAEAAKSLLADGLDGLFTDRLDLPARL
>NZ_CP020046.1|WP_079416669.1|1090098_1092648_-|DNA-topoisomerase-III
MSNSEAFSKTLVIAEKPSVAQDIVRALTPQSGKFDKHDDHFENAQYVVTSAVGHLVEIKAPEDFEVKRGKWSFAHLPVIPPHFDLNPIEKTKSRLGAVVKQIKRKDVTALVNACDAGREGELIFRLILQYAEGKKALDKPVQRLWLQSMTPQAIRDGFERLRGDTDMRPLADAARSRSEADWLVGINGTRAMTAFNSRDGGFFLTPVGRVQTPTLSIVVIREEQIRKHVARDYFEVHAQFAASAGGYAGKWFDPGFKKGEDGDARADRLWDRARAEAIVAACAGRPAVVRDESKPSTQLSPALFDLTSLQREANGRFGFSAKTTLSLAQALYEKHKALTYPRTDSRHLPEDYLAVAQQTAQALSDAGGGIAPHARRALAADYIRPNKRVFDNTKVSDHFAIIPTTQMPGALSEAEAKIYDLVVRRFLAVFFPAAEYLVTSRISTVAQHTFKTEGKILVKPGWLEIYGKEEQGDDANLPPVAEGEEVTAETVDLKALKTRPPARYSEATLLGAMENAGKLVEDEELAEAMSGKGLGTPATRAAIIEGLLGEAYMLREGRELIPTAKAFQLMTLLRGLQVEELTKPELTGGWEHKLAQMERGQITREQFMRDIAGMTETIVRRAKEFDRDTVPGDYATLQTPCPNCGGVVKENYHRFACTQCDFSIGKHPGGRSFELAEVEHLLRDKQLGPLTGFRSKMGRPFAAELKLAREGGQGQWKLEFDFGDSAPGSDGGEAPDFSAQQPLGACPKCGSAVFEAGNGYVCEKSVGPAPSCDFRSGKIILQQPIETEQMRKLLETGRTDLLDGFVSARTKRKFKAFLVKQAGGKIGFEFEPRPAKAPAKKAAAKKTAA
>NZ_CP020046.1|WP_079416671.1|1092663_1093215_-|TlpA-family-protein-disulfide-reductase
MNQHRRWQLKGWAAALAAVATPTWAQTMAEQASALEKKDKKAVPLPKEGSRFSLPPAVELIDGKTLHTHDWAGKVIVLEYWATWCPFCARQMPHVEALYKKEHGRGLEVLALSIDKKPTDIPPYLKTKNYTFPVAWLSPALAKVLPKPAGLPVTIVIGRDGRVKMADSGELFAEDIAGIAKYL
>NZ_CP020046.1|WP_079420350.1|1093448_1093907_+|SET-domain-containing-protein-lysine-N-methyltransferase
MGPYTQVQNSPIHGRGVFARRPIHAGQRLLEYKGERIDWPEALRRHPRDPAQPNHTFYFSLGDATVIDGGVQGNSARWINHACAPNCEAQQVGSRVFIDALRDIAPGEELFFDYALELDARYTAKLKRDYACRCGAPNCRGTLLAPKTRKRR
>NZ_CP020046.1|WP_079416673.1|1095655_1096423_+|SPOR-domain-containing-protein
MRTLLLALLLANLVFFAWSQGWMAGAGLGPVTQREPQRLALQIHPEQVHITPLASASATPASAPQPASSAPASAPAEPDPPPSAPAPQDAAADGAPTVCRQIGPFGAMESAALAQAQAALARAGLKAKAHNTPTPDQWMVLLGPFPSQDAMRTVLDQITRQGKVKVFAPVTDRPRYEPGISLGVFSNEAAAQEQLQIVKKQGVQGAKVVQRNTGLNRVTLRLPALTPQQIKALGSVSGQLGGQIVKTCATEAAAP

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Crispr_ID: NZ_CP020046_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_7

1117232-1117359

Orphan

Consensus_repeat	Method
CCCACCCCAACCCTCCCCACCCATGGGGAGGGAGAGAACACGCCTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_7

>merge|NZ_CP020046|7|1117232-1117359|CRISPRCasFinder
CCCACCCCAACCCTCCCCACCCATGGGGAGGGAGAGAACACGCCTCCCCCACAAAGTGGGGAAGGCTGAGAGAGCGATGCCCACCCCAACCCTCCCCACCCATGGGGAGGGAGAGAACACGCCTCCCC

>NZ_CP020046|7|7|1117232-1117359|CRISPRCasFinder
CCCACCCCAACCCTCCCCACCCATGGGGAGGGAGAGAACACGCCTCCCC	CACAAAGTGGGGAAGGCTGAGAGAGCGATG
CCCACCCCAACCCTCCCCACCCATGGGGAGGGAGAGAACACGCCTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079420358.1\|1124967_1126320_-\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238506
NZ_CP020046.1\|WP_079416693.1\|1108395_1109529_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP020046.1\|WP_079416701.1\|1112606_1113863_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|225153
NZ_CP020046.1\|WP_079416720.1\|1123030_1123510_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183009
NZ_CP020046.1\|WP_079416724.1\|1126592_1127384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416714.1\|1119607_1121110_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NZ_CP020046.1\|WP_079416699.1\|1111729_1112617_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP020046.1\|WP_079420356.1\|1113942_1114512_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP020046.1\|WP_079416710.1\|1117544_1118840_+\|rRNA-(guanine-N2)-methyltransferase	unknown	unknown	gnl\|CDD\|236981
NZ_CP020046.1\|WP_079416705.1\|1115754_1116330_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP020046.1\|WP_079416697.1\|1110666_1111701_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|372616
NZ_CP020046.1\|WP_169836754.1\|1115460_1115631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416722.1\|1123574_1124870_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP020046.1\|WP_079416718.1\|1121908_1122652_+\|acetoacetate-decarboxylase	unknown	unknown	gnl\|CDD\|179402
NZ_CP020046.1\|WP_079416708.1\|1116329_1117214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372140
NZ_CP020046.1\|WP_079416703.1\|1114832_1115414_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP020046.1\|WP_179947961.1\|1121120_1121288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079416726.1\|1127471_1128881_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|224128
NZ_CP020046.1\|WP_079416695.1\|1109549_1110698_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP020046.1\|WP_079416712.1\|1119160_1119433_-\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|235091

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079420358.1\|1124967_1126320_-\|chloride-channel-protein	gnl\|CDD\|238506	cd01034, EriC_like, ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	4.38505e-128
NZ_CP020046.1\|WP_079416693.1\|1108395_1109529_+\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.14986e-23
NZ_CP020046.1\|WP_079416701.1\|1112606_1113863_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	2.49882e-18
NZ_CP020046.1\|WP_079416720.1\|1123030_1123510_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.44051e-64
NZ_CP020046.1\|WP_079416714.1\|1119607_1121110_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP020046.1\|WP_079416699.1\|1111729_1112617_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	2.19061e-26
NZ_CP020046.1\|WP_079420356.1\|1113942_1114512_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	8.62663e-31
NZ_CP020046.1\|WP_079416705.1\|1115754_1116330_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.33817e-60
NZ_CP020046.1\|WP_079416697.1\|1110666_1111701_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.12372e-21
NZ_CP020046.1\|WP_079416703.1\|1114832_1115414_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.21492e-43
NZ_CP020046.1\|WP_079416722.1\|1123574_1124870_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.6301e-109
NZ_CP020046.1\|WP_079416718.1\|1121908_1122652_+\|acetoacetate-decarboxylase	gnl\|CDD\|179402	PRK02265, PRK02265, acetoacetate decarboxylase; Provisional.	5.13257e-169
NZ_CP020046.1\|WP_079416708.1\|1116329_1117214_+\|hypothetical-protein	gnl\|CDD\|372140	pfam12483, GIDE, E3 Ubiquitin ligase. This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis.	2.54819e-08
NZ_CP020046.1\|WP_079416710.1\|1117544_1118840_+\|rRNA-(guanine-N2)-methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	1.40111e-122
NZ_CP020046.1\|WP_079416726.1\|1127471_1128881_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
NZ_CP020046.1\|WP_079416695.1\|1109549_1110698_+\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	7.05076e-76
NZ_CP020046.1\|WP_079416712.1\|1119160_1119433_-\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|235091	PRK02958, tatA, Sec-independent protein translocase subunit TatA.	3.41864e-35

>NZ_CP020046.1|WP_079416708.1|1116329_1117214_+|hypothetical-protein
MLSGLSPGGAPGQVLAFALVLGAGGVVQFFRLQRRRRAMEDMPTARIRSASQGYAELIGQALPPDAPLFSPLSRTPCCWYRFKIEKRDRDSNRNWSVEQQGVSTTQFWLDDDTGRCIIDPEGAEVRALTRRTWTGSTAQVIPGTSEVMMTGDNDHRYTEHLILPGQTLYALGWFASLSPLQVSSHAEVRERIAAWKADPQQRRAFDSNGDGALDMAEFEQLRQQAAAAVEAERRERAVQPQTHVLRRPKDKRLFLLTTEPHDDLTRTLRWQAWAWLTVGVLGLAYGGAGLLMLG
>NZ_CP020046.1|WP_079416705.1|1115754_1116330_+|LemA-family-protein
MITSLVVIALLVALLFYGVMIYNNLVNLKHAITQAWANIDVLLKQRHDELPKLVEVCRQSMHFEQETLERVVRARSQVQQAREAGDVRSLGRAEGALRSGLGALFAVAEAYPDLKTNEAFQHLQARISGLEENIADRREFYNAAVNANNVRIDQFPDLIVARLLAFGPAELFKVASGERADVDLKGLFAAS
>NZ_CP020046.1|WP_169836754.1|1115460_1115631_+|hypothetical-protein
MKLSRKRARAQTIKLPATSPRNPLVAAALQRKAGAHRKSNKALRRGQRSGRKSALE
>NZ_CP020046.1|WP_079416703.1|1114832_1115414_+|Uma2-family-endonuclease
MTAVPQPKFSAEDYLAWEVTQTEKHEFVGGEAFAMAGASDAHVTVAGNLFVALRAHLRGTPCRTYIADMKLHMAAADAYFYPDVFVTCSTADALRPQDKAEPVLVAEVLSPTTAAYDRGAKFAAYRSLPSLQEYVLIDPESPGVEVYRRDASNHWVLYPYGPQDAAEFASVGLTLPVAQVFEDVPPPGAAAAA
>NZ_CP020046.1|WP_079420356.1|1113942_1114512_-|Uma2-family-endonuclease
MPPQAAKRTRLSIDDYLAGERDAETRHEYLDGEVYAMSGASRRHALIVTAMTFALTPHARQRRCQLFTNDMKLRLEVAGATIFYYPDLMIARDSEDRASYYLTRPCLVAEVLSPGTERIDRREKLLSYISLPSVQEVLLVAQDQPLLELHRRANGWKVERGDQGSLHLDCLDAELAVEQVYADVDWAQG
>NZ_CP020046.1|WP_079416701.1|1112606_1113863_-|oligosaccharide-flippase-family-protein
MRGPIARATVRTSAVFGLRLLAQAGTLLVVARLLGPHAYGAFAGVAALAVLMGSLSTFGTHLVLLREVSREPRRRAAVLPFALGTTLLCGSALLMLYLLLTLTLFAQADIAFTVLLALGITELLLQPLLNQPSAELQGHGRIATAQMLSTLPLILRLGAALAVGALQPTDPLAAYAWGYLAASALTLLLATRTLQEAWPAWRTWRLPRRADLRDAAGYAALNLTASGPAELDKTLAAALLPLAAAGVYAAGARVIGAITLPVIAMMLATLPRLFREAETDHARSGRLLRWVFASAFGYSVLLAAALWLAAPLFDVLFGARYAGLGDTLRWLTLAVPGMALRITAGSALMALGKPWMRVGFELGGLAVLTLAAFIFTTYAQPHAMPLALACAESIMALTGLIMIIMFQQRTTERMSRAA
>NZ_CP020046.1|WP_079416699.1|1111729_1112617_-|FkbM-family-methyltransferase
MQPEHYLRIRAAANAVAAASHSKLPHTLCRRLFARVKAEVEIGDFNGSQRMRLDLSEHMQRRIFWMGHYSRDVVATLQWLLQPGMHFVDIGANIGEITLTAGKIVGAYGSVTAFEPVDSIAGKLAQHLLWNDLTWCTLERLALSDHQGSAEIFASTGNNGTWDPHDGLASLHNIDQSRAPVQQVRLDTLDHYFLEHPIRALDGIKIDIEGAELECLRGAEATLRSYQPWLIVEVQSQTSAAAGYEQRQILDFLTGLGYQFYKTGNARPHAIAANDLSAIQNVLCLHKMQISKIIE
>NZ_CP020046.1|WP_079416697.1|1110666_1111701_-|class-I-SAM-dependent-methyltransferase
MGWSRGALESIKSCPACGVTIRDEGRTYKRRDDDGKMPDVWTMHYCENCHSIYLNPRPDATSLPAAYEDYLTHVEQNTYEEIYSRTGIFWTLVRGYLRGGFNIDFDSSCKWGYLIIRSFPPARQKLDRFCRNLNLNRLRGFGRLLDVGCGNGAFLAFAEKMGWKAEGVEPDPVAANLCAEKGLDVRCGFIDEMDDRQGVYDVLTMNHVIEHAANLDHIMIKSFALLRPGGLLWIALPNPNGLGLKMFGAAFSALHPPYHLCLYSQRSLRDAMHRAGFDGVRVIRRGFHARVHWRDSLKISKKYSLAIPHAQIRYVVRWISDFLSVFTPRWSEETVIIAYRPINS
>NZ_CP020046.1|WP_079416695.1|1109549_1110698_+|glycosyltransferase
MKILFVLPRMVGGGVERVTLNLATALRQRGAECRLALRRAEGEMLAEAQQVFASVDILTDVSLWQFIPRLTALIDTAQPTHIITAFTDIGLLTWIARRRGKAKVPIIHGIHNTHAFANRRPGMIGLLRYLLNRQLDRLLYPRVDAIVCVSKGIEAEVKACCPSAASYTRTIYNPVATKVQIAHCLQNPRQRERHAGPWRIVGLGRLTEQKGFDVLIKAAGLLPASPPWQIDIYGDGPLRAVLQQSIQRHGLQDRITLHGYTTDPASALDHADVFVLPSRHEGFGLVLVEAMLHGAQVIATDCPQGPREILQSGRIGQLVPVENTRALAEALQGTMRRKFWIDSAELQNRASCFSTEESTEQWANVLNELNHSPKNLLGGRQL
>NZ_CP020046.1|WP_079416693.1|1108395_1109529_+|glycosyltransferase
MRVLFIGKRFYTNRDTLLDHYGRIYQLPRHWAQQGIDTRLWLIDYHSKQRVQQTQGALPIDSTPLRGPAWFAATLSTLASRLRGSERPTHIVASGDAYIGLLGWLLARSIGAHFVFDVYDKYDEFTGYRKPLGWNLFGFLLQHADRCWFASRRLLGQLGNPNRGDALIMNGIDLDHFTAHKMGAARQCFDLPTATPLVGYFGALNRERGLPDLIEAMRIVRSIDSSVELILAGKADAEITFDAPGVHYLGNLDHEQIPWALAAVDVVAVPYRRSPFLDAASSIKFGEIMACRRPLVATRTPNLLDNFPAQAAELDPYLAPPQNPAALADAIVRQLRDQKRVDPPAGMEWAAIASEALSSLAAACENQALNTLPRTRL
>NZ_CP020046.1|WP_079416710.1|1117544_1118840_+|rRNA-(guanine-N2)-methyltransferase
MQSPYSSVYKKRRESGSGNRSGSAAQASNPDLTPQNLGTFDFFLPCPRGLETALADEVKALAAHSPTLRMGAPAPGGLPVQGTLTDAMRLNLHCRLTSRVLLLGGRCGYADAEDIYHLARDLAWEKWFGVTQALRVDVTAERSPLESIKFAALRVKDGICDRFRALTGERPDVDTAHPDVRIHLHLREADALLYLDTSGEPLFKRGWRSEHGAAPLKEHLAAGLLMLSGWTPADVLFDPLCGSGTLVIEAAQMAAHRAPGLDRTFGFEVLQGFDADAWTALREQARQAVRPVAPGQFFAADIDPANVRMTLDNARRAGVEGAIAAQAGDVIAAAPPVDAAALPSGQQAWLISNPPYNERIAPEGVAATDFAPQLAHTLKQRFAGWHVGLLAADLHWDRALRLKPRRRIVLFNGTIECRLMLFDMVAGSARG
>NZ_CP020046.1|WP_079416712.1|1119160_1119433_-|Sec-independent-protein-translocase-subunit-TatA
MGEFSIWHWLIVLLIVIMIFGTKKLKNMGSDLGQAVRGFKDGMKEADAPAEKTAEPDAAPPAAPPQVTASSKSPLGTRAEQAEDIAFKAK
>NZ_CP020046.1|WP_079416714.1|1119607_1121110_-|glycerol-kinase-GlpK
MALIAALDQGTSSSRALIIDEHGRVRASAQREFAQHYPQPGWVEHDPLDIWATQSATLTEALARAGAGLRDLAAIGLTNQRETVVLWERASGRPLANAIVWQDRRTAQVCAQLAADGHAPLLQERTGLLPDAYFSATKLAWLLDHIPGARARAEKGELAAGTIDSWLVWKLSGGAVHLTDVSNASRTLLCNLHTGDWDDTLLALLRVPRAVLPAIVPNCGPLALARLGGVEIPITGMAGDQQAALFGQACLQPGMAKNTYGTGCFALQHTGTQAVRSQQRLLSTVAWKLGADQPLHYALEGGVFIAGAAVQWLRDGLGLVRSAQEAQQLADSVPDSGGVLLVPAFTGLGAPHWDAQARGLLIGITRGTTAAQVARATIDSMAYQSAELFAAMQADVAAQGGEPLCELRVDGGAAVNDALMQFQADLLGVPVVRPVQAESTALGAAYLAGLGVGLWPDAQTLAALWTPERRFDPAMRADEREARMARWRRAVDRARDWADD
>NZ_CP020046.1|WP_179947961.1|1121120_1121288_-|hypothetical-protein
MSRRWIAWLLACSALSGCGVVAAPCRVASAGLKMVPVVGHVAAAPTDVCADVIDP
>NZ_CP020046.1|WP_079416718.1|1121908_1122652_+|acetoacetate-decarboxylase
MKAADVAQSAFSMPLSSPAYPPGPYRFIDREFFVVTYRTDAQALRAMIPEPLEPAGDLVKFEFIRMPDSTGFGAYTESGQVVPVRYKGKPATFQIAMYLDDEAPIAGGREIWGFPKKLAKPQLSVAADTLVGTLDYGPVRIATGTMGYKHRALDTAQVLASLRQPNFLLKIIPHVDCTPRICELVQYDLEDLVVKGAWEGPAALELHAHALAPVSALPVLEVVSGVHILTDLTLGLGRVAHDYLAKP
>NZ_CP020046.1|WP_079416720.1|1123030_1123510_+|Lrp/AsnC-ligand-binding-domain-containing-protein
MSEKIGGIDRIDRRLLNLLQEDGRIANLRLAQLVNLSPTAVLERVKRLTRDGFILGYEGRLNPNLLGAGLMVFVEVQLDRTVPDTFEKFQSAIKVRSEILECHMVAGNFDYLLKVRVADMAAYRTFVANVIANLPGVRETRSFAVIDEVKDTTRLQVEL
>NZ_CP020046.1|WP_079416722.1|1123574_1124870_-|MFS-transporter
MASLTSEATAAAPPSEQVYRRIGWRIIPFLILCYFVAYLDRVNIGFAQLQMKGDLGFSDAVYGLGAGIFFLGYFVFEVPSNLILHRVGARVWIARIMITWGLISAATLFVTTPTQFYVMRFLLGVAEAGFFPGIILYLTYWYPAARRSQMTAWFMSAVPLSGLVGGPVSGWILHHFHGHHGWAGWQWLFVLEGLPAVILGIVTLFYLDNGIKHAKWLSADEKNALQYALDQEAQTKPSHSALEGLAQPRVWLMALIYFSVVIGLYGLSFWLPLLIKSTGVTDPLTIGWLVALPYGVSVVAMILVGRSSDKRHERRWHVAIPALIGAIGLVLSTFWSTDTTLAMVALTLATVGIMVVLPLFWALPNAFLAGTAAAAGIALINALGNLAGFFGPSIIGWVKQTTQSTNGGILVLAGFMVLCAVLVLLTPKTSK
>NZ_CP020046.1|WP_079420358.1|1124967_1126320_-|chloride-channel-protein
MHPRYRPAALWRLTRKELRKSWLNFGVLWVGAVLVGLAAVLFANWANDALNIFLGWIEGRPWLALIITPALSGGAVWMTRRWFNGSEGSGIPQVIAALHGKRDDTRIPRLFGLRILIGKLGLGLMGMLGGLTLGREGPTVHIGASIMYEMRRFYPRVSLRMERMLLLAGSAAGLSGAFNTPLAGILFAIEELTRSFEVRTNGVLITSIVFSGLVSLALAGNYLYFGQITAPDIFPIAFILPVVIAAVLCGLAGAAFNLALLRQARWIPRGVLAWRDRSPLLWGAGLGLLVAVIGIATGGQTWGSGYDQARHLLMNHGEQVSWYYPLVKWLSMVLSYITGLPGGLFSPSLSIGAGFGQWVSQWFGQYPQSALVAICMVGYLAAVTQSPLTSFVIVMEMINGGGLVIPLMATALISSRVANFFTPPLYEALAVQKYYALPPGAAPDAPDVRR
>NZ_CP020046.1|WP_079416724.1|1126592_1127384_+|hypothetical-protein
MRSLHQLTVPEKLLHTGFIFLVCIGLLCAEAYLYVTHAGLDGKTGVTLRDIQISYYGNRDSSKLQTVLPTMFTNAGIPKEQWPQLQKTIDTWVVGGQTKAEYDSQIKPIIDQHCMMCHSVAMSKQLHNPPLASYDDVKAVAKVDTGMSYNAMLMTGMVHLTMLGLIFWVAGWLFLQTRVHSQIKAISVITPFIAMLLDFSGWFLTKQNPDFAWFVLIGGALSCPIAMLEMGVALLDMWIGLPKFLLQRLVTEVPKSVVRTAAA
>NZ_CP020046.1|WP_079416726.1|1127471_1128881_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MRDMTTAPTPSPALSVVVLAAGKGTRMRSDLPKVLQPLAGQPLLGHVLGTVHQLAAERAVVVTGFGAQRVREAFAHRPNLPHLRFALQEPQLGTGHAVQQALPELPDTGVCLVLYGDVPLAPATSLLPLVAEAQAGALALLTVELDDPTGYGRILRDADGAVQGIVEHKDATPAQRAVRECNTGILCAPVAHLRRWLGQLRNDNAQGEYYLTDVVALAVADGVPVRAATVADADDVLGVNDRSQLAHLERVVQRRTARRLLDAGVTLADPARLDVRGALHCGRDVFIDVGCVFEGEVHLADGARVGPYAVLRDVRVGAGTVVHPFCHLDGASIGAGALIGPFARLRPTTALADGVHIGNFVEVKNGTLGQGSKANHLSYVGDATVGARVNIGAGTIVANYDGANKHRTVIEDDAHTGSNSVLVAPITVGAGATVGAGSTVTKAVPAGALTVARARAVTLQGWTRPEKNK

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Crispr_ID: NZ_CP020046_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_8

1216899-1217013

Orphan

Consensus_repeat	Method
GGGGGCAGCGCAGGCGAAGCCGAAGCGTGGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_8

>merge|NZ_CP020046|8|1216899-1217013|CRISPRCasFinder
GGGGGCAGCGCAGGCGAAGCCGAAGCGTGGGGGCCAGCACCTCCGTCGCCGGGCCGCCCCAAGACGGAGGCAGCCCCCTCGGGGGGCAGCGCAGGCGAAGCCGAAGCGTGGGGGC

>NZ_CP020046|8|8|1216899-1217013|CRISPRCasFinder
GGGGGCAGCGCAGGCGAAGCCGAAGCGTGGGGGC	CAGCACCTCCGTCGCCGGGCCGCCCCAAGACGGAGGCAGCCCCCTCG
GGGGGCAGCGCAGGCGAAGCCGAAGCGTGGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079416865.1\|1206055_1206472_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|236361
NZ_CP020046.1\|WP_079416875.1\|1214803_1216048_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|273483
NZ_CP020046.1\|WP_079416893.1\|1227343_1229134_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP020046.1\|WP_079416873.1\|1213517_1214705_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP020046.1\|WP_079416889.1\|1223257_1224436_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP020046.1\|WP_079416887.1\|1221734_1223261_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|234995
NZ_CP020046.1\|WP_079416863.1\|1205779_1206031_+\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|367713
NZ_CP020046.1\|WP_079416895.1\|1229130_1229466_-\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|131264
NZ_CP020046.1\|WP_079416871.1\|1212153_1213080_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|237294
NZ_CP020046.1\|WP_079416878.1\|1216049_1216874_-\|cell-division-protein-FtsQ/DivIB	unknown	unknown	gnl\|CDD\|224505
NZ_CP020046.1\|WP_079420376.1\|1206468_1207338_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NZ_CP020046.1\|WP_079416883.1\|1219394_1220510_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP020046.1\|WP_079416891.1\|1224425_1227347_-\|bifunctional-UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase-MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine-ligase-MurF	unknown	unknown	gnl\|CDD\|237025
NZ_CP020046.1\|WP_079416867.1\|1207433_1208669_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP020046.1\|WP_079416885.1\|1220506_1221742_-\|putative-lipid-II-flippase-FtsW	unknown	unknown	gnl\|CDD\|274232
NZ_CP020046.1\|WP_079416861.1\|1205020_1205773_+\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
NZ_CP020046.1\|WP_079416897.1\|1229476_1230430_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP020046.1\|WP_079420378.1\|1230436_1230865_-\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP020046.1\|WP_079416881.1\|1217979_1219398_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP020046.1\|WP_079416869.1\|1208742_1211532_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079416865.1\|1206055_1206472_-\|NUDIX-domain-containing-protein	gnl\|CDD\|236361	PRK08999, PRK08999, Nudix family hydrolase.	1.00032e-44
NZ_CP020046.1\|WP_079416875.1\|1214803_1216048_-\|cell-division-protein-FtsA	gnl\|CDD\|273483	TIGR01174, Cell_division_protein_FtsA, cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. [Cellular processes, Cell division].	2.75636e-167
NZ_CP020046.1\|WP_079416893.1\|1227343_1229134_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	4.96933e-149
NZ_CP020046.1\|WP_079416873.1\|1213517_1214705_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP020046.1\|WP_079416889.1\|1223257_1224436_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NZ_CP020046.1\|WP_079416887.1\|1221734_1223261_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|234995	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NZ_CP020046.1\|WP_079416863.1\|1205779_1206031_+\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|367713	pfam03884, YacG, DNA gyrase inhibitor YacG. YacG inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. It acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. YacG has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins. The conserved four cysteine motif in this protein (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.	4.21481e-21
NZ_CP020046.1\|WP_079416895.1\|1229130_1229466_-\|cell-division-protein-FtsL	gnl\|CDD\|131264	TIGR02209, Cell_division_protein_FtsL, cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species. [Cellular processes, Cell division].	3.96552e-16
NZ_CP020046.1\|WP_079416871.1\|1212153_1213080_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	gnl\|CDD\|237294	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase.	1.13319e-178
NZ_CP020046.1\|WP_079416878.1\|1216049_1216874_-\|cell-division-protein-FtsQ/DivIB	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	2.85575e-32
NZ_CP020046.1\|WP_079420376.1\|1206468_1207338_-\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	1.62461e-142
NZ_CP020046.1\|WP_079416883.1\|1219394_1220510_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	6.77305e-157
NZ_CP020046.1\|WP_079416891.1\|1224425_1227347_-\|bifunctional-UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase-MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine-ligase-MurF	gnl\|CDD\|237025	PRK11929, PRK11929, bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF.	0
NZ_CP020046.1\|WP_079416867.1\|1207433_1208669_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP020046.1\|WP_079416885.1\|1220506_1221742_-\|putative-lipid-II-flippase-FtsW	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	4.23763e-125
NZ_CP020046.1\|WP_079416861.1\|1205020_1205773_+\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	5.78504e-119
NZ_CP020046.1\|WP_079416897.1\|1229476_1230430_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.33809e-145
NZ_CP020046.1\|WP_079420378.1\|1230436_1230865_-\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	1.38256e-57
NZ_CP020046.1\|WP_079416881.1\|1217979_1219398_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP020046.1\|WP_079416869.1\|1208742_1211532_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0

>NZ_CP020046.1|WP_079416878.1|1216049_1216874_-|cell-division-protein-FtsQ/DivIB
MSRYAPRELPLDVRLMQGTSRALYWLVALGCVFVVAHWMMQRSWWDIRAVRLQGDLQRISPVTVRAEALPQLQGNFLTINLAQAQRVFENLPWVRTAVVQRLWPMQLGVTLQAQQPVALWREPGSAPQLVNAQGQAFTANLGEVQGLGLPLFSGPVGTSAQVLQMSQTLQPLMRAFQQNVVALALGSGGNWSVQTRSGLHIDLGSAPDSTATQTRLKQFMTLMPQLESRYGRAIDSVDLRYPNGFAVHLQGVDLPGMNKTTNKTTTPQPAGRND
>NZ_CP020046.1|WP_079416875.1|1214803_1216048_-|cell-division-protein-FtsA
MAKDYKDLVVALDIGTSKVLVVVAEMLADRDNPAAGFKIVGMGQAPTAGMRRGVVVDIEATVQSIQAALKEAELMADCKITHVITGITGSHIRGQNSHGMVAIKDREVTQADVTRVIETAKAVNIPADQRLLLVEPQEFIIDGQEVKEPVGMSGVRLEVNVHIVTGAQTAAENVIKCVRRCGLEVEQLVLHPLASSHAVLTDDEKELGVAVVDIGAGVTDIAIYTGGAIRHTAIIPVAGELITSDIAMALRTPTRDAEDIKIEHGIAKQVLANPEETLEVPGLGDRGPRMLSRQVLASVIEPRTEEIFALAQQVIRESHFEDVLSSGVVLCGGSAQMPGMVELAEDIFLKPVRVGTPSYSGPLADMVRNPRMATVMGLLAEALHQRQRGARIAQKSSSVKGSLGRLREWFAGNF
>NZ_CP020046.1|WP_079416873.1|1213517_1214705_-|cell-division-protein-FtsZ
MAFEMIENDAHSAFNQGTNIKVIGVGGGGGNAVEHMIASGVRGVEFICANTDAQALKTSSAHQFLQLGKTGLGAGGKPVVGRESADQARGQIRDALEGAHMLFITAGMGGGTGTGAAPVIAKIAREMGILTVAVVTRPFDFEGSKRMSNAEQGLAELEANVDSLIVVLNEKLLEVYGDDISQKEAFGKANDVLKNATGGIAEIINVPGLINADFEDVKSVMGEPGKAMMGTAVASGPDRARLAAEQAVVCPLLDGVDLSGAKGVLVNITADDSLRLGETREAMNAIRAYASPDANIIFGTVNDPTMGDSLRVTVLATGLCGKAEKAAPELTIIRTGTDNMPVMGQGYGMPTGADTHQIPAIWRSGRGAPSAHVNALMQSGMEEMEIPAFLRKQAD
>NZ_CP020046.1|WP_079416871.1|1212153_1213080_-|UDP-3-O-acyl-N-acetylglucosamine-deacetylase
MLAQRTIQSVNRAVGVGLHSSERVELALRPAPPDTGIVFTRTDLSEPVEIPLNPFAVVDTRMATTLGRDNVKIHTVEHLLSACSGLGIDNLYIDVTAEEIPILDGSASSFVYLLQSAGIALQNAPKRFIRVRKPVELRLGQGADQKWARLEPYDGFKLSFDIDFDHPAVDQTAQSTVFDLGRDSYVKDIARARTFGFMRDVETLRERGLALGGSMENAIVMDEYRVLNQEGLRFDDEFVKHKTLDAIGDLYVAGKALIGAYSAFRSGHAVNNLLLRELFADESSYEIVSFDDANRAPAGFRAIPTFAF
>NZ_CP020046.1|WP_079416869.1|1208742_1211532_-|preprotein-translocase-subunit-SecA
MPVKFLTSLFGSRNERLLRQYRRVVERINALEPQFEKLSDDELRAKTAEFRQQVAGGRSLDDLLPEAFAVVREGGKRALKMRHFDVQMIGGMALHHGKIGEMRTGEGKTLVGTLPVYLNALSGKGVHVVTVNDYLARRDAEWMSRLYNFLGLTVGINLPNMTKPEKQAAYASDVTYGTNNEYGFDYLRDNMVYEPAERVQRGLNYALIDEVDSILIDEARTPLIISGQADDNTELYKKINVIVPRLVRQIGEEDPITGKGVEKPGDFTVDEKAHQVFLTEAGHEKAEAILTELELIPQGTTLYDAANIALMHHVYAALRAHHLYHRDQHYVVQNGEVIIVDEFTGRIMAGRRWSDGLHQAVEAKEGVDIQSENQTLASITFQNYFRMYAKLGGMTGTADTEAFEFQEIYKLETVVIPTNKPIRRKDAQDKVYKTAHERDLAVVEDIRDCFERGQPVLVGTTSIESSEKLSALLHEKKLSHQVLNAKQHAREAEIVAQAGRPGMITIATNMAGRGTDIVLGGNVEKQCEILEADPNLSDEEKAEKVHTVKSEWQSLHDKVIAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSTRFYLSLDDALMRIFAGDRVKAIMERLKMPEGEAIEAGMVTRSIESAQRKVEARNFDIRKQLLEYDDVSNEQRKIIYQQRNELLDSTEVGEQITSLRQGAFADLVRAYVPEQSMEEQWDIPGLETVLRDDWQIELPLKAWLESDENMTDEDVLERVLEAADTAYATKVDLVGRDNFAQFERVVLLQTLDQQWREHLSSLDHLRQGIHLRGYAQKQPKQEYKREAFELFGLMLDSVKSEVTRVLMTVQVQSPEQAEEAAEIIEEKAQRIQVNFQHADAGSGISVLDSTEAALAGMAATASAALATPQENPYPKVGRNDPCPCGSGKKYKHCHGKLS
>NZ_CP020046.1|WP_079416867.1|1207433_1208669_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MAVNLQAPDPTQLLAIEGVLLGVSEAQIRKPGRKDLTVVQIAPGASVAGVFTQNRFCAAPVQVCREHLQSTGGHDVRALVINTGCANAGTGAQGLADARQTCVELASLLDVRPEQVLPFSTGVILELLPMQRLLAGLPGAMAAARSEGWADAATAIMTTDTLPKAASLRVVIDGVTVTLSGISKGAGMIRPNMATMLGFIATDCAVSPEVLQQLTRAAADDSFNSITIDGDTSTNDSLIVIATGKTSLPPITRADSAQAKALQTALTALAQRLAQAIVRDGEGATKFISVRVEGALSRDEARQVAYAVAHSPLVKTAFFASDPNLGRILAAVGYAGVHDLDVDGVDLYLDDVHVATRGGRHPDYREADGQRVMQQAEITVRIVLGRGAAAATVWTCDLSHDYVSINADYRS
>NZ_CP020046.1|WP_079420376.1|1206468_1207338_-|ATP-binding-protein
MSGPLLALFQRAHGLLDRLETLLPAPMSEPDWHASVAFRWVSKGGRKQLVPVHKLSPIAYDDLIGIEDQRRKVERNTRQFVQGKPANNVLITGSRGTGKSSLVKASLNKFARQGLRLIEVDKADLVDLPELTDLLAARPERFIVFSDDLSFEEGEPGYKALKSVLDGSVSATADNVLIYATSNRRHLMPEYLQENLSYKHLENGEIHPGEVVEEKISLSERFGLWVSFYPYSQDDYLRIAAHWLRAFGVTDRQMDKALQESLVWALERGSRSGRVAWQFARDWAGRGGK
>NZ_CP020046.1|WP_079416865.1|1206055_1206472_-|NUDIX-domain-containing-protein
MTDRQKTQRQPVAVAVGLMMREDGAFLMASRPQGKPYAGYWEFPGGKLEAGESLRDALAREFEEELGVRVREAQFWRSLRVDYPHALVDLQFCRITAWEGEPQGREGQQLSWQTLPVTLSPVLPGALPVLEWLAEDPG
>NZ_CP020046.1|WP_079416863.1|1205779_1206031_+|DNA-gyrase-inhibitor-YacG
MASPSRTPSAATQRKVPCPHCGTPTVYSLDNPWRPFCSERCKSLDFGAWASESYRVQAKPDAADIEAMEQDLERRAQSPGQRH
>NZ_CP020046.1|WP_079416861.1|1205020_1205773_+|cell-division-protein-ZapD
MILYEYPLHERVRTLLRLEHLFRRVDVLQQSALPEHHHFALITLFEIMDVAARQDLKSEILKELERQRQTFIAYRGNPAVAESALDAILGELDQAFQSLSQQQGRVGQSLQDNEWLMAIRSRANIPGGTCEFDLPAYYAWQHLPQQQRQSDLARWLQCFAPLASSVELLLRLLRDAGSTRKIQAVHGSYQQQLAGKTYQLLRLRIDGALGVVPEITGHRLMVSVRFMQPDAEWHMTPSADEVPFDMTLCP
>NZ_CP020046.1|WP_079416881.1|1217979_1219398_-|UDP-N-acetylmuramate--L-alanine-ligase
MKHAIRTIHFVGIGGAGMSGIAEVLHNLGYGVSGSDLNESATVRRLRDLGLRVAIGHDAAQVQDADAVVISTAVRADNPEVLAARARHIPVVPRAVMLAELMRLKRGIAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNSAGVHAKLGQGEYIVVEADESDASFLNLLPVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPFYGAAVLCVDDAAVRGIMPFISKPITSYGFAEDAQVRAIDVRADGAQMRFTVLRRNGVELPPLAMTLNLPGRHNVQNALAAIAIATELNVDDAAIQRALAGFTGVGRRFQRYGEVRAAHGGPFTLIDDYGHHPAEMAATLAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVKVLGDADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAIGDMPQAILDMTRDGDVVICMGAGSIGAVAAQVVALAAGTEGDAT
>NZ_CP020046.1|WP_079416883.1|1219394_1220510_-|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MSQTAPVAVIMAGGTGGHIFPGMAVGEGLRAAGWTVYWMGAPTGMEAQLVPRHGFDMLWVRFGGLRGKGLLTKLLLPLNLLRAFWQAWRALRRVGADVVVSMGGYIAFPGGLMSVWAGARLVVHEQNAVAGLANKVLARLADRSYSAFPEALPGAAWVGNPVRAEICALPAPEQRYAGRSGPLQVLVVGGSLGAQALNTLVPQALALLSEQTRPQVRHQSGAKQLPALQQAYAQAGVQADCVAFIDDMAAAYAQADLVICRAGASTVTEVACAGVAALFVPFPHAVDDHQTVNAQFLAGRDAALLIQQRDLSAQRLAELLQSLDRARLLQLAQAARGLAQPDAVQAVVAGCIALLPGGATRQGQGRLGQGR
>NZ_CP020046.1|WP_079416885.1|1220506_1221742_-|putative-lipid-II-flippase-FtsW
MLDRMLPFLGRKRNKASADLPVRVGHMAPRNSRMLEYDQNLVWVTLLLLAYGLVMVYSATISFHDSPRYAQWSPYHYFMRDLFSIAAALLASWIVVQIPMAELQKWSMRFFFLSLIGLVLVLLPHIGKDVNGSKRWVVLPGGLNFQPSELVKLTALIYTADFMSRKQEVKQSFFKTFLPMMAVMMIVGVLLLAEPDMGAFLVIASITLAILFLGGANGKLFALSSVAVIGAFVLMIVLSPWRRDRIFAYLNPWAESNALGSAYQLSHALIAMGRGEWFGVGLGGSIEKLHYLPEAHTDFLLAIIGEELGLVGVGVVIFAFYWIVRRAFDIGRQALVLDRMYSALVAQGIGVWIGGQAFINIGVNLGLLPTKGLTLPLMSYGGSALLLNCMAIAVLLRVDFENRVLMRGGHV
>NZ_CP020046.1|WP_079416887.1|1221734_1223261_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MNLSSLSVLVLGLGESGLAMARWCSAQGARVRVADSRSEPPGLAVLQRDLPSVPVHGGSLDVALLDGVQLVLRSPGIAPHATAFSALVQAANERGVPIAGELHLFQWALDALRAERGYAPKVVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNISPSMLDVLQASLQAGDLPDAWVLELSSFQLHGMETFAADAATVLNLTQDHLDWHGDMAAYAADKANIFGGEAAAGVTVLNRDDPAVLAMRRPGRRLRRFGLSAPQQPGDWGVTREGGLDWLVRALPDVEAERALASPPVARRGKSAVQPATELSLQRLMPTEALRIQGGHNIANALAALALGDAAGAPLAPMLHALRDYRGEPHRMQTVAVIDDVRWIDDSKGTNVGATVAALAGMQSPVVLIAGGDGKGQDFSPLRAQAARLRAAVLIGRDAQAIADQLGDLAPVELTQSLEQAVQRAATLAQTGDVALLSPACASLDMFRNYAHRAEVFVAAVRALAESRGQVWNEGADHA
>NZ_CP020046.1|WP_079416889.1|1223257_1224436_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLHSLAMWLMDLSPDLRFFRVFNYITFRAVMSTLTALFIGLLAGPAVIRKLTAMKVGQAVRQDGPQTHLIKTGTPTMGGVLILLSIGVSTLLWMDLSNRFVWLVLLVTLGFGAIGWADDYRKVVYRDPNGMRSRDKYFWQTLIGVAAAFYLAFAVSGKSNAAVWHLFVEWLRSGMTMPLPPVSDLIVPFFKSVSYPLGVTGFIVLSYLVIVGSSNAVNLTDGADGLAIMPVVMVGSSLGVFAYVVGNAVYSKYLLFPFIPGTGELLIFVGAMVGAGLAFLWFNAYPAQVFMGDVGALALGGALGTIAVIVRQEIVLAVMGGVFVAETVSVMIQVTYFKYTKKKYGVGRRIFKMAPLHHHFEQLGVKESQVVVRFWIVTMILCLVGLASLKLR
>NZ_CP020046.1|WP_079416891.1|1224425_1227347_-|bifunctional-UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase-MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine-ligase-MurF
MKTVDAVLQALRDLRVGPRAPWSTDSRSLRPGEVFVAWPGAARDPRQFAMQALAAGAAAVLVEAEGAQHFGFSDRRILAVDGLKALAGPLAAAWYDHPSRQVKLLAVTGTNGKTSCALWTAQALNAAGRRCGVIGTLGAGWPDALRSTGFTTPDPVRLQALLAILREQGAEWCAIEASSIGLEEHRLAGCELHAAAFTNLTQDHLDYHGDMASYARAKQALFAWPGLRHAVLDIDDPFGASTLLEDCRSRGLAVQTSALSAPADWRAENLEQNLAGQRFTLVHRHARHPLDLPVLGAFNLRNLLVVAALLQTTGMDAAEIADALRTVRAVPGRMQMLGGHGAPLAVIDYAHTPDALDKALQALRPVTAARQGRLWCVFGAGGDRDARKRPLMAQAAQRHADRVVLTSDNPRSEAPEAILQDLLAGVTHEVATPFSTVEDRALAIAQTLAHAAVDDVVLIAGKGHENTQEIAGHKQAFSDAFHARMALAARGAGLCTLGEARDWIGPGAQLIGEAGVAPVAVETDSRRLTPGALFVALRGERFDAHEFLPQARAAGASALLAERGIAAAGLPGIEVADSLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWHGDDRRLATRGNFNNDVGVPLTLLRLRPQHQAAVVELGMNHPGEIAWLARLAEPTVAVVNNAQREHQEFMQSVEAVARENGAVLAALPQDGVAVFPADDAQAAIWAALSAGRPSLRFVLREGETSAPEAEVSGQAFYREGQLRLQLHTPAGHAEVGLALLGRHNARNALAATAAALAAGAPLEAICRGLESFSPVAGRLVPHRLKRADGRALLLIDDSYNANPDSVRAAIDVLAELPGRSLLLLGDMGEVGDQGPAFHAEVGAYAAQRGMAALWTCGEMTAHTQAAAQAAGLREARHEPDVTGFALQSPDLDGFDTVLVKGSRFMRMERAVQDIAALATNGNDARDQEVPHAA
>NZ_CP020046.1|WP_079416893.1|1227343_1229134_-|penicillin-binding-protein-2
MKNPALRPHMPAASYDKSPLLNVKLPPGRAWLVKGLLFAAFAALALRAFWVQVWTTQFYQNQGELRFVRTIELPAMRGRILDRNGNILASSIPAKTIWADPTQVESDNGKVQQLARLLGLNAADLKRRLDSDKQFVYLKRQVDIDIAKQVKALGIKGIYESPSYKRYYPEGSAAAQLIGFSNIEGQGQDGMELALQSRLAGHPGVRKVVKDRLGNVIEDVSGGVPPVDGQDVRLSIDSKIQYLTYQALKQSVVDNKAKNGSAVVIDAKTGEILAMANYPSFDPNTRRRMTESDIRNYAVTDAFEPGSVLKPITLSAALQAGLITPTTVFHTAPGCQQFFGANICDDNNNGDIELPQVIQYSSNVATSQVVSKMPAQVQWNMYTAVGFGQRPQIEFPGATSGLMRPMKRWRPIDRITMGFGYGLGVSTLQLAHAYLIFADRGRIFPVTLFKHDEAPEGVQVVSPTVAREMRGMLALVTQPGGTAPAAAVPGYSTGGKTGTAWIAKDGRYDKKLFRAQFVGLAPINHPVLVMAVSVDQPSAGKHFGGQVSAPVFGAVVPQALRILGVQPDLPVKPDLVPAQTAQALQLPAGRLVKGGA
>NZ_CP020046.1|WP_079416895.1|1229130_1229466_-|cell-division-protein-FtsL
MTRINLVLLFVVVLCAMSVVRAQYQGRRTFAALDVAQQRAEQLQMDKDRLQVEYRAMSAPGRIEQIARTQLDMRPITAARTVFVHEGQSTLTPLPAVPQSQPRSAGKGAHR
>NZ_CP020046.1|WP_079416897.1|1229476_1230430_-|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MRQHAPTPSAETAHRTVLLHEAVDQLITDPSGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQAIEAAAQIHDARFVIAHAPFSEFARVLRDQGVSQADGLLFDLGVSSPQLDQPERGFSFRADGPLDMRMDTSSGPTVAEYLASASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAPLARSGELAALVAATVKSREPGQDPATRTFQALRIHVNAELAQIEAALSQVLDCLKPGGRLAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGLSAEFKPDLSEVARLRPTAAEVSGNARSRSAMLRVAQRV
>NZ_CP020046.1|WP_079420378.1|1230436_1230865_-|division/cell-wall-cluster-transcriptional-repressor-MraZ
MFIGISALNLDGKGRMTVPARHRDVLMARSQGRLTLTKSPDGCLMLFSDDEWVGFRDKVMQLPMAAQGWRRIYLGHATETEMDATGRVLISPELRQAAGLEREVDLIGMGRHFEIWDRAKHQAQEAAVIEAGMPDAVRDIVL

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Crispr_ID: NZ_CP020046_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_9

1429195-1429288

Orphan

Consensus_repeat	Method
GTGGGGGAGGAGAAAACAGCGCTGCGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_9

>merge|NZ_CP020046|9|1429195-1429288|CRISPRCasFinder
GTGGGGGAGGAGAAAACAGCGCTGCGCGCGATCGGCGCAAGCCCCTCCCAACCTCCCCAGCGTTGTGGGGGAGGAGAAAACAGCGCTGCGCGCG

>NZ_CP020046|9|9|1429195-1429288|CRISPRCasFinder
GTGGGGGAGGAGAAAACAGCGCTGCGCGCG	ATCGGCGCAAGCCCCTCCCAACCTCCCCAGCGTT
GTGGGGGAGGAGAAAACAGCGCTGCGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079417251.1\|1426315_1426816_+\|dihydroneopterin-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236516
NZ_CP020046.1\|WP_079417245.1\|1421901_1422996_+\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP020046.1\|WP_079417263.1\|1433577_1434537_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP020046.1\|WP_079417265.1\|1434553_1436215_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP020046.1\|WP_079417247.1\|1423032_1425267_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP020046.1\|WP_079417255.1\|1427751_1429098_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NZ_CP020046.1\|WP_079417269.1\|1437742_1438762_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP020046.1\|WP_079417237.1\|1418214_1418754_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP020046.1\|WP_154048528.1\|1419750_1420521_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270237
NZ_CP020046.1\|WP_079417239.1\|1418750_1419611_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227949
NZ_CP020046.1\|WP_079417273.1\|1439502_1440609_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP020046.1\|WP_079417259.1\|1431926_1433081_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP020046.1\|WP_079417243.1\|1420601_1421894_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|378081
NZ_CP020046.1\|WP_079417249.1\|1425485_1426145_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NZ_CP020046.1\|WP_154048442.1\|1430883_1431942_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP020046.1\|WP_079417261.1\|1433428_1433617_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079417253.1\|1426909_1427749_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP020046.1\|WP_079417267.1\|1436534_1437428_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179379
NZ_CP020046.1\|WP_079417257.1\|1429432_1430674_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP020046.1\|WP_079417271.1\|1438942_1439368_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079417251.1\|1426315_1426816_+\|dihydroneopterin-triphosphate-diphosphatase	gnl\|CDD\|236516	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional.	1.23539e-76
NZ_CP020046.1\|WP_079417245.1\|1421901_1422996_+\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP020046.1\|WP_079417263.1\|1433577_1434537_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	6.63093e-150
NZ_CP020046.1\|WP_079417247.1\|1423032_1425267_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	9.61328e-28
NZ_CP020046.1\|WP_079417255.1\|1427751_1429098_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	1.69205e-92
NZ_CP020046.1\|WP_079417269.1\|1437742_1438762_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.59936e-144
NZ_CP020046.1\|WP_079417237.1\|1418214_1418754_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	5.18922e-33
NZ_CP020046.1\|WP_154048528.1\|1419750_1420521_+\|extracellular-solute-binding-protein	gnl\|CDD\|270237	cd13519, PBP2_PEB3_AcfC, Ligand-binding domain of a glycoprotein adhesion and an accessory colonization factor, a member of the type 2 periplasmic binding fold superfamily. PEB3 is a glycoprotein adhesion from Campylobacter jejuni whose structure suggests a functional role in transport, and resembles PEB1a, an Asp/Glu transporter and an adhesin. The overall structure of PEB3 is a dimer and is similar to that of other type 2 periplasmic transport proteins such as the molybdate/tungstate, sulfate, and ferric iron transporters. PEB3 has high sequence identity to Paa, an Escherichia coli adhesin, and to AcfC, an accessory colonization factor from Vibrio cholera.	5.00472e-127
NZ_CP020046.1\|WP_079417239.1\|1418750_1419611_+\|anti-sigma-factor	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	6.38955e-25
NZ_CP020046.1\|WP_079417273.1\|1439502_1440609_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	6.32411e-53
NZ_CP020046.1\|WP_079417259.1\|1431926_1433081_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.97793e-36
NZ_CP020046.1\|WP_079417243.1\|1420601_1421894_+\|glutamate--cysteine-ligase	gnl\|CDD\|378081	pfam08886, GshA, Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, EC:6.3.2.2, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase. The structure of this family has been solved, and is similar to that of human glutathione synthetase and very different to gamma-glutamylcysteine synthetase from Escherichia coli.	0
NZ_CP020046.1\|WP_079417249.1\|1425485_1426145_+\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	6.76998e-113
NZ_CP020046.1\|WP_154048442.1\|1430883_1431942_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	6.92445e-50
NZ_CP020046.1\|WP_079417265.1\|1434553_1436215_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP020046.1\|WP_079417253.1\|1426909_1427749_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	2.03803e-41
NZ_CP020046.1\|WP_079417267.1\|1436534_1437428_-\|NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	4.14035e-150
NZ_CP020046.1\|WP_079417257.1\|1429432_1430674_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.1354e-57
NZ_CP020046.1\|WP_079417271.1\|1438942_1439368_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.4399e-21

>NZ_CP020046.1|WP_079417255.1|1427751_1429098_+|cardiolipin-synthase-ClsB
MRPDPPSAPDDIPLNWVHGAAPRLLPFGSALFPAMHRAIEQARESIWLQTYIFHTDEASMGIAGALCDAARRGVQVRVLVDGLGSGRSIDTLSGRFAEAGVEFMVFRPWRLWTDVVQRGRWRRLHRKLCVVDAQIAFIGGINLIDDRFDLHHGWSAEPRLDYAVQYHGHLARQTQWVMQRLWLRTVLTGSLQRRLRKMPGPGVFDTSPNRRAYWQELLDWGGPMPEVQEDGSPLRPEAPQPAKAAAPAPETEPGAAASLATLVVRDNFSRRRAIERSYIRAIHRARERVLIVSPYFYPGREFRQALKNAAARGVRVDLLLQGRIDYRMAAWAARALYGEMLRAGVHIFEYTPAYLHAKVAVVDEDWATVGSSNIDPLSLLVNLEANLAVRDRAFARELGAHVEHQLARSLPINTPDRLRTRAPWWLSPFVAVAARAFVALAGGVRKEY
>NZ_CP020046.1|WP_079417253.1|1426909_1427749_+|endonuclease/exonuclease/phosphatase-family-protein
MELRVASYNIHKGVLGHGPAKRASILELHTALQGLEPDLVFLQEVQFLHQRHANRLSGWPALPQHDFLGQALGMHAAYRTNACTRHGEHGNALLSRYPIIDIDHCDVSDHRFEQRGLLHVQVALPRGGPLHCIVVHFGLFAASRQRQTDRLLDYIAARVPAQATLIVAGDFNDWHGRIGPQLQQQRLIDVSEPPLKTNGKTSWRNRVRTYPARLPLMPLDRIYARGLTASEIGLGWGRAWARLSDHAPLLAALRCDLPDCPEAPGPGLAAQGSKTDIAV
>NZ_CP020046.1|WP_079417251.1|1426315_1426816_+|dihydroneopterin-triphosphate-diphosphatase
MDASTLSPPLSDAGRKIPVSVLVVIHTPALEVLLIERAQQPGFWQSVTGSIDAPGESLAATARREVAEETGIHTGTAALPSGALRDWHLANVYEIYPLWRHRYPAGTWKNTEHVFSLEVPAGTAVTLAAREHRAQVWLPWQEAARRCFSASNADAIRQLPHRLMPR
>NZ_CP020046.1|WP_079417249.1|1425485_1426145_+|peroxiredoxin
MEQTTEVFGLPRLNEPAPNFVAKTTHGDRTLADYKGKWLILFSHPADFTPVCTTEFMGFAREAETFKSMNCELLGLSIDSIFAHLAWVRSIKQHFGVDIPFPIIEDLKMDVARAYGMIHPGAADTQAVRATFFIDPNGILRAMVYYPMSNGRSINEFVRLLQALQTSDKHGVATPEAWCPGDKVIVPPPKTSAAAEERVSKGASMGMEVTDWYFSKKTL
>NZ_CP020046.1|WP_079417247.1|1423032_1425267_+|histidine-kinase
MSLPQTRSARTLMAALLLALAGVTSALYLALHQPWLGLTLSPRFDPYSPGILVRRVDPDGPAAAINPGSRLQSIAAGGQRVMLQASDLVEEPDFFETYDQVESFFRRQTRIAALQAQPLVLSWRDPAGQIVEAPITPQPDRPLSSLPWVFWFQLICGGVALLVGAWVYALKPQSWPGRLLALSGLLFLPNTYSAAIYSTRELAIPASLFETLSAINHLGGLGFGGALAALFMVYPARLAPPKWLWPVPFVIVGWWAADVLRLTPDVSWGVRIPLLIEILLAVALAVVQWRRSAMRASDRAALRWFMLSAMLGTFTFVVFTFGSRMFGVFPPMQQGYAFGFFLAMYLGLALGVGRYHLFDLDRWAYRLLLWVLGLGLIIVLDMLLVLLLNWRHETSLLLTLLLAGLLYLPLRQWLWTRMMQGELPPVDRLLPEIISVAFTAQSLERERRWLGLLDRLYQPLHNLPLATESAEAASGLAQDGMELRVASAGGIGARCLQGRSAGQRLFTVTDAELAASLVSLFNQAASGRDALETGVQQERDRIASDLHDDIGAKLLTLRHLVHGEREQAMLMTTIDQLRAIVRGLQQHAQPWEDFAADMRSETAQRLAAAGMALDWPPPLIGGLSAALPHPDAAATLPQDTAQQYHLRALLQEAVSNAIRHARASRVSVRLSLLDGDRLRLDVIDDGIGIDPQHAASGHGLSSMQIRARALGGQIQWRQPGDGATPVFSLGTHVELVFPLHLAIR
>NZ_CP020046.1|WP_079417245.1|1421901_1422996_+|glutathione-synthase
MQLLFIADPITSFKIYKDTTFAMMREAQARGHVLWVCEAADLHWRGGSPTPALPASGEGVVSPPPPRGGGWEGETAATTLAAGAAPVTAVCRRIELTGAASGHDWYRVLDQRPLALREVDAVLMRKDPPFDSEYFYATHLLQQAEREGAAVFNSPRALRDHPEKLAILEFPQFITPTLVSRRAAEIKAFYGEHGDVILKPLDGMGGTGIFRLRQQADGSPDPNLNVVIETLTAFGATTVMAQRFVPAIAHGDKRVLIIDGEPVPYCLARIPQGGETRGNLAAGGLGVAQPLSETDWTIARALGPVLAARGLLLVGIDIIGDKLTEINVTSPTCFQEITQQSGCDVAARFVSALESAVDRAVGRH
>NZ_CP020046.1|WP_079417243.1|1420601_1421894_+|glutamate--cysteine-ligase
MIPHLITSSGDPVLELEQRILEAQPAIERWFRLEWMEHTPPFYSSVDLRNAGFKLAPVDTNLFPGGFNNLSPEMMPLAVQAAMAAIEKICPEAKNLLVIPENHTRNTFYLENVHTLMRIFRQAGLNVRLGSLDESLADPMHLKLPSGGELVVEPLIRNKLRLGLKDFDPCTILLNNDLSGGIPPILQGLHEQYLLPPLHAGWAVRRKSHHFHAYDDVAKKFAKLIGVDPWMLNPYFTQCGKINFQERHGEDCLAEAVDSVLTKVRKKYKEYGIQEKPFVIVKADAGTYGMGVMTVRDPSEVKDLNRKTRNKMSVVKEGLEVSEVLVQEGVPSVERLQEAVCEPVVYMMDRYVVGGFYRVHADRGPDENLNAPGMHFVPLAFEEQFNVTHPEAAPGTNGPNRFYMYGVIARLAMVAASYELERTDPEVELG
>NZ_CP020046.1|WP_154048528.1|1419750_1420521_+|extracellular-solute-binding-protein
MRTSLLGAGLLLASTSPLALADTPPTLKVYGPGGPAPAMHEAAAAFEKATGIKVEVTAGPTPKWIDAARANADLIFSGSETMMSDFVTAMNGQLDSADVIPLYLRPLSILVRPGNPKHITGFKDLLKPGIKVLVVNGAGQNGVWEDAAGRLGDIRTVRALRKNIVAYPGNSALARQAWIDRPDIDAWLIWNIWQVSNPKLAEQVAVEEPYLIYRDTGIAPTARGKQQPASQQFIAFLQSPQGAAIFQRWGWMTHGA
>NZ_CP020046.1|WP_079417239.1|1418750_1419611_+|anti-sigma-factor
MNPQRPDRDILMAYADGQLDDVRRAEVDRYLEHEARLAQTGEPPPPGAHNPVRAEIAALQAQNLALREALAPLLDEPVPARLLQPLAPPARPWVRAAAVALWIGVGAVAGSLITRESQQDGAVVAAQNEGMQHFVHQAELAYAVYTPDARRPVEVREGSDLTTWLSRRLQRPIVAPDALPGGLVLMGGRLLPGMPGKPAAQLMYQDAQGHRVTVYLRGMAKPTAETSFRIVPGKQASTFYWVDRQWGYALTGDLPRAQLLDAARALYQRYTADDPAPPGPTAAPQA
>NZ_CP020046.1|WP_079417237.1|1418214_1418754_+|RNA-polymerase-sigma-factor
MADRHQLLTEQIPHLRRYARVLHAGRMADADDLVQDTLERAVNKWGLWRGVGSVRPWLFSIMHNLFVDQCAVRQAQATQALDDLPDGALPAQAATQELRLEALELLAALQRLSVPLREVLLLVAVEGLSYAETAKALSVPTGTVMSRLSRARSQLWQLTHGEGAQRPALRVIDGQRSVG
>NZ_CP020046.1|WP_079417257.1|1429432_1430674_-|GGDEF-domain-containing-protein
MAETAGACPPGAEWIELLPACVVMLVGDVVRYANPAALRLLQARQPSDLIGRTLETFIHPLDLHRSLARLRHAESGGTNPVTEIRAYTCDGRPLMLAMSSTTLPIEGHTAVLSTFLDMTERAAMEQQLRQTDEDFQRMMNTMQDVFYRTDAQGITRYVCPAVKNVLGYTAEEIIGLPAAAFYPDLSERDALVAEIRKHGAVHDFPGRMRRKDGVIIDISISTQALRDEQGQYAGVEGIWRDISERKALERRLEHLATCDSLTGIHNRRSVLAILDQLLQRKAPLSVLLLDLDHFKRVNDGFGHAAGDGVLCRFAQIINQEKRSRDFFGRLGGEEFLLILDGADEAEALQIAERLRLAVSAQAIALPEGATVALTVSIGMTQLRPGDLRTADVLVRADRALYRAKASGRNQVCG
>NZ_CP020046.1|WP_154048442.1|1430883_1431942_+|sulfurtransferase
MPCMNTPPPTPFPSTSRTARRSGWSRLCRVCALGWLLAAWALQQGVSAASVHPAGPQAFGPLISASALAARRDQVRIIDLRDAAGEPDVAHIPGALPAPYADWRGPASNPGQLRPLPEFTALVRRLGLTAETPAVLVATGDDPSDFGAPARVYWTLKWLGLRHLAILNGGMTAWQAAGLPITRKPTPPAAPSAFTPQLDDALLATRSDVAQDLTRPGTLLLDARPRAFYLGREKAPAARRPGTLPGALDFDNLRWFEPGSGALPDTATLERIAQGLPKPLEAAPTDGVVSFCNTGHWAATNWFVLSQVLRRPHVALYPGSMVDWSRTDAPMAHVPTRLQQLWQQMGLTWQAL
>NZ_CP020046.1|WP_079417259.1|1431926_1433081_+|YeeE/YedE-family-protein
MASPLNPAIRTAVAQTSEPSRSRLPRSLLVACGLAGFAAITWLVGWRQGLLWLIGLGYGVLLAAAAFGFTTGWRVWITRRDPKGLWAQFVGIAVAMIISVPLLAAQPTLQGADGPLSISLLVGAFVFGAAMQVADGCGSGTLYKAGLGHPVSLAVLPAFVFGSFLGAAQLPAWLSLGALPPVNLVHRLGATQTLIIQLAALALLAALLWRFRGSQPSRWRGSAVWWAAIGLGLLATANLAVAGQPWGIVYGLGLWGAKIVQALGIDLSGNAFWGLPAQQAQLHTTVLADNTSVTDLGLLLGALIAARWRGKASPAVTLPARQWLASIIAGLLLGYSSRLAFGCNVGAYFSGIATGSLHGWVWFACAFAGSLIGVRLRHRLGMQD
>NZ_CP020046.1|WP_079417261.1|1433428_1433617_+|hypothetical-protein
MKRRLPWLMALFWAAVVMLLVLDWRVSAPHDRFAEPPPLALGNGPAADAGHCSLAPVAPSSR
>NZ_CP020046.1|WP_079417263.1|1433577_1434537_-|RNase-adapter-RapZ
MNPSEPSAAAPSADSRSTHQLVLISGLSGSGKSVALTALEDSGYYCVDNLPPQLITPLVEQTRASGQKRVAVAVDARSAESLADVPALLKNLRACCEVHAIYLDCATDTLVQRFSETRRRHPLTSRATAHQSGHAAAARGEGYANALIESIELERELLHPVAEIGLHIDTSQMKSAQLREWIKQVVRVQASQMVVMFESFAFKRGVPLDADYVFDVRMLPNPHYDPVLRPLTGRDVPVAEFLLRQPEVLQMQADITGFLQRWLPRLAADHRSYVGVAIGCTGGQHRSVYLSEQLSRAFASQYTVLLRHRELGATGASEQ
>NZ_CP020046.1|WP_079417265.1|1434553_1436215_-|DNA-repair-protein-RecN
MLLHLHLRDFVIVPELDIDLAAGFTVLTGETGAGKSILIDALKLALGERADSSVVRAGALRAEISAEFSLTPPLAAWLEAQGFAAEADTLLLRRVIDAQGKSRGFLNGSPATAAQLKAAGEWLVDIHGQHAYQGLVRREVVTQLLDGYAGAQDEARAVAQAWAQWRDAHAALQQARRDAGALDEERERLQWQCEELDRLQPQFGDWEALEAEHKRLAHVSSLLEDFAAAAGALDGEDQGVLPLLAQAQQALERALQVDAGLQPLVQQIEAAQTSLSDLSHELRRLAERTEADPQRLAELDVRLSGWMSLARKHRVTAAALPQTHQTLRDKLQQLNLSADLPALESAEQQALAALQKVAAKLSARRRKAAQQLAKAVQAAMQELGMPGGRFDVALVPLDAVGARGAEAVELQVAAHPGAELRALGKVASGGELSRIALAVAVTTSALQDTDTLIFDEVDAGIGGAVAQTVGRLLRRLGGDRQVLAVTHLAQVAACAQQHFAVRKHSSGQQTASLLDALAPAQRPGEIARMLGGNAQSDAALEHARELLAACDAT
>NZ_CP020046.1|WP_079417267.1|1436534_1437428_-|NAD-kinase
MLRTVFQQVLLIGKYQAPQAQRKLGEIAARLSRAGVEVWVGELTAQHTELPYPVLRSSELAERTAQGGWVAVVLGGDGTMLGAARRLAPLNVPLVGINAGRLGFMTDIADSEWDSAIDGLMAGEFEREERAMLSGAVERAGQTIFSAIAVNDVVVNRNGASGLVELKVEVDGRFMYVQRADGLIVATPTGSTAYALSAYGPILHPSVNGVVLVPIAPHTLSNRPIVLPGGADIVIEVVTPRDVSVNFDMQSYAELIGGDRIRIGQAPYRCVFLHPPGWSYFSTLRRKLHWHEGPDES
>NZ_CP020046.1|WP_079417269.1|1437742_1438762_+|heat-inducible-transcriptional-repressor-HrcA
MDERARLLLKTLIEHYIADGQPVGSRTLSRASGLELSAATIRNVMADLEDLGLITSPHTSAGRIPTPRGYRIFVDAMLTAQSPKQPDLLPQTLQQHIDTAPPQQVMMRAAQLMSSLSQFVGVVLAPQRSAAFRHIEFLQLSEHRILLIIVSPEGDVQNRMLHWPHALSQNELNTATNYLNAHFSGMSFEQVAQKLGSEVEHLRSELVALMQAGVQAGSQALQQPQDQVVISGQQQLLGIGDLSGNLGKLRQLFDLFEQKAQLLKLMDASARADGVRIYIGGESEAVPFEELSVITAPYAADGTVIGTLGVIGPTRMAYDRMIQIVDITAKLVGNALSQR
>NZ_CP020046.1|WP_079417271.1|1438942_1439368_-|universal-stress-protein
MLIVLPVDGSSYTLKAAQVLVHHARLYSEPPSVVLFTVALPIGTPLARAQISKATLDDYYREVSAQALAPAEAVLKDAGLAYEARDGVGDPAEQIAAEARRLQPDLLIMGTHGHSALKGFVMGSVASKVVASTTVPVLLVR
>NZ_CP020046.1|WP_079417273.1|1439502_1440609_-|porin
MKKSLIALAVLGTFGMGAAQAADTVQLYGIIDLGVAHFNNDGAGNVTKLGTGGQSGSRIGLKGSEDLGGGLTAIFQAETGFCANGGSSASATGGSTTTTGNQYCTGGGFMGRTSMVGLKGSFGTVAAGRMYTLDFNDQAAVDPFGYGLMGNIANIGTIGSPARASQMVAYMSPSFGGFNFAAGYVFGDGLTGLTTATTTQTTGAYNLHAGYNNGPLMVGLDYLRVNNSNGDATVKHTMLVGTYDLGVAKLAAMYAQNKPNANAAGATVNTNQQAWMLGGTIPVGPGAVLVSYTQTKNKSVSASTSKQIALGYTYSLSKRTNLYASYARITNDANANAIVNDSTGNNDAPMGPNGLTSTGFDFGIRHQF

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Crispr_ID: NZ_CP020046_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_10

1436334-1436446

Orphan

Consensus_repeat	Method
CCCTCCCCACTCGTGGGGAGGGTTGGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_10

>merge|NZ_CP020046|10|1436334-1436446|CRISPRCasFinder
CCCTCCCCACTCGTGGGGAGGGTTGGGGTGGGCATCTCCCCCTCCCGGCCTCCCCCACGGTGTGGGGGAGGTGAGATCACCCCCTCCCCACTCGTGGGGAGGGTTGGGGTGGG

>NZ_CP020046|10|10|1436334-1436446|CRISPRCasFinder
CCCTCCCCACTCGTGGGGAGGGTTGGGGTGGG	CATCTCCCCCTCCCGGCCTCCCCCACGGTGTGGGGGAGGTGAGATCACC
CCCTCCCCACTCGTGGGGAGGGTTGGGGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079417251.1\|1426315_1426816_+\|dihydroneopterin-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236516
NZ_CP020046.1\|WP_079417281.1\|1443931_1445482_+\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP020046.1\|WP_079417255.1\|1427751_1429098_+\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NZ_CP020046.1\|WP_079417269.1\|1437742_1438762_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP020046.1\|WP_079417279.1\|1443378_1443885_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP020046.1\|WP_079417275.1\|1440911_1441994_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP020046.1\|WP_079417263.1\|1433577_1434537_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP020046.1\|WP_079417265.1\|1434553_1436215_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP020046.1\|WP_079417273.1\|1439502_1440609_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP020046.1\|WP_079417283.1\|1445566_1446193_-\|DUF4136-domain-containing-protein	unknown	unknown	gnl\|CDD\|379281
NZ_CP020046.1\|WP_079417259.1\|1431926_1433081_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP020046.1\|WP_079417271.1\|1438942_1439368_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP020046.1\|WP_079417249.1\|1425485_1426145_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NZ_CP020046.1\|WP_154048442.1\|1430883_1431942_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP020046.1\|WP_154048443.1\|1442738_1442939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079417261.1\|1433428_1433617_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020046.1\|WP_079417253.1\|1426909_1427749_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP020046.1\|WP_079417267.1\|1436534_1437428_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179379
NZ_CP020046.1\|WP_079417257.1\|1429432_1430674_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP020046.1\|WP_079417277.1\|1442216_1442660_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|182688

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079417251.1\|1426315_1426816_+\|dihydroneopterin-triphosphate-diphosphatase	gnl\|CDD\|236516	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional.	1.23539e-76
NZ_CP020046.1\|WP_079417281.1\|1443931_1445482_+\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP020046.1\|WP_079417255.1\|1427751_1429098_+\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	1.69205e-92
NZ_CP020046.1\|WP_079417269.1\|1437742_1438762_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.59936e-144
NZ_CP020046.1\|WP_079417279.1\|1443378_1443885_-\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	7.02962e-18
NZ_CP020046.1\|WP_079417275.1\|1440911_1441994_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	2.81072e-47
NZ_CP020046.1\|WP_079417263.1\|1433577_1434537_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	6.63093e-150
NZ_CP020046.1\|WP_079417265.1\|1434553_1436215_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP020046.1\|WP_079417273.1\|1439502_1440609_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	6.32411e-53
NZ_CP020046.1\|WP_079417283.1\|1445566_1446193_-\|DUF4136-domain-containing-protein	gnl\|CDD\|379281	pfam13590, DUF4136, Domain of unknown function (DUF4136). This domain is found in bacterial lipoproteins. The function is not known.	2.13332e-08
NZ_CP020046.1\|WP_079417259.1\|1431926_1433081_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.97793e-36
NZ_CP020046.1\|WP_079417271.1\|1438942_1439368_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.4399e-21
NZ_CP020046.1\|WP_079417249.1\|1425485_1426145_+\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	6.76998e-113
NZ_CP020046.1\|WP_154048442.1\|1430883_1431942_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	6.92445e-50
NZ_CP020046.1\|WP_079417253.1\|1426909_1427749_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	2.03803e-41
NZ_CP020046.1\|WP_079417267.1\|1436534_1437428_-\|NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	4.14035e-150
NZ_CP020046.1\|WP_079417257.1\|1429432_1430674_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.1354e-57
NZ_CP020046.1\|WP_079417277.1\|1442216_1442660_-\|OsmC-family-protein	gnl\|CDD\|182688	PRK10738, PRK10738, OsmC family protein.	3.45971e-40

>NZ_CP020046.1|WP_079417265.1|1434553_1436215_-|DNA-repair-protein-RecN
MLLHLHLRDFVIVPELDIDLAAGFTVLTGETGAGKSILIDALKLALGERADSSVVRAGALRAEISAEFSLTPPLAAWLEAQGFAAEADTLLLRRVIDAQGKSRGFLNGSPATAAQLKAAGEWLVDIHGQHAYQGLVRREVVTQLLDGYAGAQDEARAVAQAWAQWRDAHAALQQARRDAGALDEERERLQWQCEELDRLQPQFGDWEALEAEHKRLAHVSSLLEDFAAAAGALDGEDQGVLPLLAQAQQALERALQVDAGLQPLVQQIEAAQTSLSDLSHELRRLAERTEADPQRLAELDVRLSGWMSLARKHRVTAAALPQTHQTLRDKLQQLNLSADLPALESAEQQALAALQKVAAKLSARRRKAAQQLAKAVQAAMQELGMPGGRFDVALVPLDAVGARGAEAVELQVAAHPGAELRALGKVASGGELSRIALAVAVTTSALQDTDTLIFDEVDAGIGGAVAQTVGRLLRRLGGDRQVLAVTHLAQVAACAQQHFAVRKHSSGQQTASLLDALAPAQRPGEIARMLGGNAQSDAALEHARELLAACDAT
>NZ_CP020046.1|WP_079417263.1|1433577_1434537_-|RNase-adapter-RapZ
MNPSEPSAAAPSADSRSTHQLVLISGLSGSGKSVALTALEDSGYYCVDNLPPQLITPLVEQTRASGQKRVAVAVDARSAESLADVPALLKNLRACCEVHAIYLDCATDTLVQRFSETRRRHPLTSRATAHQSGHAAAARGEGYANALIESIELERELLHPVAEIGLHIDTSQMKSAQLREWIKQVVRVQASQMVVMFESFAFKRGVPLDADYVFDVRMLPNPHYDPVLRPLTGRDVPVAEFLLRQPEVLQMQADITGFLQRWLPRLAADHRSYVGVAIGCTGGQHRSVYLSEQLSRAFASQYTVLLRHRELGATGASEQ
>NZ_CP020046.1|WP_079417261.1|1433428_1433617_+|hypothetical-protein
MKRRLPWLMALFWAAVVMLLVLDWRVSAPHDRFAEPPPLALGNGPAADAGHCSLAPVAPSSR
>NZ_CP020046.1|WP_079417259.1|1431926_1433081_+|YeeE/YedE-family-protein
MASPLNPAIRTAVAQTSEPSRSRLPRSLLVACGLAGFAAITWLVGWRQGLLWLIGLGYGVLLAAAAFGFTTGWRVWITRRDPKGLWAQFVGIAVAMIISVPLLAAQPTLQGADGPLSISLLVGAFVFGAAMQVADGCGSGTLYKAGLGHPVSLAVLPAFVFGSFLGAAQLPAWLSLGALPPVNLVHRLGATQTLIIQLAALALLAALLWRFRGSQPSRWRGSAVWWAAIGLGLLATANLAVAGQPWGIVYGLGLWGAKIVQALGIDLSGNAFWGLPAQQAQLHTTVLADNTSVTDLGLLLGALIAARWRGKASPAVTLPARQWLASIIAGLLLGYSSRLAFGCNVGAYFSGIATGSLHGWVWFACAFAGSLIGVRLRHRLGMQD
>NZ_CP020046.1|WP_154048442.1|1430883_1431942_+|sulfurtransferase
MPCMNTPPPTPFPSTSRTARRSGWSRLCRVCALGWLLAAWALQQGVSAASVHPAGPQAFGPLISASALAARRDQVRIIDLRDAAGEPDVAHIPGALPAPYADWRGPASNPGQLRPLPEFTALVRRLGLTAETPAVLVATGDDPSDFGAPARVYWTLKWLGLRHLAILNGGMTAWQAAGLPITRKPTPPAAPSAFTPQLDDALLATRSDVAQDLTRPGTLLLDARPRAFYLGREKAPAARRPGTLPGALDFDNLRWFEPGSGALPDTATLERIAQGLPKPLEAAPTDGVVSFCNTGHWAATNWFVLSQVLRRPHVALYPGSMVDWSRTDAPMAHVPTRLQQLWQQMGLTWQAL
>NZ_CP020046.1|WP_079417257.1|1429432_1430674_-|GGDEF-domain-containing-protein
MAETAGACPPGAEWIELLPACVVMLVGDVVRYANPAALRLLQARQPSDLIGRTLETFIHPLDLHRSLARLRHAESGGTNPVTEIRAYTCDGRPLMLAMSSTTLPIEGHTAVLSTFLDMTERAAMEQQLRQTDEDFQRMMNTMQDVFYRTDAQGITRYVCPAVKNVLGYTAEEIIGLPAAAFYPDLSERDALVAEIRKHGAVHDFPGRMRRKDGVIIDISISTQALRDEQGQYAGVEGIWRDISERKALERRLEHLATCDSLTGIHNRRSVLAILDQLLQRKAPLSVLLLDLDHFKRVNDGFGHAAGDGVLCRFAQIINQEKRSRDFFGRLGGEEFLLILDGADEAEALQIAERLRLAVSAQAIALPEGATVALTVSIGMTQLRPGDLRTADVLVRADRALYRAKASGRNQVCG
>NZ_CP020046.1|WP_079417255.1|1427751_1429098_+|cardiolipin-synthase-ClsB
MRPDPPSAPDDIPLNWVHGAAPRLLPFGSALFPAMHRAIEQARESIWLQTYIFHTDEASMGIAGALCDAARRGVQVRVLVDGLGSGRSIDTLSGRFAEAGVEFMVFRPWRLWTDVVQRGRWRRLHRKLCVVDAQIAFIGGINLIDDRFDLHHGWSAEPRLDYAVQYHGHLARQTQWVMQRLWLRTVLTGSLQRRLRKMPGPGVFDTSPNRRAYWQELLDWGGPMPEVQEDGSPLRPEAPQPAKAAAPAPETEPGAAASLATLVVRDNFSRRRAIERSYIRAIHRARERVLIVSPYFYPGREFRQALKNAAARGVRVDLLLQGRIDYRMAAWAARALYGEMLRAGVHIFEYTPAYLHAKVAVVDEDWATVGSSNIDPLSLLVNLEANLAVRDRAFARELGAHVEHQLARSLPINTPDRLRTRAPWWLSPFVAVAARAFVALAGGVRKEY
>NZ_CP020046.1|WP_079417253.1|1426909_1427749_+|endonuclease/exonuclease/phosphatase-family-protein
MELRVASYNIHKGVLGHGPAKRASILELHTALQGLEPDLVFLQEVQFLHQRHANRLSGWPALPQHDFLGQALGMHAAYRTNACTRHGEHGNALLSRYPIIDIDHCDVSDHRFEQRGLLHVQVALPRGGPLHCIVVHFGLFAASRQRQTDRLLDYIAARVPAQATLIVAGDFNDWHGRIGPQLQQQRLIDVSEPPLKTNGKTSWRNRVRTYPARLPLMPLDRIYARGLTASEIGLGWGRAWARLSDHAPLLAALRCDLPDCPEAPGPGLAAQGSKTDIAV
>NZ_CP020046.1|WP_079417251.1|1426315_1426816_+|dihydroneopterin-triphosphate-diphosphatase
MDASTLSPPLSDAGRKIPVSVLVVIHTPALEVLLIERAQQPGFWQSVTGSIDAPGESLAATARREVAEETGIHTGTAALPSGALRDWHLANVYEIYPLWRHRYPAGTWKNTEHVFSLEVPAGTAVTLAAREHRAQVWLPWQEAARRCFSASNADAIRQLPHRLMPR
>NZ_CP020046.1|WP_079417249.1|1425485_1426145_+|peroxiredoxin
MEQTTEVFGLPRLNEPAPNFVAKTTHGDRTLADYKGKWLILFSHPADFTPVCTTEFMGFAREAETFKSMNCELLGLSIDSIFAHLAWVRSIKQHFGVDIPFPIIEDLKMDVARAYGMIHPGAADTQAVRATFFIDPNGILRAMVYYPMSNGRSINEFVRLLQALQTSDKHGVATPEAWCPGDKVIVPPPKTSAAAEERVSKGASMGMEVTDWYFSKKTL
>NZ_CP020046.1|WP_079417267.1|1436534_1437428_-|NAD-kinase
MLRTVFQQVLLIGKYQAPQAQRKLGEIAARLSRAGVEVWVGELTAQHTELPYPVLRSSELAERTAQGGWVAVVLGGDGTMLGAARRLAPLNVPLVGINAGRLGFMTDIADSEWDSAIDGLMAGEFEREERAMLSGAVERAGQTIFSAIAVNDVVVNRNGASGLVELKVEVDGRFMYVQRADGLIVATPTGSTAYALSAYGPILHPSVNGVVLVPIAPHTLSNRPIVLPGGADIVIEVVTPRDVSVNFDMQSYAELIGGDRIRIGQAPYRCVFLHPPGWSYFSTLRRKLHWHEGPDES
>NZ_CP020046.1|WP_079417269.1|1437742_1438762_+|heat-inducible-transcriptional-repressor-HrcA
MDERARLLLKTLIEHYIADGQPVGSRTLSRASGLELSAATIRNVMADLEDLGLITSPHTSAGRIPTPRGYRIFVDAMLTAQSPKQPDLLPQTLQQHIDTAPPQQVMMRAAQLMSSLSQFVGVVLAPQRSAAFRHIEFLQLSEHRILLIIVSPEGDVQNRMLHWPHALSQNELNTATNYLNAHFSGMSFEQVAQKLGSEVEHLRSELVALMQAGVQAGSQALQQPQDQVVISGQQQLLGIGDLSGNLGKLRQLFDLFEQKAQLLKLMDASARADGVRIYIGGESEAVPFEELSVITAPYAADGTVIGTLGVIGPTRMAYDRMIQIVDITAKLVGNALSQR
>NZ_CP020046.1|WP_079417271.1|1438942_1439368_-|universal-stress-protein
MLIVLPVDGSSYTLKAAQVLVHHARLYSEPPSVVLFTVALPIGTPLARAQISKATLDDYYREVSAQALAPAEAVLKDAGLAYEARDGVGDPAEQIAAEARRLQPDLLIMGTHGHSALKGFVMGSVASKVVASTTVPVLLVR
>NZ_CP020046.1|WP_079417273.1|1439502_1440609_-|porin
MKKSLIALAVLGTFGMGAAQAADTVQLYGIIDLGVAHFNNDGAGNVTKLGTGGQSGSRIGLKGSEDLGGGLTAIFQAETGFCANGGSSASATGGSTTTTGNQYCTGGGFMGRTSMVGLKGSFGTVAAGRMYTLDFNDQAAVDPFGYGLMGNIANIGTIGSPARASQMVAYMSPSFGGFNFAAGYVFGDGLTGLTTATTTQTTGAYNLHAGYNNGPLMVGLDYLRVNNSNGDATVKHTMLVGTYDLGVAKLAAMYAQNKPNANAAGATVNTNQQAWMLGGTIPVGPGAVLVSYTQTKNKSVSASTSKQIALGYTYSLSKRTNLYASYARITNDANANAIVNDSTGNNDAPMGPNGLTSTGFDFGIRHQF
>NZ_CP020046.1|WP_079417275.1|1440911_1441994_-|porin
MKKSLIALAVFSAFSGAAFAADSVQLYGTLDMGVTRYSNGSADSLTNMTSGVLNGTKFGVKGTEDLGGGLTAGFQAETGFCSQGGGTGYGSTTPAGNQYCTGGGFMGRTSMVNLSGGFGTVAAGRMYSFTDNSIGTVDPTANSLLGYSGQLIPADSISRISQMIAYMSPTLLGGLTLNAGYAFGDGTGLTTKTTGAYNLNATYAAGPIVAGLDYQRLNVDTATSSGAAAIKNTMLFGSYDFGVVKVGGLFARNKPDASTLLDETDSWMLGVSAPIGAGSLQLAYTQLKDKTTEANGANVWNLGYVYAMSKRTQLYANYARLSNKSAAMYTISGAMGVSAPTPTTGGFNSSGFAVGISHSF
>NZ_CP020046.1|WP_079417277.1|1442216_1442660_-|OsmC-family-protein
MQCTVQWEGSDGMAFTAHTETGHTLRMDGAPASAPGEPGGHNLAPRPMETVLVGTGGCTAYDVVFILKKARQDVRGCTVRLDAERATADPKVFTRIHMHFVVTGVNLREDMVRRAVELSHTKYCSASAMLEKTAVMTFDIEIKSSEI
>NZ_CP020046.1|WP_154048443.1|1442738_1442939_+|hypothetical-protein
MTTVTLDRRELRMVDAQSNAVANVFHQAQDAADLAIKPVLREMARCLTIYWAACRSLRSAGCADFC
>NZ_CP020046.1|WP_079417279.1|1443378_1443885_-|DedA-family-protein
MRPSALVSNPAVLIPAEWVGAAVASWHALLQSASGPSGLYVLAALSFAAATLIPFSSEAVLLVVISAQPQHTALAVVVATLSNTVGGMTTYALGRWVRHWQTPDAWRWAPQVRHWGAPITVLAWVPGIGDALVVVAGWLRINAWACAGWMLLGRSLRYIAVAGLALAL
>NZ_CP020046.1|WP_079417281.1|1443931_1445482_+|threonine-ammonia-lyase,-biosynthetic
MAAKHTDYLQRILNARVYDVAIESALEPARNLSRRLHNKVLFKREDTQPVFSFKLRGAYNKMSRLTEAERKRGVICASAGNHAQGVALSAHRLGCRAVIVMPATTPKVKIDAVRALGGASVDVVLQGESYSDAYAHALTLQDKQGLTFVHPFDDPDVIAGQGTIAMEILRQHQAPIHAVFCAIGGGGLISGVAAYIKAVRPEIKVIGVQTVDSDAMLRSVQTGRRVTLSEVGLFCDGTAVKQVGRETFRLVRDLVDDFVVVDTDAVSAAIKDVFEDTRSVLEPSGAMSVAAAKAYCAQHKLKGETLVAVTCGANMNFDRLRFVAERAEVGEAREALFAVTIPEKPGSFRRLCRLVGARNVTEFTYRIKGPEAAHVFVGLTVNGRDDAQKMAQTFERSGYGVLDLTDNELAKVHVRHLVGGPAPRGPQGQSMAENERLLRFDFPERPGALLRFLDALSPDWNISLFHYRNQGGDSGRVLVGIQVPPADKRAFSRFLQQLGYQYSEETDNPATRLFLN
>NZ_CP020046.1|WP_079417283.1|1445566_1446193_-|DUF4136-domain-containing-protein
MRLPDSLTRLWHCARIGLLLVPALLLGGCASLTDLRATVVTPNPAPQALVGAKVQVQAAPGNADSADAYALQTAVLDAMTQAGMVPLLGAPAPYTARYTYTVRLDLEATYGPSVWPPPVLLPNGTVYFPGGYRGWGGGMFGWMPPPNYYDRSLSLEIRDTATGALIWQSHATTGGYERGLASVALPLAQAALRGFPSEYGEHKVLFPR

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Crispr_ID: NZ_CP020046_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_11

1486941-1487088

Orphan

Consensus_repeat	Method
GCAGCGAAGACATCAATTATTGCACTAATTTTATTTCCGAGTCAAGCGAAAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_11

>merge|NZ_CP020046|11|1486941-1487088|CRISPRCasFinder
GCAGCGAAGACATCAATTATTGCACTAATTTTATTTCCGAGTCAAGCGAAAGGTTATTAACTACTTTCTTTTTTCTTGCTTCGTTTCGCTGTTTGCAGCGAAGACATCAATTATTGCACTAATTTTATTTCCGAGTCAAGCGAAAGGT

>NZ_CP020046|11|11|1486941-1487088|CRISPRCasFinder
GCAGCGAAGACATCAATTATTGCACTAATTTTATTTCCGAGTCAAGCGAAAGGT	TATTAACTACTTTCTTTTTTCTTGCTTCGTTTCGCTGTTT
GCAGCGAAGACATCAATTATTGCACTAATTTTATTTCCGAGTCAAGCGAAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079417372.1\|1494766_1495744_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225797
NZ_CP020046.1\|WP_079417348.1\|1475239_1475554_-\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NZ_CP020046.1\|WP_079417376.1\|1496617_1497037_-\|DUF937-domain-containing-protein	unknown	unknown	gnl\|CDD\|226276
NZ_CP020046.1\|WP_055449832.1\|1477014_1477326_-\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_CP020046.1\|WP_013107283.1\|1480764_1481235_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP020046.1\|WP_079417370.1\|1493400_1494714_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP020046.1\|WP_079417346.1\|1474414_1475239_-\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NZ_CP020046.1\|WP_079417344.1\|1474128_1474404_-\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NZ_CP020046.1\|WP_079417364.1\|1490560_1492204_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP020046.1\|WP_079417352.1\|1476170_1476833_-\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_CP020046.1\|WP_079417358.1\|1487231_1488107_-\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|238799
NZ_CP020046.1\|WP_079417350.1\|1475550_1476171_-\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_CP020046.1\|WP_179947973.1\|1488161_1488824_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP020046.1\|WP_079417366.1\|1492095_1492554_-\|DUF2784-domain-containing-protein	unknown	unknown	gnl\|CDD\|378502
NZ_CP020046.1\|WP_079417368.1\|1492746_1493388_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP020046.1\|WP_079417354.1\|1477394_1478585_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP020046.1\|WP_079417362.1\|1489999_1490524_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NZ_CP020046.1\|WP_055451829.1\|1481331_1481706_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP020046.1\|WP_079417374.1\|1495820_1496495_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP020046.1\|WP_079417356.1\|1478638_1480744_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079417372.1\|1494766_1495744_-\|c-type-cytochrome	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	6.23345e-88
NZ_CP020046.1\|WP_079417348.1\|1475239_1475554_-\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	5.34212e-40
NZ_CP020046.1\|WP_079417376.1\|1496617_1497037_-\|DUF937-domain-containing-protein	gnl\|CDD\|226276	COG3753, COG3753, Uncharacterized protein conserved in bacteria [Function unknown].	3.25763e-20
NZ_CP020046.1\|WP_055449832.1\|1477014_1477326_-\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	4.51069e-66
NZ_CP020046.1\|WP_013107283.1\|1480764_1481235_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	3.42406e-103
NZ_CP020046.1\|WP_079417370.1\|1493400_1494714_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.23931e-29
NZ_CP020046.1\|WP_079417346.1\|1474414_1475239_-\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_CP020046.1\|WP_079417344.1\|1474128_1474404_-\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	7.96871e-63
NZ_CP020046.1\|WP_079417364.1\|1490560_1492204_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	3.56238e-161
NZ_CP020046.1\|WP_079417352.1\|1476170_1476833_-\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	1.20081e-114
NZ_CP020046.1\|WP_079417358.1\|1487231_1488107_-\|aminotransferase-class-IV	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	2.34776e-106
NZ_CP020046.1\|WP_079417350.1\|1475550_1476171_-\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	1.25655e-102
NZ_CP020046.1\|WP_179947973.1\|1488161_1488824_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.76311e-54
NZ_CP020046.1\|WP_079417366.1\|1492095_1492554_-\|DUF2784-domain-containing-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	1.06003e-23
NZ_CP020046.1\|WP_079417368.1\|1492746_1493388_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.11896e-39
NZ_CP020046.1\|WP_079417354.1\|1477394_1478585_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP020046.1\|WP_079417362.1\|1489999_1490524_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	5.86888e-53
NZ_CP020046.1\|WP_055451829.1\|1481331_1481706_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.94037e-87
NZ_CP020046.1\|WP_079417374.1\|1495820_1496495_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.80783e-17
NZ_CP020046.1\|WP_079417356.1\|1478638_1480744_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0

>NZ_CP020046.1|WP_055451829.1|1481331_1481706_-|30S-ribosomal-protein-S12
MPTINQLVRSPRVSERIKSKSPAMENCPQRRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSLDLQAVKDRKQSRSKYGAKRPKK
>NZ_CP020046.1|WP_013107283.1|1480764_1481235_-|30S-ribosomal-protein-S7
MPRRREVEKREILPDPKFGSVDVAKFMNVVMLSGKKAVAERIVYGAFDTIQEKSGKDPLEVFSAAMGNVRPMVEVKSRRVGGANYQVPVEVRPSRRMALAMRWIREAAKKRNEKSMQQRLANELLEAAEGRGSAMKKRDEVHRMAEANKAFSHFRF
>NZ_CP020046.1|WP_079417356.1|1478638_1480744_-|elongation-factor-G
MARTTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGMDRSLPDHRINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYEQMRTRLKANPVPIVVPIGAEENFKGVVDLLKMKAIIWDEASQGMKFSYEDIPADLVETCKEWREKMVEAAAESSEELMNQYLESGELSEDEIKQGLRARTIASEIQPMLCGTAFKNKGVQRMLDAVIEFMPSPVDIPPVSGHDDDEQEAVRKAADDEKFSALAFKLMTDPYVGQLTFIRVYSGVLSSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVRAGDIAAAVGLKEVTTGETLCSPDAIITLEKMVFPEPVIAQAVEPKTKADQEKMGLALQRLAQEDPSFRVKTDEESGQTIISGMGELHLEIIVDRMKREFGVEANVGKPQVAYRETIRKTVDNAEGKFVRQSGGKGQYGHVVLKVEPNEVGKGFEFVDAIKGGVVPREYIPAVQKGVEESLNSGVLAGYPVVDVKVTLHFGSYHDVDSSEQAFKIAASMGFKEGCRKASPVILEPMMAVEVETPEDYAGNVMGDLSSRRGMVQGMDDMVGGGKAIKAEVPLSEMFGYSTTLRSMSQGRATYTMEFKHYAEAPKNVADAIVSARASK
>NZ_CP020046.1|WP_079417354.1|1477394_1478585_-|elongation-factor-Tu
MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSAKFGGSAKKYDEIDAAPEEKARGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDAELLELVEMEVRELLSKYDFPGDDTPIIKGSAKLALEGDKGDLGEKAIFSLADALDSYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGIVKVGEEIEIVGIRPTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLCKPGSVKPHTHFTAEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAVELPKDKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE
>NZ_CP020046.1|WP_055449832.1|1477014_1477326_-|30S-ribosomal-protein-S10
MQNQKIRIRLKAFDYKLIDQSAMEIVDTAKRTGAIVKGPVPMPTRLQRFDILRSPHVNKTSRDQLEIRTHLRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ
>NZ_CP020046.1|WP_079417352.1|1476170_1476833_-|50S-ribosomal-protein-L3
MSSHSMGLVTRKVGMTRVFTDDGESIAVTVLDASGNRVSQVRTQDVDGYSAVQVAFGSRKPSRLTKGQAGHLAKAGVEPAEILKEFDLPSDKAAAYAPGATVPATLFQVGQMVDAQGVSIGKGFAGSIKRHNFSSNRASHGNSVTTRAPGSIGMAQDPGRVFPGKRMAGQLGNETVTVQNLEVVRIDESRQLILVKGAVPGSRSGFVFLRPAVKSAAGGQ
>NZ_CP020046.1|WP_079417350.1|1475550_1476171_-|50S-ribosomal-protein-L4
MQLEFLNAQGQPADKFDVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHSTRKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLAREGRLVVVDNFTVDAPKTKLVAEKCKAMGFDSVMIIADGTDENLFLAARNLPNVLVVEPRYADPLSLLFYKKVVMTKGAVSQLQEMLS
>NZ_CP020046.1|WP_079417348.1|1475239_1475554_-|50S-ribosomal-protein-L23
MTQAVLNPQRLMQVLSAPVISEKATLVAEKRNQVVFRVLRDATKPEIKAAVELLFKVDVESVQVANIKGKVKRTARGTGRRNHVKKAYVCLKAGQELNFAQEGI
>NZ_CP020046.1|WP_079417346.1|1474414_1475239_-|50S-ribosomal-protein-L2
MPVVKVKPTSAGRRAVVKVTHPHLYKGEPERSLLEPQFQKAGRNNNGHITTRHRGGGHKHHYRVVDFRRDKDGIPAKVERIEYDPNRTAHIALVCYADGERRYIIAPRNLEVGAMLMSGSEAPIRAGNALPIRNIPVGSTIHCIEMQPGKGAQIARSAGASAVLLAREGIHAQVRMRSGEVRRIHIDCRATLGEVSNEEHNLRQYGKAGAIRWQGIRPTVRGVAMNPVDHPHGGGEGKTGEGRVAVSPWGTPTKGYRTRNNKRTQSMIVSRRKK
>NZ_CP020046.1|WP_079417344.1|1474128_1474404_-|30S-ribosomal-protein-S19
MARSLKKGPFCDQHLLKKVEAAVSTKDKRPVKTWSRRSTILPEFIGVTIAVHNGKQHVPVYVSDQMVGHKLGEFALTRTFKGHPADKKAKR
>NZ_CP020046.1|WP_079417358.1|1487231_1488107_-|aminotransferase-class-IV
MSASPLSLEASECYLNGTFQPLSQCQVSVLDRGFIFGDGVYEVIPVYGRRVFRAQDHLARLLRSLSAIGIKSPRQAADWLSLVRELVARNTPDDQCIYIQVTRGVAKRDHAFPQGVEPTVFMMSSPFPHLSMERRSQGMACITAPDLRWRNAHIKSISLLGNVLARQLSVENDASETILIRDGFLTEASASNVWLVRNGRLAAPQRDHDKLEGIRVSLLEELTAALGVVLEFRPVAEWELRCADEILLTSATKEVVSVTAIDGKSVGAGLPGPVGISLYQAYQEAKRLQSH
>NZ_CP020046.1|WP_179947973.1|1488161_1488824_-|response-regulator
MQCALVVDDLPAVRAGFVELLRENYPGARIFEAGRMADAMQLLQREPVDLLLVDLGLPDASGLELIRTLTDTRPQARSVVVTIFDDDDHLFPALQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSIARRMVQHFTHLHRTMSAPSSNVPQEDQIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRAEAALEAVRRGLVR
>NZ_CP020046.1|WP_079417362.1|1489999_1490524_+|rRNA-maturation-RNase-YbeY
MTRPARLPSPALRLSVQFADPTHRALLPRALLLRWIRAALRVGPQTCEPQSSNGEARPHQITLRFVTADEGQALNRDYRGKDYATNVLTFDYGHWPVLADIVLCSPVVAREAQAQDKPLVAHYAHLVIHGVLHAQGWDHLTEREAQEMERHEVAALQRFAIPDPYADGSTLPAG
>NZ_CP020046.1|WP_079417364.1|1490560_1492204_+|apolipoprotein-N-acyltransferase
MPAHPAPRDRHSARPRSRLGRLLAHPRLAPFLSILLGGLLAQTFGRPQFGAWSILILALWIGLLWADPQSTRSKRAKRGALLGFSLGLGWFTGGLWWLYISMAVYGGMSPPLAGGALLLFCAYLAIYPTLAAALAAALAPPARREPWPLLQALGSACVLAGGWTLAEWLRGTVFTGFPWLALGYAQVGNPLSGYAPVVGQYGVNFAAALAAALLALLSQVSLRGALVNVALLAALFLGGLQLQQVRWTHPVGPALRVALLQGDVAQSEKFRPDSLAPTLRLYGDWLSSLHADLIVTPETAVPVLPEDLDPSYLRQVERSLREHHAAALLGIPLTRGTDQYTNSVLGLGGTAPYRYDKAHLVPFGEFVPYGFHWFVKLMDMPLGSFARGGFDQPPFVVQGVKVAPNICYEDLFGAQMAQRFRSPGHAPNLFANLTNLGWFGNTIVIPQHLEIARMRSLEFQIPGIRATNTGATALIDARGRVAAELPPYTVGVLNVTVQGHAGLTPFAWAASRYGDWPEVLLALFALLLGWALARPQRGGTRHHSAKV
>NZ_CP020046.1|WP_079417366.1|1492095_1492554_-|DUF2784-domain-containing-protein
MSAAFDLFLAHLVLGVHLGVILFNVAGLIVVPLGAWRRWSWVRGCFWRAAHLLSMAVVAAQAAMGRACFLTLWQSELLRDAGRQGYAAGLIQTWIDRLIFWNLPLSVFTVLYLAVGVYTLALWWRVPPRCGRARAQPSSNAKRASSTSGQSP
>NZ_CP020046.1|WP_079417368.1|1492746_1493388_+|TlpA-family-protein-disulfide-reductase
MPSMTVLMRRASAVLAVCIACAPASWAAGFTFTPYPTPHNLPLSQVTFENAQGKAMTLADFKGKVVLLNIWATWCPPCVREMPTLDKLQKQLGSKDFAVVPLSVDKGGIYTVKSFYDDNFIGNLPIYVDPTTHALDTLSILGTPTTILIDKQGKEIARTMGPENWDQAAVIAQIKHYMAAPSGTTAKPQQQAHALETRDAHLATASIEQRRPE
>NZ_CP020046.1|WP_079417370.1|1493400_1494714_+|MFS-transporter
MQTAAPPWRPDDASQPKPSAWAQISLAARRVILARMSRSIGQGALVAAFTLYLHALQWSAPQIGAVLSGGLFIGAALTLWIGPLSDRLGRRQFLLGYELILVICAAVALFTSTPWLLVPAALLGGFGRGANGAAGPFGPLEQAWLAHGTPPALRSQIFSLNSTLGMLGMALGAVFGAAPHWLSSLMSQDWAYRSLFVLPLLGSAAGFFLLLTAEDAPTASRVEPRPLSALGADERSDDDSPRQERHRRENRLLWRLGLVNALNGLGIGMVAPLMAYWYLVRFGHGPASIGPAMAASFVFAAFGAQVASRLAQRFGAVRAVVGMRTAGLLMLLLTPLSPVFWIAASFYALRATANQGTMGVRQALTVSLTGADRRGLAATVNNVSIQIPRAIGPLFAGVLLHMGWLVAPFLVAAAFQALYLVLYQRLFRNIEPSKAAT
>NZ_CP020046.1|WP_079417372.1|1494766_1495744_-|c-type-cytochrome
MTVLITRATSRLHRHGRLALLQAALLAAAGTATAAAQTPAVPVAPPPSQINAAVGTGSKFQPPPESAIPNNDFGKMVRLGRDIMVDTPKYAKAYVGNSLSCVNCHTDGGRMAGSAPMWAAYVSYPAYRAKNKKVNTFEERLQGCFMYSENGKAPPLGSEPLVALESYAYWLSTGLPVDEKTPGRGYPALAKAAQAPDYVRGQKVYAQSCAICHGADGQGQYVEGKTVFPPLWGDKSFNWGAGMGSIKSAAEFIHANMPYGQSYSLTPQQAWDVAYFMDAQERPQDPRWTGTVAGTRAKYHDSKFSLYGTKVNGKLLGDTGAPKAR
>NZ_CP020046.1|WP_079417374.1|1495820_1496495_-|c-type-cytochrome
MIRSNPLHQFLRRLAASVAVLAASAALPVLAATAADPASCAACHGANGMGNAAAGYPRLAGLPKAYIEAQLKAFADGQRNNALMSAMAKPLNPADISHLAAYYSGLHLGEAPLAKAPPAEQAALGDALVHQGDWSKGIPACIRCHGPGLEGVGTAFPPLLGQPAAYIEAQIKAWKEGTRRGDPQALMQTVALRMTDAQTQAAAAWLAAQPVPGPKAAAPVKKAP
>NZ_CP020046.1|WP_079417376.1|1496617_1497037_-|DUF937-domain-containing-protein
MGLFDSVAGGLGQMLGGQQAQGGAGDNPMLQAVMGLMNDSGGLSGLLSKFQQGGLGDLVQSWVGTGANLPISAEQIQQVLGSGALGDMASKLGIQPEQVAGALSQSLPQAVDAMTPNGQVPAASDLAGEVQNLIGGLFR

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Crispr_ID: NZ_CP020046_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_12

2843718-2843809

Orphan

Consensus_repeat	Method
ACTGCGCTGCGCGCGATCTGCGTAAGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_12

>merge|NZ_CP020046|12|2843718-2843809|CRISPRCasFinder
ACTGCGCTGCGCGCGATCTGCGTAAGCCCTCCCAACCTCCCCCACGGCGTGGGGGAGGAGAAAACTGCGCTGCGCGCGATCCGCGTAAGCCC

>NZ_CP020046|12|12|2843718-2843809|CRISPRCasFinder
ACTGCGCTGCGCGCGATCTGCGTAAGCCC	TCCCAACCTCCCCCACGGCGTGGGGGAGGAGAAA
ACTGCGCTGCGCGCGATCCGCGTAAGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079419408.1\|2850825_2853498_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP020046.1\|WP_079419413.1\|2858086_2858617_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237621
NZ_CP020046.1\|WP_079419383.1\|2835444_2835765_+\|DUF1049-domain-containing-protein	unknown	unknown	gnl\|CDD\|377648
NZ_CP020046.1\|WP_079419381.1\|2833805_2835323_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP020046.1\|WP_079419387.1\|2836923_2837853_+\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	unknown	unknown	gnl\|CDD\|225425
NZ_CP020046.1\|WP_079419389.1\|2837849_2838851_+\|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl\|CDD\|274028
NZ_CP020046.1\|WP_154048498.1\|2853545_2854650_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP020046.1\|WP_079419412.1\|2856032_2857976_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP020046.1\|WP_079419385.1\|2835754_2836927_+\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|236983
NZ_CP020046.1\|WP_079419393.1\|2840130_2841108_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235479
NZ_CP020046.1\|WP_079419403.1\|2847301_2848246_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP020046.1\|WP_079420651.1\|2831490_2832549_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP020046.1\|WP_079420653.1\|2832752_2833796_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP020046.1\|WP_079419401.1\|2845485_2847084_+\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP020046.1\|WP_079419399.1\|2844058_2845147_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP020046.1\|WP_079419404.1\|2848398_2849517_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176211
NZ_CP020046.1\|WP_079419406.1\|2849779_2850790_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NZ_CP020046.1\|WP_079419391.1\|2838860_2840075_-\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340869
NZ_CP020046.1\|WP_079419395.1\|2841253_2843626_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236976
NZ_CP020046.1\|WP_079419410.1\|2854812_2855937_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079419408.1\|2850825_2853498_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP020046.1\|WP_079419413.1\|2858086_2858617_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	9.01233e-70
NZ_CP020046.1\|WP_079419383.1\|2835444_2835765_+\|DUF1049-domain-containing-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	5.99084e-09
NZ_CP020046.1\|WP_079419381.1\|2833805_2835323_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP020046.1\|WP_079419387.1\|2836923_2837853_+\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	gnl\|CDD\|225425	COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane].	7.57193e-147
NZ_CP020046.1\|WP_079419389.1\|2837849_2838851_+\|ADP-glyceromanno-heptose-6-epimerase	gnl\|CDD\|274028	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	4.30227e-165
NZ_CP020046.1\|WP_154048498.1\|2853545_2854650_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP020046.1\|WP_079419412.1\|2856032_2857976_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP020046.1\|WP_079419385.1\|2835754_2836927_+\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|236983	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.	5.58289e-135
NZ_CP020046.1\|WP_079419393.1\|2840130_2841108_-\|GMP-reductase	gnl\|CDD\|235479	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP020046.1\|WP_079419403.1\|2847301_2848246_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.33383e-32
NZ_CP020046.1\|WP_079420651.1\|2831490_2832549_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.30003e-44
NZ_CP020046.1\|WP_079420653.1\|2832752_2833796_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP020046.1\|WP_079419401.1\|2845485_2847084_+\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.68466e-64
NZ_CP020046.1\|WP_079419399.1\|2844058_2845147_+\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	7.49709e-31
NZ_CP020046.1\|WP_079419404.1\|2848398_2849517_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176211	cd08249, enoyl_reductase_like, enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain.	3.70352e-106
NZ_CP020046.1\|WP_079419406.1\|2849779_2850790_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NZ_CP020046.1\|WP_079419391.1\|2838860_2840075_-\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|340869	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli YjiJ and other uncharacterized proteins. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.78755e-64
NZ_CP020046.1\|WP_079419395.1\|2841253_2843626_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|236976	PRK11773, uvrD, DNA-dependent helicase II; Provisional.	0
NZ_CP020046.1\|WP_079419410.1\|2854812_2855937_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0

>NZ_CP020046.1|WP_079419395.1|2841253_2843626_+|UvrD-helicase-domain-containing-protein
MSALIQQLNPEQHAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVSPAGILAVTFTNKAAKEMMARLSAQLPIPVRGMWIGTFHGLCNRFLRAHWREAGLPQTFQILDIQDQLASIKRLLKGLNVDEERHPPKQVQWFINGAKEQGLRPGDVEARDQQSRQLAEIYLAYEAQCTRDGVADFAELLLRSYEILRDNAPIRSHYRQRFRHILVDEFQDTNRLQYQWLKLLAGPEDAHAACVFAVGDDDQSIYAFRGAHAGNMDDYQREFHVRHFIKLERNYRSHGHILDTANTLIANNTRRLGKNLRTESGAGEPIRVFEAPSDYAEAQWLIEEIRQLLRDGLTPSEIAVLYRANALSRVIEGALFNAGLPYRVYGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPARGIGARTLEQLQDAARLRATPLSEAVDALGGRGAASLQAFLDLVAQMRFQTAAMSLPDLVRHVLEASGLNAHYREEREGQERLENLEELVNAAAAFVTQEGFGLQATAQQRQALSAEAAGAASDSLAAIDGIDPATGETLSPLTAFLTHAALEAGDNQAQNGQDAIQMMTVHAAKGLEFDAVFITGLEEGLFPHENALSEADGVEEERRLMYVAITRARKRLYLSLAQTRMLHGQTRYNLRSRFFDELPVESLKWISARQPGFGGGFGVDQHSNWSYAPKTAVPAFNSPTSRGGQTRLTANATPSVADSSSMPQTGTRAHGLRSGQSVFHNKFGEGVVLSLEGAGDEARAQVRFNRHGTKWLALNIAKLTPVND
>NZ_CP020046.1|WP_079419393.1|2840130_2841108_-|GMP-reductase
MHIFDYDNILLLPRKCRVESRSQCDPSTEFGGRRFRLPVVPANMKTVVDANVCRWLAANDYFYVMHRFDVDVAAFARQMRDAGLFVSISLGVKADDKALIDQLAAEGTGADYITIDIAHGHADSVQRMIAHIKHKLPQAFVVAGNIGTPEAVIDLEAWGADATKVGIGPGKVCITRMKTGFGTGGWQLSALKWCARVATKPIIADGGIREHGDIAKSVRFGASMVMIGSMLAGHEESPGQTVEVNGQLFKEYYGSASEFNKGTYRNVEGKRILEPLKGRLADTLREMEEDLQSSISYAGGLTLADIRKVNYIILGQNNAGEHVLM
>NZ_CP020046.1|WP_079419391.1|2838860_2840075_-|YbfB/YjiJ-family-MFS-transporter
MSITPHTPGQASAGQRLRVLFAGICALVLTVGLARFAYTPMLPIMHREAGLTDLAAGWLATFNYAGYITGAIVAASVGSLPQKFVMYRLGLVLAVVTTAALGFTDNTAAWAVLRFLSGLSSTAGLLLASGLALNWLIRHGHRPELGLHFTGLGLGIVISGLAVGAMMTHLTWAQQWMGLGLLGLVFFVPAWRWLPPPAAPMPTSSSVAHGTVAPPPRRWMALLIAVYFCAGFGYVISATFIVAILDKLPLLASRGGWVWVIVGVAAAPSSFLWDRVARSMGDTPALLLAFGLQTVSIVLPVATTDTALNLLSAVLYGGTFVGIVSLTLTLIGRHFPDNPAKAMARLTLSYGVAQIIAPAMAGSMAAHTGNYRGALEVTAAVMIAGMVLLGAMLRDARKTATARP
>NZ_CP020046.1|WP_079419389.1|2837849_2838851_+|ADP-glyceromanno-heptose-6-epimerase
MRVIVTGAAGFIGSNIVKGLNARGITDVIAVDNLTRGDKFHNLVDLQICDYIDKTVFFERFANGHYGKVEAVFHEGACSDTMEHDGRYMLDNNYRASKTLLDAGQKQGVRLLYASSAATYGASSVFRESPEFERPLNVYGYSKLLFDQVVRRVLPHATTQIAGFRYFNVYGPREQHKGRMASVAFHHFNQYREHGQVKLFGEYQGYGPGLQERDFVWIDDVVAVNLWFFDHPGKSGIFNLGSGRAQPFNDVACAVVNTLRLETGRAALGLAELVESGEIAYIPFPDALVGKYQCHTQADLSHLRAAGCTHHFATVEEGTAAYVRALSAAAGQP
>NZ_CP020046.1|WP_079419387.1|2836923_2837853_+|D-glycero-beta-D-manno-heptose-7-phosphate-kinase
MNAEQLAQSRVLIVGDVMLDRYWFGAVDRISPEAPVPVVRVQRDEDRVGGAANVALNAAVLGAQATLLSVVGADEPGRKLITLLVDTPIRNAMRQDPTLKTTVKLRVVSRQQQLIRLDFEQKPDHEVLAAMMERYEQELAFHDVVLLSDYGKGGLEHLDQMMNLARTQGKTILVDPKGRDYSRYAGATLLTPNRAELAQVVGDWGSEDDLTARAQGLRRKLSLKALLLTRSEEGMSLYTEAGELHIPTEAKEVYDVSGAGDTVIATVAVMLGAGLSMEDAVRTANRAAGIVVGKLGTASVTPKELWGQA
>NZ_CP020046.1|WP_079419385.1|2835754_2836927_+|lipopolysaccharide-assembly-protein-LapB
MEFDLWWLLVLPLMFALGWLASRVDLRQVGKERALRRDAPQAYYRGLNHLLNEQQDKAIDAFIEAMTADPDTVDLHFALGNLFRRRGEYERAVRVHQNLLARADLPREARERAQLALAQDFFKAGLLDRAETAYEDLRRSVYASQALTSLLQISERTQDWNKAIARAGELELRATGTYQRQIAQYWCELAAQHQAAGREPDAQQALDAALQASPQGVRPRMLRAQWAQQRGDLALALQSLESIDLVQPEFVALAAVQIAQLRQQLGQVQEGLAWLRQRLEQTPAIDLLDAVLLLDPDPASRARCAQGYLQSHRSLLALKRVLEHPTPGALVPEVATAMQGAVDNALRSRQRYRCAACGFEARQYFWHCPGCQGWETYPPRRLEELSLLGS
>NZ_CP020046.1|WP_079419383.1|2835444_2835765_+|DUF1049-domain-containing-protein
MRILSWFLRLIVFLLLFGLALNNLEPVTLHLLFGTEWRTPMIVLLLVVFVLGAVLGVLALLPSWLRHRRRGKVARNGEAAPTAAVATPTAQTDFPQHPIDRPIDGV
>NZ_CP020046.1|WP_079419381.1|2833805_2835323_-|AMP-nucleosidase
MSHRPQALHCPAPVADAIFSDPQAALDQVQAIYAAAIAHLRDKLAEFIAGTLPSGRVRACYPVVRVRIASVVRPDSRLAYGFVAAPGVYETSLTRPELFADYIRAQFQLLLDNHGVALEIGVGEQPIPLHFSFAGQAHVEGHLSLEQRQQLRDIFDLPDLAAMDDGIANGTHETPDGQPMPLALFTAPRVDYSLHRLQHYTGTAPEHFQNFVLFTNYQFYVDEFVRMAHALMDRAPGTASDDDVPYTAFVEPGNLITHRATPQSPAWTEGHASTRLPQMPAYHLIMPGHGGITLVNIGVGPANAKNITDHIAVLRPHAWIMLGHCAGLRNSQRLGDYVLAHGYVREDHVLDEELPLWVPIPPLAEVQQALEGAVADITQLHGYELKRVLRTGTVASTDNRNWELLPYPGPDRRFSQSRAIALDMESATVAANGFRFRVPYGTLLCVSDKPLHGELKLPGMADQFYRQQVEQHLRIGLRAIARLRQQTMGRLHSRKLRSFDEVAFQ
>NZ_CP020046.1|WP_079420653.1|2832752_2833796_+|phosphoribosylformylglycinamidine-cyclo-ligase
MQKTPLTYRDAGVDIDAGDALVDAIKPLAKRTLRDGVLAGIGGFGALFEVPKRYREPVLVSGTDGVGTKLKLAFEWDRHDTVGIDLVAMSVNDVLVQGAEPLFFLDYFACGKLAVQTATQVIGGVAKGCEQAGCALIGGETAEMPGMYPAGEYDLAGFAVGAVEKTGIIDGRSIAAGDRVIGLASSGAHSNGYSLVRKIIARSGADELPATLDGQDFRSAVMAPTRIYCKPVLKALAQHTIKGMAHITGGGLSENIPRVLPESVQCVLDPSTWGQTELFAWLQREGGVSADEMRRTFNCGVGFVMVVAAAEAEAVLATLRAEGETGWIIGEIQARPQAEAHQVRYTA
>NZ_CP020046.1|WP_079420651.1|2831490_2832549_-|AI-2E-family-transporter
MLLTPPVKNALLWLGIALVALWLIWLLGSILMPFLVGLTLAYVLHPLVERLKRRRIPRALGAAVALILAIGLFVGLFLLLVPVVSQIVPLIREKFPLLLQAIINWGTPLLARFDIHVQFDTASVQQTLTKFLSAHGEDWAALLLRSAGTGGMGLLVLLGNLALIPVVAFYLLLDWEPTLARVRSLIPPKHRDAVLLFFHDCDVILGQYLRGQLLVMLILAFYYSLGLVIAGFSLALPVGIFTGLAVFVPYVGFGLGLLLALIAGALQFLSWYGVIAVAIVYGIGQLIESLYVTPKFVGESIGLHPLLVIFILLAFGTLFGFWGILLALPAGAVLLVVARRLLAWYRESALFN
>NZ_CP020046.1|WP_079419399.1|2844058_2845147_+|IS5-family-transposase
MRGNQDFQGAMFSYISLEERVPQAHPLRKLRAVVDALLATMTGEFEAVYARRGRPSVPPEMLLKALLLQILFSIRSERQLVEAINYNLLYRWFVGLNIEDKVWDHSTFSANRERLFNEDLARAFFERVKLSAQWGKLASDEHFSVDGTLIEAWASHKSFKRKDDDSDTPPGRNPEVDFKGQERCNDTHESTTDADARLFKKSQGDKSRLCHMGHILMENRNGLIVDVQITHASGTAEREAALAMLNRRGNKNKRATVGADKGYDSKAFSKGCRKRKVTPHVAAKDKHSAVDGRIKRHEGYKTSLKVRKRIEEAFGWIKTVGGLAKTKLIGQVKLTGQALLCFATYNMVRMGSIGGWWDAHHA
>NZ_CP020046.1|WP_079419401.1|2845485_2847084_+|MCP-four-helix-bundle-domain-containing-protein
MFQNFKIGTRLGIGFGTMVALLIALAAIAVWSVQSMKRATDEATRTAWPQAHSVSEIRSAAIQMASDCRDLLLTQDAAERTQIQNKIQTSEQAAQADLQKLSGEVRSDRSRQLLAQTATRLQTFDQAMQFCATTQSTNGDAMGVFRQKVRPDEDAVRSDLRLLDDHFVGLFGVATQQADSAYGLALDSSLGAAIFAMVLAMVFGFALTRSITRPLGTAVTVARRVAAGDLTVQIGATTRDETGQLLDAMSGMVGRLTATLHSVRSAADLLSSASTQVSATSQSLAQATSEQAASIEETSATLEQSAASISQNADNARLTDSMAQQATQQAQQGGTAVQATVSAMKSIAERISVVDDIAYQTNMLALNAAIEAARAGAHGKGFAVVAAEVRKLAEKSQAAAKEIGDLASSSVGQAETAGRLLEQVVPAIAKTSDLVQEIKAASEEQSTGIQQINQAVSQLSGVTQQNASASEELAATAEEMNAQAQQLQDAVNQFKLNDAEPNGHASKPSARHSPSPVRVGARLASAEGFVRF
>NZ_CP020046.1|WP_079419403.1|2847301_2848246_-|AraC-family-transcriptional-regulator
MDPLSEVIRQSRPRSITVGATDVGGDVAIQFPAHEGAFLYCVESGTCWLQVQGDAEGIHMHAGDCFMLPSGRPFVMASDLALPPVDAAAVFDGRPNGSVAAYNGGGRCMMFAAHFEFDGGFSRFLFSELDTVVRVKEPEARATLREAIDQMIDELQRGRPGCEVVVDHLAHIALVKILRFHLAEVAHARPGWLYALADSRMGAAISAMHDAPSQRWTVASLAGVSAMSRTAFATRFKTTVGHAPMDYLTKLRMLIAAKRLAEPRARVSVVARELGYESESSFSAAFKRAMGLSPRRYTESAGRHAQTTEGQMSV
>NZ_CP020046.1|WP_079419404.1|2848398_2849517_+|zinc-binding-alcohol-dehydrogenase-family-protein
MSLNQAAWINAKGQPLSVSEAPMPRPGAGEILVRNRAIALNSFDGIVQTLGSMVTPWVSYPAILGSDVAGEVVVVGASVSRFKPGDRVLGLALGIDKIANRSVEGAFQKYVILRQEAATELPDSISFERAAVLPLAIATAACGLFLDDQLGLRAPSVQRSEPTGKTVLIWGGSTCVGSAAIQLAVAAGYEVVTTASPKNFDYVRGLGASYVFDYNDTDVVVTMAKHLADRDMAGALAIAVGSGASCIDVMSRCRGQRMVSMASSPLPINDAPLTRQFFWKLTRLPQLAAGFLGLAIRARVRGVATRAIWGTALMKGTLGKQIFNEFLGPALASGRLVPAPKPLVVGHSLEALPEALALLRRGVSASKVVVSL
>NZ_CP020046.1|WP_079419406.1|2849779_2850790_-|class-1-fructose-bisphosphatase
MTQSVNLTRYLVEQEREHGAITPHLRLLVEVVARACKRISIAVNKGALGDVLGSAGTGNVQGEVQKKLDVIANDVLIHANEWGGHLAAMASEEMDTVFPVSEHYPRGEYLLLFDPLDGSSNIDVDVTIGTIFSVLQLPGNVGEVSEAHFLQAGARQVAAGYCVYGPQTQLVLTVGHGVAVFTLDREQGSFVLTQDGLKIPASTSEFSINMSNLRHWAPPVKRYIDECLQGKDGPRGRDFNMRWVGSMVADVHRILMRGGVFLYPWDQREPNKPGKLRLLYEANPMSLLVEQAGGAATNGKQRILDIAPSSLHERCSVMLGSSEEVELLQRYHAESA
>NZ_CP020046.1|WP_079419408.1|2850825_2853498_-|aminopeptidase-N
MTAKPDTPARITRLAEYTPPAYAIDSVHLRFDLDPAKTRVHSRMAVRRVDGAAESAPLVLDGEDITLLTLKVNGEFVAFRQDGNTLVLDKLPETFTLEIETLNVPQANTQLAGLYMSGGAFFTQCEAEGFRRITYWPDRPDVMSRFHVTLRADKTQYPVLLSNGNLVSQADLDGGRHEAVWDDPFPKPCYLFALVGGNLVCREQTVRAASGKTHLLQVYVRAGDLDKTEHAMESLIKSIAWDEQRFGLSLDLDRFMIVAVSDFNMGAMENKGLNIFNTKYVLANPATATDVDYDGIESVVGHEYFHNWTGDRITCRDWFQLSLKEGLTVFRDQEFSQDLAAASGGESARAVKRIEDVRVLRTAQFSEDAGPMAHPVRPEQYQAIDNFYTATVYEKGAEVVRMMQTLVGRSGFRKGMDLYFQRFDGQAVTCDDFAQAMADANPESALAAHLIAFKRWYSQAGTPRLHASGALDSAARTYTLTLRQTLPDTPGQSGKQPQVIPVAMGLLDARGGALPLWLQGQDKGTSTVLVLTASEQTFVFEQIDADTVTPSLLRGFSAPVILDYAYTDAELLHLLAHDADPFNRWEAAQRLTLSRVLAAVRGEALRLDAPYLDALRAVLRDPKLDPAFKDLLLTPPGEAYIAEQLEEVDPPRIHRARQALRTALAQELEQDWQTLWDTLAPEGGYSPDFASAGRRALRNQAQAHWCELGQATWLGRVYQRVKDADNMTDRFAALTALVHVGADLAKPALERFATQFAEEPLVMDKWFALQASAPDRDGLQLERVRALMRHPAFSIHNPNRARSVLFAYCQANPGAFHRADGAGYAFWAEQVQALDAINPQVAARLARALDRWRKLAPPYRDAAQQALRTVADSAGLSSDTREIIERALAN
>NZ_CP020046.1|WP_154048498.1|2853545_2854650_-|peptide-chain-release-factor-2
MEAERLNAITNRIADLQQRVQALRGYLDFDAKSSRLMEVAGALEDPQVWNDPKRAQELGRERKSLEVVVLGLENLTTALADHSELFEMSREEGDDATCEAIETDVEKSAAEVEALEFRRMFSNPLDPSNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKVEVMEETEGDVAGIRSATIKIEGDYAYGQLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDDSIEIDINPADVRTDTFRASGAGGQHINKTDSAVRLTHLPTGIVVQCQNDRSQHRNRDEAWQMLRSRLYEHEMRKRMAEQQKLESSKSDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDEFITASLKSGL
>NZ_CP020046.1|WP_079419410.1|2854812_2855937_-|molecular-chaperone-DnaJ
MAKRDYYDVLGVSKNASEDDIKKAYRKLAMKHHPDRNQGNKDSEEQFKVVKEAYECLCDPQKRAAYDQYGHAGVDPSAGGFGGGAGGFGDFGNIFDEIFGGGRRGGGGGPQVYRGNDLSYSLEISLEDAAHGVSKSLRIPGWEECGTCHGSGAKPGTKPITCTTCHGSGQVAQRMGPFAMQQTCPTCHGTGKLIPEPCTACHGRGRIQKQKTLEVQIPAGIDSGMRIRSTGNGEPGVNGGPAGDLYVEIHIKQHPVFERDGDDLHCHVPVSMATAALGGGIDVPTLGGKAEIDLPEGTQAGKTFRLRGKGIKGLRSNYPGDLYCHVTVETPVKLNEEQKRLLRELDESLKKGGDRHSPQAKSWFDKAKEFFKPV
>NZ_CP020046.1|WP_079419412.1|2856032_2857976_-|molecular-chaperone-DnaK
MAKIIGIDLGTTNSCVAIMEGNTPKVIENSEGARTTPSIVAYMEDGEILVGASAKRQSVTNPRNTLYAVKRLIGRKFAEKEVQKDIDLMPYSIVKADNGDAWVEVRGKKLAPPQISAEVLRKMKKTAEDYLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFGLDKHGKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIIGEFKKEQGVDLSRDVLALQRLKDAAEKAKIELSSSTQTEINLPYITADASGPKHLNLKLTRAKLESLVEELIERTIAPCRTAITDAGVKVGDIDDVILVGGMTRMPKVQDKVKEFFGKEPRKDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMITKNTTVPTKHAQVYSTADDNQPAVTIKVYQGEREMAAGNKLLGEFNLEGIPPAPRGTPQIEVTFDIDANGILHVSAKDKGTGKENKITIKANSGLSEEEVQRMVRDAEVNAEEDHKKRELVDARNQADAAVHSVRKSLGEYGDKLDAGEKSSIEEALKAAEEAIKSEDKADIEAKTSALLTASQKLGEKMYAGQAGEQAAAGAAAGGAAGAGAQAAGDDTVVDAEFKEVKDGKA
>NZ_CP020046.1|WP_079419413.1|2858086_2858617_-|nucleotide-exchange-factor-GrpE
MQTDPQTPPSNDRQATEGAPQDGSPETALNDALSQAQAEITALNDQLLRARAEVENIRRRAEEETAKARKFAVEGFAESLLPVKDSLEAALADTSGKPEVLKQGVELTLSQLKSAFERHRLQEIAPAPGEKFDPALHQAISVQPADQPSGTVATVLQKGYRLAERTLRPALITVAQ

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Crispr_ID: NZ_CP020046_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020046_13

2974048-2974141

Orphan

Consensus_repeat	Method
AAACTGCGCTGCGCGTGATCTGCGTAAGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020046_13

>merge|NZ_CP020046|13|2974048-2974141|CRISPRCasFinder
AAACTGCGCTGCGCGTGATCTGCGTAAGCCCTCCCAGCCTCCCCCACATCGTGGGGGAGGAGTAAACAGCGCTGCGCGTGATCTGCGTAAGCCC

>NZ_CP020046|13|13|2974048-2974141|CRISPRCasFinder
AAACTGCGCTGCGCGTGATCTGCGTAAGCCC	TCCCAGCCTCCCCCACATCGTGGGGGAGGAGT
AAACAGCGCTGCGCGTGATCTGCGTAAGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020046.1\|WP_079419596.1\|2961215_2961707_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP020046.1\|WP_079419632.1\|2983158_2983956_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP020046.1\|WP_079419620.1\|2978299_2978881_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP020046.1\|WP_079419602.1\|2963086_2964427_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP020046.1\|WP_079419598.1\|2961848_2962748_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP020046.1\|WP_079419622.1\|2978955_2980302_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP020046.1\|WP_079419608.1\|2967481_2968030_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP020046.1\|WP_079419628.1\|2981904_2982954_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP020046.1\|WP_079419610.1\|2968235_2969117_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP020046.1\|WP_079419604.1\|2964737_2965970_+\|cystathionine-beta-lyase	unknown	unknown	gnl\|CDD\|180810
NZ_CP020046.1\|WP_079419616.1\|2974279_2974744_+\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|376876
NZ_CP020046.1\|WP_079420665.1\|2972724_2973462_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP020046.1\|WP_079419612.1\|2969186_2972681_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NZ_CP020046.1\|WP_079419618.1\|2977024_2978239_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|226587
NZ_CP020046.1\|WP_154048501.1\|2975309_2977013_+\|DUF1800-family-protein	unknown	unknown	gnl\|CDD\|378055
NZ_CP020046.1\|WP_079419606.1\|2965982_2967308_+\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP020046.1\|WP_079419624.1\|2980831_2981452_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP020046.1\|WP_079419614.1\|2973458_2973941_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP020046.1\|WP_079419626.1\|2981485_2981905_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP020046.1\|WP_079419630.1\|2982934_2983150_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391

Protein	Function_ID	Function_description	E-value
NZ_CP020046.1\|WP_079419596.1\|2961215_2961707_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	4.24511e-21
NZ_CP020046.1\|WP_079419632.1\|2983158_2983956_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	2.69496e-137
NZ_CP020046.1\|WP_079419620.1\|2978299_2978881_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	6.83494e-102
NZ_CP020046.1\|WP_079419602.1\|2963086_2964427_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	7.7674e-130
NZ_CP020046.1\|WP_079419598.1\|2961848_2962748_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.46533e-42
NZ_CP020046.1\|WP_079419622.1\|2978955_2980302_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	8.50976e-164
NZ_CP020046.1\|WP_079419608.1\|2967481_2968030_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	8.72912e-07
NZ_CP020046.1\|WP_079419628.1\|2981904_2982954_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	2.79222e-122
NZ_CP020046.1\|WP_079419610.1\|2968235_2969117_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.05667e-76
NZ_CP020046.1\|WP_079419604.1\|2964737_2965970_+\|cystathionine-beta-lyase	gnl\|CDD\|180810	PRK07050, PRK07050, cystathionine beta-lyase; Provisional.	0
NZ_CP020046.1\|WP_079419616.1\|2974279_2974744_+\|DUF192-domain-containing-protein	gnl\|CDD\|376876	pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures have been solved for members of this large (>500 members) family of bacterial proteins present mostly in environmental bacteria and metagenomes (distant homologs are also present in several Plasmodium species). TOPSAN analysis for Structure 3pjy shows that there is much similarity with the other solved structure, Structure 3m7a, solved for UniProt:Q2GA55 (Saro_0823), a homolog of Thermotoga maritima TM1668, UniProt:Q9X1Z6., The homolog in Caulobacter crescentus (CC1388), UniProt:Q9A8G6, is associated with CspD, a cold shock protein (CC1387), UniProt:Q9A8G7. However, the genomic context of UniProt:Q2GA55 is most conserved with a putative xylose isomerase, suggesting a possible role in extracellular sugar processing. Saro_0821, UniProt:Q2GA57, is annotated as an AMP-dependent synthetase and ligase. Structure 3m7a structure corresponds to the C-terminal (27-165) fragment of the YP_496102 (Saro_0823) protein and it is structurally unique, as the best hits from Dali have a Z-score of 3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely candidate for a new fold. Interestingly, many of the top Dali hits are involved in sugar metabolism. There are no obvious active site-like cavities on the protein surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).	5.77939e-46
NZ_CP020046.1\|WP_079420665.1\|2972724_2973462_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.24163e-92
NZ_CP020046.1\|WP_079419612.1\|2969186_2972681_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP020046.1\|WP_079419618.1\|2977024_2978239_+\|DUF1501-domain-containing-protein	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	6.90628e-49
NZ_CP020046.1\|WP_154048501.1\|2975309_2977013_+\|DUF1800-family-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	1.13202e-133
NZ_CP020046.1\|WP_079419606.1\|2965982_2967308_+\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	1.3612e-95
NZ_CP020046.1\|WP_079419624.1\|2980831_2981452_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	3.23073e-45
NZ_CP020046.1\|WP_079419614.1\|2973458_2973941_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.21239e-100
NZ_CP020046.1\|WP_079419626.1\|2981485_2981905_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.3311e-28
NZ_CP020046.1\|WP_079419630.1\|2982934_2983150_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	2.52205e-19

>NZ_CP020046.1|WP_079419614.1|2973458_2973941_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTQIRIGEGYDVHALVPGRKLIIGGVTIPYHLGLLGHSDADVLLHAITDALLGAAGLGDIGQHFPDTDARFKGADSGELLQQARQSVQARGWSLVNVDCTVMAQAPKLAPHRDAIRQRIATLLAVELEQVNVKGKTTERLGFVGRGEGIAASAVCLLQRD
>NZ_CP020046.1|WP_079420665.1|2972724_2973462_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MQMPPASLVRPVSCHAVIPSAGAGSRLPGDAPKQYRRLLGEAVVQHTVRAFLQTPRIASVSVVVQEGDAWAADSLQADARLQRVPRGGATRAHSVLGGLEALLASGADVSDWALVHDAARCCITPELIDRLIDACLPDDVGGLLALPLPDTLKAADAQGRVARTEPREGRWLAQTPQMFRIGALRCALQTALADHVALTDEASAMERQGAHPLLVTGASWNFKITYPQDLELAQALLAARTGASP
>NZ_CP020046.1|WP_079419612.1|2969186_2972681_-|transcription-repair-coupling-factor
MSIVHALRAQVPALKPGQRLSWPLPAGSADALLLAELCAPRDDAAPWLIVTESASDAQRLLGEMPWFAPQLRVGLLPDWETLPYDSFSPHQDLISERLATLWAIHNRQIDVVIAPANTAIQRLAPAEFLAAYTFDFRQGEALNEAALRAQLVLAGYNHVSQVMAPGEYAVRGGLIDLHPMGSPVPYRVDLFGDTIDAIQAFDPDTQRSLYPVKEVRLLPGREFPLDDAAQKRFRARWREVFEGDPSRSPLYKDMGNGVAGPGIEYYLPLFFEHTATLPDYLGERTRVVLHGDIALAIQKFWADTQERHRLLRHDPERPALAPDQLFLNEEAFFSRIKPLAQLALRPRADAGPSPDAADKPTSSALPDISADRRATRPLARLAQWLEEGRAQHRRTLLLAESAGRRETLRELLQESGLSAQPAESWEDFVQGTTGFGLAVGPLARGFSLPADRLAVLTETELFALNPAQRRRRKQEQASNVDALIHDLAELQPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHLVYANDAVLYVPVSQLHLIGRYSGAAQEDAPLHTLGSGQWDKARRKAAEQVRDAAAELLNIYARRAAHEGHAFRYAPQDYEAFAASFGFEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRSAFVAVMGGRQVAVLAPTTLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTHKLLSPTVKFDRLGLVIVDEEHRFGVRHKEALKALRASVDLLTLTATPIPRTLGMALEGLRDLSVIATAPQKRLAIKTFVRSESGAVMREAMLREIKRGGQVYFLHNEVETIENRKRQLEELVPEARIEIAHGQMPERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIIMARADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQAGQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGEQQSGNMQEIGFQLYNDMLTEAVKALRAGREPDLLNPLGVTTEINLHVPALLPNDYCGDVHARLSLYKRLASATHSAQLDSVAEEIVDRFGRLPPAAQALVDTHRLRLIAQGYGITKIDASEDVAILHFRKDAPVDAARIIDLIQKNRHIKLTGNDRLRIERPTKDAAQRAQLIRDTLKQLGAPRPEVAIV
>NZ_CP020046.1|WP_079419610.1|2968235_2969117_-|phosphoserine-phosphatase-SerB
MYHLVVQRHTSALSQDNLDHLCHIAAPVSLEKFADDHGPNRGHNAARLRDIRSAGPGMRRTLDSYCREHHIDWAIVPAGLHLGDFKLLAMDMDSTLINIETVDEIGAAVGKKDEIAAITAAAMRGEITDYATSLRQRVALLGGVPLTALDKLYTDTLRLNPGAETLLAAAKAAGLKTQLVTGGFTHFTDRLKQRLGFDRVAANVLGVKGDALDGTLNGDIIDGEAKKKAVLAFCSELGCDPGEVLVLGDGANDLPMMHAVGFSVAYHAKPKVREAATAAIDHGGLDSLLHWFE
>NZ_CP020046.1|WP_079419608.1|2967481_2968030_+|glycine-zipper-2TM-domain-containing-protein
MIRRIGLLGGVAMMVVLGGCAVVPPPAPTAYAVPQQPAYAGVYVAEPQAYAPQPAYAPPPTYVQPPPTYAPQPGYAPAPVAQSALPGAALGAVAGGLVGSRFGAGNGRTAMAATGAALGAVVGANAANPYATQITPGTVIGGVVGGLVGSRFGHGNGKTAAAALGAAVGAMAGSQYPAVGLP
>NZ_CP020046.1|WP_079419606.1|2965982_2967308_+|DUF2254-domain-containing-protein
MSTPKPALWQRLRPDWDPRRLALWRARLREQLWFRPAWWSALAVVVALLASAADHLLPDRFVPGIDPSALKTILTVIASSMLAVSTFSLSILVSAFASASSGATPRATRLVRANDDAQTAIAAFLSTFIYSVVALTALGIGYYGSAGRFVLLLVTLAVLAHLIFRLLAWVNTLSQIGRLSHTMQTVEQAADAAYAQYRADPAMGGVLAQPGASPAGVVITAASVGYLRSVDMAALDRVAERLGGTVHLRERPGVYAHPARPLAVLSGASPDRQALEDLRAAFDVARERDMLQDPRHGLIVLSEIALRALSPAVNDPGTGIAILGVLGRVLIAHPPQAGATPQDGKPPRYPRVTVPAIDEADFIQDAFGPLSRDAAGLLEVATRLQKTLAAVALNTGGKLRQQAIAQATLAAEYAAVRLDLDSEKAQIATLARELRTATDAG
>NZ_CP020046.1|WP_079419604.1|2964737_2965970_+|cystathionine-beta-lyase
MSSQQESQLDQKPLLPSEKLTLSTRLQHHPYQAPAGFEAVEPGVHHASTVIFPDVATLRARDWRSKAGYTYGLHGTPTTFVLEERLAALDGGRHCVLCPSGLSAIALVDLALLQQGDTVLLPSNVYGPSREMAERFLGTWGIEHRLYDATCTPDELAALITPQTKLLWLEAPGSVTMEMPDLRGLIGVARQHGVRTAIDATWAAGIALQPFDLGVDVVMQALTKYQSGGADVLMGSVTTRDDALHERLLLTHMRLGLGVSGDDVARVLRGLHTLPLRYAAHDASARRIAQWMQDQPAVTQVLHPALPGCPGHAHWQRDCTAAGGLFSVVFDARHPSAQIDAFVDALKLFKIGYSWGGPVSLAVPYDVQLMRPSSHWPHAGGLVRLAIGLEDPQDLIDDLARALGAAGMAS
>NZ_CP020046.1|WP_079419602.1|2963086_2964427_-|HlyC/CorC-family-transporter
MEVLILFGLILLNGLFAMSEIALVTARRARLTALAEAGNDNARTALHLSEQPTRLLSTVQIGITSISVLNGILGEAAFSAPVADWLVSLGMLPKFAGVTATAIVVLIITFASIVIGELVPKRLGQLAPERIAMVMARPMTWIARAASPFVKLLSISTDLLLTLLRVRHDTMPQMTEAEINEVLEEGSDAGVIEEQEHEMVRNVFRLDDRQIASLMTPRNEIEFLDVDQPLSENLNKIAQSTHSRFPLVKRGLEEVVGLVSTKELLGRFIRREGIDDLSKAAIPATFVPESLTGLELLQTFRQSAEHTAMVIDEYGQTMGIVTVQDLMEAIAGEFKSHPSEEPWAMQREDGSWLMDGLITVDDLKTRLNLAHLPDEEKQRYNTLSGMLMLLLARLPATGDIVHWGDWTFEIVDMDGKRIDKVLVQRKPPEARDEFSDAPEGRESRPY
>NZ_CP020046.1|WP_079419598.1|2961848_2962748_-|AEC-family-transporter
MLHDALLLLPDFLLIVLGLALVRLTALNRSVWDGVERLVYFVLFPALLFSTTSRGHASLGDTRDLVMADAAMLLIGIALAYAAFWARKADRRCVASGVQTAFRFNSYIALAVADRVGGPPAVSLVAVLIALGVPLCNVAAVWALAQHAQSNVWRELLRNPLLIATLSGLTVHALGWTLPEPIVPVLDRLGQASIALGLMTVGAGLQWRGLHRELPVGLWFLSIRHVLLPLVAMALSWGLALPPLQALVLVLFAAMPTASSAYVLASRMGGDGPYVAGLVSLSTVLGAISIPLFLAVMRH
>NZ_CP020046.1|WP_079419596.1|2961215_2961707_-|histidine-phosphatase-family-protein
MPNFHVIFWRHAEAEEAPGSVQGDEADLRRNLTKQGRRDAALVAGWIKSQLPKPWTVISSPAQRARQTAQHLNDYAGTDPRLRPGAAMEDLLSVVSEFPREGGALIVVGHQPTLGRAGLYWITGCDQQFSMRKSGLLWAVERSREAGIQRSLRACISADLLDN
>NZ_CP020046.1|WP_079419616.1|2974279_2974744_+|DUF192-domain-containing-protein
MTPHRFLRLFFLLLGLLGATPLWAAQTEVNTGLPQVRLQMGRHALTAEVAATAEQQQTGLMNRRSLAANHGMVFVFAQTQPVCMWMKNTLIPLSVAFITAQGRIVNIADMQPQTEDVHCAQTEVRYALEAPLHWFAQRGVRPGMSVLGLSAAGR
>NZ_CP020046.1|WP_154048501.1|2975309_2977013_+|DUF1800-family-protein
MISALSSPRNPSRRRWLGRLAALGFGTAVLDAPAMAQMAASPDVAALAPAGRLDAAAQADPVAFLDRVGWGASAGQLQALARLGATAYLHELLQPSADPALPPDWAAQLAALPVNQPLETLIPPIVREERAIRQARKDDPQADAADAEARLKAINRFKYDLAQQAAAQQVVLGLYAQNGLQQRLSWFWLNHFNVFRSGNIGPMMGDYTQRVIAPHALGRFRDLLRATMFSPQMLLYLNNAQNARGHVNENYAREVMELHTLGVGSGYTQADVTNLARALTGLGVDLLDKPVRVRPALRADLWRQGLVVFNPARHDADPKTVLGHTLQGRGLDEIDEVIALLADHPATARHISTQLAQYFVADAPPPALVESMTQRWRATGGQIAEVLRAMFTSPAFIASLRQPQFKDPTRYVLSALRASLGDEPIRNPQPVLGMLARLGEPLFGRQTPDGYPLDAGAWDGSGQLTARFEVARQIGGGASALFAPPPDFMRQSAPPATADMAQTMDAPLADHARAKPPHRPPPDLARSAVYLAQQNQLSTATLRALAQADNRLSWNTLWLSSPEFMNA
>NZ_CP020046.1|WP_079419618.1|2977024_2978239_+|DUF1501-domain-containing-protein
MQRRHFLQTAAAATLSTPMSRLWAAPAAQGQPKFILVFLRGAYDATNLLVPHANSFYYESRPHIAVPRPGEGADAAIALNADWALHPALRESMLPLWQAGQLAFVPFAGTRDMTRSHFETQDHIELGQGPQTRDFNDGFLNRLVQQIGGRAQPMAFTAQLPLSLRGTHRVPNLAIAQAGHTGIDDRQRALIESMWSHSAQGAAVREGFAVHQTVAQDMQASGWQAEMVAASRGAVAPKGFVAEAVRIGGLMRDSFNVGFIDVGGWDTHVNEATDNGARGQLADKLAALGQGLAGLAQAMGPAWHHTTVVVLSEFGRTFRENGNRGTDHGHGTVYWVLGGAVRGGRIAGEQIVQSPSTLNQNRDDPVLTEDRDLLGGLFQRLWGLRPSQIEAVFPGSRPVDLQLV
>NZ_CP020046.1|WP_079419620.1|2978299_2978881_-|superoxide-dismutase-[Fe]
MQHELPPLPFAPDALAPHMSRETLEYHHGKHHQAYVNNLNNLIKGTEFEAMALEDIIKKSSGGVFNNSAQVWNHTFFWNCLKPNGGGEPKGALATAINAKWGSFAAFKEAFHKSAVGNFGSGWTWLVKKADGSVDIVNTGNAATPLTSADKALLTVDVWEHAYYVDFRNRRPDFVTTFLDKLANWDFAEKNFG
>NZ_CP020046.1|WP_079419622.1|2978955_2980302_-|exodeoxyribonuclease-VII-large-subunit
MWTVSALAQAFSDALNARFNSLTVRGEVSGLVRAASGHQYFNLKDGAAQLRCVWFRQRAGHAAIALRDGLSVRLRATVAIYEPRGDLQLIVESVQPDGEGALLEAFLRLKAKLQGEGLFDAGRKRPMPVMPRAVGVITSLQAAALRDVLTTLRRRSPQVRVVVYPASVQGTAAPAELRAALQHAQTRQDVDVILLVRGGGSLDDLWAFNDEALVRAIAACALPLVSGVGHETDFTLADFAADLRAPTPTAAAELAVPAQATLADALNHAAHRLGSAMRRQLQREQQRCDRLALRWPQSAALLAAPQRRLAQLQWRLQQGLRGLPRLHTQRLQLLQQGLARALRQRLPQERERLDRWERVLPDTLSRQLADAARRLDRAAQHLQLLSPRATLARGYLLGMDGSGRVLRDLSQLDPRAPLLLADAQRALRLDIARIDAQPHPLGTDIPPT
>NZ_CP020046.1|WP_079419624.1|2980831_2981452_+|MotA/TolQ/ExbB-proton-channel-family-protein
MLHMVEAAGWPIWPLILCSIVALAVIFERLASLRRARILPAKLLDEALNVSAKQLPAPDVIDKLERNSPLGAVLASGFRSVARPHASAVGLQEDLENAGRHQVYRLQKYLNALATVASAAPLLGLLGTVVGMIEIFGSQSTAGTDPTVLAHGISVALYNTALGLIVAVPSLIFYRYFRSRVDDYTVELEQAARRLATHLQSYLPRR
>NZ_CP020046.1|WP_079419626.1|2981485_2981905_+|biopolymer-transporter-ExbD
MNFKRQTTEDPEVNLIPLIDVLLVILIFLMISTTYSKFTELKITLPTADAEKLQNHPQEIIVAVSSGGEYAVNKQVLPGRTVSALTQSLLDAAKGKSDTMVVISADAQATQQSVVNVMEAARAAGLSRLTFATQRSPGS
>NZ_CP020046.1|WP_079419628.1|2981904_2982954_+|tetraacyldisaccharide-4'-kinase
MAPSTAPSGWPAWWLRRSLLSWMLWPLSLLFAGLTALRRGLYRLGLLRQQSAGVPVVVVGNLTVGGAGKTPLIVALAQGLQQAGWRPGIVSRGYGRRAAEGDAPIRVDAQSDPARCGDEPVLLARLTRCPVVVGRRRAQAALELRAACPDVDVILSDDGLQHLALARDVELVVVDQRRWGNGLLLPAGPLRESPARRRDATLGPETVLRQIDGGGARFALVRSLGDITHLTSGLSLSPSQFARRFGGQPLGAVAGIGHPAQFFAMLHSLGLSVQTRALGDHQPLATDALEGFPPDCPVLLTEKDAIKSGPLPPALRERLWVVGLRLQSPPDLLPWLQQQLEKARGLPTA
>NZ_CP020046.1|WP_079419630.1|2982934_2983150_+|Trm112-family-protein
MDSRLLDLLVCPICKGPLQFEAAAQELICPRDKLAYPVRDDIPLMLVDLARDMTLPADPGPAPAVPAEPAA
>NZ_CP020046.1|WP_079419632.1|2983158_2983956_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MDRDAAFWVLIPARLASTRLPNKPLADLGGAPMVVRVAQRVAQSGARDVVVACDSPEIARACAAHGVRAVLTRVDHASGTDRLAEAAGLLELPEEAIVVNVQGDEPLIEPALPAACAALLQRHPSIPMATCAHPITDEGEIFNPNVVKVVTDAQGRALYFSRAPIPWQRDAYATDAGPSGSGWTLQTSPPPHPVLRHIGLYAYRHRFLRDYAAMAEAPLEQAEALEQLRALWHGHAIAVHVTQDAPGPGVDTPADLERVRGLWPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020046_6	6.1\|1084873\|28\|NZ_CP020046\|CRISPRCasFinder	1084873-1084900	28	NZ_CP020046.1	1081214-1081241	0	1.0
NZ_CP020046_6	6.1\|1084873\|28\|NZ_CP020046\|CRISPRCasFinder	1084873-1084900	28	NZ_CP020046.1	1081277-1081304	0	1.0
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1103344-1103377	0	1.0
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1429176-1429209	0	1.0
NZ_CP020046_6	6.1\|1084873\|28\|NZ_CP020046\|CRISPRCasFinder	1084873-1084900	28	NZ_CP020046.1	1121572-1121599	1	0.964
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	295987-296020	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1887968-1888001	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1896734-1896767	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	2008861-2008894	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	2008924-2008957	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	2962934-2962967	1	0.971
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	282842-282875	2	0.941
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1056339-1056372	2	0.941
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1070555-1070588	2	0.941
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	1324578-1324611	2	0.941
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	2053761-2053794	2	0.941
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NZ_CP020046.1	2974016-2974049	2	0.941
NZ_CP020046_13	13.1\|2974079\|32\|NZ_CP020046\|CRISPRCasFinder	2974079-2974110	32	NZ_CP020046.1	1070555-1070586	2	0.938
NZ_CP020046_13	13.1\|2974079\|32\|NZ_CP020046\|CRISPRCasFinder	2974079-2974110	32	NZ_CP020046.1	1161721-1161752	2	0.938

1. spacer 6.1|1084873|28|NZ_CP020046|CRISPRCasFinder matches to position: 1081214-1081241, mismatch: 0, identity: 1.0

catacgcagatcgcgcgcagcgctattt	CRISPR spacer
catacgcagatcgcgcgcagcgctattt	Protospacer
****************************

2. spacer 6.1|1084873|28|NZ_CP020046|CRISPRCasFinder matches to position: 1081277-1081304, mismatch: 0, identity: 1.0

catacgcagatcgcgcgcagcgctattt	CRISPR spacer
catacgcagatcgcgcgcagcgctattt	Protospacer
****************************

3. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1103344-1103377, mismatch: 0, identity: 1.0

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacggcgtgggggaggagaaa	Protospacer
**********************************

4. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1429176-1429209, mismatch: 0, identity: 1.0

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacggcgtgggggaggagaaa	Protospacer
**********************************

5. spacer 6.1|1084873|28|NZ_CP020046|CRISPRCasFinder matches to position: 1121572-1121599, mismatch: 1, identity: 0.964

catacgcagatcgcgcgcagcgctattt	CRISPR spacer
catacgcagatcgcgcgcagcgctgttt	Protospacer
************************.***

6. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 295987-296020, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacggcgtgggagaggagaaa	Protospacer
************************.*********

7. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1887968-1888001, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgccgtgggggaggagaaa	Protospacer
***************** ****************

8. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1896734-1896767, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgtcgtgggggaggagaaa	Protospacer
***************** ****************

9. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 2008861-2008894, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgacgtgggggaggagaaa	Protospacer
*****************.****************

10. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 2008924-2008957, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgacgtgggggaggagaaa	Protospacer
*****************.****************

11. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 2962934-2962967, mismatch: 1, identity: 0.971

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgtcgtgggggaggagaaa	Protospacer
***************** ****************

12. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 282842-282875, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgacgtgggggaggagtaa	Protospacer
*****************.************* **

13. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1056339-1056372, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgctgtgggggaggagaaa	Protospacer
***************** .***************

14. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1070555-1070588, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacagcgtgggggaggagtaa	Protospacer
****************.************** **

15. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 1324578-1324611, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacgctgtgggggaggagaaa	Protospacer
***************** .***************

16. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 2053761-2053794, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccaacctcccccacggtgtgggggaggagcaa	Protospacer
******************.************ **

17. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to position: 2974016-2974049, mismatch: 2, identity: 0.941

tcccaacctcccccacggcgtgggggaggagaaa	CRISPR spacer
tcccagcctcccccacgtcgtgggggaggagaaa	Protospacer
*****.*********** ****************

18. spacer 13.1|2974079|32|NZ_CP020046|CRISPRCasFinder matches to position: 1070555-1070586, mismatch: 2, identity: 0.938

tcccagcctcccccacatcgtgggggaggagt	CRISPR spacer
tcccaacctcccccacagcgtgggggaggagt	Protospacer
*****.*********** **************

19. spacer 13.1|2974079|32|NZ_CP020046|CRISPRCasFinder matches to position: 1161721-1161752, mismatch: 2, identity: 0.938

tcccagcctcccccacatcgtgggggaggagt	CRISPR spacer
tcccagcctcccccactccgtgggggaggagt	Protospacer
**************** .**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020046_2	2.1\|980879\|27\|NZ_CP020046\|CRISPRCasFinder	980879-980905	27	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1846721-1846747	5	0.815
NZ_CP020046_6	6.1\|1084873\|28\|NZ_CP020046\|CRISPRCasFinder	1084873-1084900	28	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	20457-20484	6	0.786
NZ_CP020046_6	6.1\|1084873\|28\|NZ_CP020046\|CRISPRCasFinder	1084873-1084900	28	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	19001-19028	7	0.75
NZ_CP020046_1	1.1\|627802\|33\|NZ_CP020046\|CRISPRCasFinder	627802-627834	33	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	58078-58110	8	0.758
NZ_CP020046_1	1.1\|627802\|33\|NZ_CP020046\|CRISPRCasFinder	627802-627834	33	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	58084-58116	10	0.697
NZ_CP020046_12	12.1\|2843747\|34\|NZ_CP020046\|CRISPRCasFinder	2843747-2843780	34	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	58081-58114	10	0.706

1. spacer 2.1|980879|27|NZ_CP020046|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 5, identity: 0.815

agccctcccggcctcccccacggggtg	CRISPR spacer
ccccctcccggcctcccccgctgggcg	Protospacer
  *****************.* ***.*

2. spacer 6.1|1084873|28|NZ_CP020046|CRISPRCasFinder matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 6, identity: 0.786

catacgcagatcgcgcgcagcgctattt	CRISPR spacer
catatgcagatcacgcgcagcgcgtgct	Protospacer
****.*******.**********   .*

3. spacer 6.1|1084873|28|NZ_CP020046|CRISPRCasFinder matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 7, identity: 0.75

catacgcagatcgcgcgcagcgctattt	CRISPR spacer
gcgacgcagatcgagcgcagcgcaatgg	Protospacer
   ********** ********* **

4. spacer 1.1|627802|33|NZ_CP020046|CRISPRCasFinder matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 8, identity: 0.758

tgtttact---cctcccccacagagtgggggaggtc	CRISPR spacer
---ccacctgacctcccccacccagtgggggaggtc	Protospacer
   ..**.   **********  *************

5. spacer 1.1|627802|33|NZ_CP020046|CRISPRCasFinder matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 10, identity: 0.697

tgtttactcctcccccacagagtgggggaggtc------	CRISPR spacer
------gacctcccccacccagtgggggaggtcaggtgg	Protospacer
        **********  *************

6. spacer 12.1|2843747|34|NZ_CP020046|CRISPRCasFinder matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 10, identity: 0.706

tcccaacctcccccacggcgtgggggaggagaaa-	CRISPR spacer
-cctgacctcccccacccagtgggggaggtcaggt	Protospacer
 **..***********   **********  *..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

643095 : 688969

Erysipelothrix_phage(23.08%)

protease,transposase,capsid,integrase

attL 650591:650609|attR 692866:692884

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079415936.1\|643095_643374_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_079415939.1\|643555_645049_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.0e-22	25.6
WP_079415941.1\|645218_645962_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_079415943.1\|646152_647028_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_079415945.1\|647053_647506_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_079415947.1\|647548_648538_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_079415949.1\|648621_649191_+	DUF2946 family protein	NA	NA	NA	NA
WP_079415951.1\|649266_649884_-	cytochrome c5 family protein	NA	NA	NA	NA
650591:650609	attL	NA	NA	NA	NA
WP_079415954.1\|650768_651953_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.3e-86	47.5
WP_079415956.1\|651949_652147_-	hypothetical protein	NA	NA	NA	NA
WP_154048405.1\|652222_652810_-	hypothetical protein	NA	NA	NA	NA
WP_154048406.1\|652826_653699_-	hypothetical protein	NA	NA	NA	NA
WP_079415962.1\|653809_655219_-	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_079415964.1\|656795_657017_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_079415965.1\|657013_660268_+	helicase	A0A2K5B253	Erysipelothrix_phage	1.3e-240	44.0
WP_079415967.1\|660264_662955_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_079415969.1\|662971_664759_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_079415971.1\|664755_665595_+	DUF4391 domain-containing protein	NA	NA	NA	NA
WP_079415973.1\|665735_667004_+	ATP-binding protein	V9QJ85	Oenococcus_phage	3.0e-07	29.8
WP_079415975.1\|667008_667686_+	RloB domain-containing protein	NA	NA	NA	NA
WP_079420277.1\|667719_669678_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	2.4e-109	37.3
WP_079415977.1\|669685_670801_+	Fic family protein	D7RWK9	Brochothrix_phage	1.7e-35	33.6
WP_079415979.1\|670974_673983_+	DEAD/DEAH box helicase family protein	A0A2K5B256	Erysipelothrix_phage	2.7e-192	40.7
WP_079420231.1\|674280_675825_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_079415568.1\|675847_676639_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.8e-34	34.9
WP_079415981.1\|677615_677897_-	hypothetical protein	NA	NA	NA	NA
WP_079415983.1\|677893_678622_-	hypothetical protein	NA	NA	NA	NA
WP_079415985.1\|678618_678843_-	hypothetical protein	NA	NA	NA	NA
WP_079415987.1\|678957_679398_-	hypothetical protein	NA	NA	NA	NA
WP_079415989.1\|679714_681169_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	4.4e-71	37.1
WP_154048407.1\|681165_681498_-	hypothetical protein	NA	NA	NA	NA
WP_079415993.1\|681620_682094_-	hypothetical protein	NA	NA	NA	NA
WP_079415995.1\|682090_682282_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_079415997.1\|683474_684836_-\|capsid	phage major capsid protein	G8EXZ9	Synechococcus_phage	6.4e-16	28.1
WP_079415999.1\|685016_685262_-	hypothetical protein	NA	NA	NA	NA
WP_154048408.1\|685264_687052_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.4e-71	33.4
WP_154048409.1\|687048_687744_-	toprim domain-containing protein	Q8LTT9	Enterobacteria_phage	1.2e-10	36.6
WP_079416005.1\|687772_688969_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	7.9e-95	44.7
692866:692884	attR	NA	NA	NA	NA

DBSCAN-SWA_2

715064 : 723249

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079416050.1\|715064_716480_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.6e-22	24.4
WP_079416052.1\|716533_717343_-	3'-5' exonuclease	NA	NA	NA	NA
WP_079416054.1\|717384_718443_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.4e-28	34.4
WP_079416056.1\|718451_719426_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9V574	Lactobacillus_phage	6.2e-05	52.2
WP_079416058.1\|719456_720314_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-27	44.2
WP_079416060.1\|720310_721066_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.6e-63	53.6
WP_154048412.1\|721666_722566_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_079416062.1\|722607_723249_-	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	1.5e-12	29.9

DBSCAN-SWA_3

1565756 : 1612755

Staphylococcus_phage(30.0%)

transposase,integrase

attL 1577101:1577116|attR 1615857:1615872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079417477.1\|1565756_1566725_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_154048530.1\|1567159_1568365_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_079417481.1\|1568455_1569379_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_079417483.1\|1569395_1570517_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_079417485.1\|1570546_1571293_+	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	1.5e-19	29.7
WP_079417487.1\|1571316_1572006_+	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	3.6e-15	24.9
WP_079417489.1\|1572080_1573307_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	1.3e-132	56.9
WP_079417491.1\|1573360_1573702_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_079417493.1\|1573732_1574773_+	aliphatic amidase	NA	NA	NA	NA
WP_079417495.1\|1574816_1575620_+	CbbQ/NirQ/NorQ/GpvN family protein	NA	NA	NA	NA
WP_169836764.1\|1575796_1577248_+	VWA domain-containing protein	NA	NA	NA	NA
1577101:1577116	attL	NA	NA	NA	NA
WP_013105975.1\|1578659_1579799_+\|transposase	IS630-like element ISThsp15 family transposase	NA	NA	NA	NA
WP_154048531.1\|1579845_1580061_+	hypothetical protein	NA	NA	NA	NA
WP_079417499.1\|1580088_1582257_+	response regulator	A0A1V0SGX0	Hokovirus	6.0e-32	27.8
WP_079417501.1\|1582249_1583167_+	response regulator transcription factor	NA	NA	NA	NA
WP_079417503.1\|1583878_1584595_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_079417506.1\|1584594_1587714_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.3e-56	29.5
WP_079417508.1\|1587943_1588612_-	HNH endonuclease	NA	NA	NA	NA
WP_079417510.1\|1588611_1589949_-	AAA family ATPase	C7BGE8	Burkholderia_phage	3.1e-15	24.7
WP_079417512.1\|1589965_1591234_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_079417514.1\|1591224_1593681_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	1.1e-71	35.7
WP_079417516.1\|1595497_1597087_+	recombinase family protein	C7F8K5	Bacillus_phage	1.6e-21	24.5
WP_079417518.1\|1597463_1598627_+	Fic family protein	D7RWK9	Brochothrix_phage	5.3e-35	29.0
WP_013105975.1\|1598732_1599872_+\|transposase	IS630-like element ISThsp15 family transposase	NA	NA	NA	NA
WP_154048531.1\|1599918_1600134_+	hypothetical protein	NA	NA	NA	NA
WP_051849179.1\|1600161_1600878_+	hypothetical protein	NA	NA	NA	NA
WP_079417520.1\|1600861_1603378_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_154048446.1\|1603374_1606569_+	DNA breaking-rejoining enzyme, catalytic core	NA	NA	NA	NA
WP_079415568.1\|1607842_1608634_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.8e-34	34.9
WP_079420231.1\|1608656_1610201_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_079417526.1\|1610569_1611004_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_031407563.1\|1611702_1612755_-\|transposase	IS630 family transposase	NA	NA	NA	NA
1615857:1615872	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1658568 : 1665433

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079417564.1\|1658568_1659132_-	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	2.0e-11	31.4
WP_079417566.1\|1659142_1659526_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_079417354.1\|1659785_1660976_-	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	4.4e-13	27.5
WP_079417568.1\|1661486_1662275_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	8.5e-53	50.0
WP_079417570.1\|1662271_1663315_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.1e-79	45.7
WP_079417572.1\|1663301_1663892_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.1e-64	58.9
WP_079420437.1\|1663933_1665433_-	anthranilate synthase component I	A0A0B5J984	Pandoravirus	9.2e-40	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection