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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020092 Escherichia coli strain 13E0725 chromosome, complete genome 8 crisprs c2c9_V-U4,csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas1,DEDDh,DinG,RT 0 15 13 0

Results visualization

1. NZ_CP020092
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_1 758738-758989 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_2 774848-774965 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_3 1240568-1240962 Orphan I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_4 1267437-1268015 TypeI-E I-E
9 spacers
cas1,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_5 2514165-2514288 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_6 3227875-3227966 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_7 3565072-3565216 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020092_8 4372492-4372624 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020092_6 6.1|3227901|40|NZ_CP020092|CRISPRCasFinder 3227901-3227940 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP020092_8 8.1|4372509|42|NZ_CP020092|PILER-CR 4372509-4372550 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP020092_8 8.2|4372568|40|NZ_CP020092|PILER-CR 4372568-4372607 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP020092_5 5.1|2514208|38|NZ_CP020092|CRISPRCasFinder 2514208-2514245 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP053858 Rhizobium pusense strain 76 plasmid pR76, complete sequence 455664-455695 5 0.844
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP053858 Rhizobium pusense strain 76 plasmid pR76, complete sequence 455664-455695 5 0.844
NZ_CP020092_3 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240780-1240811 32 MH389777 Dickeya phage vB_DsoM_JA11, complete genome 116689-116720 6 0.812
NZ_CP020092_3 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240780-1240811 32 MH460462 Dickeya phage vB_DsoM_JA33, complete genome 116679-116710 6 0.812
NZ_CP020092_3 3.5|1240841|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240841-1240872 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP020092_4 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267772-1267803 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 270741-270772 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NC_017327 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence 1429126-1429157 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 450512-450543 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 1363718-1363749 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP009145 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence 259589-259620 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021801 Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence 156145-156176 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 108131-108162 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021824 Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence 136871-136902 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 308731-308762 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 386165-386196 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 1141409-1141440 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 239251-239282 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP021217 Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence 1491172-1491203 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP026526 Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence 173783-173814 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP019483 Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence 251909-251940 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NZ_CP019486 Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence 227862-227893 8 0.75
NZ_CP020092_4 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT 1267589-1267620 32 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 270403-270434 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 270741-270772 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NC_017327 Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence 1429126-1429157 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 450512-450543 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 1363718-1363749 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP009145 Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence 259589-259620 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021801 Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence 156145-156176 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 108131-108162 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021824 Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence 136871-136902 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 308731-308762 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 386165-386196 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 1141409-1141440 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 239251-239282 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP021217 Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence 1491172-1491203 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP026526 Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence 173783-173814 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP019483 Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence 251909-251940 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NZ_CP019486 Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence 227862-227893 8 0.75
NZ_CP020092_4 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT 1267650-1267681 32 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 270403-270434 8 0.75
NZ_CP020092_4 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267772-1267803 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP020092_4 4.9|1267955|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267955-1267986 32 HM029250 Lactococcus phage 949, complete genome 55071-55102 8 0.75
NZ_CP020092_3 3.3|1240719|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240719-1240750 32 NZ_CP040258 Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence 12838-12869 9 0.719
NZ_CP020092_3 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240780-1240811 32 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 712830-712861 9 0.719
NZ_CP020092_4 4.5|1267711|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267711-1267742 32 MT708550 Achromobacter phage Mano, complete genome 2686-2717 9 0.719
NZ_CP020092_4 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267772-1267803 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP020092_4 4.7|1267833|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267833-1267864 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 9 0.719
NZ_CP020092_3 3.2|1240658|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT 1240658-1240689 32 MN694030 Marine virus AFVG_250M187, complete genome 18204-18235 10 0.688
NZ_CP020092_4 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT 1267528-1267559 32 MK449011 Streptococcus phage Javan92, complete genome 36157-36188 11 0.656
NZ_CP020092_4 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT 1267528-1267559 32 MK448835 Streptococcus phage Javan93, complete genome 36157-36188 11 0.656
NZ_CP020092_4 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT 1267528-1267559 32 MK448836 Streptococcus phage Javan95, complete genome 37400-37431 11 0.656
NZ_CP020092_4 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT 1267528-1267559 32 MK448825 Streptococcus phage Javan639, complete genome 37400-37431 11 0.656
NZ_CP020092_4 4.9|1267955|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR 1267955-1267986 32 NC_009760 Bacillus phage 0305phi8-36, complete genome 157057-157088 11 0.656

1. spacer 6.1|3227901|40|NZ_CP020092|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 8.1|4372509|42|NZ_CP020092|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 8.2|4372568|40|NZ_CP020092|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

4. spacer 5.1|2514208|38|NZ_CP020092|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 5, identity: 0.844

acggcg-aatatagctgtcaacgcgctcgacat	CRISPR spacer
-tggcgcaatatagctgtcgacgcgctcgtcaa	Protospacer
 .**** ************.********* ** 

6. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 5, identity: 0.844

acggcg-aatatagctgtcaacgcgctcgacat	CRISPR spacer
-tggcgcaatatagctgtcgacgcgctcgtcaa	Protospacer
 .**** ************.********* ** 

7. spacer 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 6, identity: 0.812

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
gcgttgatgtgcttgcaggtgttgcaggtaaa	Protospacer
********** *****.*********..**  

8. spacer 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 6, identity: 0.812

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
gcgttgatgtgcttgcaggtgttgcaggtaaa	Protospacer
********** *****.*********..**  

9. spacer 3.5|1240841|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

--tttcagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgc--ttcaccggaacaccgacggtcac	Protospacer
  .*** **  **** ** ***************

10. spacer 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
tcagcttgttgtccgcgatgcggtacgcccgc	Protospacer
 **..************** ******** **.

11. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

12. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

13. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

14. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

15. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

16. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

17. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

18. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

19. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

20. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

21. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

22. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

23. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

24. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

25. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

26. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

27. spacer 4.3|1267589|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

28. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

29. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

30. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

31. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

32. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

33. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

34. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

35. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

36. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

37. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

38. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

39. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

40. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

41. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

42. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

43. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

44. spacer 4.4|1267650|32|NZ_CP020092|CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

acggcgaatatagctgtcaacgcgctcgacat	CRISPR spacer
atgccgaatatagctgttaatgcgctcaaacc	Protospacer
*.* *************.**.******.*  .

45. spacer 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
ccgtgcggttgtccgcgatccggtaggcgcgc	Protospacer
 *.  . ****************** *****.

46. spacer 4.9|1267955|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

tcggtggctggattgaaaaagaagata---atctg	CRISPR spacer
atggtggctggacagaaaaagaagagatagat---	Protospacer
 .**********. *********** *   **   

47. spacer 3.3|1240719|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040258 (Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence) position: , mismatch: 9, identity: 0.719

gattttaataactgttgatctactccttgcaa	CRISPR spacer
aattttaataattgtcgatctacttcaggtgt	Protospacer
.**********.***.********.*  *.. 

48. spacer 3.4|1240780|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgttgatgttcttgcgggtgttgcaaatatt	CRISPR spacer
tcgttgatgttcttgctggtgctgaactggct	Protospacer
 *************** ****.** *   ..*

49. spacer 4.5|1267711|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 9, identity: 0.719

tgagatcaaacgttagcccggcggtaatttgc	CRISPR spacer
ggcggtcaaaggtaagcccggcggtaatgcta	Protospacer
 * *.***** ** ************** .  

50. spacer 4.6|1267772|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

------gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
cgcggggc------ttggccgcgatccggtccgcgcga	Protospacer
      **      *** ************ ****** 

51. spacer 4.7|1267833|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ttccagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgcttcaccggaacaccgacggtcac	Protospacer
 .*.  *. **** ** ***************

52. spacer 3.2|1240658|32|NZ_CP020092|PILER-CR,CRISPRCasFinder,CRT matches to MN694030 (Marine virus AFVG_250M187, complete genome) position: , mismatch: 10, identity: 0.688

cctaatttttatatagctgcggatgatgtaaa	CRISPR spacer
taatatttttctatagctgcggatggtgcgtc	Protospacer
.   ****** **************.**..  

53. spacer 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

54. spacer 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

55. spacer 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

56. spacer 4.2|1267528|32|NZ_CP020092|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 11, identity: 0.656

gactgctcagattgggaatttgaccagcgacc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
....****************** * **  .. 

57. spacer 4.9|1267955|32|NZ_CP020092|CRISPRCasFinder,CRT,PILER-CR matches to NC_009760 (Bacillus phage 0305phi8-36, complete genome) position: , mismatch: 11, identity: 0.656

tcggtggctggattgaaaaagaagataatctg	CRISPR spacer
cgctcatctcgattgaagaagaagataatcaa	Protospacer
.   .. ** *******.************ .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1406148 : 1465489 72 Salmonella_phage(47.83%) terminase,holin,transposase,tRNA,integrase,head,tail attL 1410295:1410313|attR 1475744:1475762
DBSCAN-SWA_2 1920646 : 2029549 119 Stx2-converting_phage(39.77%) terminase,holin,capsid,transposase,protease,tRNA,integrase,head,tail attL 1923121:1923141|attR 1982151:1982171
DBSCAN-SWA_3 2144077 : 2232942 102 Escherichia_phage(42.19%) terminase,holin,capsid,transposase,portal,integrase,head,tail attL 2128581:2128598|attR 2179725:2179742
DBSCAN-SWA_4 2747253 : 2868938 120 Escherichia_phage(43.94%) terminase,holin,transposase,protease,lysis,portal,tRNA,integrase,tail attL 2807278:2807303|attR 2863577:2863602
DBSCAN-SWA_5 2945481 : 2996638 58 Escherichia_phage(23.53%) terminase,holin,transposase,protease,head,tail NA
DBSCAN-SWA_6 3258900 : 3315691 67 Enterobacteria_phage(30.56%) holin,transposase,protease,integrase,tail attL 3263574:3263633|attR 3300546:3300610
DBSCAN-SWA_7 3391673 : 3478552 86 Salmonella_phage(58.18%) terminase,capsid,portal,protease,plate,lysis,tRNA,integrase,head,tail attL 3384636:3384651|attR 3481123:3481138
DBSCAN-SWA_8 3777556 : 3820207 51 Enterobacteria_phage(52.5%) integrase,transposase,protease,holin attL 3793362:3793408|attR 3820221:3820267
DBSCAN-SWA_9 4065750 : 4128768 54 Enterobacteria_phage(23.08%) transposase,capsid,holin NA
DBSCAN-SWA_10 4155851 : 4201228 36 Cronobacter_phage(14.29%) transposase,tRNA,plate NA
DBSCAN-SWA_11 4416786 : 4495506 88 Enterobacteria_phage(35.59%) terminase,holin,capsid,transposase,portal,tRNA,integrase,head,tail attL 4459657:4459671|attR 4496692:4496706
DBSCAN-SWA_12 4733788 : 4742896 6 Stx2-converting_phage(66.67%) transposase,protease NA
DBSCAN-SWA_13 4823368 : 4871743 59 Enterobacteria_phage(39.22%) terminase,holin,capsid,portal,tRNA,integrase,head,tail attL 4818747:4818761|attR 4832488:4832502
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage