CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP020109	Klebsiella pneumoniae strain AR_0098 plasmid tig00000001, complete sequence	0 crisprs	RT,csa3	0	2
NZ_CP020110	Klebsiella pneumoniae strain AR_0098 plasmid tig00000002, complete sequence	0 crisprs	RT	0	1
NZ_CP020108	Klebsiella pneumoniae strain AR_0098, complete genome	2 crisprs	RT,csa3,cas3,DinG,WYL,DEDDh	1	10
NZ_CP020112	Klebsiella pneumoniae strain AR_0098 plasmid tig00000004, complete sequence	0 crisprs	NA	0	0
NZ_CP020111	Klebsiella pneumoniae strain AR_0098 plasmid tig00000003, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30602 : 73933

Escherichia_phage(17.65%)

transposase,integrase

attL 34615:34631|attR 66876:66892

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019473.1\|30602_31583_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_003032875.1\|31726_33202_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|33452_33884_+	silver-binding protein SilE	NA	NA	NA	NA
34615:34631	attL	NA	NA	NA	NA
WP_085955172.1\|35312_36519_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|37559_39557_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_004152070.1\|39619_40897_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_020444838.1\|41879_43334_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004197688.1\|43935_44193_+	hypothetical protein	NA	NA	NA	NA
WP_004152067.1\|44865_45789_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_071527918.1\|45853_46165_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000019473.1\|46772_47753_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_001515717.1\|49482_50223_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152063.1\|50939_51950_-	replication initiation protein	J9Q7H0	Salmonella_phage	8.8e-87	55.9
WP_000523813.1\|52701_53868_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
WP_004152062.1\|53867_54839_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
WP_004152715.1\|57790_59062_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.6e-155	63.7
WP_004178083.1\|59061_59487_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
WP_004152765.1\|59892_61377_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152753.1\|61610_61841_+	hypothetical protein	NA	NA	NA	NA
WP_004118478.1\|62361_62787_+	antirestriction protein	NA	NA	NA	NA
WP_004152754.1\|63023_63278_+	hypothetical protein	H9C187	Pectobacterium_phage	1.2e-11	50.0
WP_004118473.1\|63312_63630_+	hypothetical protein	NA	NA	NA	NA
WP_004178072.1\|64411_64639_+	hypothetical protein	NA	NA	NA	NA
WP_004198570.1\|64730_64961_+	hypothetical protein	NA	NA	NA	NA
WP_004178068.1\|65012_66368_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_004152645.1\|66415_66979_+	methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1
66876:66892	attR	NA	NA	NA	NA
WP_004152644.1\|67754_68297_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	6.0e-50	76.7
WP_004152643.1\|68345_68594_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_004178066.1\|68663_70700_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.0e-22	26.0
WP_004152641.1\|70766_71198_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_004152640.1\|71194_71923_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_004199358.1\|71919_72246_+	hypothetical protein	NA	NA	NA	NA
WP_004152638.1\|72301_72676_+	hypothetical protein	NA	NA	NA	NA
WP_004220208.1\|72853_73933_-\|transposase	IS481-like element ISKpn28 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

116839 : 144362

Escherichia_phage(27.27%)

bacteriocin,transposase,integrase

attL 121882:121898|attR 142769:142785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004178051.1\|116839_119161_+\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
WP_004152296.1\|119162_119441_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004152294.1\|119709_120261_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-19	35.2
WP_004199332.1\|120581_120860_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_004171457.1\|121076_121154_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004152292.1\|121146_122004_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
121882:121898	attL	NA	NA	NA	NA
WP_004118217.1\|123276_123912_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_000005560.1\|123908_125021_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118216.1\|125013_126402_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_016197752.1\|126401_126632_-	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_000412211.1\|127609_128269_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|128469_128847_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|128913_131880_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|131882_132443_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|132568_132919_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|133121_134135_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|134279_134777_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|134888_135179_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|135184_135976_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|136139_136487_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|136480_137320_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|137447_137651_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|137806_139012_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|139022_139328_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|139554_140319_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|140811_141396_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|141395_142634_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|142630_143536_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
142769:142785	attR	NA	NA	NA	NA
WP_001067855.1\|143657_144362_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56715 : 66220

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152765.1\|56715_58200_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_000776034.1\|58608_59040_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_001754953.1\|59039_60311_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.4e-150	63.7
WP_006797589.1\|60392_61370_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1
WP_000368714.1\|61366_62572_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000339857.1\|62986_63256_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|63432_64299_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_001067855.1\|65515_66220_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP020108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020108_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020108_1

1467217-1467312

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020108_1

>merge|NZ_CP020108|1|1467217-1467312|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP020108|1|1|1467217-1467312|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020108.1\|WP_004151300.1\|1468553_1469243_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP020108.1\|WP_004151287.1\|1461695_1461866_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP020108.1\|WP_004151296.1\|1465386_1466817_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP020108.1\|WP_004151310.1\|1472165_1472822_+\|DNA-methyltransferase	unknown	unknown	gnl\|CDD\|227069
NZ_CP020108.1\|WP_004151293.1\|1463641_1464484_-\|translation-repressor-RelE	unknown	unknown	gnl\|CDD\|379401
NZ_CP020108.1\|WP_004151294.1\|1464590_1465097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020108.1\|WP_004151301.1\|1469593_1469809_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020108.1\|WP_004151304.1\|1470191_1470476_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP020108.1\|WP_001548453.1\|1467930_1468152_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP020108.1\|WP_004151295.1\|1465093_1465387_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP020108.1\|WP_004151286.1\|1461067_1461703_-\|protein-ninG	unknown	unknown	gnl\|CDD\|368603
NZ_CP020108.1\|WP_004151285.1\|1460933_1461071_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP020108.1\|WP_004151299.1\|1468192_1468426_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP020108.1\|WP_004151306.1\|1471333_1472014_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP020108.1\|WP_004151291.1\|1462821_1463469_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP020108.1\|WP_004151308.1\|1472010_1472169_+\|DUF1317-family-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP020108.1\|WP_004151305.1\|1470491_1471337_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP020108.1\|WP_004151303.1\|1469908_1470103_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020108.1\|WP_004151288.1\|1461865_1462321_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP020108.1\|WP_004151284.1\|1460410_1460941_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158

Protein	Function_ID	Function_description	E-value
NZ_CP020108.1\|WP_004151300.1\|1468553_1469243_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP020108.1\|WP_004151287.1\|1461695_1461866_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19
NZ_CP020108.1\|WP_004151296.1\|1465386_1466817_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	7.87266e-159
NZ_CP020108.1\|WP_004151310.1\|1472165_1472822_+\|DNA-methyltransferase	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	6.42213e-22
NZ_CP020108.1\|WP_004151293.1\|1463641_1464484_-\|translation-repressor-RelE	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP020108.1\|WP_001548453.1\|1467930_1468152_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP020108.1\|WP_004151295.1\|1465093_1465387_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP020108.1\|WP_004151286.1\|1461067_1461703_-\|protein-ninG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP020108.1\|WP_004151305.1\|1470491_1471337_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34
NZ_CP020108.1\|WP_004151299.1\|1468192_1468426_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP020108.1\|WP_004151306.1\|1471333_1472014_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP020108.1\|WP_004151291.1\|1462821_1463469_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP020108.1\|WP_004151308.1\|1472010_1472169_+\|DUF1317-family-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	3.35548e-20
NZ_CP020108.1\|WP_004151288.1\|1461865_1462321_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP020108.1\|WP_004151284.1\|1460410_1460941_-\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	8.84074e-15

>NZ_CP020108.1|WP_004151296.1|1465386_1466817_-|AAA-family-ATPase
MTSDFMTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP020108.1|WP_004151295.1|1465093_1465387_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP020108.1|WP_004151294.1|1464590_1465097_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP020108.1|WP_004151293.1|1463641_1464484_-|translation-repressor-RelE
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP020108.1|WP_004151291.1|1462821_1463469_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP020108.1|WP_004151288.1|1461865_1462321_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP020108.1|WP_004151287.1|1461695_1461866_-|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP020108.1|WP_004151286.1|1461067_1461703_-|protein-ninG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP020108.1|WP_004151285.1|1460933_1461071_-|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP020108.1|WP_004151284.1|1460410_1460941_-|HNH-endonuclease
MSKSEKSITQELLRTLLEYDPQTGIFRWKIKASSSAHPGDIAGCIDGQGYRVIRIYGKNRKAHRLAWLYVYGDEPEVIDHIDRNRSNNAIENLRAVTFSQNSANRAAKSKNKSGFTGVYWNELGKKWQASIVANGRTHYVGLFATAQEAAKARTEYARQLYANFYIPSFHDQEAAK
>NZ_CP020108.1|WP_001548453.1|1467930_1468152_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP020108.1|WP_004151299.1|1468192_1468426_-|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP020108.1|WP_004151300.1|1468553_1469243_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP020108.1|WP_004151301.1|1469593_1469809_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP020108.1|WP_004151303.1|1469908_1470103_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP020108.1|WP_004151304.1|1470191_1470476_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP020108.1|WP_004151305.1|1470491_1471337_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP020108.1|WP_004151306.1|1471333_1472014_+|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP020108.1|WP_004151308.1|1472010_1472169_+|DUF1317-family-protein
MKHYRDAITVGKVKCMYSVLHRGWLMPSGEVVRNPLKAQRLAEELDTKRGAR
>NZ_CP020108.1|WP_004151310.1|1472165_1472822_+|DNA-methyltransferase
MKRYSLIYADPAWSYGNTISNGAAVDHYPTMSLLDMKRLPVWELAADNAVLAMWYTGTHNQEAIELAEAWGFTVRTMKGFTWVKLNQLAELRITKALAEGDVTDFYDFLALLNAETRMNGGNHTRANTEDVLIATRGAGLERKHAGIKQVVYSPLGAHSEKPWEVRHRLELLYGDVPRIELFSRSAAPGWSHWGNQCATASVELIPGCAIDVVKTEAA

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Crispr_ID: NZ_CP020108_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020108_2

1952389-1952483

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020108_2

>merge|NZ_CP020108|2|1952389-1952483|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP020108|2|2|1952389-1952483|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020108.1\|WP_002888347.1\|1950216_1950756_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP020108.1\|WP_002888324.1\|1960722_1961544_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP020108.1\|WP_002888349.1\|1944018_1946376_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP020108.1\|WP_002888320.1\|1963032_1963512_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP020108.1\|WP_002888357.1\|1941507_1943010_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP020108.1\|WP_002888323.1\|1961546_1961924_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP020108.1\|WP_004147026.1\|1956041_1958390_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP020108.1\|WP_002888373.1\|1937708_1938476_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP020108.1\|WP_002888353.1\|1943147_1943843_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP020108.1\|WP_002888368.1\|1939787_1941497_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP020108.1\|WP_002888337.1\|1954239_1954938_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP020108.1\|WP_002888370.1\|1938604_1939450_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP020108.1\|WP_004151368.1\|1946563_1949470_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP020108.1\|WP_002888332.1\|1954970_1955798_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP020108.1\|WP_002888345.1\|1950935_1952300_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP020108.1\|WP_002888340.1\|1952624_1954250_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP020108.1\|WP_002888329.1\|1958444_1959731_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP020108.1\|WP_002888321.1\|1961928_1962777_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP020108.1\|WP_002888327.1\|1959736_1960726_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP020108.1\|WP_002888348.1\|1949482_1950142_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659

Protein	Function_ID	Function_description	E-value
NZ_CP020108.1\|WP_002888347.1\|1950216_1950756_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP020108.1\|WP_002888324.1\|1960722_1961544_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP020108.1\|WP_002888349.1\|1944018_1946376_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP020108.1\|WP_002888320.1\|1963032_1963512_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP020108.1\|WP_002888357.1\|1941507_1943010_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP020108.1\|WP_002888323.1\|1961546_1961924_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP020108.1\|WP_004147026.1\|1956041_1958390_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP020108.1\|WP_002888373.1\|1937708_1938476_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP020108.1\|WP_002888353.1\|1943147_1943843_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP020108.1\|WP_002888368.1\|1939787_1941497_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP020108.1\|WP_002888337.1\|1954239_1954938_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP020108.1\|WP_002888370.1\|1938604_1939450_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP020108.1\|WP_004151368.1\|1946563_1949470_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP020108.1\|WP_002888332.1\|1954970_1955798_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP020108.1\|WP_002888345.1\|1950935_1952300_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP020108.1\|WP_002888340.1\|1952624_1954250_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP020108.1\|WP_002888329.1\|1958444_1959731_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP020108.1\|WP_002888321.1\|1961928_1962777_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP020108.1\|WP_002888327.1\|1959736_1960726_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP020108.1\|WP_002888348.1\|1949482_1950142_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161

>NZ_CP020108.1|WP_002888345.1|1950935_1952300_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP020108.1|WP_002888347.1|1950216_1950756_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP020108.1|WP_002888348.1|1949482_1950142_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP020108.1|WP_004151368.1|1946563_1949470_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP020108.1|WP_002888349.1|1944018_1946376_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP020108.1|WP_002888353.1|1943147_1943843_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP020108.1|WP_002888357.1|1941507_1943010_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP020108.1|WP_002888368.1|1939787_1941497_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP020108.1|WP_002888370.1|1938604_1939450_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP020108.1|WP_002888373.1|1937708_1938476_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP020108.1|WP_002888340.1|1952624_1954250_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP020108.1|WP_002888337.1|1954239_1954938_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP020108.1|WP_002888332.1|1954970_1955798_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP020108.1|WP_004147026.1|1956041_1958390_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP020108.1|WP_002888329.1|1958444_1959731_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP020108.1|WP_002888327.1|1959736_1960726_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP020108.1|WP_002888324.1|1960722_1961544_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP020108.1|WP_002888323.1|1961546_1961924_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP020108.1|WP_002888321.1|1961928_1962777_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP020108.1|WP_002888320.1|1963032_1963512_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP020108_1	1.1\|1467247\|36\|NZ_CP020108\|CRISPRCasFinder	1467247-1467282	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP020108_1	1.1\|1467247\|36\|NZ_CP020108\|CRISPRCasFinder	1467247-1467282	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP020108_1	1.1\|1467247\|36\|NZ_CP020108\|CRISPRCasFinder	1467247-1467282	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|1467247|36|NZ_CP020108|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|1467247|36|NZ_CP020108|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|1467247|36|NZ_CP020108|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

91900 : 102787

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|91900_95008_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|95062_96328_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|96358_97447_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|97533_97794_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|98091_98952_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|98972_99734_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|99994_100897_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_022644633.1\|100908_102174_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.1e-232	99.3
WP_002210516.1\|102166_102787_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_2

330283 : 470216

165

Klebsiella_phage(24.07%)

terminase,transposase,tail,integrase,holin

attL 322822:322839|attR 478656:478673

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
322822:322839	attL	NA	NA	NA	NA
WP_004152576.1\|330283_331150_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|331149_331923_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|331919_333116_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|333115_333469_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|333470_334124_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|334177_334744_-	hypothetical protein	NA	NA	NA	NA
WP_004199301.1\|334786_334969_-	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|335018_335360_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|335359_336382_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152568.1\|336384_336687_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152567.1\|336687_337287_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|337286_339290_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|339279_339432_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|339467_339893_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_085955245.1\|340219_341411_+\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152178.1\|341352_341643_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_004152177.1\|341653_342799_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|342802_343243_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|343337_343724_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|343723_344230_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|344226_344646_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|344614_344896_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|344935_345877_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|345888_346383_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|346386_347589_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|347640_348189_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|348244_349696_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|349933_351334_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152171.1\|351284_352037_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152170.1\|352138_352459_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|352693_353083_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|353079_353610_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|353612_353861_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|354266_355049_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|355045_355522_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|355518_356481_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|356482_358141_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|358717_358939_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|359036_359705_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|359875_360190_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|360182_360371_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|360540_360906_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|360898_361153_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004177208.1\|361124_361343_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_004152156.1\|361339_361765_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|361761_361956_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|361952_362780_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|362884_363403_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|363408_364119_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|364108_364333_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|364329_364542_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152149.1\|364538_365018_+	hypothetical protein	NA	NA	NA	NA
WP_004152148.1\|365196_365439_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|365419_366601_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|366797_367346_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152145.1\|367544_369077_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|369293_370055_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152143.1\|370163_371078_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004176439.1\|371378_371567_+	hypothetical protein	NA	NA	NA	NA
WP_004152142.1\|371637_371946_-	ATP-binding protein	NA	NA	NA	NA
WP_004152141.1\|372113_372983_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.7e-50	42.1
WP_004218007.1\|373061_374264_-	MFS transporter	NA	NA	NA	NA
WP_004152139.1\|374336_375473_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004152138.1\|375645_376530_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152137.1\|376654_377488_-	hypothetical protein	NA	NA	NA	NA
WP_004152136.1\|377718_378105_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_004152135.1\|378272_379889_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152134.1\|380074_380782_+	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_004152133.1\|380778_381744_-	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_004152131.1\|381846_382353_+	thiol peroxidase	NA	NA	NA	NA
WP_085666574.1\|382423_383446_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_002901979.1\|383577_385119_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_002901977.1\|385291_386605_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_071531198.1\|386736_387618_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152127.1\|387707_388769_-	TIGR01620 family protein	NA	NA	NA	NA
WP_002901917.1\|388765_390163_-	YcjX family protein	NA	NA	NA	NA
WP_002901915.1\|390265_390484_-	phage shock protein PspD	NA	NA	NA	NA
WP_002901913.1\|390512_390872_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002901911.1\|390871_391096_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002901908.1\|391151_391820_-	phage shock protein PspA	NA	NA	NA	NA
WP_002901905.1\|391987_392962_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002901901.1\|392952_394344_-	MFS transporter	NA	NA	NA	NA
WP_002901900.1\|394369_395539_-	amidohydrolase	NA	NA	NA	NA
WP_004152126.1\|395710_398020_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004171423.1\|397998_398829_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004152124.1\|398939_399845_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002901817.1\|400178_401822_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002901816.1\|401818_402784_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002901815.1\|402988_403660_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|403846_404674_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|404749_406015_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|406016_406436_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|406515_408000_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152776.1\|408897_409320_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|409912_410617_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001389365.1\|410793_411558_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004152787.1\|411941_412082_+	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|412064_412565_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|412692_413532_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|413525_413873_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|414036_414828_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_015057121.1\|414973_415933_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_001067855.1\|415823_416528_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152703.1\|416776_418720_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.1e-37	69.8
WP_004152702.1\|418961_419561_+	hypothetical protein	NA	NA	NA	NA
WP_004152700.1\|419785_420517_-	hypothetical protein	NA	NA	NA	NA
WP_022644627.1\|420520_423475_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	4.2e-44	68.3
WP_004152652.1\|423551_426620_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.5
WP_004152651.1\|426616_426997_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_004152650.1\|427006_427489_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.7e-80	94.4
WP_004152649.1\|427669_428134_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
WP_000019473.1\|428692_429673_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_000019473.1\|430174_431155_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004217331.1\|431267_434165_-\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.6e-104	32.7
WP_099119318.1\|434426_434618_-	hypothetical protein	S4TR42	Salmonella_phage	7.8e-05	78.3
WP_004217333.1\|434842_435199_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|435275_435482_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|435619_436102_-	hypothetical protein	NA	NA	NA	NA
WP_004217341.1\|436155_437328_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|437351_437744_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004217343.1\|437740_438292_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-28	39.9
WP_004217344.1\|438293_438677_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_004190646.1\|438663_438897_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004217346.1\|438906_439161_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
WP_004217348.1\|439162_439558_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	4.3e-13	38.5
WP_004190653.1\|439879_440833_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004217351.1\|440843_441629_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_019405022.1\|442159_443272_-	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-111	55.1
WP_004218551.1\|443255_444656_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-127	53.5
WP_004190663.1\|444655_445963_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_004218556.1\|445940_446945_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004218558.1\|447807_448053_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_004190672.1\|449011_449287_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|449283_449628_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004218565.1\|449624_450164_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|450160_450460_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_022644626.1\|450938_451985_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004232548.1\|452210_452900_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|452899_453040_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|453036_453675_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|453667_454336_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|454332_454500_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|454480_454948_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004218530.1\|455468_456497_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|456704_456950_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|457005_457308_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|457304_458153_-	AAA family ATPase	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|458149_459010_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|459095_459317_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|459357_459585_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|459696_460395_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|460417_460537_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|460682_461759_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|461840_462044_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004135674.1\|462472_462667_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|462755_463040_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|463055_463901_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|463897_464185_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|464186_464867_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|464863_465292_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|465288_465951_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004153574.1\|466158_467346_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|467522_468413_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|468412_469405_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|469406_470216_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
478656:478673	attR	NA	NA	NA	NA

DBSCAN-SWA_3

759182 : 775262

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004199491.1\|759182_759458_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.9e-23	60.9
WP_004199521.1\|759431_760001_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.9e-84	86.8
WP_071784388.1\|760124_761621_+	hypothetical protein	A0A0A8J9V7	Klebsiella_phage	7.9e-68	34.5
WP_022644621.1\|761819_762014_-	hypothetical protein	NA	NA	NA	NA
WP_022644622.1\|762024_763536_-	hypothetical protein	H6X4Y6	Enterobacteria_phage	1.3e-57	33.5
WP_004199504.1\|764533_764686_-	DUF1378 family protein	NA	NA	NA	NA
WP_009308366.1\|764682_765213_-	hypothetical protein	K7P6W1	Enterobacteria_phage	2.4e-35	48.9
WP_004191039.1\|765209_765749_-	lysozyme	H6WRZ4	Salmonella_phage	1.0e-81	78.1
WP_004191041.1\|765750_765966_-	hypothetical protein	A5LH82	Enterobacteria_phage	1.4e-10	55.9
WP_022644619.1\|766178_767429_+	hypothetical protein	NA	NA	NA	NA
WP_127897200.1\|767876_768200_-	hypothetical protein	NA	NA	NA	NA
WP_022644617.1\|768196_770914_-	hypothetical protein	Q858F8	Salmonella_phage	8.5e-262	51.2
WP_022644616.1\|770913_772755_-	hypothetical protein	Q858F9	Salmonella_phage	9.4e-79	33.4
WP_022644615.1\|772754_775262_-	transglycosylase SLT domain-containing protein	Q858G0	Salmonella_phage	7.6e-55	26.4

DBSCAN-SWA_4

780378 : 803034

Pectobacterium_phage(28.57%)

tail,integrase,head

attL 771158:771172|attR 804118:804132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
771158:771172	attL	NA	NA	NA	NA
WP_004191050.1\|780378_780852_-	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
WP_004191051.1\|780890_781886_-	hypothetical protein	W6MW28	Pseudomonas_phage	2.7e-104	60.2
WP_004199538.1\|781896_782634_-	hypothetical protein	NA	NA	NA	NA
WP_004199528.1\|782620_782944_-	hypothetical protein	NA	NA	NA	NA
WP_004141558.1\|782946_784611_-\|head,tail	phage head-tail adapter protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.4
WP_004199513.1\|784610_786005_-	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	2.4e-58	36.4
WP_004199526.1\|786089_786542_-	DNA-packaging protein	A3EYX3	Salmonella_phage	1.1e-49	66.4
WP_004199477.1\|786548_786809_-	hypothetical protein	NA	NA	NA	NA
WP_004199520.1\|786792_787026_-	hypothetical protein	NA	NA	NA	NA
WP_004199492.1\|787087_787612_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	2.5e-45	54.1
WP_004199525.1\|787652_788093_-	phage family protein	R9TRJ4	Aeromonas_phage	4.3e-14	43.8
WP_022644607.1\|788098_788446_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071570746.1\|788433_788757_-	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	6.8e-25	55.8
WP_004199500.1\|788746_789340_-	DUF1367 family protein	H9C173	Pectobacterium_phage	7.2e-81	72.1
WP_029499143.1\|789408_789600_-	hypothetical protein	NA	NA	NA	NA
WP_032409673.1\|789780_790119_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	8.6e-47	82.0
WP_022644604.1\|790131_790749_-	hypothetical protein	NA	NA	NA	NA
WP_004141582.1\|790745_790976_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	5.0e-06	37.3
WP_022644602.1\|791695_792481_-	chromosome partitioning protein ParB	C7BGF1	Burkholderia_phage	7.8e-67	54.9
WP_022644601.1\|792520_792754_-	hypothetical protein	NA	NA	NA	NA
WP_022644600.1\|792757_793408_-	hypothetical protein	NA	NA	NA	NA
WP_022644599.1\|793446_794835_-	AAA family ATPase	Q8HA30	Enterobacteria_phage	7.5e-105	46.6
WP_022644598.1\|794831_795800_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	5.5e-38	73.5
WP_016197573.1\|795817_795976_-	hypothetical protein	NA	NA	NA	NA
WP_022644597.1\|796059_796506_-	hypothetical protein	H9C162	Pectobacterium_phage	5.7e-30	56.1
WP_022644596.1\|796566_796761_-	hypothetical protein	NA	NA	NA	NA
WP_025712912.1\|796841_797228_+	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.4e-15	57.8
WP_024623105.1\|798169_798403_+	hypothetical protein	NA	NA	NA	NA
WP_022644594.1\|798410_798656_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.7e-15	59.5
WP_022644593.1\|798685_800815_+	hypothetical protein	H9C157	Pectobacterium_phage	8.0e-98	34.6
WP_022644592.1\|800814_801381_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_004199480.1\|801777_802002_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_016197576.1\|802005_803034_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.4e-94	54.1
804118:804132	attR	NA	NA	NA	NA

DBSCAN-SWA_5

890683 : 983634

Salmonella_phage(56.9%)

terminase,lysis,tail,protease,plate,portal,integrase,capsid,tRNA,head

attL 946209:946227|attR 983709:983727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|890683_891976_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|892066_893410_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|893418_894030_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|894152_898406_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|898541_899036_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004141839.1\|899541_900537_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.3e-62	44.0
WP_002898017.1\|900651_902418_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|902418_904140_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|904184_904886_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|905239_905458_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|905578_907858_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|907888_908206_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|908531_908753_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|908829_910770_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|910766_911882_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|912028_913687_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|914106_914802_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|914917_915817_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|915960_917613_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|917623_918592_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|918803_919238_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|919389_921108_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|921146_922148_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|922158_923601_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|923688_924702_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|924698_925529_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|925560_926700_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|927577_928093_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|928319_929048_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|929068_929800_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|929806_930523_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|930522_931191_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|931374_932106_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|932148_933621_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|933617_934334_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|934412_935540_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|935581_936070_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|936127_936973_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|936969_937923_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|937933_939067_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|939230_940343_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|940691_941171_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|941259_942162_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|942983_943271_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|943473_943737_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|943743_944127_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|944393_946079_+	transporter	NA	NA	NA	NA
946209:946227	attL	NA	NA	NA	NA
WP_000972391.1\|946298_946517_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|946608_947709_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|947705_948191_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|948187_950815_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|950807_950927_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|950941_951241_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|951293_951809_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|951818_952991_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|953129_954206_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|954235_954439_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|954435_955167_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|955170_958122_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|958123_958723_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|958715_959624_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|959610_959973_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|959969_960542_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|960636_961329_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|961325_961772_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|961764_962196_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|962291_962720_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|962716_963100_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|963104_963614_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|963594_963810_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|963813_964017_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|964016_964481_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|964576_965227_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|965230_966289_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|966305_967139_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|967281_969048_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|969047_970073_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|970134_971877_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|972152_972830_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|972944_973178_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|973188_973377_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|973530_975945_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|975941_976799_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|976795_977023_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|977022_977256_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|977323_977665_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|977628_977829_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|977836_978346_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|978378_978600_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|978745_979624_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|979635_980580_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|980678_982163_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151720.1\|982581_983634_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
983709:983727	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1431961 : 1478337

Escherichia_phage(25.93%)

lysis,transposase,integrase,tRNA,head

attL 1425174:1425220|attR 1475409:1475455

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1425174:1425220	attL	NA	NA	NA	NA
WP_004151249.1\|1431961_1434439_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|1434425_1434821_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|1434817_1435288_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004165520.1\|1435287_1435707_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	48.5
WP_004151253.1\|1435806_1439253_-	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151254.1\|1439345_1439849_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|1439976_1440762_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_080031229.1\|1440827_1441541_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|1441530_1441701_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|1441800_1442160_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|1442176_1442647_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|1442940_1443195_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|1443197_1443953_-	DNA-binding protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|1444128_1444806_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|1444858_1445611_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|1445679_1446072_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|1446068_1446494_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|1446496_1446859_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|1446858_1447032_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|1447031_1447412_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|1447414_1447654_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|1447664_1448759_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|1448770_1449199_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|1449202_1450588_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|1450660_1451137_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|1451178_1452183_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|1452157_1453579_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|1453591_1455064_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|1455063_1455666_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|1456036_1456366_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|1456471_1456936_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|1456932_1457463_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|1457465_1457714_-	hypothetical protein	NA	NA	NA	NA
WP_022644626.1\|1458450_1459497_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004151283.1\|1459724_1460414_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|1460410_1460941_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|1460933_1461071_-	YlcG family protein	NA	NA	NA	NA
WP_004151286.1\|1461067_1461703_-	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|1461695_1461866_-	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|1461865_1462321_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151291.1\|1462821_1463469_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151293.1\|1463641_1464484_-	translation repressor RelE	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151294.1\|1464590_1465097_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151295.1\|1465093_1465387_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004151296.1\|1465386_1466817_-	AAA family ATPase	Q9MCT4	Escherichia_phage	2.6e-185	66.7
WP_004151297.1\|1466806_1467706_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.4e-88	54.9
WP_001548453.1\|1467930_1468152_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|1468192_1468426_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|1468553_1469243_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|1469593_1469809_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151303.1\|1469908_1470103_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|1470191_1470476_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151305.1\|1470491_1471337_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151306.1\|1471333_1472014_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|1472010_1472169_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|1472165_1472822_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|1472818_1473586_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|1473582_1473801_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|1473802_1474018_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151317.1\|1474019_1474355_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004151318.1\|1474231_1475395_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.3e-202	87.3
WP_004143017.1\|1475825_1476692_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
1475409:1475455	attR	NA	NA	NA	NA
WP_004143016.1\|1476693_1476906_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|1476951_1478337_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_7

1687892 : 1699546

Enterobacteria_phage(70.0%)

integrase

attL 1688342:1688356|attR 1711399:1711413

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|1687892_1688996_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
1688342:1688356	attL	NA	NA	NA	NA
WP_002889940.1\|1689006_1690260_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|1690612_1691803_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|1691790_1692741_+	cobyrinic acid a,c-diamide synthase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|1692740_1693166_+	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|1693734_1694301_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|1694318_1694564_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|1694560_1695298_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889915.1\|1695839_1696106_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|1696102_1696660_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|1696656_1696884_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|1696880_1697201_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|1697212_1699546_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
1711399:1711413	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3246202 : 3279460

uncultured_Caudovirales_phage(73.33%)

terminase,protease,tail,portal,integrase,capsid,tRNA,head

attL 3263810:3263827|attR 3279805:3279822

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|3246202_3247150_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|3247164_3247674_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|3247802_3248927_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|3248898_3249372_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|3249397_3249940_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|3249944_3250517_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|3250520_3251339_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|3251335_3251593_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|3251568_3252123_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|3257918_3258140_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|3258433_3261544_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|3261556_3262696_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|3263074_3263725_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
3263810:3263827	attL	NA	NA	NA	NA
WP_004150971.1\|3264000_3265227_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|3265319_3266261_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|3266442_3266727_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|3266737_3267517_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_106918304.1\|3267968_3268238_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|3268230_3268419_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|3268411_3268726_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|3268722_3269091_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|3269087_3269453_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|3269452_3271588_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|3271930_3272266_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|3272314_3272827_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|3273090_3274257_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|3274308_3274869_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|3274870_3276112_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|3276108_3276444_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|3276440_3276740_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|3276739_3277183_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_000113647.1\|3277458_3277815_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|3277798_3279460_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
3279805:3279822	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4483985 : 4490892

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|4483985_4484849_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_002912638.1\|4484859_4485633_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_002912636.1\|4485875_4486769_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912635.1\|4487014_4488376_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_002912634.1\|4488694_4489417_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_004151135.1\|4489413_4490892_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3

DBSCAN-SWA_10

4774412 : 4830898

Staphylococcus_phage(16.67%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|4774412_4775159_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_004199384.1\|4775570_4776584_+	fatty acid desaturase	NA	NA	NA	NA
WP_004151439.1\|4776576_4777377_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_002910767.1\|4777363_4777537_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|4778154_4779096_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|4779189_4780179_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004145486.1\|4780204_4781536_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910759.1\|4781563_4782772_+	propionate kinase	NA	NA	NA	NA
WP_004152312.1\|4782800_4785095_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.3e-159	41.8
WP_004219578.1\|4785525_4786641_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002910727.1\|4786750_4787665_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002910725.1\|4787674_4788952_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_002910722.1\|4788948_4789824_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	1.5e-10	25.5
WP_002910721.1\|4789820_4790540_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	26.0
WP_002910720.1\|4790545_4791439_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910719.1\|4791722_4793366_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.8e-136	50.4
WP_002910717.1\|4793415_4793892_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|4793990_4794917_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152313.1\|4795220_4796516_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.3e-61	36.8
WP_004152314.1\|4796530_4797337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152315.1\|4797311_4798211_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910657.1\|4798320_4798803_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|4798993_4799692_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_004899028.1\|4799717_4800302_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|4800371_4800701_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_002910647.1\|4800787_4801033_+	hypothetical protein	NA	NA	NA	NA
WP_002910645.1\|4801269_4802610_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004152316.1\|4802606_4803260_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004152317.1\|4803263_4804961_+	OmpA family protein	NA	NA	NA	NA
WP_004152319.1\|4807924_4809280_+	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|4809280_4809790_+	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|4809786_4810293_+	hypothetical protein	NA	NA	NA	NA
WP_002910586.1\|4810529_4811039_+	hypothetical protein	NA	NA	NA	NA
WP_004153456.1\|4812689_4813613_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.6e-172	97.1
WP_004199326.1\|4813754_4813937_+	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|4813933_4814263_+	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|4814259_4814766_+	hypothetical protein	NA	NA	NA	NA
WP_002910549.1\|4814811_4815042_+	hypothetical protein	NA	NA	NA	NA
WP_004155011.1\|4815147_4816257_+	hypothetical protein	NA	NA	NA	NA
WP_002910547.1\|4816280_4816586_+	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|4816607_4817501_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_004152633.1\|4817684_4818578_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_002910539.1\|4818753_4819647_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_004152632.1\|4819822_4820713_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_000019473.1\|4821049_4822030_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_029779706.1\|4822153_4822390_+	hypothetical protein	NA	NA	NA	NA
WP_004227463.1\|4822578_4822836_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|4823133_4823400_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004198077.1\|4823403_4824561_+	hypothetical protein	NA	NA	NA	NA
WP_004152262.1\|4824544_4827955_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_002910495.1\|4828088_4829852_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002910494.1\|4829851_4830898_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP020111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28973 : 39271

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000516402.1\|28973_29636_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_001549893.1\|30016_30679_+	hypothetical protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_001549892.1\|30765_31005_+	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_001067855.1\|31397_32102_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002904004.1\|32238_33099_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|33119_33881_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|34142_35045_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004199413.1\|36253_39271_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020109

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP020108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP020111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection