Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020107 Escherichia coli strain 13E0767 chromosome, complete genome 7 crisprs DEDDh,csa3,cas3,DinG,c2c9_V-U4,PD-DExK 0 11 13 0

Results visualization

1. NZ_CP020107
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_1 702814-702963 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_2 1290272-1290605 Orphan I-E:NA
5 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_3 1298951-1299284 Orphan I-E
5 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_4 2390431-2390554 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_5 3130895-3130986 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_6 3527066-3527210 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020107_7 3789756-3789868 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 NZ_CP044300 Escherichia coli strain P59A plasmid pP59A-2, complete sequence 78682-78713 0 1.0
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 MG516909 Escherichia coli plasmid pEc1675, complete sequence 65891-65922 0 1.0
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 NZ_CP010244 Escherichia coli strain S56 plasmid B, complete sequence 51511-51542 0 1.0
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 NZ_CP046008 Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence 36671-36702 0 1.0
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 NZ_CP033252 Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence 18151-18182 0 1.0
NZ_CP020107_5 5.1|3130921|40|NZ_CP020107|CRISPRCasFinder 3130921-3130960 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP020107_7 7.1|3789779|24|NZ_CP020107|PILER-CR 3789779-3789802 24 NC_049946 Escherichia virus Lambda_4A7 genome assembly, chromosome: 1 37652-37675 0 1.0
NZ_CP020107_7 7.1|3789779|24|NZ_CP020107|PILER-CR 3789779-3789802 24 LR595861 Escherichia virus Lambda_4C10 genome assembly, chromosome: 1 37935-37958 0 1.0
NZ_CP020107_7 7.2|3789826|25|NZ_CP020107|PILER-CR 3789826-3789850 25 NC_049946 Escherichia virus Lambda_4A7 genome assembly, chromosome: 1 37604-37628 0 1.0
NZ_CP020107_7 7.2|3789826|25|NZ_CP020107|PILER-CR 3789826-3789850 25 LR595861 Escherichia virus Lambda_4C10 genome assembly, chromosome: 1 37887-37911 0 1.0
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 NZ_CP040928 Escherichia coli strain YY76-1 plasmid pYY76-1-1, complete sequence 50104-50135 1 0.969
NZ_CP020107_7 7.1|3789779|24|NZ_CP020107|PILER-CR 3789779-3789802 24 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 44572-44595 1 0.958
NZ_CP020107_7 7.2|3789826|25|NZ_CP020107|PILER-CR 3789826-3789850 25 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 44524-44548 1 0.96
NZ_CP020107_4 4.1|2390474|38|NZ_CP020107|CRISPRCasFinder 2390474-2390511 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP020107_7 7.2|3789826|25|NZ_CP020107|PILER-CR 3789826-3789850 25 NZ_CP015341 Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence 35661-35685 4 0.84
NZ_CP020107_3 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299041-1299072 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 649166-649197 6 0.812
NZ_CP020107_2 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290484-1290515 32 MN445183 Salmonella phage vB_SalM_SA002, complete genome 248903-248934 7 0.781
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 NZ_CP010244 Escherichia coli strain S56 plasmid B, complete sequence 51511-51553 7 0.837
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 NZ_CP033252 Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence 18151-18193 7 0.837
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 NZ_CP044300 Escherichia coli strain P59A plasmid pP59A-2, complete sequence 78671-78713 7 0.837
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 MG516909 Escherichia coli plasmid pEc1675, complete sequence 65880-65922 7 0.837
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 NZ_CP046008 Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence 36660-36702 7 0.837
NZ_CP020107_2 2.9|1290473|43|NZ_CP020107|CRT 1290473-1290515 43 NZ_CP040928 Escherichia coli strain YY76-1 plasmid pYY76-1-1, complete sequence 50104-50146 8 0.814
NZ_CP020107_3 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299041-1299072 32 MT889371 Microbacterium phage DelaGarza, complete genome 35549-35580 8 0.75
NZ_CP020107_3 3.5|1299224|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299224-1299255 32 HM029250 Lactococcus phage 949, complete genome 55071-55102 8 0.75
NZ_CP020107_3 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299041-1299072 32 NZ_CP044425 Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence 203634-203665 9 0.719
NZ_CP020107_3 3.3|1299102|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299102-1299133 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 9 0.719
NZ_CP020107_2 2.2|1290362|32|NZ_CP020107|PILER-CR,CRISPRCasFinder 1290362-1290393 32 NZ_CP049041 Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_4, complete sequence 44275-44306 10 0.688
NZ_CP020107_2 2.5|1290545|32|NZ_CP020107|CRISPRCasFinder 1290545-1290576 32 NZ_CP031652 Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence 106974-107005 10 0.688
NZ_CP020107_3 3.5|1299224|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT 1299224-1299255 32 NC_009760 Bacillus phage 0305phi8-36, complete genome 157057-157088 11 0.656

1. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 0, identity: 1.0

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaactattcatgtagccggtatcgcaga	Protospacer
********************************

2. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to MG516909 (Escherichia coli plasmid pEc1675, complete sequence) position: , mismatch: 0, identity: 1.0

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaactattcatgtagccggtatcgcaga	Protospacer
********************************

3. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP010244 (Escherichia coli strain S56 plasmid B, complete sequence) position: , mismatch: 0, identity: 1.0

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaactattcatgtagccggtatcgcaga	Protospacer
********************************

4. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 0, identity: 1.0

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaactattcatgtagccggtatcgcaga	Protospacer
********************************

5. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP033252 (Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence) position: , mismatch: 0, identity: 1.0

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaactattcatgtagccggtatcgcaga	Protospacer
********************************

6. spacer 5.1|3130921|40|NZ_CP020107|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

7. spacer 7.1|3789779|24|NZ_CP020107|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

8. spacer 7.1|3789779|24|NZ_CP020107|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

9. spacer 7.2|3789826|25|NZ_CP020107|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

10. spacer 7.2|3789826|25|NZ_CP020107|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

11. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP040928 (Escherichia coli strain YY76-1 plasmid pYY76-1-1, complete sequence) position: , mismatch: 1, identity: 0.969

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aatcaaacgattcatgtagccggtatcgcaga	Protospacer
******** ***********************

12. spacer 7.1|3789779|24|NZ_CP020107|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

13. spacer 7.2|3789826|25|NZ_CP020107|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

14. spacer 4.1|2390474|38|NZ_CP020107|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

15. spacer 7.2|3789826|25|NZ_CP020107|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

16. spacer 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.812

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
tcagcttgttgtccgcgatgcggtacgcccgc	Protospacer
 **..************** ******** **.

17. spacer 2.4|1290484|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to MN445183 (Salmonella phage vB_SalM_SA002, complete genome) position: , mismatch: 7, identity: 0.781

aatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
cagcgaagtattcttgtagccggtatcggtga	Protospacer
 * *.** ***** **************  **

18. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to NZ_CP010244 (Escherichia coli strain S56 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.837

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaactattcatgtagccggtatcgcaga	Protospacer
..** *    *********************************

19. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to NZ_CP033252 (Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence) position: , mismatch: 7, identity: 0.837

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaactattcatgtagccggtatcgcaga	Protospacer
..** *    *********************************

20. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 7, identity: 0.837

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaactattcatgtagccggtatcgcaga	Protospacer
..** *    *********************************

21. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to MG516909 (Escherichia coli plasmid pEc1675, complete sequence) position: , mismatch: 7, identity: 0.837

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaactattcatgtagccggtatcgcaga	Protospacer
..** *    *********************************

22. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 7, identity: 0.837

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaactattcatgtagccggtatcgcaga	Protospacer
..** *    *********************************

23. spacer 2.9|1290473|43|NZ_CP020107|CRT matches to NZ_CP040928 (Escherichia coli strain YY76-1 plasmid pYY76-1-1, complete sequence) position: , mismatch: 8, identity: 0.814

gggataaaccgaatcaaactattcatgtagccggtatcgcaga	CRISPR spacer
aagaaattaagaatcaaacgattcatgtagccggtatcgcaga	Protospacer
..** *    ********* ***********************

24. spacer 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to MT889371 (Microbacterium phage DelaGarza, complete genome) position: , mismatch: 8, identity: 0.75

gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
ccgtgcggttgtccgcgatccggtaggcgcgc	Protospacer
 *.  . ****************** *****.

25. spacer 3.5|1299224|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

tcggtggctggattgaaaaagaagata---atctg	CRISPR spacer
atggtggctggacagaaaaagaagagatagat---	Protospacer
 .**********. *********** *   **   

26. spacer 3.2|1299041|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

------gcaatttgttgtccgcgatccggtacgcgcgt	CRISPR spacer
cgcggggc------ttggccgcgatccggtccgcgcga	Protospacer
      **      *** ************ ****** 

27. spacer 3.3|1299102|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ttccagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgcttcaccggaacaccgacggtcac	Protospacer
 .*.  *. **** ** ***************

28. spacer 2.2|1290362|32|NZ_CP020107|PILER-CR,CRISPRCasFinder matches to NZ_CP049041 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_4, complete sequence) position: , mismatch: 10, identity: 0.688

cttgaaaccctgcctgatatatcgccgttatt	CRISPR spacer
ctggaaaccctgcctgatatctcgatcacgcc	Protospacer
** ***************** *** .  ....

29. spacer 2.5|1290545|32|NZ_CP020107|CRISPRCasFinder matches to NZ_CP031652 (Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttatcggtcatcaactatagcgcgtatttact	CRISPR spacer
cggcgcggaatcaactatagcgcttatttgct	Protospacer
. ..  *  ************** *****.**

30. spacer 3.5|1299224|32|NZ_CP020107|PILER-CR,CRISPRCasFinder,CRT matches to NC_009760 (Bacillus phage 0305phi8-36, complete genome) position: , mismatch: 11, identity: 0.656

tcggtggctggattgaaaaagaagataatctg	CRISPR spacer
cgctcatctcgattgaagaagaagataatcaa	Protospacer
.   .. ** *******.************ .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 710173 : 723365 15 Enterobacteria_phage(81.82%) transposase NA
DBSCAN-SWA_2 1315646 : 1322786 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_3 1394197 : 1401961 6 Escherichia_phage(66.67%) integrase,transposase attL 1385432:1385445|attR 1402271:1402284
DBSCAN-SWA_4 1906428 : 1915869 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_5 1928435 : 1995133 73 Enterobacteria_phage(34.09%) terminase,integrase,lysis,holin,portal,plate,head,capsid,transposase,tail,tRNA attL 1955680:1955706|attR 1990050:1990076
DBSCAN-SWA_6 2476492 : 2514517 53 Escherichia_phage(28.12%) terminase,integrase,lysis,head,capsid,tail attL 2504756:2504769|attR 2514823:2514836
DBSCAN-SWA_7 2520416 : 2547476 30 Enterobacteria_phage(41.67%) head,tail,capsid,transposase NA
DBSCAN-SWA_8 2743277 : 2803817 66 Escherichia_phage(46.15%) terminase,integrase,lysis,tail,tRNA attL 2740988:2741003|attR 2802978:2802993
DBSCAN-SWA_9 3103856 : 3196911 103 Enterobacteria_phage(40.58%) terminase,integrase,lysis,holin,protease,head,transposase,tail attL 3129150:3129165|attR 3196583:3196598
DBSCAN-SWA_10 3307051 : 3393566 93 Salmonella_phage(56.9%) terminase,integrase,lysis,protease,portal,plate,head,capsid,tail,tRNA attL 3300013:3300028|attR 3396137:3396152
DBSCAN-SWA_11 3473402 : 3525582 74 Enterobacteria_phage(42.19%) terminase,integrase,lysis,holin,protease,portal,head,capsid,tail attL 3504184:3504199|attR 3526793:3526808
DBSCAN-SWA_12 3743098 : 3799821 68 Enterobacteria_phage(68.42%) terminase,integrase,lysis,protease,portal,head,capsid,transposase,tail attL 3740810:3740826|attR 3800340:3800356
DBSCAN-SWA_13 4121001 : 4180633 50 Enterobacteria_phage(25.0%) integrase,plate,transposase attL 4118829:4118846|attR 4183006:4183023
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage