CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019944	Escherichia coli strain DSM 103246 chromosome, complete genome	8 crisprs	PD-DExK,WYL,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	0	10	17	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019944_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_1

897959-898078

Orphan

Consensus_repeat	Method
CCGCATCCGGCAATCAACGTCTGATGCGACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019944_1

>merge|NZ_CP019944|1|897959-898078|CRISPRCasFinder
CCGCATCCGGCAATCAACGTCTGATGCGACGCTAGCGTGTCTTATCAGACCTACAACAGCTGCCACATGTCGGCTGAGGTGCTCACGCCGCATCCGGCAATCAACGTCTGATGCGACGCT

>NZ_CP019944|1|1|897959-898078|CRISPRCasFinder
CCGCATCCGGCAATCAACGTCTGATGCGACGCT	AGCGTGTCTTATCAGACCTACAACAGCTGCCACATGTCGGCTGAGGTGCTCACG
CCGCATCCGGCAATCAACGTCTGATGCGACGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_075843049.1\|901479_902460_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NZ_CP019944.1\|WP_021577908.1\|887316_889452_+\|ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|237434
NZ_CP019944.1\|WP_001094831.1\|900173_900740_-\|osmotic-shock-tolerance-protein-YggT	unknown	unknown	gnl\|CDD\|376765
NZ_CP019944.1\|WP_080029961.1\|904701_905433_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|272873
NZ_CP019944.1\|WP_000091700.1\|892103_892379_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP019944.1\|WP_080029960.1\|892406_893459_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP019944.1\|WP_000017104.1\|902650_903067_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP019944.1\|WP_000745237.1\|896906_897914_+\|DUF1202-family-protein	unknown	unknown	gnl\|CDD\|284194
NZ_CP019944.1\|WP_000984796.1\|894848_895568_+\|DUF2884-domain-containing-protein	unknown	unknown	gnl\|CDD\|182597
NZ_CP019944.1\|WP_001107564.1\|894338_894665_+\|DUF469-domain-containing-protein	unknown	unknown	gnl\|CDD\|183281
NZ_CP019944.1\|WP_001049791.1\|889501_890758_-\|nucleoside-permease	unknown	unknown	gnl\|CDD\|129967
NZ_CP019944.1\|WP_000239959.1\|898156_899293_-\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP019944.1\|WP_000786911.1\|893619_894339_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP019944.1\|WP_001277222.1\|899886_900177_-\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP019944.1\|WP_000593273.1\|903738_904689_-\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP019944.1\|WP_000394107.1\|895743_896790_+\|L-asparaginase-2	unknown	unknown	gnl\|CDD\|182958
NZ_CP019944.1\|WP_001053178.1\|903066_903630_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NZ_CP019944.1\|WP_000760323.1\|890959_892039_-\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP019944.1\|WP_000997795.1\|900757_901462_-\|pyridoxal-phosphate-homeostasis-protein	unknown	unknown	gnl\|CDD\|143497
NZ_CP019944.1\|WP_001174750.1\|899285_899879_-\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_075843049.1\|901479_902460_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP019944.1\|WP_021577908.1\|887316_889452_+\|ornithine-decarboxylase	gnl\|CDD\|237434	PRK13578, PRK13578, ornithine decarboxylase; Provisional.	0
NZ_CP019944.1\|WP_001094831.1\|900173_900740_-\|osmotic-shock-tolerance-protein-YggT	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	1.9713e-11
NZ_CP019944.1\|WP_080029961.1\|904701_905433_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|272873	TIGR00046, Ribosomal_RNA_small_subunit_methyltransferase_E, RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. [Protein synthesis, tRNA and rRNA base modification].	1.5166e-113
NZ_CP019944.1\|WP_000091700.1\|892103_892379_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	3.17656e-56
NZ_CP019944.1\|WP_080029960.1\|892406_893459_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP019944.1\|WP_000017104.1\|902650_903067_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	2.55065e-78
NZ_CP019944.1\|WP_000745237.1\|896906_897914_+\|DUF1202-family-protein	gnl\|CDD\|284194	pfam06717, DUF1202, Protein of unknown function (DUF1202). This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.	0
NZ_CP019944.1\|WP_000984796.1\|894848_895568_+\|DUF2884-domain-containing-protein	gnl\|CDD\|182597	PRK10626, PRK10626, hypothetical protein; Provisional.	1.42493e-154
NZ_CP019944.1\|WP_001107564.1\|894338_894665_+\|DUF469-domain-containing-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	8.94191e-74
NZ_CP019944.1\|WP_001049791.1\|889501_890758_-\|nucleoside-permease	gnl\|CDD\|129967	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. [Transport and binding proteins, Nucleosides, purines and pyrimidines].	0
NZ_CP019944.1\|WP_000239959.1\|898156_899293_-\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP019944.1\|WP_000786911.1\|893619_894339_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.68332e-106
NZ_CP019944.1\|WP_001277222.1\|899886_900177_-\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	2.89123e-62
NZ_CP019944.1\|WP_000593273.1\|903738_904689_-\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP019944.1\|WP_000394107.1\|895743_896790_+\|L-asparaginase-2	gnl\|CDD\|182958	PRK11096, ansB, L-asparaginase II; Provisional.	0
NZ_CP019944.1\|WP_001053178.1\|903066_903630_-\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	1.27728e-101
NZ_CP019944.1\|WP_000760323.1\|890959_892039_-\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	0
NZ_CP019944.1\|WP_000997795.1\|900757_901462_-\|pyridoxal-phosphate-homeostasis-protein	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	7.52959e-146
NZ_CP019944.1\|WP_001174750.1\|899285_899879_-\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	4.99769e-127

>NZ_CP019944.1|WP_000745237.1|896906_897914_+|DUF1202-family-protein
MKKQWIVGTALLMLMTGNVWADGEPPTENILKDQFKKQYHGILKLDAITLKNLDAKGNQATWSAEGDVSSNDDLYTWVGQLADYELLEQTWTKDKAVKFSAMLTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALNTQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDEFNKQNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWITLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVIK
>NZ_CP019944.1|WP_000394107.1|895743_896790_+|L-asparaginase-2
MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDDVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY
>NZ_CP019944.1|WP_000984796.1|894848_895568_+|DUF2884-domain-containing-protein
MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGENGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIALDKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLVNQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGKDVCSRVVTLEDSRKALVGNLK
>NZ_CP019944.1|WP_001107564.1|894338_894665_+|DUF469-domain-containing-protein
MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSELFDVWWD
>NZ_CP019944.1|WP_000786911.1|893619_894339_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
>NZ_CP019944.1|WP_080029960.1|892406_893459_-|A/G-specific-adenine-glycosylase
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLCKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAATNNSWSLYPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQRQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLAAPVERLLQQLRTGAPV
>NZ_CP019944.1|WP_000091700.1|892103_892379_-|oxidative-damage-protection-protein
MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK
>NZ_CP019944.1|WP_000760323.1|890959_892039_-|membrane-bound-lytic-murein-transglycosylase-MltC
MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
>NZ_CP019944.1|WP_001049791.1|889501_890758_-|nucleoside-permease
MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILINSFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH
>NZ_CP019944.1|WP_021577908.1|887316_889452_+|ornithine-decarboxylase
MKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSRSGILTLLKRTGFHLPVFLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKAELPRPFRLAIIQLGTYDGTVYNARQVIDTIGHLCDYILFDSAWVGYELFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSPLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAHSAYIRGDVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK
>NZ_CP019944.1|WP_000239959.1|898156_899293_-|radical-SAM-family-heme-chaperone-HemW
MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVKTIFIGGGTPSLLSGSAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEPAPRVEFSAYTGLCEDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE
>NZ_CP019944.1|WP_001174750.1|899285_899879_-|XTP/dITP-diphosphatase
MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTGLPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETLKDVPDEQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG
>NZ_CP019944.1|WP_001277222.1|899886_900177_-|YggU-family-protein
MSAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN
>NZ_CP019944.1|WP_001094831.1|900173_900740_-|osmotic-shock-tolerance-protein-YggT
MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTIGLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVAEVLQATGNMLLPGLWMAL
>NZ_CP019944.1|WP_000997795.1|900757_901462_-|pyridoxal-phosphate-homeostasis-protein
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
>NZ_CP019944.1|WP_075843049.1|901479_902460_+|type-IV-pilus-twitching-motility-protein-PilT
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLTENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQRVAEGRL
>NZ_CP019944.1|WP_000017104.1|902650_903067_-|Holliday-junction-resolvase-RuvX
MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYFEQGY
>NZ_CP019944.1|WP_001053178.1|903066_903630_-|YqgE/AlgH-family-protein
MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTMPGVAGHA
>NZ_CP019944.1|WP_000593273.1|903738_904689_-|glutathione-synthase
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ
>NZ_CP019944.1|WP_080029961.1|904701_905433_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIVIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLG

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Crispr_ID: NZ_CP019944_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_2

1116591-1116863

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

4 spacers

The CRISPR arrays of NZ_CP019944_2

>merge|NZ_CP019944|2|1116591-1116863|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGGCCCTATAATGAGAAATAAACTAATTCCTATTGAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAACAATCAGGAGAGGCGCTGGCACACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGATTAGCCGCTTCACTAAACCGCGCGCCAGTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGTACAAAAGAGGCCCCATTCTGGCAGGGCTCGAGTTCCCCGCGCCAGTGGGGATAAACCA

>NZ_CP019944|2|1|1116591-1116863|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCTATAATGAGAAATAAACTAATTCCTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAATCAGGAGAGGCGCTGGCACACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAGCCGCTTCACTAAACCGCGCGCCAGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC
GAGTTCCCCGCGCCAGTGGGGATAAACCA

>NZ_CP019944|2|2|1116591-1116863|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCTATAATGAGAAATAAACTAATTCCTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAATCAGGAGAGGCGCTGGCACACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAGCCGCTTCACTAAACCGCGCGCCAGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC
GAGTTCCCCGCGCCAGTGGGGATAAACCA

>NZ_CP019944|2|1|1116591-1116863|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCTATAATGAGAAATAAACTAATTCCTATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAATCAGGAGAGGCGCTGGCACACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAGCCGCTTCACTAAACCGCGCGCCAGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC
GAGTTCCCCGCGCCAGTGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_000210878.1\|1108756_1110394_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019944.1\|WP_000059300.1\|1121456_1122911_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP019944.1\|WP_000254735.1\|1107330_1107666_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP019944.1\|WP_021577864.1\|1107082_1107331_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP019944.1\|WP_021577861.1\|1119006_1120284_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP019944.1\|WP_001199973.1\|1115580_1116252_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019944.1\|WP_033814786.1\|1126694_1126955_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP019944.1\|WP_000944226.1\|1114805_1115408_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP019944.1\|WP_001130266.1\|1126102_1126678_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP019944.1\|WP_021577863.1\|1107737_1108529_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019944.1\|WP_001383470.1\|1124319_1125099_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP019944.1\|WP_021577860.1\|1120601_1121387_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP019944.1\|WP_001243482.1\|1113913_1114792_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP019944.1\|WP_001313221.1\|1111839_1112754_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP019944.1\|WP_033814785.1\|1125095_1125956_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP019944.1\|WP_021577862.1\|1117501_1118980_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP019944.1\|WP_033814787.1\|1126945_1128217_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP019944.1\|WP_047623594.1\|1123004_1124342_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP019944.1\|WP_001217978.1\|1112750_1113899_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP019944.1\|WP_000036723.1\|1110481_1111780_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_000210878.1\|1108756_1110394_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019944.1\|WP_000059300.1\|1121456_1122911_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.77396e-83
NZ_CP019944.1\|WP_000254735.1\|1107330_1107666_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	6.85168e-74
NZ_CP019944.1\|WP_021577864.1\|1107082_1107331_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	9.15005e-48
NZ_CP019944.1\|WP_021577861.1\|1119006_1120284_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.1199e-29
NZ_CP019944.1\|WP_001199973.1\|1115580_1116252_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP019944.1\|WP_033814786.1\|1126694_1126955_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	5.89689e-42
NZ_CP019944.1\|WP_000944226.1\|1114805_1115408_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.21919e-77
NZ_CP019944.1\|WP_001130266.1\|1126102_1126678_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP019944.1\|WP_021577863.1\|1107737_1108529_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.41027e-156
NZ_CP019944.1\|WP_001383470.1\|1124319_1125099_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	5.5029e-64
NZ_CP019944.1\|WP_021577860.1\|1120601_1121387_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.00269e-138
NZ_CP019944.1\|WP_001243482.1\|1113913_1114792_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	7.71052e-89
NZ_CP019944.1\|WP_001313221.1\|1111839_1112754_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.18265e-104
NZ_CP019944.1\|WP_033814785.1\|1125095_1125956_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.17375e-86
NZ_CP019944.1\|WP_021577862.1\|1117501_1118980_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.91434e-109
NZ_CP019944.1\|WP_033814787.1\|1126945_1128217_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.03443e-124
NZ_CP019944.1\|WP_047623594.1\|1123004_1124342_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.21596e-51
NZ_CP019944.1\|WP_001217978.1\|1112750_1113899_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.85887e-61
NZ_CP019944.1\|WP_000036723.1\|1110481_1111780_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP019944.1|WP_001199973.1|1115580_1116252_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019944.1|WP_000944226.1|1114805_1115408_-|LemA-family-protein
MLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>NZ_CP019944.1|WP_001243482.1|1113913_1114792_-|YgcG-family-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTKQIKALTQKSHAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSGQIIRNSIIPAFKNGDLAGGLQKGLSDIENRLAGNNLATIAPADHPLPFSGWWALLAWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLTTLLCFATPFLAVAIAFTPFGKKVRDLMRDANQPSRHTRSNSFSHYSSSSSSSFDNDNFSGGGGGASGRW
>NZ_CP019944.1|WP_001217978.1|1112750_1113899_-|YgcG-family-protein
MRIFLLLLMLCGFQVFAERLPSVNDLTGTLTTEEQSVLNQQLKTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEQMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANISPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWRFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSVVCFSLLLATTCKQRLAVVFNLCRVFPMMLAPKNKNAKVKKQKKTPQVRKSGRNSLFVVMLIIIVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSGRW
>NZ_CP019944.1|WP_001313221.1|1111839_1112754_-|YgcG-family-protein
MIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKERASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGASGRW
>NZ_CP019944.1|WP_000036723.1|1110481_1111780_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019944.1|WP_000210878.1|1108756_1110394_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP019944.1|WP_021577863.1|1107737_1108529_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFSSIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEEIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFELRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP019944.1|WP_000254735.1|1107330_1107666_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRAKGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP019944.1|WP_021577864.1|1107082_1107331_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSIKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP019944.1|WP_021577862.1|1117501_1118980_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPETLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDTMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP019944.1|WP_021577861.1|1119006_1120284_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADIAPTTANSK
>NZ_CP019944.1|WP_021577860.1|1120601_1121387_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKKMIENQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_CP019944.1|WP_000059300.1|1121456_1122911_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP019944.1|WP_047623594.1|1123004_1124342_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVSLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP019944.1|WP_001383470.1|1124319_1125099_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRIRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP019944.1|WP_033814785.1|1125095_1125956_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAALAGWLAAQDFSGCTLAHWQIEPQPVVVEQVLDALVEQWQRTPANVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGTDKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARWVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVCNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP019944.1|WP_001130266.1|1126102_1126678_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP019944.1|WP_033814786.1|1126694_1126955_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPGGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP019944.1|WP_033814787.1|1126945_1128217_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVVEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTYPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP019944_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_3

1142549-1142943

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019944_3

>merge|NZ_CP019944|3|1142549-1142943|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTACGACTTCCGCACGCACCCACCGTTTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGGGCTAGGAGGAAGAGCATCATTAACATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAACCCCTCGCGCATCGAGTCAAATGTCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGTGTCGCCGTTACAGATTTCAGTCTGTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGTCCAGTGATGCTTTCTGGTGCTCGAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGATTTTATGTGCCGCGTTGAGGCGTGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP019944|3|2|1142549-1142943|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACCCCTCGCGCATCGAGTCAAATGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP019944|3|3|1142549-1142943|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACCCCTCGCGCATCGAGTCAAATGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP019944|3|2|1142549-1142943|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACGACTTCCGCACGCACCCACCGTTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCTAGGAGGAAGAGCATCATTAACATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACCCCTCGCGCATCGAGTCAAATGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGTGTCGCCGTTACAGATTTCAGTCTGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGATTTTATGTGCCGCGTTGAGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_080029981.1\|1138803_1139853_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019944.1\|WP_021577855.1\|1136693_1138256_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019944.1\|WP_021577854.1\|1139863_1140610_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019944.1\|WP_021577856.1\|1133904_1136604_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019944.1\|WP_021577852.1\|1141238_1142162_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019944.1\|WP_001173672.1\|1146650_1147256_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019944.1\|WP_000063176.1\|1142158_1142452_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019944.1\|WP_000956458.1\|1133560_1133713_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP019944.1\|WP_001246104.1\|1147305_1147629_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019944.1\|WP_000568924.1\|1149338_1150388_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019944.1\|WP_021577853.1\|1140591_1141242_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019944.1\|WP_001090361.1\|1145223_1146651_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019944.1\|WP_001295182.1\|1150368_1151130_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019944.1\|WP_080029982.1\|1143024_1144062_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019944.1\|WP_000039866.1\|1132560_1133295_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019944.1\|WP_000517476.1\|1147822_1148134_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019944.1\|WP_000246154.1\|1148152_1148863_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019944.1\|WP_000029319.1\|1138252_1138789_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019944.1\|WP_001219242.1\|1148862_1149342_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019944.1\|WP_023154953.1\|1144313_1145222_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_080029981.1\|1138803_1139853_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.7857e-152
NZ_CP019944.1\|WP_021577855.1\|1136693_1138256_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.17204e-173
NZ_CP019944.1\|WP_021577854.1\|1139863_1140610_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.79617e-48
NZ_CP019944.1\|WP_021577856.1\|1133904_1136604_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019944.1\|WP_021577852.1\|1141238_1142162_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.72092e-153
NZ_CP019944.1\|WP_001173672.1\|1146650_1147256_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.3035e-147
NZ_CP019944.1\|WP_000063176.1\|1142158_1142452_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP019944.1\|WP_000956458.1\|1133560_1133713_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP019944.1\|WP_001246104.1\|1147305_1147629_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP019944.1\|WP_000568924.1\|1149338_1150388_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019944.1\|WP_021577853.1\|1140591_1141242_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	8.48661e-92
NZ_CP019944.1\|WP_001090361.1\|1145223_1146651_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019944.1\|WP_001295182.1\|1150368_1151130_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP019944.1\|WP_080029982.1\|1143024_1144062_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019944.1\|WP_000039866.1\|1132560_1133295_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.29883e-136
NZ_CP019944.1\|WP_000517476.1\|1147822_1148134_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP019944.1\|WP_000246154.1\|1148152_1148863_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.58139e-121
NZ_CP019944.1\|WP_000029319.1\|1138252_1138789_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.02591e-28
NZ_CP019944.1\|WP_001219242.1\|1148862_1149342_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP019944.1\|WP_023154953.1\|1144313_1145222_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>NZ_CP019944.1|WP_000063176.1|1142158_1142452_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP019944.1|WP_021577852.1|1141238_1142162_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTRIRTHIPVGSVAYIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQLAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP019944.1|WP_021577853.1|1140591_1141242_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFVPELRTGQQLCFNLRANPTICKAGKRHDLLMEAKRQMRGQAEGSDVWLHQQQAALDWLAVQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP019944.1|WP_021577854.1|1139863_1140610_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYHQYQEHFHDLKIALPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP019944.1|WP_080029981.1|1138803_1139853_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRIAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALEGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP019944.1|WP_000029319.1|1138252_1138789_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP019944.1|WP_021577855.1|1136693_1138256_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLLLEHAFQFGPDSPSFMQDFEELRVKVSSIASLLPDTPGKQTKERNKDHFIKRGTIQHICLHCVPLALFSIQLNAPKGGRGYYPGLRGGGPLTTLIELLEYQGNPQPPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTCELDGAVITDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICDSQSGALLSLMALKNNGVQYVMWRHPLTPYRMPLKEGGEFYSVKPQPGGLIWRDWLGLIEEGKSKNNTELPAQVVKLFNASNLKQTKIGLWGFGYDFEDMKVRCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDPDELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>NZ_CP019944.1|WP_021577856.1|1133904_1136604_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRDEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSECEELLPASSLSTRKLKRVIAMWMPMTTGHHGRPPDRIDELDNFLPEDKVAARDFLLEIKALCPLIEIPTFWDNDEGVELLKQLSWYISATVVLADWTGSSTRFFPRVAHPMDIKDYWQKTLVQAQNALTVFPPKAETAPFTGVNTLFPFIEHPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAARKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLTHSARTLMDRFNESLWSGDLVGSEEPDEQAFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKNCNLKRSSQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFMLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYASGAHAWEMSVARVRRSWWKKHRDEFSLLEGEAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVD
>NZ_CP019944.1|WP_000956458.1|1133560_1133713_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP019944.1|WP_000039866.1|1132560_1133295_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALRDLNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019944.1|WP_080029982.1|1143024_1144062_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKVPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP019944.1|WP_023154953.1|1144313_1145222_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQQGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP019944.1|WP_001090361.1|1145223_1146651_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP019944.1|WP_001173672.1|1146650_1147256_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELGNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP019944.1|WP_001246104.1|1147305_1147629_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP019944.1|WP_000517476.1|1147822_1148134_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP019944.1|WP_000246154.1|1148152_1148863_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVTRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP019944.1|WP_001219242.1|1148862_1149342_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP019944.1|WP_000568924.1|1149338_1150388_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP019944.1|WP_001295182.1|1150368_1151130_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP019944_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_4

1731016-1731135

Orphan

Consensus_repeat	Method
GCGACGCTGGCGCGTCTTATCAGGCCTACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019944_4

>merge|NZ_CP019944|4|1731016-1731135|CRISPRCasFinder
GCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGAGGCGACGCTGGCGCATCTTATCAGGCCTACAAA

>NZ_CP019944|4|4|1731016-1731135|CRISPRCasFinder
GCGACGCTGGCGCGTCTTATCAGGCCTACAAA	TCCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGAG
GCGACGCTGGCGCATCTTATCAGGCCTACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_000332037.1\|1729821_1730952_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP019944.1\|WP_001339197.1\|1726326_1727535_+\|IS4-like-element-ISVsa5-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP019944.1\|WP_001613489.1\|1724087_1725167_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP019944.1\|WP_080030060.1\|1741686_1743375_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP019944.1\|WP_001075172.1\|1731185_1733471_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP019944.1\|WP_021577727.1\|1748533_1750183_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP019944.1\|WP_080030059.1\|1734166_1737901_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP019944.1\|WP_000857257.1\|1720823_1722452_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP019944.1\|WP_001281220.1\|1738910_1741538_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP019944.1\|WP_000580275.1\|1752252_1753575_-\|TIGR00366-family-protein	unknown	unknown	gnl\|CDD\|280776
NZ_CP019944.1\|WP_000124824.1\|1729567_1729822_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP019944.1\|WP_123057586.1\|1744138_1748533_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP019944.1\|WP_000176730.1\|1725211_1726090_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP019944.1\|WP_000948724.1\|1722724_1724083_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP019944.1\|WP_000301028.1\|1728863_1729514_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP019944.1\|WP_000660231.1\|1727592_1728783_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP019944.1\|WP_001209887.1\|1719574_1720834_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP019944.1\|WP_000990764.1\|1738041_1738764_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP019944.1\|WP_001225837.1\|1750187_1750964_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP019944.1\|WP_080030061.1\|1743371_1743995_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_000332037.1\|1729821_1730952_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP019944.1\|WP_001339197.1\|1726326_1727535_+\|IS4-like-element-ISVsa5-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	7.26216e-11
NZ_CP019944.1\|WP_001613489.1\|1724087_1725167_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP019944.1\|WP_080030060.1\|1741686_1743375_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019944.1\|WP_001075172.1\|1731185_1733471_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP019944.1\|WP_021577727.1\|1748533_1750183_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	9.28246e-127
NZ_CP019944.1\|WP_080030059.1\|1734166_1737901_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP019944.1\|WP_000857257.1\|1720823_1722452_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP019944.1\|WP_001281220.1\|1738910_1741538_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP019944.1\|WP_000580275.1\|1752252_1753575_-\|TIGR00366-family-protein	gnl\|CDD\|280776	pfam02667, SCFA_trans, Short chain fatty acid transporter. This family consists of two sequences annotated as short chain fatty acid transporters, however, there are no references giving details of experimental characterization of this function.	0
NZ_CP019944.1\|WP_000124824.1\|1729567_1729822_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	7.27152e-52
NZ_CP019944.1\|WP_123057586.1\|1744138_1748533_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP019944.1\|WP_000176730.1\|1725211_1726090_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.04797e-45
NZ_CP019944.1\|WP_000948724.1\|1722724_1724083_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP019944.1\|WP_000301028.1\|1728863_1729514_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	4.41923e-159
NZ_CP019944.1\|WP_000660231.1\|1727592_1728783_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.20553e-100
NZ_CP019944.1\|WP_001209887.1\|1719574_1720834_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP019944.1\|WP_000990764.1\|1738041_1738764_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.15141e-171
NZ_CP019944.1\|WP_001225837.1\|1750187_1750964_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.68073e-151
NZ_CP019944.1\|WP_080030061.1\|1743371_1743995_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.60464e-138

>NZ_CP019944.1|WP_000332037.1|1729821_1730952_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP019944.1|WP_000124824.1|1729567_1729822_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVILRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_CP019944.1|WP_000301028.1|1728863_1729514_+|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP019944.1|WP_000660231.1|1727592_1728783_+|MFS-transporter
MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLHASPDKAGLLVTLFLIAAIVIRPFAGQWVGKYSNKTILVLSSLAFLVVTALYPFCHSIESLLFIRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWEAFNMAFWLCTGVAAVGIILSLIMTVPPVISHADGSKPKMGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELNLMSAASNFLLCYAIFLMICRTFTGNVCDKKGPKYVVYPCLLFFTVGLVVLGYTQGSVMMVVSGALIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGLALGACVMGMMVAHTGYRMIYLLGALLVVVAGGVYALQMKGKSGVALVVAKEIH
>NZ_CP019944.1|WP_001339197.1|1726326_1727535_+|IS4-like-element-ISVsa5-family-transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALGKL
>NZ_CP019944.1|WP_000176730.1|1725211_1726090_-|LysR-family-transcriptional-regulator
MTLTQIHTLLAVLDYGGFTEASKRLFMTQSAVSQAIATLEQELGVEILIRERRKALQLTDAGSRIASHLRAITREVNAVKEIAEQEKHNPTRTLRIGCFPSACACILPGIIRYFETYHPQIKIIPYEENSSEIIDSVQNETIDAGFVHFPVTGMYSVPVYQDKFTVVLPDAHPLAKNNAISVEELVGEPLIISKGRYELSIMALFKEKNITPVIKYEFNHPDTAISFIRQGLGIALLPELTLKAVAGELCSVPLEPTFYRQISLLVKEAPVEGSPLFLLQMCMETLVVKGIL
>NZ_CP019944.1|WP_001613489.1|1724087_1725167_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLHKDN
>NZ_CP019944.1|WP_000948724.1|1722724_1724083_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHQELLQKRNGG
>NZ_CP019944.1|WP_000857257.1|1720823_1722452_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP019944.1|WP_001209887.1|1719574_1720834_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQAVTDIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDQTLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP019944.1|WP_001075172.1|1731185_1733471_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP019944.1|WP_080030059.1|1734166_1737901_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAAIDSCQGYDIKASCHASRQSLSGITQAWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAIDLRVTNAVFRNNIANDGKGGAIYTINNDIYLSDDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLADENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGVITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFVHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGSYVMAGAQSMALTGDIVVDAGAVLSLEGDAADLAALQDDPQSIVLNGGVLDLSDFSTWQSGTSYKDGLEVSGSSGTVIGSQDVVDLAGGNDMHIGGDGKDGVYVVIDAGDGQVSLANDNQYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADIFPYASSLWVGDGATFVSGADQDIQSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTSLETDSLTYLADVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSASDQLVLNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPAPTPDPDPTPDPIPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAAGQLAQHEDTSTVQLSGDLFRGRWGTDGEWMLGIVGGYSDNQGDSRSSMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDNWLQYAWFNNDVSEQDDGADHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP019944.1|WP_000990764.1|1738041_1738764_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>NZ_CP019944.1|WP_001281220.1|1738910_1741538_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP019944.1|WP_080030060.1|1741686_1743375_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFSAIALLSAGFWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLNKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKMLVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP019944.1|WP_080030061.1|1743371_1743995_+|DUF1175-domain-containing-protein
MRHVLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKNNGFSNQYLPPEMTLTPEQRQLAQNWNQGNGKTAPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP019944.1|WP_123057586.1|1744138_1748533_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELHLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLDGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSNTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLMQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFDKPGNYNLTLRDKDGLILAGLSHAVSGKGSMSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSGKNLYMKWSMPTVYRVGDKPSAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLAQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDPRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP019944.1|WP_021577727.1|1748533_1750183_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKASTLPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTSVKPGVLNGRYRVTFANGNHITFVSHGETTLLTEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQAMAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP019944.1|WP_001225837.1|1750187_1750964_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIHGKIKNYAAAGKVQQGRLVVNGASMPQRVESDGSFARPYIFTEGSNSVQVISPDGRSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP019944.1|WP_000580275.1|1752252_1753575_-|TIGR00366-family-protein
MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF

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Crispr_ID: NZ_CP019944_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_5

2369522-2369645

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019944_5

>merge|NZ_CP019944|5|2369522-2369645|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP019944|5|5|2369522-2369645|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_028132273.1\|2365738_2366524_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP019944.1\|WP_001295403.1\|2358975_2360388_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP019944.1\|WP_059321244.1\|2378796_2379966_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP019944.1\|WP_080030119.1\|2362256_2364359_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP019944.1\|WP_080030120.1\|2365073_2365742_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP019944.1\|WP_047668985.1\|2367351_2368956_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP019944.1\|WP_080030121.1\|2369959_2371216_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP019944.1\|WP_000212678.1\|2369081_2369387_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP019944.1\|WP_000504352.1\|2364362_2365010_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP019944.1\|WP_000269493.1\|2376288_2377221_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP019944.1\|WP_000528342.1\|2360944_2361154_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP019944.1\|WP_001070230.1\|2361609_2362236_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP019944.1\|WP_080030123.1\|2374964_2376176_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP019944.1\|WP_000102278.1\|2378541_2378631_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP019944.1\|WP_000190982.1\|2377217_2378243_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP019944.1\|WP_024181999.1\|2366527_2367340_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP019944.1\|WP_000493947.1\|2372844_2373486_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP019944.1\|WP_080030122.1\|2371256_2372630_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP019944.1\|WP_000098896.1\|2373525_2374674_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP019944.1\|WP_000007283.1\|2380111_2380693_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_028132273.1\|2365738_2366524_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	7.26937e-164
NZ_CP019944.1\|WP_001295403.1\|2358975_2360388_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP019944.1\|WP_059321244.1\|2378796_2379966_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.68643e-98
NZ_CP019944.1\|WP_080030119.1\|2362256_2364359_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP019944.1\|WP_080030120.1\|2365073_2365742_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.91815e-75
NZ_CP019944.1\|WP_047668985.1\|2367351_2368956_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP019944.1\|WP_080030121.1\|2369959_2371216_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP019944.1\|WP_000212678.1\|2369081_2369387_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP019944.1\|WP_000504352.1\|2364362_2365010_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.81741e-122
NZ_CP019944.1\|WP_000269493.1\|2376288_2377221_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP019944.1\|WP_000528342.1\|2360944_2361154_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP019944.1\|WP_001070230.1\|2361609_2362236_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP019944.1\|WP_080030123.1\|2374964_2376176_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP019944.1\|WP_000190982.1\|2377217_2378243_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP019944.1\|WP_024181999.1\|2366527_2367340_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	5.5408e-175
NZ_CP019944.1\|WP_000493947.1\|2372844_2373486_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP019944.1\|WP_080030122.1\|2371256_2372630_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP019944.1\|WP_000098896.1\|2373525_2374674_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP019944.1\|WP_000007283.1\|2380111_2380693_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138

>NZ_CP019944.1|WP_000212678.1|2369081_2369387_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP019944.1|WP_047668985.1|2367351_2368956_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLSSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP019944.1|WP_024181999.1|2366527_2367340_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNVRIATAGYAVQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP019944.1|WP_028132273.1|2365738_2366524_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP019944.1|WP_080030120.1|2365073_2365742_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLSKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP019944.1|WP_000504352.1|2364362_2365010_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP019944.1|WP_080030119.1|2362256_2364359_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITFEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP019944.1|WP_001070230.1|2361609_2362236_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP019944.1|WP_000528342.1|2360944_2361154_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP019944.1|WP_001295403.1|2358975_2360388_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP019944.1|WP_080030121.1|2369959_2371216_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVTTGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTAKGDSVTFSIGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP019944.1|WP_080030122.1|2371256_2372630_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPTILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLAAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>NZ_CP019944.1|WP_000493947.1|2372844_2373486_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP019944.1|WP_000098896.1|2373525_2374674_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP019944.1|WP_080030123.1|2374964_2376176_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCKEVGYQNHGNAEVAHSESH
>NZ_CP019944.1|WP_000269493.1|2376288_2377221_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP019944.1|WP_000190982.1|2377217_2378243_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP019944.1|WP_000102278.1|2378541_2378631_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP019944.1|WP_059321244.1|2378796_2379966_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCIANS
>NZ_CP019944.1|WP_000007283.1|2380111_2380693_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP019944_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_6

3255904-3255995

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019944_6

>merge|NZ_CP019944|6|3255904-3255995|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGATCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP019944|6|6|3255904-3255995|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGATCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_021577295.1\|3252535_3253336_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP019944.1\|WP_001325510.1\|3254461_3255790_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP019944.1\|WP_000939660.1\|3245155_3245362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019944.1\|WP_000420641.1\|3260347_3261268_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP019944.1\|WP_021577292.1\|3261724_3262324_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP019944.1\|WP_001120120.1\|3266168_3266861_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP019944.1\|WP_001345643.1\|3251437_3252130_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP019944.1\|WP_001151437.1\|3256418_3257015_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP019944.1\|WP_021577294.1\|3253345_3253936_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP019944.1\|WP_001028095.1\|3253946_3254441_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP019944.1\|WP_001126784.1\|3252141_3252528_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP019944.1\|WP_021577291.1\|3262320_3264867_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP019944.1\|WP_000191701.1\|3249420_3250059_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP019944.1\|WP_000024560.1\|3261267_3261573_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP019944.1\|WP_001143120.1\|3257035_3257263_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP019944.1\|WP_001044306.1\|3257300_3258542_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP019944.1\|WP_001301233.1\|3250346_3251438_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP019944.1\|WP_021577297.1\|3245419_3249382_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP019944.1\|WP_021577293.1\|3258834_3260088_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP019944.1\|WP_001230244.1\|3264866_3266039_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_021577295.1\|3252535_3253336_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.46007e-139
NZ_CP019944.1\|WP_001325510.1\|3254461_3255790_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP019944.1\|WP_000420641.1\|3260347_3261268_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP019944.1\|WP_021577292.1\|3261724_3262324_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.24745e-81
NZ_CP019944.1\|WP_001120120.1\|3266168_3266861_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	3.61504e-136
NZ_CP019944.1\|WP_001345643.1\|3251437_3252130_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.60527e-169
NZ_CP019944.1\|WP_001143120.1\|3257035_3257263_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP019944.1\|WP_021577294.1\|3253345_3253936_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	2.32218e-129
NZ_CP019944.1\|WP_001028095.1\|3253946_3254441_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP019944.1\|WP_001126784.1\|3252141_3252528_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.00775e-84
NZ_CP019944.1\|WP_021577291.1\|3262320_3264867_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP019944.1\|WP_000191701.1\|3249420_3250059_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP019944.1\|WP_000024560.1\|3261267_3261573_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP019944.1\|WP_001230244.1\|3264866_3266039_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP019944.1\|WP_001044306.1\|3257300_3258542_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP019944.1\|WP_001301233.1\|3250346_3251438_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP019944.1\|WP_021577297.1\|3245419_3249382_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP019944.1\|WP_021577293.1\|3258834_3260088_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP019944.1\|WP_001151437.1\|3256418_3257015_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133

>NZ_CP019944.1|WP_001325510.1|3254461_3255790_+|pyrimidine-utilization-transport-protein-G
MAMFGLPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASGFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP019944.1|WP_001028095.1|3253946_3254441_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP019944.1|WP_021577294.1|3253345_3253936_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARIWFTSSPQLAEETAFRNSSMQAAYLIIACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP019944.1|WP_021577295.1|3252535_3253336_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSITQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAAHAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHAVRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP019944.1|WP_001126784.1|3252141_3252528_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINETYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP019944.1|WP_001345643.1|3251437_3252130_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFVQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP019944.1|WP_001301233.1|3250346_3251438_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPVLTQEVA
>NZ_CP019944.1|WP_000191701.1|3249420_3250059_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP019944.1|WP_021577297.1|3245419_3249382_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANEGDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPCEVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPSGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQIMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSTVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP019944.1|WP_000939660.1|3245155_3245362_-|hypothetical-protein
MLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP019944.1|WP_001151437.1|3256418_3257015_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP019944.1|WP_001143120.1|3257035_3257263_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP019944.1|WP_001044306.1|3257300_3258542_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK
>NZ_CP019944.1|WP_021577293.1|3258834_3260088_-|YccE-family-protein
MGNIHGISCTANNYLKQAWNDIKNEYEKNKTYSITLFENTLVCFIRLYKEIRRQQAEDYIPCLECDSLEKEFEEIQNDNDLSLFMKTLRTNDKQIYSGVSGGITYTIQYVEDVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVYSDYCFDDENISVQPEWINTPGISDLDSGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKQTIEALVDAAFYDLREDVKTLFGVDLQSDNKIQGVGSPMSWSFLFFKKQFIDSCLNKEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLAVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLINTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
>NZ_CP019944.1|WP_000420641.1|3260347_3261268_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP019944.1|WP_000024560.1|3261267_3261573_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP019944.1|WP_021577292.1|3261724_3262324_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVDELENRVATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALRQWLPEFASRCRQYDSFGFYAALSQLLLVLVEGDHQNR
>NZ_CP019944.1|WP_021577291.1|3262320_3264867_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQTYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKL
>NZ_CP019944.1|WP_001230244.1|3264866_3266039_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP019944.1|WP_001120120.1|3266168_3266861_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQVQPLTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP019944_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_7

3440419-3440567

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019944_7

>merge|NZ_CP019944|7|3440419-3440567|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTCGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP019944|7|7|3440419-3440567|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP019944|7|3|3440427-3440567|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGTTCGCTG	CAACCGCTAGCCAAGACGGTAGGTTTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_080030241.1\|3452470_3454123_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP019944.1\|WP_000599806.1\|3448190_3449849_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP019944.1\|WP_000797372.1\|3422451_3423408_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	unknown	unknown	gnl\|CDD\|379744
NZ_CP019944.1\|WP_087205686.1\|3427225_3428286_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP019944.1\|WP_000520781.1\|3443088_3443409_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP019944.1\|WP_000488716.1\|3450274_3450970_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP019944.1\|WP_000410785.1\|3443731_3443956_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP019944.1\|WP_001355621.1\|3447237_3448194_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP019944.1\|WP_000746460.1\|3445971_3447087_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP019944.1\|WP_069723165.1\|3423418_3424627_+\|DUF4236-domain-containing-protein	unknown	unknown	gnl\|CDD\|379423
NZ_CP019944.1\|WP_080030237.1\|3429133_3432076_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019944.1\|WP_001303889.1\|3435584_3435881_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP019944.1\|WP_000282211.1\|3436992_3438810_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019944.1\|WP_001182420.1\|3421372_3422452_+\|cysteine-protease-StiP-family-protein	unknown	unknown	gnl\|CDD\|378594
NZ_CP019944.1\|WP_000073819.1\|3433790_3434225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019944.1\|WP_000188180.1\|3444028_3445975_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP019944.1\|WP_000491140.1\|3451427_3452327_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP019944.1\|WP_080030239.1\|3440781_3443058_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP019944.1\|WP_001176768.1\|3424644_3425112_+\|tellurium-resistance-protein-TerW	unknown	unknown	unknown
NZ_CP019944.1\|WP_000279872.1\|3438996_3440199_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_080030241.1\|3452470_3454123_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP019944.1\|WP_000599806.1\|3448190_3449849_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP019944.1\|WP_000797372.1\|3422451_3423408_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	gnl\|CDD\|379744	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold. This family of TIM-Barrel fold C-C bond lyase is related to citrate-lyase. These genes are found in the biosynthetic operon, with other enzymatic domains, associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	2.69469e-154
NZ_CP019944.1\|WP_087205686.1\|3427225_3428286_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.12331e-72
NZ_CP019944.1\|WP_000520781.1\|3443088_3443409_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP019944.1\|WP_000488716.1\|3450274_3450970_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP019944.1\|WP_000410785.1\|3443731_3443956_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP019944.1\|WP_001355621.1\|3447237_3448194_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.27645e-131
NZ_CP019944.1\|WP_000746460.1\|3445971_3447087_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP019944.1\|WP_069723165.1\|3423418_3424627_+\|DUF4236-domain-containing-protein	gnl\|CDD\|379423	pfam14020, DUF4236, Protein of unknown function (DUF4236). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.	4.28368e-26
NZ_CP019944.1\|WP_001303889.1\|3435584_3435881_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	1.65797e-22
NZ_CP019944.1\|WP_001182420.1\|3421372_3422452_+\|cysteine-protease-StiP-family-protein	gnl\|CDD\|378594	pfam11202, PRTase_1, Phosphoribosyl transferase (PRTase). This PRTase family is fused to a C-terminal RNA binding Pelota domain, pfam01248. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	1.19689e-123
NZ_CP019944.1\|WP_000188180.1\|3444028_3445975_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP019944.1\|WP_000491140.1\|3451427_3452327_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.67946e-118
NZ_CP019944.1\|WP_080030239.1\|3440781_3443058_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP019944.1\|WP_000279872.1\|3438996_3440199_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.82526e-55

>NZ_CP019944.1|WP_000279872.1|3438996_3440199_-|tyrosine-type-recombinase/integrase
MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK
>NZ_CP019944.1|WP_000282211.1|3436992_3438810_+|hypothetical-protein
MYNFITIMYDVFSCFGVLAKNQNSRDIRNIKNFSSHQHSLGDMFDELINIIDKEQVLSKEQRKVIFRRYEDLYVKLMHYSVFTDKTHQIIKQKYFNDIVPMILALDIRNTYRPDNEMAFYYHIHSFLTQIPDNEDDIYHAARTYLRNYVKLCLSGYTPANAHFKDIFDGVYEFIRNIRKNSTPGKTKLIATINTCKETCKHLLYLSNEDKEKIISDLDKVQVACYYLTILLAFERRTSLTSTLATLYKMLISEREVSEYECQLLYLTNPIDVMNILNKYIYYFPNENSPFYTLKIDSALSWDAIDAIRDYSISDIYLYPEQKTINCVVEIENIVFGGYIYTLNNGVTLQNIENSLKDSSCHYVLNGYTEFVNCLRQLTSGKTESVHRTINKLNYEKLPFGFIIAAFAILKIAFKIKFSKNHVNIRALLNDINYFMTYQGESINLISLDHEYPESCLQNDTNTYLLGRVIFLYNSMIYKFINCQEHETNNIHSAMINNLLQEVDIALGKINDIIDSRNISTPHELANILTREKILTTREKKGNLISLFDGFTLCHCVGMITFLIHYLRTPEEKVENIFMLYGADKNNKLRRRLIYDALGIIQSQQE
>NZ_CP019944.1|WP_001303889.1|3435584_3435881_-|AlpA-family-transcriptional-regulator
MPDQSGHCRTPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPVRLGSGSVGWRSSAIDEWLTLHTVPARSAVKGVNDEVRHTLSSDMTMSR
>NZ_CP019944.1|WP_000073819.1|3433790_3434225_-|hypothetical-protein
MSNYENEREKLNFPTYIIAAEWALRTGNLLTVDVLMNEFSITQAQANDIIYKIRNEGRCVYEKVVVFKSRPKSRYIGIKIFKVKPLSDMKNQEGIKIKELKDNLKIIRKWMLIRKVGDKFSLIEKYLSNQTDVADLSLDGEPGC
>NZ_CP019944.1|WP_080030237.1|3429133_3432076_+|hypothetical-protein
MTMKKSFKLSRVAYSISIAIPLSFFSLQLMASDDNYNNIIFPEIEAPSNCDEVAILGKCKKYDGTDPLDTLYSSAGDSTRLYKIENSFGFYVDKKQASNGNVIIINSPGSLEGVIRGISTNLLGGVSFNDNRIFINLNGQELKWNLTDNGNGPKTGDGGWISAAAATAGKQLSNNSVYIKNTIFSESGSIFGAYANSASSSYYAPFSQSTITGNTVILDNVTMKPNTSYGPGWGAIVAGAYLFSPTPTFDDSAKSESIDMSNNSVYIKKSNLALDSIAGAFVYTDADSGSFKSNNNLTFIDSSTVNTGDNVYNRLYSASAPNSQDNVLSIQNSTLNISTDKKYYSIRAVYSADKTAENNRLNISNTTINTLNENNVSAKNVDITGGYSYETSRNNKVILDNSVLGRKVTSVNGGISNGYYEKSQIVADNNLVILNKTNMHNDLSVKGGYIHTVTPDKTQSVSASGNSIIVEGSHLAGSIYGGLLGTPDNPGIGKAENNSITIGAGQSGDFNALYGGYGAASDSTYRGNTLNLMSNVSTSSFGGFQHYNFYYSSNEQLSKPMLQINSGEATALVTSRGASENSTVTVLTKGINITDGTRFQLINNNSGFIDADTKDVLTEEDLKKIGQSSAPVFANFKSIATVEQYSHLKDYKLEISDGTLSAIISGNPENPKNPSGEKKNDQTDIFSTASLASLSTAIASDDLLIDTVLTNSLNNKNGSFATVRYGDYKFNTKQKLRTEQTSALFGFAFDTNVIDYGFFIETGYNSYNSNTNSSYGKVYGNGHQSYGGTGLYFDYMTSARGIHATGYLKAGILYDDFGTNIALTNVDLSNSSTYWGAHAGIYWDAPVENDWNTRIYANYFYDGREKEQFKIHDSEITYSEIDSHRLQTGMFINYTGENHLQPYLGIGWEEMMNAGGESSIHDQKHHWSLDTDDMNGGSAVITAGFNYIIPNKNVEAGLNIKGYNGMRNGASAQIQVKWNF
>NZ_CP019944.1|WP_087205686.1|3427225_3428286_-|IS3-family-transposase
MNKKTKRTFTPEFRLECAQLIVDKGYSYRQASEAMNVGSTTLESWVRQLRRERQGIAPSATPITPEQQRIRELEKQVRRLEEQNTIFKKGYRALDVRLTERFSIVSRLSDSHSVVSLCSALGIHRSSYRYWRKRRDTVNSARVRLCSEIRRAWNQSRGSAGARTLAEMLTQNGVPMSRYRAGRLMKYLNLSSCQPGKHQYKNACQEHTCLPNLLERQFAVPEPDRVWCGDITYIWAGNRWCYLVVVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERVFRSLKTEWVPTDGYVGKDEARQQISGYILNYYNSVRPHHYNGGLTPEESENRYRFYYKTVANIT
>NZ_CP019944.1|WP_001176768.1|3424644_3425112_+|tellurium-resistance-protein-TerW
MQLNTRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELRESYSAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEALAQNAELKTGESTGKVVLDKDKKTAVSLSLRMRILRKIDRLAALSGSTRSEAVEKLALHSVDELIKEYSTKKS
>NZ_CP019944.1|WP_069723165.1|3423418_3424627_+|DUF4236-domain-containing-protein
MGFRFRKSINIIPGVRLNLSNGAPSLSVGPRGASVSFGSRGTYANLGLPGTGLSYRTRLDRAARSGGENRTATDPELRQALEQKAAELMSAVTAIRNIHELTPDPKTGISWAELEAVYLHNRTSPFQVPAPVRPEKPDYLVLPEKPAESEGISFLGKWFESESAKAERHAENLRRWQQELIDVERENTLRQHRYQQQRTAWAEQYANWKFEAEEHEKRLATAQADARQQFRTDAAFFESYLAGVLAETEWPRETLVAFEVKPELSTVLLDVDLAEIEDFPDKIYRVNARGTELTEKAMTQKAVRENYARHVHGCLFRLVGIVLHTLPFDNVIVSGFTQRVSKRTGYLEDEYILSCKCTRSQMLSVNFEGIEHIDPVEALGDHPVIRKMSSTFIFQPIEPLTL
>NZ_CP019944.1|WP_000797372.1|3422451_3423408_+|HpcH/HpaI-aldolase/citrate-lyase-family-protein
MKNRLSPWNLGATLYMPATREDIADAVLHGKIPGLRSLVICLEDAVSEADIPVALKNLEHLLHELSNSMSSLGKNDWPLVFIRPRHAEMGRWLKAHYDLSAVDGFVLPKFTLSSLAEWWDIMVGTHLCMMPTLETEDVFDVVQMRELATRLEEHPCHDRIIALRIGGNDLMNVVSLRRPRDLTLYDSPMGYVIKMLVSVFGPRDFALTAPVCEHIDDHAVMARELALDMAHGLVGKTAIHPGQIEVIQNALMVTQGEHSDALRILNSTQAVFKSQGAMCEPATHRRWAAGILDRARFYGLQNEQSADGIRLLTVTQHH
>NZ_CP019944.1|WP_001182420.1|3421372_3422452_+|cysteine-protease-StiP-family-protein
MQPHETFTGSYQPGDVEFLLKPVVIEMTPVEKKEELIQSGKKHYSDMLSQEPAPTQWHLDLFHRALDRGAERLAKEVTQLAIALVERFGDEPIVLASLVRAGVPLGVMLHQALRDMGKTSWHYGISIIRDRGIDGAALDVIEERHGTSGIVFVDGWTGKGAITGELVRALKDRPGYPEQPRLVVLADPCGCSWLAASDDDWLIPFGIMGAPVSGLISRSVWSSEGLHRCMVCEHLSEFECSRMLVDTVAHFRKKLTPSSLAPLSWNTESARVLWQTSRDVIAFLADEFKVDSVNRIKPGIAEATRAVLRRVPDHVFVRSIDDPDVALLVGLAREKGIVVTEMGGTLGQYRAVTIIKKVL
>NZ_CP019944.1|WP_080030239.1|3440781_3443058_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRKTERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP019944.1|WP_000520781.1|3443088_3443409_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP019944.1|WP_000410785.1|3443731_3443956_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP019944.1|WP_000188180.1|3444028_3445975_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP019944.1|WP_000746460.1|3445971_3447087_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP019944.1|WP_001355621.1|3447237_3448194_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP019944.1|WP_000599806.1|3448190_3449849_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP019944.1|WP_000488716.1|3450274_3450970_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP019944.1|WP_000491140.1|3451427_3452327_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP019944.1|WP_080030241.1|3452470_3454123_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLTVDANARVDNPMANLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP019944_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019944_8

4436404-4436538

Orphan

Consensus_repeat	Method
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019944_8

>merge|NZ_CP019944|8|4436404-4436538|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCATTCAGCGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

>NZ_CP019944|8|8|4436404-4436538|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	TTCAGCGCCTGATGCGACGCTGACGCGTCTTATCT
GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019944.1\|WP_000916287.1\|4430286_4430985_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP019944.1\|WP_021576942.1\|4437321_4439673_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP019944.1\|WP_001117011.1\|4439836_4442743_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP019944.1\|WP_001065381.1\|4450627_4451449_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP019944.1\|WP_001200573.1\|4444863_4445679_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP019944.1\|WP_000241272.1\|4449641_4450631_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP019944.1\|WP_072686438.1\|4427733_4428717_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP019944.1\|WP_000800457.1\|4448355_4449642_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP019944.1\|WP_001248768.1\|4424685_4424817_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP019944.1\|WP_080030328.1\|4443831_4444569_-\|UDP-pyrophosphate-phosphatase	unknown	unknown	unknown
NZ_CP019944.1\|WP_021576943.1\|4436551_4437247_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP019944.1\|WP_032280242.1\|4433138_4434839_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP019944.1\|WP_072686437.1\|4426792_4427362_-\|type-III-effector	unknown	unknown	unknown
NZ_CP019944.1\|WP_001148403.1\|4431071_4431836_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP019944.1\|WP_001300811.1\|4431921_4432800_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP019944.1\|WP_001612324.1\|4424905_4426564_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP019944.1\|WP_021556399.1\|4445933_4448303_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP019944.1\|WP_072646858.1\|4428692_4430303_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP019944.1\|WP_000151726.1\|4434849_4436352_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP019944.1\|WP_000525176.1\|4442754_4443414_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659

Protein	Function_ID	Function_description	E-value
NZ_CP019944.1\|WP_000916287.1\|4430286_4430985_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.09593e-164
NZ_CP019944.1\|WP_001612324.1\|4424905_4426564_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP019944.1\|WP_001117011.1\|4439836_4442743_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP019944.1\|WP_001065381.1\|4450627_4451449_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP019944.1\|WP_001200573.1\|4444863_4445679_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP019944.1\|WP_000241272.1\|4449641_4450631_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP019944.1\|WP_072686438.1\|4427733_4428717_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP019944.1\|WP_000800457.1\|4448355_4449642_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP019944.1\|WP_001248768.1\|4424685_4424817_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00111324
NZ_CP019944.1\|WP_021576943.1\|4436551_4437247_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.54195e-178
NZ_CP019944.1\|WP_032280242.1\|4433138_4434839_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP019944.1\|WP_021556399.1\|4445933_4448303_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP019944.1\|WP_001148403.1\|4431071_4431836_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.87417e-49
NZ_CP019944.1\|WP_001300811.1\|4431921_4432800_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP019944.1\|WP_021576942.1\|4437321_4439673_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP019944.1\|WP_072646858.1\|4428692_4430303_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP019944.1\|WP_000151726.1\|4434849_4436352_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP019944.1\|WP_000525176.1\|4442754_4443414_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159

>NZ_CP019944.1|WP_000151726.1|4434849_4436352_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP019944.1|WP_032280242.1|4433138_4434839_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKEQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP019944.1|WP_001300811.1|4431921_4432800_-|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP019944.1|WP_001148403.1|4431071_4431836_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP019944.1|WP_000916287.1|4430286_4430985_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTDELLSGKASASALLGITG
>NZ_CP019944.1|WP_072646858.1|4428692_4430303_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNSTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP019944.1|WP_072686438.1|4427733_4428717_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDHYAAANFNEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP019944.1|WP_072686437.1|4426792_4427362_-|type-III-effector
MKVRNPEQISIPASNTTKDPGLTNSQIIRIVNLVQKTENMNIFEELWETLRNLFRSDKHSQTAARQILKDAFYFQNSDDYSKYFTGAVDGKARDQLTHWLIKFNELKEHARDPENMAAKASLSPKDTLCVSFFIGDEAIFTLKLQLKENTRTGCIDLSNAYFNGVVICGIDCLEVDMSNAETNNSRWYD
>NZ_CP019944.1|WP_001612324.1|4424905_4426564_+|HTH-type-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDPE
>NZ_CP019944.1|WP_001248768.1|4424685_4424817_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEELMQWEGSHSDY
>NZ_CP019944.1|WP_021576943.1|4436551_4437247_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNKHYLRKHGAKAYYGQ
>NZ_CP019944.1|WP_021576942.1|4437321_4439673_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP019944.1|WP_001117011.1|4439836_4442743_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP019944.1|WP_000525176.1|4442754_4443414_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP019944.1|WP_080030328.1|4443831_4444569_-|UDP-pyrophosphate-phosphatase
MKVSVPGMPATLLNMSNNDIYKMVSGDKIDVKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNKKAGNINASKYFTGAVNENEKEKFINSLELFNELKTCAKNPDEMVAKGSMSWVAQTFGDIELSVTFFIENKEICTQTLQLHKGPGNLGVDLGEAYLPGVDMRDCYLGLKTMKGHNKLLYLEPGWNANLDGATLDGATVDGATHLYDEVIIINKITPKKIATEEIATKQSTAEEIIANAIIE
>NZ_CP019944.1|WP_001200573.1|4444863_4445679_-|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP019944.1|WP_021556399.1|4445933_4448303_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSNPQNNKLADSVNRVMPQFKVDGKMVFERDMNLLAPGFTQTLEPRVQYLYVPYRDQSDIYNYDSALLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSSSSIEYRRDEDRLVQLNYRYASPEYIQATLPRDSRDKRWNAPQYKDGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP019944.1|WP_000800457.1|4448355_4449642_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP019944.1|WP_000241272.1|4449641_4450631_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP019944.1|WP_001065381.1|4450627_4451449_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019944_6	6.1\|3255930\|40\|NZ_CP019944\|CRISPRCasFinder	3255930-3255969	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP019944_5	5.1\|2369565\|38\|NZ_CP019944\|CRISPRCasFinder	2369565-2369602	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101196-101230	2	0.943
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165464-165498	3	0.914
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14239-14273	5	0.857
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56080-56114	5	0.857
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	6804-6838	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208981-209015	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219475-219509	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210309-210343	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191264-191298	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30177-30211	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	170-204	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	88-122	6	0.829
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87137-87171	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	138033-138067	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-77	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3372-3406	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208887-208921	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-76	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3371-3405	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219381-219415	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-76	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3371-3405	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210215-210249	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-76	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3371-3405	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191170-191204	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27246-27280	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18350-18384	7	0.8
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15018-15052	7	0.8
NZ_CP019944_3	3.1\|1142578\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1142578-1142609	32	MH617380	Microviridae sp. isolate ctcc639, complete genome	3153-3184	8	0.75
NZ_CP019944_3	3.5\|1142822\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1142822-1142853	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	286581-286612	8	0.75
NZ_CP019944_3	3.5\|1142822\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1142822-1142853	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	236585-236616	8	0.75
NZ_CP019944_3	3.5\|1142822\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1142822-1142853	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	293180-293211	8	0.75
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	61916-61950	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4148	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229148-229182	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229249-229283	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229350-229384	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229451-229485	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	203852-203886	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204038-204072	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204131-204165	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4147	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239642-239676	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239743-239777	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239844-239878	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239945-239979	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214346-214380	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214532-214566	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214625-214659	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4147	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230554-230588	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230655-230689	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230756-230790	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230857-230891	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205180-205214	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205366-205400	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205459-205493	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4147	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211524-211558	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211625-211659	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211726-211760	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211827-211861	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186135-186169	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186321-186355	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186414-186448	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	14272-14306	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6744-6778	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7426	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83590-83624	8	0.771
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84250	8	0.771
NZ_CP019944_2	2.1\|1116620\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1116620-1116651	32	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	111330-111361	9	0.719
NZ_CP019944_7	7.1\|3440447\|32\|NZ_CP019944\|CRISPRCasFinder	3440447-3440478	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP019944_7	7.1\|3440447\|32\|NZ_CP019944\|CRISPRCasFinder	3440447-3440478	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP019944_7	7.1\|3440447\|32\|NZ_CP019944\|CRISPRCasFinder	3440447-3440478	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP019944_7	7.2\|3440507\|33\|NZ_CP019944\|CRISPRCasFinder	3440507-3440539	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
NZ_CP019944_7	7.3\|3440455\|32\|NZ_CP019944\|PILER-CR	3440455-3440486	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP019944_7	7.3\|3440455\|32\|NZ_CP019944\|PILER-CR	3440455-3440486	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP019944_7	7.3\|3440455\|32\|NZ_CP019944\|PILER-CR	3440455-3440486	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP019944_7	7.4\|3440515\|33\|NZ_CP019944\|PILER-CR	3440515-3440547	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386558-386592	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4013-4047	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4012-4046	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4012-4046	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4012-4046	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14022	9	0.743
NZ_CP019944_8	8.1\|4436454\|35\|NZ_CP019944\|CRISPRCasFinder	4436454-4436488	35	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41415-41449	9	0.743
NZ_CP019944_2	2.1\|1116620\|32\|NZ_CP019944\|PILER-CR,CRISPRCasFinder,CRT	1116620-1116651	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	809959-809990	10	0.688

1. spacer 6.1|3255930|40|NZ_CP019944|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcggatcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
*********.******************************

2. spacer 5.1|2369565|38|NZ_CP019944|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.943

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ttcagcgcctgatgcgacgctggcgcgtcttatca	Protospacer
**********************.***********

4. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.914

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgtaacgcctgatgcgacgctgacgcgtcttatct	Protospacer
* .*.******************************

5. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accagcgcctgatgcgccgctgtcgcgtcttatca	Protospacer
 .************** ***** ***********

6. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ctcaacgcctgatgcgacgctggcgcgtcttagcg	Protospacer
.***.*****************.********* *

7. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gtttatgccagatgcgacgctgacgcgtcttatct	Protospacer
 *. ..*** *************************

8. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

9. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

10. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

11. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

12. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*.....****************************

13. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
attgaagcctgatgcgacgctgacgcgtcttatca	Protospacer
 *... ****************************

14. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .*...****************************

15. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatca	Protospacer
. *...**************** ***********

16. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgcgctgcctgatgcgacgctaatgcgtcttatca	Protospacer
* *. .***************.*.**********

17. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

18. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

19. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

20. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

21. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

22. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

23. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

24. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

25. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

26. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

27. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

28. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

29. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accggtgccagatgcgacgcagacgcgtcttatca	Protospacer
 .*.*.*** ********** *************

30. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

31. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. .*.****************.***********

32. spacer 3.1|1142578|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to MH617380 (Microviridae sp. isolate ctcc639, complete genome) position: , mismatch: 8, identity: 0.75

attacgacttccgcacgcacccaccgtttgta	CRISPR spacer
attacgacatccgcacgcccccacgtggtaca	Protospacer
******** ********* *****    *..*

33. spacer 3.5|1142822|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

34. spacer 3.5|1142822|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

35. spacer 3.5|1142822|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtc----cagtgatgctttctggtgctcgaata	CRISPR spacer
----tcacatcagtgatgctttttggtgctcgacgg	Protospacer
    **    ************.**********  .

36. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgccagatgcgacgctggcgcgtcttatct	Protospacer
 . ...*** ************.************

37. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

38. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

39. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

40. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

41. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

42. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

43. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

44. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

45. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

46. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

47. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

48. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

49. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

50. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

51. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

52. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

53. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

54. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

55. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

56. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

57. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

58. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

59. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

60. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

61. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

62. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

63. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

64. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

65. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

66. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

67. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

68. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

69. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgaattacctgatgcgacgctggcgcatcttatca	Protospacer
*  * ..***************.***.*******

70. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

71. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

72. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

73. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

74. spacer 2.1|1116620|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gccctataatgagaaataaactaattcctatt	CRISPR spacer
ctactataatgaaaaagaaactaattagtctc	Protospacer
 . *********.*** *********  * *.

75. spacer 7.1|3440447|32|NZ_CP019944|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

76. spacer 7.1|3440447|32|NZ_CP019944|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

77. spacer 7.1|3440447|32|NZ_CP019944|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

78. spacer 7.2|3440507|33|NZ_CP019944|CRISPRCasFinder matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

79. spacer 7.3|3440455|32|NZ_CP019944|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

80. spacer 7.3|3440455|32|NZ_CP019944|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

81. spacer 7.3|3440455|32|NZ_CP019944|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

82. spacer 7.4|3440515|33|NZ_CP019944|PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

83. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgatgctaacgcgtcttatca	Protospacer
 .....***********.***.************

84. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

85. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

86. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

87. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

88. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
acggatgcccgatgcgacgctggcgcgtcttatcg	Protospacer
 . ...***.************.***********

89. spacer 8.1|4436454|35|NZ_CP019944|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgtctgatgcgacgctggcgcgtcttatca	Protospacer
 .....*.**************.***********

90. spacer 2.1|1116620|32|NZ_CP019944|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.688

gccctataatgagaaataaactaattcctatt	CRISPR spacer
ctaaaaaaatgtaaaataaactaattcctaaa	Protospacer
 .   * **** .*****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1242758 : 1249538

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080029992.1\|1242758_1245092_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.3
WP_000856729.1\|1245106_1245427_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000459291.1\|1245562_1246018_-	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_001244665.1\|1246010_1246298_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_032156565.1\|1246290_1246845_-	ash family protein	Q7M2A7	Enterobacteria_phage	2.6e-40	79.3
WP_001149160.1\|1246841_1247108_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_080029993.1\|1247660_1248395_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	2.0e-128	98.4
WP_000638636.1\|1248391_1248892_+	transactivation protein	NA	NA	NA	NA
WP_080029994.1\|1248965_1249538_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.4e-94	96.2

DBSCAN-SWA_2

1252706 : 1332961

Enterobacteria_phage(67.92%)

tRNA,holin,head,portal,terminase,tail,capsid,plate,integrase

attL 1260912:1260928|attR 1336482:1336498

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000124722.1\|1252706_1253906_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	7.7e-106	50.1
WP_000162574.1\|1254667_1255150_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000600189.1\|1255281_1255758_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117838.1\|1255747_1256038_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|1256099_1256441_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880916.1\|1256589_1258251_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059169.1\|1258336_1259215_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|1259337_1259931_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|1259985_1261272_-	HlyC/CorC family transporter	NA	NA	NA	NA
1260912:1260928	attL	NA	NA	NA	NA
WP_053291549.1\|1261292_1262084_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|1262250_1263612_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|1263748_1263997_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|1264015_1264564_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264777.1\|1264594_1265362_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065253.1\|1265403_1265751_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000589826.1\|1265827_1266310_-	OmpA family protein	NA	NA	NA	NA
WP_080029996.1\|1266325_1267552_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_080029997.1\|1267541_1268060_-	YfiR family protein	NA	NA	NA	NA
WP_024248389.1\|1268209_1268575_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001168032.1\|1268784_1269855_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	6.9e-90	51.2
WP_000225221.1\|1269865_1270987_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000200120.1\|1271029_1272190_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_001386991.1\|1272288_1272336_-	hypothetical protein	NA	NA	NA	NA
WP_000974887.1\|1272504_1273494_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.4e-99	53.5
WP_001242988.1\|1273560_1273863_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.3e-19	52.0
WP_001001394.1\|1273958_1274285_+	hypothetical protein	NA	NA	NA	NA
WP_000813365.1\|1274303_1274645_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	5.1e-55	92.2
WP_000158962.1\|1274655_1274943_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	7.8e-33	76.8
WP_000514277.1\|1274954_1275197_+	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021661.1\|1275193_1275307_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.6e-10	97.3
WP_024232567.1\|1275393_1275597_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.0e-26	88.1
WP_000153674.1\|1275593_1275839_+	winged helix-turn-helix domain-containing protein	A0A0A7NV47	Enterobacteria_phage	3.3e-40	98.8
WP_032419531.1\|1275835_1276135_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	9.6e-42	90.8
WP_122991983.1\|1276146_1276764_+	hypothetical protein	S5MQL6	Escherichia_phage	2.7e-06	38.3
WP_000564226.1\|1276760_1277150_+	hypothetical protein	NA	NA	NA	NA
WP_155120832.1\|1277146_1279972_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	87.2
WP_000686555.1\|1280048_1281008_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	3.2e-179	99.1
WP_000211261.1\|1281012_1281324_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	1.0e-49	97.1
WP_000759753.1\|1281384_1281909_+	hypothetical protein	NA	NA	NA	NA
WP_000095653.1\|1282081_1282675_+	hypothetical protein	NA	NA	NA	NA
WP_000598767.1\|1282684_1283065_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_000087812.1\|1283607_1284654_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_080029998.1\|1284653_1286405_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.9
WP_080029999.1\|1286559_1287396_+\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	1.0e-149	99.6
WP_001055118.1\|1287418_1288471_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	6.8e-199	100.0
WP_080030000.1\|1288516_1289317_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	5.1e-130	91.4
WP_000063093.1\|1289418_1289913_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.6e-89	98.8
WP_000864901.1\|1289912_1290113_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|1290115_1290439_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|1290435_1290828_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780572.1\|1290824_1291232_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	9.0e-67	99.3
WP_080030001.1\|1291369_1291837_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.7e-85	98.7
WP_000356347.1\|1291829_1292465_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.4e-114	99.5
WP_001271932.1\|1292461_1293043_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	8.6e-103	99.0
WP_000213447.1\|1293039_1293390_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_080030002.1\|1293393_1294290_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	2.5e-154	97.7
WP_050009905.1\|1294282_1294891_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	4.0e-87	75.4
WP_080030003.1\|1294887_1296468_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.0e-122	52.9
WP_021549529.1\|1296467_1297070_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.4e-100	92.5
WP_001673557.1\|1297041_1297482_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	9.5e-54	69.7
WP_155120841.1\|1297503_1297893_-	hypothetical protein	F1BUP1	Erwinia_phage	3.2e-13	43.9
WP_080030005.1\|1297921_1298521_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.9e-87	86.9
WP_000979945.1\|1298547_1299036_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_080030006.1\|1299048_1301856_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.0
WP_000763327.1\|1301842_1301971_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.0e-16	97.6
WP_001383548.1\|1302006_1302372_-\|tail	phage tail protein E	A0A0A7NPZ0	Enterobacteria_phage	6.4e-56	96.7
WP_000290450.1\|1302426_1302939_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
WP_000005367.1\|1302938_1304123_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.7e-225	99.2
WP_080030007.1\|1304280_1305390_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-192	93.0
WP_001383550.1\|1305432_1305693_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|1305883_1306024_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_001519189.1\|1306159_1306456_+	zinc-ribbon domain and TM2 domain-containing protein	M4ZS56	Bacillus_phage	9.0e-16	67.2
WP_001353016.1\|1306648_1306846_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000215756.1\|1306790_1307597_+	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.5e-65	53.2
WP_000178456.1\|1307747_1308089_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197686.1\|1308359_1309097_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079112.1\|1309231_1310212_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_021577822.1\|1310208_1310940_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235102.1\|1311069_1313643_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000841103.1\|1319417_1320716_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001300818.1\|1320712_1321036_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949265.1\|1321081_1322437_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082981.1\|1322550_1325211_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_021577820.1\|1325242_1325941_-	DTW domain-containing protein	NA	NA	NA	NA
WP_080030009.1\|1326009_1326429_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	1.6e-13	39.0
WP_000997418.1\|1326635_1327673_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001262723.1\|1327720_1328410_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	2.1e-55	52.1
WP_000627804.1\|1328714_1329098_+	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_001613622.1\|1329153_1329741_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_021577819.1\|1329843_1330725_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219193.1\|1330757_1332092_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_021577818.1\|1332223_1332961_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
1336482:1336498	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1415949 : 1462255

Escherichia_phage(50.98%)

holin,integrase,tail,terminase

attL 1419048:1419064|attR 1460591:1460607

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001299507.1\|1415949_1417416_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
WP_000138282.1\|1417484_1419062_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
1419048:1419064	attL	NA	NA	NA	NA
WP_052934176.1\|1419254_1420511_+\|integrase	site-specific integrase	G9L697	Escherichia_phage	4.9e-236	99.3
WP_001055436.1\|1420513_1421173_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	3.3e-103	79.5
WP_080030017.1\|1421169_1421820_-	adenine methylase	G9L699	Escherichia_phage	2.8e-126	98.6
WP_001335975.1\|1421812_1422064_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.1e-41	100.0
WP_080030018.1\|1422221_1422470_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	6.1e-42	98.8
WP_000063834.1\|1422519_1423461_-	recombinase RecT	A0A2R9YJJ1	Escherichia_phage	4.5e-178	100.0
WP_080030019.1\|1423457_1424279_-	exodeoxyribonuclease VIII	A0A2R9YJH7	Escherichia_phage	6.1e-163	99.6
WP_001102254.1\|1424275_1424575_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.4e-45	98.0
WP_000836290.1\|1424883_1425468_-	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001282459.1\|1425622_1425853_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000168730.1\|1426194_1427025_+	hypothetical protein	G9L6A8	Escherichia_phage	1.9e-156	98.2
WP_000843280.1\|1426996_1427773_+	hypothetical protein	G9L6A9	Escherichia_phage	1.7e-151	99.6
WP_001231258.1\|1427890_1428238_+	hypothetical protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	2.0e-59	96.5
WP_080030020.1\|1428299_1428887_+	hypothetical protein	G9L6B1	Escherichia_phage	5.0e-42	61.3
WP_047630055.1\|1428883_1429402_+	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	2.0e-79	74.2
WP_000797279.1\|1429747_1429936_+	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	1.4e-30	98.4
WP_155120833.1\|1430120_1430453_+	hypothetical protein	V5URG6	Shigella_phage	2.9e-63	99.1
WP_080030021.1\|1430449_1430863_+	hypothetical protein	A0A088CE95	Shigella_phage	1.6e-50	78.2
WP_032214342.1\|1431866_1432205_+	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	5.4e-49	86.5
WP_001124396.1\|1432222_1432435_+	hypothetical protein	Q7Y4V0	Enterobacteria_phage	2.1e-14	52.2
WP_001090120.1\|1432431_1433106_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	9.0e-120	100.0
WP_024215879.1\|1433102_1434578_+	hypothetical protein	A0A0F6TK57	Escherichia_coli_O157_typing_phage	3.8e-296	99.2
WP_059338109.1\|1434668_1435040_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	4.8e-59	92.7
WP_000335899.1\|1435742_1435949_+	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_063075281.1\|1435963_1437643_+\|tail	phage tail protein	G9L6C2	Escherichia_phage	5.2e-302	99.3
WP_000133160.1\|1437639_1437936_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_064559426.1\|1437938_1438634_+	peptidase	G9L6C4	Escherichia_phage	1.8e-94	99.1
WP_042634204.1\|1438648_1439635_+	phage protein	G9L6C5	Escherichia_phage	4.3e-187	99.7
WP_063075279.1\|1439686_1440124_+	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	8.5e-71	95.2
WP_001546708.1\|1440134_1440470_+	hypothetical protein	G9L6C7	Escherichia_phage	1.3e-55	99.1
WP_000424495.1\|1440520_1440844_+	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	2.6e-53	98.1
WP_063075278.1\|1440843_1441449_+	hypothetical protein	G9L6C9	Escherichia_phage	3.1e-111	99.0
WP_064559430.1\|1441448_1443920_+	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	0.0e+00	99.4
WP_000568023.1\|1443919_1444384_+	hypothetical protein	G9L6D1	Escherichia_phage	8.4e-85	100.0
WP_000332878.1\|1444383_1444929_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	9.8e-93	100.0
WP_080030022.1\|1444928_1447442_+	hypothetical protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	0.0e+00	99.9
WP_080030023.1\|1447438_1449241_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	0.0e+00	97.8
WP_080030024.1\|1449246_1451721_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	99.4
WP_080030025.1\|1451916_1452213_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	1.6e-49	99.0
WP_080030026.1\|1452244_1452406_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.1e-19	98.1
WP_080030027.1\|1452498_1453080_-	hypothetical protein	NA	NA	NA	NA
WP_080030028.1\|1453227_1453938_-	BRO-like protein	G9L6E2	Escherichia_phage	1.2e-101	80.3
WP_001188254.1\|1454253_1454511_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	1.7e-42	98.8
WP_080030029.1\|1457415_1458540_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	3.2e-21	29.8
WP_001275998.1\|1458682_1459087_+	membrane protein	T1SA79	Salmonella_phage	9.9e-66	100.0
WP_080030030.1\|1459073_1459382_+\|holin	phage holin family protein	T1SA10	Salmonella_phage	4.4e-50	99.0
WP_080030031.1\|1459371_1460001_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	2.4e-114	96.2
WP_021538753.1\|1459997_1460480_+	DUF2514 domain-containing protein	A0A2R9YJI7	Escherichia_phage	6.5e-72	91.9
WP_000755178.1\|1460697_1461237_-	hypothetical protein	G9L6F0	Escherichia_phage	1.4e-43	98.9
1460591:1460607	attR	NA	NA	NA	NA
WP_000669402.1\|1461252_1461768_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.0e-62	100.0
WP_001344399.1\|1462081_1462255_-	DUF2633 family protein	G9L6F2	Escherichia_phage	6.8e-24	100.0

DBSCAN-SWA_4

1859219 : 1868660

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569315.1\|1859219_1860146_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8
WP_000783123.1\|1860150_1860882_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1860862_1860970_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1861029_1861761_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1861982_1863668_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1863664_1864384_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950409.1\|1864430_1864901_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_001295429.1\|1864940_1865402_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001375261.1\|1865526_1867527_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001333512.1\|1867523_1868660_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7

DBSCAN-SWA_5

1909203 : 1917788

Bacillus_phage(28.57%)

tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000807348.1\|1909203_1910103_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	2.8e-12	29.0
WP_001318299.1\|1910508_1910826_+	hypothetical protein	NA	NA	NA	NA
WP_089615713.1\|1910813_1911287_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	1.2e-46	92.6
WP_029392738.1\|1911898_1913062_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	7.0e-205	99.2
WP_000468308.1\|1913143_1913362_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000476011.1\|1913634_1914996_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
WP_000929408.1\|1915142_1915475_-	YegP family protein	NA	NA	NA	NA
WP_000137877.1\|1915665_1916388_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.6
WP_000675150.1\|1916384_1917788_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	3.0e-32	29.0

DBSCAN-SWA_6

2016692 : 2069227

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000381395.1\|2016692_2018264_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|2018283_2018631_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001682408.1\|2018630_2019308_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000514100.1\|2019530_2020682_-	hypothetical protein	NA	NA	NA	NA
WP_032255490.1\|2022647_2023799_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000747078.1\|2023718_2024069_-\|transposase	transposase	Q716C1	Shigella_phage	1.4e-39	98.9
WP_001405986.1\|2024646_2025669_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.5e-200	99.7
WP_080030095.1\|2025665_2026448_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000349537.1\|2026486_2026639_+	hypothetical protein	NA	NA	NA	NA
WP_000813432.1\|2027376_2027979_-	hypothetical protein	NA	NA	NA	NA
WP_001313064.1\|2028072_2028351_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000221530.1\|2029805_2030375_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000270974.1\|2030634_2031036_+	hypothetical protein	NA	NA	NA	NA
WP_001221623.1\|2031023_2031431_+	hypothetical protein	NA	NA	NA	NA
WP_000656344.1\|2033745_2034780_-	phosphotriesterase	NA	NA	NA	NA
WP_000739825.1\|2034782_2035748_-	DMT family transporter	NA	NA	NA	NA
WP_001066367.1\|2035804_2036563_-	hypothetical protein	NA	NA	NA	NA
WP_089078998.1\|2039680_2040953_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	8.0e-170	95.3
WP_000973176.1\|2042794_2043340_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_001326708.1\|2043336_2044080_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_001166160.1\|2044091_2045171_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_000986321.1\|2045232_2046168_+	L,D-transpeptidase	NA	NA	NA	NA
WP_001011474.1\|2046625_2047543_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_001011018.1\|2047644_2048595_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_122985673.1\|2048712_2050356_+	toxic metabolite efflux MATE transporter YeeO	NA	NA	NA	NA
WP_000532923.1\|2050987_2051704_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001060231.1\|2052045_2053500_-	AMP nucleosidase	NA	NA	NA	NA
WP_000378592.1\|2053601_2054918_-	shikimate transporter	NA	NA	NA	NA
WP_001301431.1\|2065356_2066154_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001079079.1\|2066906_2067437_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.5e-56	99.1
WP_073387511.1\|2068303_2069227_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	3.8e-177	99.7

DBSCAN-SWA_7

2444563 : 2531484

102

Enterobacteria_phage(33.33%)

transposase,head,portal,tail,terminase,protease,integrase,capsid,lysis

attL 2485394:2485409|attR 2500557:2500572

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260849.1\|2444563_2445385_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2445484_2445568_-	hypothetical protein	NA	NA	NA	NA
WP_000743951.1\|2445660_2445996_-	acid shock protein	NA	NA	NA	NA
WP_000091819.1\|2446392_2447646_-	MFS transporter	NA	NA	NA	NA
WP_001019530.1\|2447752_2448646_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|2448780_2450001_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919231.1\|2450125_2450821_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_080030454.1\|2450773_2452066_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148710.1\|2452224_2452839_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000526494.1\|2452881_2453736_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2453737_2454355_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_001342404.1\|2454365_2456789_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.8e-209	48.6
WP_080030135.1\|2456849_2459276_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.7e-214	49.3
WP_021577501.1\|2459474_2459780_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001321287.1\|2459887_2460598_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138584.1\|2460600_2461161_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705197.1\|2461195_2461537_-	DUF1283 family protein	NA	NA	NA	NA
WP_021577500.1\|2461671_2461998_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_001295394.1\|2462203_2463418_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836079.1\|2463429_2464449_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_001360138.1\|2464506_2464617_+	hypothetical protein	NA	NA	NA	NA
WP_000876979.1\|2464636_2465917_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	8.6e-156	62.3
WP_001296941.1\|2465951_2466188_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_033815598.1\|2466275_2468747_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_001083280.1\|2468840_2469032_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854559.1\|2469028_2469217_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000344954.1\|2469703_2470279_-	hypothetical protein	NA	NA	NA	NA
WP_000379589.1\|2470280_2470436_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001003381.1\|2470628_2471036_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000476993.1\|2471113_2471341_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|2471324_2471846_+	hypothetical protein	NA	NA	NA	NA
WP_000054504.1\|2471826_2472792_+	hypothetical protein	U5P0A0	Shigella_phage	2.2e-55	61.2
WP_001151195.1\|2472832_2473252_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-55	93.4
WP_004196353.1\|2473285_2474626_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001301033.1\|2475062_2475395_-	protein FlxA	NA	NA	NA	NA
WP_001326990.1\|2475597_2475903_-	hypothetical protein	NA	NA	NA	NA
WP_000534858.1\|2475927_2476167_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_000323025.1\|2476166_2476454_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000813254.1\|2476525_2476681_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000980994.1\|2476897_2477149_+	hypothetical protein	NA	NA	NA	NA
WP_012304870.1\|2477215_2477494_+	hypothetical protein	NA	NA	NA	NA
WP_001265198.1\|2477495_2478545_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
WP_001047135.1\|2478558_2479311_+	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_120795389.1\|2479588_2479678_-	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000087756.1\|2479732_2479945_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066484.1\|2480245_2480461_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000839590.1\|2481214_2481430_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000189916.1\|2481434_2481746_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_001092971.1\|2481742_2482276_+	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_001071769.1\|2482272_2482770_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_000066495.1\|2483132_2483345_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071524604.1\|2483355_2483544_+	cold-shock protein	NA	NA	NA	NA
WP_120795388.1\|2483546_2483612_+	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_001309517.1\|2483691_2483847_+	hypothetical protein	NA	NA	NA	NA
WP_001019606.1\|2484018_2484192_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000373090.1\|2484343_2484754_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001368374.1\|2484811_2485045_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
2485394:2485409	attL	NA	NA	NA	NA
WP_000453603.1\|2485433_2485979_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	8.1e-95	98.9
WP_001549229.1\|2485953_2487879_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000198149.1\|2487875_2488082_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001324962.1\|2488078_2489680_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	99.1
WP_000123333.1\|2489660_2490980_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-234	98.9
WP_001549228.1\|2490989_2491322_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_096961412.1\|2491383_2491653_+\|capsid	capsid protein	A0A2I6TCE5	Escherichia_phage	1.5e-38	98.8
WP_000896723.1\|2491785_2493021_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JB45	uncultured_Caudovirales_phage	5.5e-99	44.7
WP_000737991.1\|2493022_2493250_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001588496.1\|2494207_2494510_-	hypothetical protein	NA	NA	NA	NA
WP_000929264.1\|2494718_2495084_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000999172.1\|2495076_2495301_+	hypothetical protein	NA	NA	NA	NA
WP_000790824.1\|2495304_2495592_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000817024.1\|2495588_2497409_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.9e-128	50.6
WP_000125506.1\|2497696_2497942_+	hypothetical protein	NA	NA	NA	NA
WP_000126718.1\|2497938_2498388_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000228111.1\|2498605_2499646_+\|capsid	phage capsid protein	C6ZCY2	Enterobacteria_phage	5.7e-65	42.1
WP_000190773.1\|2499655_2499997_+\|head	head decoration protein	NA	NA	NA	NA
WP_001178672.1\|2500008_2500392_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000688840.1\|2500990_2502133_-	TIR domain-containing protein	NA	NA	NA	NA
2500557:2500572	attR	NA	NA	NA	NA
WP_147730198.1\|2502366_2503131_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.4e-137	97.2
WP_000158880.1\|2503172_2503568_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.2e-57	93.9
WP_000752994.1\|2503579_2503933_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000985116.1\|2503944_2504523_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	97.9
WP_000683143.1\|2504519_2504915_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_001439072.1\|2504922_2505663_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	4.0e-129	97.2
WP_000479139.1\|2505678_2506101_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.4e-70	96.4
WP_000459480.1\|2506082_2506517_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
WP_000840345.1\|2506509_2509089_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	98.3
WP_000847345.1\|2509085_2509415_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_001152580.1\|2509414_2510113_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.4e-131	98.3
WP_000140764.1\|2510118_2510862_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	98.0
WP_000090905.1\|2510798_2511401_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	5.6e-89	85.6
WP_080030136.1\|2511461_2514941_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.6
WP_080030137.1\|2515008_2515608_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.0e-107	95.5
WP_001138014.1\|2518901_2521868_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|2521871_2522432_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001323889.1\|2522741_2524319_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
WP_044715785.1\|2524542_2524716_+\|tail	tail protein	NA	NA	NA	NA
WP_000885611.1\|2524715_2525291_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000086527.1\|2525388_2525979_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|2526295_2526529_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_089078998.1\|2526713_2527986_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	8.0e-170	95.3
WP_080030138.1\|2528651_2529935_+	MHS family MFS transporter	NA	NA	NA	NA
WP_021577480.1\|2530023_2531484_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	7.3e-42	29.3

DBSCAN-SWA_8

2675925 : 2787686

104

Escherichia_phage(40.74%)

tRNA,transposase,tail,terminase,integrase,lysis

attL 2708391:2708408|attR 2783302:2783319

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024227167.1\|2675925_2677134_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	5.0e-206	92.8
WP_001261020.1\|2677665_2678334_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586712.1\|2678637_2679231_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001296725.1\|2679227_2680220_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_021577426.1\|2680343_2681324_+	LbetaH domain-containing protein	NA	NA	NA	NA
WP_001491065.1\|2681315_2681855_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|2681917_2682142_-	YdcH family protein	NA	NA	NA	NA
WP_000375956.1\|2682281_2683937_-	glucan biosynthesis protein	NA	NA	NA	NA
WP_080030159.1\|2684161_2685505_-	VOC family protein	NA	NA	NA	NA
WP_000414564.1\|2685721_2686645_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080030160.1\|2686682_2688323_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_080030161.1\|2688711_2688861_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|2688932_2689106_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_000428998.1\|2689350_2689881_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000048684.1\|2690069_2691071_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_080030162.1\|2691112_2692552_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001027962.1\|2692748_2693549_-	YdcF family protein	NA	NA	NA	NA
WP_000344421.1\|2693664_2694042_-	hypothetical protein	NA	NA	NA	NA
WP_001102902.1\|2694166_2694598_-	hypothetical protein	NA	NA	NA	NA
WP_080030163.1\|2694584_2694923_-	hypothetical protein	NA	NA	NA	NA
WP_000086432.1\|2694927_2695353_-	hypothetical protein	NA	NA	NA	NA
WP_080030164.1\|2695498_2699401_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_000048948.1\|2699601_2700207_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_123057607.1\|2700260_2701577_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_080030165.1\|2701566_2703324_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_080030166.1\|2703339_2704236_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000177502.1\|2704235_2704841_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_033814795.1\|2705010_2707317_-	DUF2773 domain-containing bactofilin	NA	NA	NA	NA
WP_000097811.1\|2707380_2708241_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
2708391:2708408	attL	NA	NA	NA	NA
WP_123057608.1\|2708460_2710920_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000831637.1\|2714824_2715148_-	YdbL family protein	NA	NA	NA	NA
WP_000706310.1\|2715155_2715341_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_033814794.1\|2715337_2717977_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|2718184_2719174_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001298828.1\|2719284_2719707_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|2719703_2719970_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_080030167.1\|2720243_2723768_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_033814793.1\|2724133_2725267_+	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
WP_001295593.1\|2725407_2725842_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_001348156.1\|2726135_2726279_-	hypothetical protein	NA	NA	NA	NA
WP_120795384.1\|2726618_2726732_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836772.1\|2726800_2727034_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	4.1e-32	87.0
WP_000086519.1\|2727350_2727941_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.8e-24	38.8
WP_000885599.1\|2728038_2728614_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.1e-105	96.9
WP_080030168.1\|2728613_2732144_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	2.5e-11	37.3
WP_080030169.1\|2732208_2732808_-	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	7.7e-107	95.0
WP_000526135.1\|2732942_2733401_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3
WP_080030170.1\|2733586_2737066_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.7
WP_000090943.1\|2737126_2737729_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.0e-87	84.7
WP_001349612.1\|2737665_2738409_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.9e-145	96.3
WP_001152432.1\|2738414_2739113_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-125	93.5
WP_000024051.1\|2739112_2739451_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_000840620.1\|2739443_2742677_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.3e-112	34.7
WP_012565075.1\|2743150_2743510_-	hypothetical protein	NA	NA	NA	NA
WP_000094292.1\|2743660_2744623_-	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
WP_000144678.1\|2744649_2745042_-	hypothetical protein	NA	NA	NA	NA
WP_001029815.1\|2745038_2745419_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
WP_000524260.1\|2745419_2745803_-	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_000634214.1\|2745802_2746198_-	hypothetical protein	NA	NA	NA	NA
WP_000918490.1\|2746420_2747560_-	hypothetical protein	G8C7P7	Escherichia_phage	1.7e-158	74.7
WP_000763708.1\|2749623_2751030_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	6.7e-186	68.8
WP_000625347.1\|2751032_2752334_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.0e-149	59.8
WP_000089446.1\|2752314_2753409_-	hypothetical protein	A0A0U2RXW9	Escherichia_phage	4.5e-113	80.2
WP_000126788.1\|2753412_2753622_-	hypothetical protein	NA	NA	NA	NA
WP_001204033.1\|2753599_2754532_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.2e-83	54.5
WP_001291092.1\|2754524_2755319_-	transcriptional regulator	R4TG31	Halovirus	7.5e-49	40.7
WP_001097895.1\|2755456_2756914_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001228688.1\|2757110_2757296_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
WP_001135310.1\|2757512_2758010_-	lysozyme	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
WP_000839565.1\|2758009_2758225_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_085947917.1\|2758276_2759550_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_001348108.1\|2759812_2760187_-	hypothetical protein	NA	NA	NA	NA
WP_000506936.1\|2760358_2760787_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000640162.1\|2761830_2762373_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.9e-76	75.7
WP_000247763.1\|2762369_2762660_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
WP_000940319.1\|2762659_2763259_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
WP_000149055.1\|2764072_2764411_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_001117227.1\|2765134_2766334_+	MFS transporter	NA	NA	NA	NA
WP_000957774.1\|2766345_2767038_+	calcium transporter ChaC	NA	NA	NA	NA
WP_000019009.1\|2767034_2767916_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000625667.1\|2768046_2769324_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001676522.1\|2769387_2771385_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.3e-21	26.2
WP_001151151.1\|2771725_2772148_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	88.5
WP_001262393.1\|2772188_2773259_-	hypothetical protein	A0A088CD36	Shigella_phage	4.2e-63	65.2
WP_000693853.1\|2773330_2773756_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001072337.1\|2773752_2774007_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
WP_000233320.1\|2774086_2774506_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_000233809.1\|2774792_2774927_+	phage protein	NA	NA	NA	NA
WP_001169151.1\|2774937_2775093_+	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001312793.1\|2775089_2775578_-	superinfection exclusion protein B	NA	NA	NA	NA
WP_000560225.1\|2776019_2776241_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
WP_001352098.1\|2776240_2776411_+	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000632297.1\|2776485_2776761_+	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_001532611.1\|2776862_2779463_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.9e-248	63.5
WP_000166319.1\|2779455_2780265_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_001317028.1\|2780321_2780516_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000276809.1\|2780508_2780718_+	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_000079604.1\|2780796_2781012_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040852.1\|2781013_2782249_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
WP_080030171.1\|2782300_2783236_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.0e-145	98.4
WP_000123746.1\|2783364_2784738_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
2783302:2783319	attR	NA	NA	NA	NA
WP_001296046.1\|2784767_2784941_-	hypothetical protein	NA	NA	NA	NA
WP_000387388.1\|2785215_2786199_-	zinc transporter ZntB	NA	NA	NA	NA
WP_080030172.1\|2786453_2787686_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	1.4e-17	40.1

DBSCAN-SWA_9

2994826 : 3068704

Salmonella_phage(67.31%)

tRNA,transposase,head,portal,tail,terminase,plate,integrase,capsid,lysis

attL 3003108:3003122|attR 3070809:3070823

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526135.1\|2994826_2995285_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3
WP_085947917.1\|2995705_2996979_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_000872356.1\|2997250_2997574_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	4.0e-41	65.4
WP_000444487.1\|2997676_2998927_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248691.1\|2999098_2999752_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_080030192.1\|2999761_3000223_+	phosphatase NudJ	NA	NA	NA	NA
WP_001297484.1\|3000276_3001383_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001297479.1\|3001418_3002060_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000423729.1\|3002063_3003434_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
3003108:3003122	attL	NA	NA	NA	NA
WP_001265481.1\|3003601_3004273_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735413.1\|3004272_3005733_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001295435.1\|3005808_3006930_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000359447.1\|3007075_3008305_-	peptidase T	NA	NA	NA	NA
WP_000531594.1\|3008554_3009691_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000799401.1\|3009674_3010532_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000580316.1\|3010528_3011323_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_000759309.1\|3011319_3012366_+	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_021577343.1\|3012521_3013343_-	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	7.3e-23	35.6
WP_080030193.1\|3013358_3014270_-	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_001251363.1\|3014298_3015543_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_001033695.1\|3015542_3016244_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.9e-35	40.3
WP_000284714.1\|3016236_3017436_-	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_080030194.1\|3017697_3018771_+	acyltransferase family protein	NA	NA	NA	NA
WP_024184315.1\|3018898_3022345_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_000598208.1\|3022489_3023449_+	L,D-transpeptidase LdtC	NA	NA	NA	NA
WP_000800153.1\|3023531_3023789_-	multiple stress resistance protein BhsA	A0A1B2IFR9	Erwinia_phage	9.6e-06	37.1
WP_000179805.1\|3024029_3024662_+	TetR family copper-responsive transcriptional repressor ComR	NA	NA	NA	NA
WP_001043459.1\|3024723_3025263_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_000211045.1\|3025489_3026794_-	NADH dehydrogenase	NA	NA	NA	NA
WP_000587933.1\|3027193_3027736_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000529331.1\|3027758_3028784_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_001116551.1\|3028794_3029619_-	thiamine kinase	NA	NA	NA	NA
WP_000164439.1\|3029599_3030241_-	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_001225279.1\|3030254_3030632_-	YcfL family protein	NA	NA	NA	NA
WP_000807125.1\|3030634_3030994_-	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_074152979.1\|3032709_3032928_-	transcriptional regulator	E5G6Q4	Salmonella_phage	1.7e-19	67.6
WP_080030195.1\|3033018_3034119_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.7
WP_000980413.1\|3034115_3034601_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_080030196.1\|3034597_3037675_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.3
WP_000763311.1\|3037667_3037787_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281016.1\|3037801_3038104_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.2e-41	90.0
WP_001207660.1\|3038158_3038674_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_021514976.1\|3038683_3039856_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.2e-204	90.8
WP_021514975.1\|3040007_3040565_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
WP_080030197.1\|3040595_3041219_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.2e-49	54.3
WP_080030198.1\|3041218_3041824_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	1.5e-89	87.8
WP_001440573.1\|3041792_3041990_-	hypothetical protein	NA	NA	NA	NA
WP_080030199.1\|3041976_3043368_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.7e-153	74.1
WP_080030200.1\|3043364_3043970_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-107	90.0
WP_080030201.1\|3043962_3044871_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_000177580.1\|3044857_3045217_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.2e-52	87.4
WP_021514971.1\|3045213_3045792_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_001579974.1\|3045887_3046754_+	hypothetical protein	NA	NA	NA	NA
WP_000829125.1\|3046780_3047227_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-61	82.4
WP_021514968.1\|3047219_3047651_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.2e-71	93.0
WP_021514967.1\|3047746_3048175_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.4e-46	75.9
WP_021514966.1\|3048171_3048549_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-16	40.0
WP_094658707.1\|3048550_3049024_-	lysozyme	E5G6N1	Salmonella_phage	8.3e-80	90.4
WP_000171568.1\|3049043_3049259_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|3049262_3049466_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_021514964.1\|3049465_3049930_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_016245844.1\|3050025_3050676_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.5e-111	96.3
WP_000742511.1\|3050679_3051738_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_080030202.1\|3051754_3052588_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.4e-122	88.1
WP_021514962.1\|3052730_3054497_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_021514961.1\|3054496_3055525_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.2e-170	87.0
WP_080030203.1\|3055570_3057256_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_085947917.1\|3057230_3058504_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_000354145.1\|3059063_3060641_-	hypothetical protein	NA	NA	NA	NA
WP_080030204.1\|3060928_3061162_-	DinI family protein	E5G6M1	Salmonella_phage	1.0e-35	98.7
WP_001154434.1\|3061172_3061361_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_080030205.1\|3061514_3063929_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.9
WP_000104156.1\|3063925_3064783_-	DNA adenine methylase	E5G6L8	Salmonella_phage	7.1e-162	97.9
WP_000752613.1\|3064779_3065007_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_001244228.1\|3065006_3065240_-	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_050010414.1\|3065307_3065649_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.0e-56	99.1
WP_000956182.1\|3065612_3065813_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_000460891.1\|3065820_3066330_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_001247707.1\|3066362_3066584_-	hypothetical protein	NA	NA	NA	NA
WP_001047324.1\|3066709_3067279_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	4.2e-38	42.9
WP_001321204.1\|3067294_3067486_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	4.0e-09	68.2
WP_024174454.1\|3067672_3068704_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	5.6e-105	56.7
3070809:3070823	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3151586 : 3194327

Rhizobium_phage(25.0%)

plate,integrase,bacteriocin

attL 3171018:3171031|attR 3201334:3201347

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001080618.1\|3151586_3152024_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000213829.1\|3152508_3152772_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_080030212.1\|3153327_3155937_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_000259060.1\|3155941_3156466_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000439137.1\|3156499_3157588_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000342470.1\|3157551_3159321_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000097914.1\|3159354_3160968_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_001151319.1\|3161248_3164620_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_001144698.1\|3164612_3165821_-	hypothetical protein	NA	NA	NA	NA
WP_000939274.1\|3165823_3166087_-	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	2.3e-07	54.0
WP_001469826.1\|3166605_3167400_-	hypothetical protein	NA	NA	NA	NA
WP_000125544.1\|3167396_3169958_-	hypothetical protein	J7KKH9	Erwinia_phage	5.4e-08	37.8
WP_001256125.1\|3169973_3172331_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
3171018:3171031	attL	NA	NA	NA	NA
WP_080030214.1\|3172315_3174994_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.3e-94	32.8
WP_001007317.1\|3175161_3175653_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_080030215.1\|3175658_3177320_-	OmpA family protein	NA	NA	NA	NA
WP_001248377.1\|3177319_3178009_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000708643.1\|3178005_3179355_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_080030216.1\|3179370_3180915_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_001469824.1\|3180936_3181434_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_032288129.1\|3181940_3182132_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001469817.1\|3184098_3184872_+	hypothetical protein	NA	NA	NA	NA
WP_080030217.1\|3186252_3186816_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000335703.1\|3187636_3189070_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_032193586.1\|3189288_3189486_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_001303889.1\|3189712_3190009_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000282211.1\|3191120_3192938_+	hypothetical protein	NA	NA	NA	NA
WP_000279872.1\|3193124_3194327_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.9e-44	34.4
3201334:3201347	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3364198 : 3443058

Escherichia_phage(11.11%)

integrase,protease,tRNA,transposase

attL 3434971:3434986|attR 3440620:3440635

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339197.1\|3364198_3365407_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000799175.1\|3365595_3366360_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_033815685.1\|3366528_3367812_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057149.1\|3367882_3368971_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
WP_080030232.1\|3369169_3369862_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_001612733.1\|3369991_3371752_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642546.1\|3372157_3373015_+	formate transporter FocA	NA	NA	NA	NA
WP_080030233.1\|3373069_3375352_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.2e-162	41.2
WP_000111043.1\|3375543_3376284_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_001339197.1\|3377096_3378305_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000109295.1\|3379471_3380620_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|3380934_3381561_+	hydrolase	NA	NA	NA	NA
WP_000534647.1\|3381596_3382460_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213098.1\|3382461_3383079_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_021577202.1\|3383089_3385534_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000886683.1\|3385772_3387065_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067755.1\|3387155_3388499_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|3388509_3389121_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_080030235.1\|3389275_3393265_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3393399_3393894_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537423.1\|3394438_3395404_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_001043591.1\|3395526_3397293_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.8e-23	24.3
WP_001202193.1\|3397293_3399015_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.2e-21	25.2
WP_001241678.1\|3399056_3399761_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3400045_3400264_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_080030236.1\|3400754_3401597_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001374283.1\|3401681_3401879_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_058101247.1\|3401890_3402379_-	hypothetical protein	NA	NA	NA	NA
WP_069723388.1\|3402375_3402753_-	toxin	NA	NA	NA	NA
WP_032178229.1\|3402842_3403211_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086748.1\|3403260_3403905_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.0e-27	33.3
WP_069723389.1\|3403923_3404145_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.6e-09	44.4
WP_069723390.1\|3404231_3404630_-	RadC family protein	NA	NA	NA	NA
WP_069723391.1\|3404645_3405131_-	antirestriction protein	A9J566	Pseudomonas_phage	2.6e-12	31.7
WP_024220054.1\|3405222_3406041_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.7e-46	38.6
WP_053904493.1\|3406367_3409217_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_069723392.1\|3409588_3410461_-	GTPase family protein	NA	NA	NA	NA
WP_000282126.1\|3410792_3410975_+	hypothetical protein	NA	NA	NA	NA
WP_000422690.1\|3411274_3411694_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.2e-47	95.9
WP_001053347.1\|3411851_3413093_-	tellurium resistance protein TerF	NA	NA	NA	NA
WP_000301248.1\|3413521_3414097_-	TerD family protein	K4JRX3	Caulobacter_phage	2.5e-30	41.1
WP_000116680.1\|3414165_3414744_-	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_029397834.1\|3414792_3415833_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	3.8e-77	48.0
WP_000007450.1\|3415855_3416311_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_029397833.1\|3416333_3417491_-	tellurium resistance protein TerA	NA	NA	NA	NA
WP_069723164.1\|3417490_3418072_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	8.2e-13	30.5
WP_001360177.1\|3418394_3419453_+	hypothetical protein	NA	NA	NA	NA
WP_001280116.1\|3419462_3420605_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	7.7e-31	35.4
WP_001040060.1\|3420597_3421371_+	hypothetical protein	NA	NA	NA	NA
WP_001182420.1\|3421372_3422452_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.6e-38	34.4
WP_000797372.1\|3422451_3423408_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_069723165.1\|3423418_3424627_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_001176768.1\|3424644_3425112_+	tellurium resistance protein TerW	NA	NA	NA	NA
WP_087205686.1\|3427225_3428286_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.3e-84	52.7
WP_080030237.1\|3429133_3432076_+	hypothetical protein	NA	NA	NA	NA
WP_000073819.1\|3433790_3434225_-	hypothetical protein	NA	NA	NA	NA
3434971:3434986	attL	NA	NA	NA	NA
WP_001303889.1\|3435584_3435881_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000282211.1\|3436992_3438810_+	hypothetical protein	NA	NA	NA	NA
WP_000279872.1\|3438996_3440199_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.9e-44	34.4
WP_080030239.1\|3440781_3443058_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.3e-166	42.5
3440620:3440635	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4128839 : 4175447

Stx2-converting_phage(25.0%)

integrase,transposase

attL 4128046:4128061|attR 4131422:4131437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4128046:4128061	attL	NA	NA	NA	NA
WP_000144688.1\|4128839_4130159_+\|integrase	site-specific integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	1.5e-17	23.4
WP_001280470.1\|4130251_4131100_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_089075429.1\|4131184_4131382_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000854821.1\|4131603_4131981_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
4131422:4131437	attR	NA	NA	NA	NA
WP_024214935.1\|4132070_4132439_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000692350.1\|4132518_4132740_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186745.1\|4132826_4133303_-	RadC family protein	NA	NA	NA	NA
WP_024214936.1\|4133318_4133804_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	9.0e-13	34.4
WP_001234397.1\|4133895_4134714_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	5.2e-45	38.0
WP_001117566.1\|4134803_4135037_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_080030313.1\|4135107_4137954_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_089620060.1\|4138325_4139198_-	GTPase family protein	NA	NA	NA	NA
WP_000282126.1\|4139528_4139711_+	hypothetical protein	NA	NA	NA	NA
WP_000019440.1\|4143333_4144314_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_001060305.1\|4145163_4147209_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_001065545.1\|4147201_4148380_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_153445063.1\|4149111_4149264_+	hypothetical protein	NA	NA	NA	NA
WP_000656352.1\|4151320_4152355_-	phosphotriesterase	NA	NA	NA	NA
WP_080030316.1\|4152357_4153239_-	DMT family transporter	NA	NA	NA	NA
WP_001339197.1\|4153213_4154422_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_001066367.1\|4154717_4155476_-	hypothetical protein	NA	NA	NA	NA
WP_000667429.1\|4155489_4156704_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_085947917.1\|4157506_4158779_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_000086499.1\|4159581_4160982_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_000262197.1\|4161204_4162503_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_000677248.1\|4162561_4163281_-	amino acid racemase	NA	NA	NA	NA
WP_000789106.1\|4163620_4164520_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA
WP_001313421.1\|4165646_4166243_-	MFS transporter	NA	NA	NA	NA
WP_000705006.1\|4166317_4167466_-	galactonate dehydratase	Q6A202	Oenococcus_phage	1.0e-51	32.8
WP_001198735.1\|4167462_4168080_-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA
WP_000127080.1\|4168063_4168942_-	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA
WP_000174305.1\|4168938_4169628_-	D-galactonate utilization transcriptional regulator DgoR	NA	NA	NA	NA
WP_085967273.1\|4170823_4172036_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.6e-101	57.8
WP_000706914.1\|4172256_4172391_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001682408.1\|4172831_4173509_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|4173508_4173856_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|4173875_4175447_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7

DBSCAN-SWA_13

4197042 : 4250660

Stx2-converting_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085949199.1\|4197042_4198316_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.6e-172	96.0
WP_000282090.1\|4199076_4199640_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000335705.1\|4200609_4202043_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000120395.1\|4202291_4202519_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000266639.1\|4202624_4202852_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001186448.1\|4203558_4205175_+	hypothetical protein	NA	NA	NA	NA
WP_024233400.1\|4205261_4205858_-	hypothetical protein	A0A1B0VBK8	Salmonella_phage	2.9e-98	87.9
WP_000893255.1\|4206358_4207612_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
WP_001285288.1\|4207623_4208727_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749881.1\|4209014_4210070_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9
WP_000174677.1\|4210108_4210510_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189541.1\|4210567_4211812_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|4211903_4212362_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001293010.1\|4212622_4214080_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_077249905.1\|4214136_4214673_-	peptide chain release factor H	NA	NA	NA	NA
WP_001303804.1\|4214605_4214872_-	hypothetical protein	NA	NA	NA	NA
WP_021576988.1\|4215105_4215558_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001226161.1\|4215554_4216610_-	DNA polymerase IV	NA	NA	NA	NA
WP_001408335.1\|4216680_4217451_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001351620.1\|4217410_4219150_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_155120835.1\|4219382_4219811_-\|transposase	transposase	NA	NA	NA	NA
WP_085947917.1\|4219795_4221069_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_000056850.1\|4221391_4222141_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.2e-19	37.7
WP_000729704.1\|4222350_4222611_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_000615980.1\|4222613_4222892_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_001225679.1\|4223047_4223788_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333380.1\|4223758_4224526_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|4224731_4225310_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_021576986.1\|4225549_4227994_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000532698.1\|4228036_4228510_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_021576985.1\|4228663_4229434_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_001682408.1\|4230131_4230809_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|4230808_4231156_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|4231175_4232747_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_133302424.1\|4232870_4233794_-	sel1 repeat family protein	NA	NA	NA	NA
WP_001695454.1\|4238328_4240470_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.4e-25	25.0
WP_001142958.1\|4240679_4241198_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037397.1\|4241894_4242395_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|4242429_4242654_+	hypothetical protein	NA	NA	NA	NA
WP_000056978.1\|4242704_4244180_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000611743.1\|4244186_4244600_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393831.1\|4244603_4246454_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001695452.1\|4246417_4247500_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113711.1\|4247524_4248805_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080156.1\|4248801_4249326_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_021576983.1\|4249328_4250660_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_14

4639001 : 4732292

103

Enterobacteria_phage(75.86%)

tRNA,holin,transposase,head,portal,tail,terminase,plate,protease,integrase,capsid

attL 4658402:4658418|attR 4678269:4678285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000416415.1\|4639001_4641857_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-140	36.7
WP_032301158.1\|4641912_4643109_-	DUF898 domain-containing protein	NA	NA	NA	NA
WP_080030358.1\|4643301_4643805_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000002953.1\|4643850_4644267_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_000012907.1\|4644428_4645433_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_080030359.1\|4645490_4647281_-	hypothetical protein	NA	NA	NA	NA
WP_001308227.1\|4647403_4647856_-	DUF386 domain-containing protein	NA	NA	NA	NA
WP_000256663.1\|4648000_4648594_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000500685.1\|4648664_4649378_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000230274.1\|4649508_4649904_+	RidA family protein	NA	NA	NA	NA
WP_001296693.1\|4650184_4650319_+	pyr operon leader peptide	NA	NA	NA	NA
WP_080030360.1\|4650322_4651258_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.2e-52	40.2
WP_000148581.1\|4651270_4651732_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000047539.1\|4651804_4652191_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000471889.1\|4652396_4655093_-	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_001387276.1\|4655233_4655287_-	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_001181324.1\|4655471_4656419_+	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_072662109.1\|4656537_4657959_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_072686182.1\|4658008_4659664_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
4658402:4658418	attL	NA	NA	NA	NA
WP_155120836.1\|4659895_4660069_-	hypothetical protein	NA	NA	NA	NA
WP_000187778.1\|4660057_4662196_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.5e-266	64.5
WP_001106233.1\|4662353_4662818_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	K4F9T1	Cronobacter_phage	3.8e-53	57.7
WP_001232245.1\|4662862_4663249_-	cytochrome b562	NA	NA	NA	NA
WP_001162171.1\|4663432_4664785_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_000166270.1\|4664878_4665430_+	ribosome-associated protein	NA	NA	NA	NA
WP_001219792.1\|4665585_4666959_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000853753.1\|4667134_4668133_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_000596014.1\|4668165_4669161_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_001362056.1\|4669147_4670170_-	ABC transporter permease	NA	NA	NA	NA
WP_000205813.1\|4670183_4671686_-	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	30.3
WP_000265942.1\|4671825_4672782_-	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000055072.1\|4673091_4673622_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.4e-56	63.9
WP_000239579.1\|4673701_4674052_-	endoribonuclease toxin ChpB	NA	NA	NA	NA
WP_001223208.1\|4674045_4674297_-	type II toxin-antitoxin system ChpS family antitoxin	NA	NA	NA	NA
WP_001372721.1\|4674587_4675583_-\|integrase	tyrosine-type recombinase/integrase	A0A0A7NQ69	Enterobacteria_phage	2.4e-193	100.0
WP_021580386.1\|4675649_4675949_-	helix-turn-helix transcriptional regulator	A0A0A7NPW3	Enterobacteria_phage	1.2e-44	100.0
WP_001158283.1\|4676057_4676483_+	regulatory protein	A0A0A7NPS5	Enterobacteria_phage	9.1e-78	100.0
WP_000664580.1\|4676520_4676871_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	5.4e-60	100.0
WP_000159895.1\|4676881_4677160_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.2e-43	100.0
WP_000514277.1\|4677171_4677414_+	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021656.1\|4677410_4677524_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	2.5e-11	100.0
WP_001560998.1\|4677610_4677814_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	4.0e-31	100.0
WP_000153676.1\|4677810_4678056_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	6.7e-41	100.0
WP_046788693.1\|4678052_4678367_+	ead/Ea22-like family protein	A0A0A7NRX6	Enterobacteria_phage	5.4e-51	100.0
4678269:4678285	attR	NA	NA	NA	NA
WP_001036809.1\|4678363_4678567_+	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	4.8e-29	100.0
WP_001603062.1\|4678563_4679394_+\|protease	serine protease	A0A0A7NPW9	Enterobacteria_phage	8.7e-133	100.0
WP_000013449.1\|4679761_4679992_+	hypothetical protein	A0A0A7NV48	Enterobacteria_phage	2.8e-33	100.0
WP_000599398.1\|4680064_4680430_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	4.6e-62	99.2
WP_155120837.1\|4680436_4683259_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.6
WP_000686508.1\|4683335_4684295_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	3.8e-180	99.4
WP_080030361.1\|4684299_4684611_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	1.4e-48	96.1
WP_001603071.1\|4684792_4685938_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_001603073.1\|4685927_4686446_+	PIN domain-containing protein	NA	NA	NA	NA
WP_000087812.1\|4686979_4688026_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_000613796.1\|4688025_4689777_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.6
WP_080030362.1\|4689931_4690768_+\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	7.9e-150	99.6
WP_080030363.1\|4690791_4691844_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.0e-186	93.7
WP_032198072.1\|4691889_4692690_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.4e-124	88.0
WP_000063103.1\|4692791_4693286_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
WP_000864901.1\|4693285_4693486_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|4693488_4693812_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|4693808_4694201_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_052909143.1\|4694197_4694605_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	2.0e-66	98.5
WP_044860451.1\|4694742_4695210_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.5e-84	98.1
WP_000356344.1\|4695202_4695838_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.4e-114	99.5
WP_050901164.1\|4695834_4696416_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	4.7e-101	96.9
WP_000213447.1\|4696412_4696763_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001111949.1\|4696766_4697663_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	8.7e-155	97.7
WP_000071724.1\|4697655_4698264_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.5e-86	74.9
WP_078398835.1\|4698260_4699751_+\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	1.5e-106	67.2
WP_080030364.1\|4699753_4700194_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.1e-49	65.5
WP_023351548.1\|4700165_4700768_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.1e-79	72.0
WP_080030470.1\|4700767_4701229_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	6.1e-35	50.6
WP_022631004.1\|4701301_4701901_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.4e-86	86.3
WP_000979945.1\|4701927_4702416_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_063809642.1\|4702428_4705236_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	94.9
WP_000333503.1\|4705222_4705378_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_050901167.1\|4705386_4705761_-\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	2.0e-36	71.7
WP_000290466.1\|4705817_4706330_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.3e-90	96.5
WP_063809643.1\|4706329_4707514_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.2e-223	98.7
WP_063809644.1\|4707671_4708772_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.1e-204	98.9
WP_000488105.1\|4708814_4709075_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078920.1\|4709266_4709407_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
WP_000288983.1\|4709763_4710006_-	hypothetical protein	A0A0A7NPW2	Enterobacteria_phage	2.5e-40	100.0
WP_001219160.1\|4710181_4710523_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_080030365.1\|4710525_4714305_-	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001269327.1\|4714301_4716035_-	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_001295196.1\|4716240_4716879_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_001601345.1\|4717201_4718545_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_000689228.1\|4718623_4718830_-	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000175284.1\|4719154_4719709_+	YtfJ family protein	NA	NA	NA	NA
WP_080030366.1\|4719798_4720710_-	hypothetical protein	NA	NA	NA	NA
WP_000886909.1\|4720921_4721662_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000589440.1\|4721851_4723795_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000084622.1\|4723912_4724293_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021578251.1\|4724381_4725242_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_021578250.1\|4725349_4726315_+	DMT family transporter	NA	NA	NA	NA
WP_000331456.1\|4726422_4727085_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_000228346.1\|4727129_4728542_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000211225.1\|4728850_4729471_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_001119478.1\|4729688_4730327_+	cell division protein YtfB	NA	NA	NA	NA
WP_000826426.1\|4730461_4731670_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	6.4e-209	93.5
WP_080030367.1\|4731677_4732292_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.1e-42	59.9

DBSCAN-SWA_15

4797222 : 4861800

Stx2-converting_phage(20.0%)

integrase,transposase

attL 4797028:4797046|attR 4833983:4834001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4797028:4797046	attL	NA	NA	NA	NA
WP_072647611.1\|4797222_4798407_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.6e-122	53.4
WP_000053331.1\|4798556_4799567_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000253907.1\|4799662_4801789_+	alpha-galactosidase	NA	NA	NA	NA
WP_001083368.1\|4801851_4803129_+	MFS transporter	NA	NA	NA	NA
WP_000813678.1\|4803128_4804559_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_001037798.1\|4804753_4806148_+	glycoporin	NA	NA	NA	NA
WP_023154806.1\|4806221_4806410_+	hypothetical protein	NA	NA	NA	NA
WP_080030374.1\|4807411_4809199_-	hypothetical protein	NA	NA	NA	NA
WP_077249576.1\|4811529_4812852_+	hypothetical protein	NA	NA	NA	NA
WP_089613743.1\|4814571_4815784_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.4e-101	57.8
WP_001364382.1\|4815962_4816586_-	hypothetical protein	NA	NA	NA	NA
WP_063073982.1\|4816895_4817309_-	hypothetical protein	NA	NA	NA	NA
WP_000270991.1\|4817305_4817689_-	hypothetical protein	NA	NA	NA	NA
WP_155120838.1\|4817818_4817980_-	hypothetical protein	NA	NA	NA	NA
WP_000148635.1\|4817948_4818518_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000453333.1\|4819263_4819476_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_077891308.1\|4820124_4820385_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001170556.1\|4820470_4821043_+	hypothetical protein	NA	NA	NA	NA
WP_001486476.1\|4821157_4822663_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_072647789.1\|4823843_4824716_+	GTPase family protein	NA	NA	NA	NA
WP_080030376.1\|4825088_4827935_+	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_072647787.1\|4828262_4829081_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.1e-46	39.7
WP_072647786.1\|4829172_4829658_+	antirestriction protein	A9J566	Pseudomonas_phage	3.1e-13	31.7
WP_001186747.1\|4829673_4830150_+	RadC family protein	NA	NA	NA	NA
WP_001405861.1\|4830212_4830434_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	2.5e-10	45.8
WP_001406130.1\|4830596_4830965_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000854721.1\|4831054_4831432_+	toxin	NA	NA	NA	NA
WP_072647689.1\|4831428_4831917_+	hypothetical protein	NA	NA	NA	NA
WP_000839239.1\|4831928_4832126_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_072647690.1\|4832210_4833077_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001143297.1\|4833148_4833412_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_000779483.1\|4833408_4833735_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001218820.1\|4834198_4835461_+	DUF4102 domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	4.5e-80	42.8
4833983:4834001	attR	NA	NA	NA	NA
WP_000344091.1\|4835912_4839428_+	ATP-binding protein	NA	NA	NA	NA
WP_001026222.1\|4839536_4841036_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_001350744.1\|4841210_4841957_-	porin family protein	NA	NA	NA	NA
WP_000758687.1\|4842316_4843327_-	P fimbria tip G-adhesin PapG-II	NA	NA	NA	NA
WP_000620429.1\|4843370_4843871_-	P fimbrial tip protein PapF	NA	NA	NA	NA
WP_000723802.1\|4843945_4844467_-	P fimbrial minor subunit PapE	NA	NA	NA	NA
WP_000597712.1\|4844493_4845030_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_000261303.1\|4845039_4845621_-	protein papJ	NA	NA	NA	NA
WP_000265730.1\|4845657_4846392_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001682408.1\|4846522_4847200_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|4847199_4847547_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|4847566_4849138_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000654934.1\|4849169_4851680_-	P fimbrial usher protein PapC	NA	NA	NA	NA
WP_001082319.1\|4852897_4853701_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|4853700_4854537_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000018322.1\|4854754_4855570_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	7.9e-163	99.6
WP_080030377.1\|4855727_4858613_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.4e-190	39.8
WP_000904897.1\|4858738_4859362_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
WP_085967404.1\|4859392_4860521_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.7e-51	40.1
WP_001352368.1\|4860591_4861800_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0

DBSCAN-SWA_16

4868315 : 4924386

Bluetongue_virus(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339197.1\|4868315_4869524_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_071940977.1\|4869593_4869830_-\|transposase	transposase	A4KWT9	Enterobacteria_phage	2.1e-31	100.0
WP_000930062.1\|4870419_4870734_-	major pilus subunit operon regulatory protein PapB	NA	NA	NA	NA
WP_021512463.1\|4871177_4871444_+	P fimbrial regulatory protein KS71A	NA	NA	NA	NA
WP_001445143.1\|4872064_4872316_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|4872209_4872512_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|4872598_4873414_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001339197.1\|4873885_4875094_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000986600.1\|4876078_4877434_+	alpha-galactosidase	NA	NA	NA	NA
WP_032151411.1\|4877536_4878958_+	melibiose:sodium transporter MelB	NA	NA	NA	NA
WP_000198733.1\|4879096_4879726_-	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_000066681.1\|4879848_4881495_-	class I fumarate hydratase	NA	NA	NA	NA
WP_000899522.1\|4881572_4882913_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_000611288.1\|4883483_4884203_-	two-component system response regulator DcuR	NA	NA	NA	NA
WP_001216477.1\|4884199_4885831_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_000371704.1\|4886011_4886242_+	4Fe-4S mono-cluster protein YjdI	NA	NA	NA	NA
WP_000405647.1\|4886253_4886526_+	N-acetyltransferase	NA	NA	NA	NA
WP_000398619.1\|4886752_4887049_+	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_001173343.1\|4887076_4887250_+	type V toxin-antitoxin system toxin GhoT	NA	NA	NA	NA
WP_001295074.1\|4887368_4888886_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.7e-87	38.0
WP_000856835.1\|4889122_4890580_-	dipeptide/tripeptide permease DtpC	A0A0P0IY73	Acinetobacter_phage	1.8e-48	29.6
WP_001295383.1\|4890638_4892786_-	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000092909.1\|4892865_4894200_-	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001187177.1\|4894565_4896104_-	CadC family transcriptional regulator	NA	NA	NA	NA
WP_001290247.1\|4896852_4897422_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000839281.1\|4897518_4897716_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000777541.1\|4897727_4898216_-	hypothetical protein	NA	NA	NA	NA
WP_000854753.1\|4898212_4898587_-	toxin	NA	NA	NA	NA
WP_001278232.1\|4898676_4899045_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000692303.1\|4899207_4899429_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
WP_001186710.1\|4899491_4899968_-	RadC family protein	NA	NA	NA	NA
WP_000860065.1\|4899979_4900459_-	antirestriction protein	A9J566	Pseudomonas_phage	2.6e-12	31.5
WP_080030379.1\|4900540_4901359_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	9.4e-47	39.0
WP_001278282.1\|4901457_4901691_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_001097364.1\|4901696_4902374_-	hypothetical protein	NA	NA	NA	NA
WP_032216515.1\|4902492_4903377_-	GTPase	NA	NA	NA	NA
WP_032216516.1\|4903482_4904427_+	hypothetical protein	NA	NA	NA	NA
WP_032216517.1\|4904423_4905233_-	hypothetical protein	NA	NA	NA	NA
WP_000778605.1\|4906562_4907093_-	hypothetical protein	NA	NA	NA	NA
WP_001075491.1\|4907762_4908494_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_085949305.1\|4908604_4909878_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.3e-175	98.0
WP_000792543.1\|4910025_4912074_+	TonB-dependent siderophore receptor IreA	A0A0P0I887	Acinetobacter_phage	1.1e-11	33.5
WP_025492107.1\|4914634_4914826_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	2.4e-06	96.2
WP_089078998.1\|4915401_4916675_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	8.0e-170	95.3
WP_001126822.1\|4917140_4917707_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000991577.1\|4917964_4918537_+	hypothetical protein	NA	NA	NA	NA
WP_000958152.1\|4918605_4918842_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_154071811.1\|4918838_4918994_+	hypothetical protein	NA	NA	NA	NA
WP_080030380.1\|4919107_4919656_+	hypothetical protein	NA	NA	NA	NA
WP_080030381.1\|4919674_4919923_-	osmoprotectant transport activator ProQ	Q2A0A1	Sodalis_phage	7.1e-06	37.7
WP_001323513.1\|4919991_4920183_-	hypothetical protein	NA	NA	NA	NA
WP_032346664.1\|4921775_4921889_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.2e-08	74.3
WP_001339197.1\|4923177_4924386_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0

DBSCAN-SWA_17

5156468 : 5219877

Escherichia_phage(48.0%)

transposase,holin,head,portal,tail,terminase,plate,protease,integrase,capsid,lysis

attL 5159648:5159664|attR 5227120:5227136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208242.1\|5156468_5156999_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293341.1\|5157008_5158340_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000139496.1\|5158406_5159333_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872908.1\|5159425_5159911_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
5159648:5159664	attL	NA	NA	NA	NA
WP_021578173.1\|5159970_5160645_+	hypothetical protein	NA	NA	NA	NA
WP_000232687.1\|5160767_5161394_+	hypothetical protein	NA	NA	NA	NA
WP_001296623.1\|5161432_5161678_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|5162104_5162950_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136788.1\|5162972_5164481_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250651.1\|5164710_5165721_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_001600800.1\|5165817_5166564_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_021578172.1\|5166568_5166997_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|5167023_5167323_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155257.1\|5167534_5167975_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802226.1\|5168075_5168675_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|5168782_5169550_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_000708998.1\|5169604_5170360_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001045704.1\|5170466_5171456_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591795.1\|5171774_5172737_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076742.1\|5172917_5173820_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_000468308.1\|5174055_5174274_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000882982.1\|5174355_5175519_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	6.3e-206	99.7
WP_000978879.1\|5175518_5175998_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.6e-84	99.4
WP_080030418.1\|5176012_5178460_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	97.8
WP_000785970.1\|5178452_5178572_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|5178604_5178880_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|5178936_5179455_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286679.1\|5179467_5180658_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	6.2e-225	99.7
WP_080030419.1\|5180717_5181311_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.9e-104	97.0
WP_001067855.1\|5181587_5182292_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_024266332.1\|5182493_5183123_-	hypothetical protein	NA	NA	NA	NA
WP_001617865.1\|5183586_5184462_-	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
WP_000050481.1\|5184788_5186330_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|5186734_5187574_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|5187567_5187915_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|5188078_5188870_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_032490158.1\|5188974_5189448_-	trimethoprim-resistant dihydrofolate reductase DfrA16	A0A1B2IBQ4	Erwinia_phage	3.1e-18	32.9
WP_015057121.1\|5189603_5190563_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_001067855.1\|5190453_5191158_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_089078998.1\|5191304_5192578_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	8.0e-170	95.3
WP_080030421.1\|5192773_5193193_+\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	7.2e-35	54.4
WP_080030422.1\|5193164_5193767_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	7.8e-99	92.0
WP_080030423.1\|5193766_5195131_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.6e-182	68.6
WP_080030424.1\|5195127_5195739_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.4e-116	99.0
WP_024247206.1\|5195731_5196640_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	3.7e-161	99.3
WP_080030425.1\|5196644_5196992_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	7.2e-57	98.3
WP_080030426.1\|5196988_5197624_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	6.5e-112	98.1
WP_021538487.1\|5197690_5198143_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	3.1e-76	98.7
WP_000917188.1\|5198135_5198603_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.1e-81	99.4
WP_072134039.1\|5198565_5198739_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	6.8e-24	94.7
WP_080030427.1\|5198710_5199136_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7LDJ6	Escherichia_phage	1.2e-64	94.3
WP_080030428.1\|5199123_5199549_-	protein lysA	U5N096	Enterobacteria_phage	1.8e-57	96.5
WP_001144101.1\|5199563_5200061_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|5200060_5200342_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_000846399.1\|5200345_5200549_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988633.1\|5200548_5201058_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_080030429.1\|5201157_5201901_-\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	7.8e-125	98.8
WP_023147720.1\|5201904_5202978_-\|capsid	phage major capsid protein, P2 family	Q94MK7	Enterobacteria_phage	8.7e-202	99.4
WP_001085953.1\|5203036_5203891_-\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	4.6e-137	100.0
WP_000156837.1\|5204064_5205837_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
WP_000038161.1\|5205836_5206871_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	1.9e-201	100.0
WP_025491973.1\|5207266_5208250_+	DNA (cytosine-5-)-methyltransferase	Q7Y4B5	Escherichia_virus	3.4e-120	63.3
WP_001469928.1\|5208257_5209214_-	hypothetical protein	NA	NA	NA	NA
WP_000742296.1\|5209216_5210392_-	hypothetical protein	NA	NA	NA	NA
WP_080030430.1\|5210588_5212883_-	replication endonuclease	M1SV59	Escherichia_phage	0.0e+00	97.9
WP_000027664.1\|5212872_5213148_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_001113264.1\|5213144_5213369_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001461841.1\|5213371_5213671_-	hypothetical protein	S4TUD1	Salmonella_phage	1.4e-45	99.0
WP_000557703.1\|5213670_5213895_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217682.1\|5213958_5214459_-	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	1.7e-91	99.4
WP_001284599.1\|5214923_5215112_-	hypothetical protein	NA	NA	NA	NA
WP_025491971.1\|5215166_5215439_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.5e-38	78.9
WP_000703053.1\|5215586_5215880_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.0e-32	64.9
WP_000027751.1\|5215992_5216973_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	4.1e-182	96.9
WP_001223800.1\|5217158_5217659_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_001033722.1\|5217808_5218507_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580424.1\|5218503_5219877_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	26.2
5227120:5227136	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019944

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection