CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020464	Lactobacillus rhamnosus strain Pen chromosome, complete genome	3 crisprs	csa3,cas3,WYL,cas14j,cas9,cas1,cas2,csn2,DEDDh,DinG	1	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020464_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020464_1

905323-906415

TypeII

Consensus_repeat	Method
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	PILER-CR
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CRISPRCasFinder
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CRT

16 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP020464_1

>merge|NZ_CP020464|1|905323-906415|PILER-CR,CRISPRCasFinder,CRT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTAGAATACGATTATAAGACAGTAGTTTGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAGTAAGGTAGCCAAATACAACCATAAGGGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAACTATCTAACACGCTATACACAGAATGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTAATATGCAGGCGGCGACTGATTTATTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTAATATGCAGGCGGCGACTGATTTATTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGATTTGCGAGATGTCGCGATAAGAAGTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGACAACAGACTCCGTCAACATCAGTCTTAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACATAAACATCGTATGCGAATCGTAACAACGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAGTTGATTGAGGCGCGGATGTACATTCCTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGGTGTACTGCTTAGCTGACTCCCACGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCTCGTGACTTGTCGTGATATGCATACGCGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCGGCATCTTCAAAATCAAAACGACGCGCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGCAACATATCAATCAAGCCGAAAAAAAGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGATGACGAAGTGAGTTTGCCCACCGCTTGGTCTCAGGTAGATGTCAGGTCAATCAGTTCAAGAACACTCGGGTATTGACAAAGATCGACGCGGCAGTCTCAGGTAGATGTCAGATCAAAAACCTTCAGTGA

>NZ_CP020464|1|1|905323-906349|PILER-CR
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAGAATACGATTATAAGACAGTAGTTTGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTAAGGTAGCCAAATACAACCATAAGGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AACTATCTAACACGCTATACACAGAATGGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATTTGCGAGATGTCGCGATAAGAAGTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GACAACAGACTCCGTCAACATCAGTCTTAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	ATAAACATCGTATGCGAATCGTAACAACGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTTGATTGAGGCGCGGATGTACATTCCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CCGTTTTGGTTGCAAAACGAACCGATTACG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGGTGTACTGCTTAGCTGACTCCCACGTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CTCGTGACTTGTCGTGATATGCATACGCGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GCGGCATCTTCAAAATCAAAACGACGCGCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGCAACATATCAATCAAGCCGAAAAAAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATGACGAAGTGAGTTTGCCCACCGCTTG
GTCTCAGGTAGATGTCAGGTCAATCAGTTCAAGAAC

>NZ_CP020464|1|1|905323-906415|CRISPRCasFinder
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAGAATACGATTATAAGACAGTAGTTTGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTAAGGTAGCCAAATACAACCATAAGGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AACTATCTAACACGCTATACACAGAATGGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATTTGCGAGATGTCGCGATAAGAAGTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GACAACAGACTCCGTCAACATCAGTCTTAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	ATAAACATCGTATGCGAATCGTAACAACGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTTGATTGAGGCGCGGATGTACATTCCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CCGTTTTGGTTGCAAAACGAACCGATTACG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGGTGTACTGCTTAGCTGACTCCCACGTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CTCGTGACTTGTCGTGATATGCATACGCGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GCGGCATCTTCAAAATCAAAACGACGCGCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGCAACATATCAATCAAGCCGAAAAAAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATGACGAAGTGAGTTTGCCCACCGCTTG
GTCTCAGGTAGATGTCAGGTCAATCAGTTCAAGAAC	ACTCGGGTATTGACAAAGATCGACGCGGCA
GTCTCAGGTAGATGTCAGATCAAAAACCTTCAGTGA

>NZ_CP020464|1|1|905323-906415|CRT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAGAATACGATTATAAGACAGTAGTTTGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTAAGGTAGCCAAATACAACCATAAGGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AACTATCTAACACGCTATACACAGAATGGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TTTAATATGCAGGCGGCGACTGATTTATTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATTTGCGAGATGTCGCGATAAGAAGTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GACAACAGACTCCGTCAACATCAGTCTTAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	ATAAACATCGTATGCGAATCGTAACAACGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AGTTGATTGAGGCGCGGATGTACATTCCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CCGTTTTGGTTGCAAAACGAACCGATTACG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGGTGTACTGCTTAGCTGACTCCCACGTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	CTCGTGACTTGTCGTGATATGCATACGCGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	GCGGCATCTTCAAAATCAAAACGACGCGCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	AAGCAACATATCAATCAAGCCGAAAAAAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	TGATGACGAAGTGAGTTTGCCCACCGCTTG
GTCTCAGGTAGATGTCAGGTCAATCAGTTCAAGAAC	ACTCGGGTATTGACAAAGATCGACGCGGCA
GTCTCAGGTAGATGTCAGATCAAAAACCTTCAGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020464.1\|WP_005684679.1\|904621_905302_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP020464.1\|WP_005684689.1\|915697_917146_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP020464.1\|WP_005684690.1\|917605_918391_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585
NZ_CP020464.1\|WP_005684692.1\|918456_919101_-\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_CP020464.1\|WP_005684680.1\|906463_906952_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP020464.1\|WP_005684677.1\|903436_904342_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP020464.1\|WP_005684670.1\|892983_894408_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP020464.1\|WP_005684683.1\|908444_908870_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NZ_CP020464.1\|WP_005684669.1\|891447_892752_+\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP020464.1\|WP_005684685.1\|909081_910776_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP020464.1\|WP_005684678.1\|904319_904625_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP020464.1\|WP_005684681.1\|907159_908260_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020464.1\|WP_005684671.1\|894404_895418_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP020464.1\|WP_005684687.1\|912522_913395_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP020464.1\|WP_005684673.1\|897137_898865_+\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP020464.1\|WP_005684688.1\|913843_915679_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_CP020464.1\|WP_005713196.1\|895414_897157_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP020464.1\|WP_005713195.1\|899159_903245_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP020464.1\|WP_005684686.1\|910768_912391_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP020464.1\|WP_005684668.1\|890327_891347_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645

Protein	Function_ID	Function_description	E-value
NZ_CP020464.1\|WP_005684679.1\|904621_905302_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.45689e-68
NZ_CP020464.1\|WP_005684689.1\|915697_917146_+\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP020464.1\|WP_005684690.1\|917605_918391_+\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	6.44123e-175
NZ_CP020464.1\|WP_005684692.1\|918456_919101_-\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.000401509
NZ_CP020464.1\|WP_005684680.1\|906463_906952_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.86914e-06
NZ_CP020464.1\|WP_005684677.1\|903436_904342_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.0326e-92
NZ_CP020464.1\|WP_005684670.1\|892983_894408_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP020464.1\|WP_005684683.1\|908444_908870_+\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	1.31728e-34
NZ_CP020464.1\|WP_005684669.1\|891447_892752_+\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP020464.1\|WP_005684685.1\|909081_910776_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	4.03987e-88
NZ_CP020464.1\|WP_005684678.1\|904319_904625_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.0725e-23
NZ_CP020464.1\|WP_005684671.1\|894404_895418_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	2.7959e-90
NZ_CP020464.1\|WP_005684687.1\|912522_913395_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.27666e-43
NZ_CP020464.1\|WP_005684673.1\|897137_898865_+\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	8.6175e-162
NZ_CP020464.1\|WP_005684688.1\|913843_915679_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP020464.1\|WP_005713196.1\|895414_897157_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP020464.1\|WP_005713195.1\|899159_903245_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	2.82092e-120
NZ_CP020464.1\|WP_005684686.1\|910768_912391_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.57606e-97
NZ_CP020464.1\|WP_005684668.1\|890327_891347_-\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	9.30907e-117

>NZ_CP020464.1|WP_005684679.1|904621_905302_+|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLELDLDKLFQRLIIKKVSQLIEDQRLIELIEQSQRLAMSLLREPLLSELPVTVEPGGKLEQIMKYCNVHFDEEVLTEPFSKVEAAIQTLAKLEEKRLVIFANISHYLDVESLSKLLDQVKNTSLELLLIEFSDVERRKFFEKCQYIYIDRDFMDSRELID
>NZ_CP020464.1|WP_005684678.1|904319_904625_+|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVATSKDRRNYRRFRRALIDEGFLMIQYSVYVRVCKTKKSAAYMEQRIATVKPPTGTVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NZ_CP020464.1|WP_005684677.1|903436_904342_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIITQHCKVTTKQHSLVVQTNGDVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKISNQAQVAKLCGHDAQGLLDDLDALEINDVSNREASAARRYFKLMFGNDFSRSDICATNAALNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTLDVKYGLIDLLNLEITFNGKKALLQNAVADHVENCLAFLDGKAKVCRIEVKFPDEVSSHAINDHV
>NZ_CP020464.1|WP_005713195.1|899159_903245_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAAERRESRTTRRRLSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPVQLQQRELDQIIANQSKYYDWLAKPNPVEKHRASKPYQLDELLTFRIPYYVGPLITPKEQAESRENVFAWMIRKDPSGNITPYNFDEKVDCPASANMFIQRMKNTDTYLIGEDVLPKRSLLYQKYEVLNELNNVSIDGRRLGADQKQRLIREVFERHSSVTIKQVAENLVAHGDFAKRPEIRGLADEKRFLSSLSTYHQLKKILHEAIDDPTKEHDIENIITWSTVFEDAAIFKTELAKISWLDSDTIKALSNIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLSNHNLMQILTDETLKTTMAELNQDKLKADDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQDPSWLYIETADGPGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFASKMAATWRKWHEAGLISGRKLRNLMLRPDEIDKFAHGFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIVAKDTGEIVWDKERDIQELDRIYNFKRMLITHEVYFETADLFKQTIYAAKDSKERGGSKQLIPKKQGYPTQVYGGYTRENTAYLAVVKTVEKKADVYRVVRIATSQVAALKEARAQSTVKERELLKKFLTTKFTKIGKNGKKAITPFDIVIPRVPREQLFHNKRYGFFMVNSDTLMHNYQELWMSRSDQQILSKLVKSAKTVENGQVGRLFENIVEQINKYFPLYDINQFRKKLDQSKDIFSKLPLEGNGTTSGKRETIQNILTGAGTGAKNGDLKNLGIKTPFGFLQVPSGIVLDDDTTLIYQSPTGMLNRIVRLSEL
>NZ_CP020464.1|WP_005684673.1|897137_898865_+|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPPQQPVPTTFNKIKLNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTNGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDASDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTVLWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQRLAEQNKRYQNLYALDAGLR
>NZ_CP020464.1|WP_005713196.1|895414_897157_+|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKVAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKIPHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP020464.1|WP_005684671.1|894404_895418_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFIRLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NZ_CP020464.1|WP_005684670.1|892983_894408_+|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NZ_CP020464.1|WP_005684669.1|891447_892752_+|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELIWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKHQVQTLHQAIVTASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQSAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDTLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVRQAYHIGTTAPKKLPLIHEVIRP
>NZ_CP020464.1|WP_005684668.1|890327_891347_-|adenosine-deaminase
MDFATLHTLGKTELHCHLDGSLSLNCIRQLAPKINQPLPANDNALRKLVQAPENSENLADYLKTFDFIAPLLQTKEALQMAAFDVVAQAACENVRYIEIRFAPVLSTAGDLTVSQATEAVIAGLHQAMAQFDIIAKALVCGMRQLPNADNAAMFTANAPLVGDTLVGGDFAGNEADYPTKVCAPAIETAQRLGVPLTFHAGECHCPQNIAEAIRLGVPRIGHATACFDQPELIQTIVKTHTTIELCLTSNLQTKAARSLAEFPYQALKKAGAAITINTDNRTVSNTTLTHEYERYQAYFDTTAADFLTFNLNAVNAAFIPETTKQTLRMRLKQDYAPYL
>NZ_CP020464.1|WP_005684680.1|906463_906952_+|GNAT-family-N-acetyltransferase
MSKAKLILSPVFYTDLKEIRHMYQQAFKSLYGKYQDRETNPYCESLKSLQKKFKRPNNAFFFITVEDKHIGLIRVVTDLKNSAARISPFLILPFYQGKGYAQLGLQLIEEQFPLIQTWYVDTIAEEPKLVHLYRKVGFQQLPDRETTINEHMHIIYFVKVRS
>NZ_CP020464.1|WP_005684681.1|907159_908260_+|hypothetical-protein
MKKVAIIGATLLLSVGLVACSGGSGSSSSKSSSTTSQTSNAKVKIKTGADANAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYPSGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVAEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQILAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTVAELETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIKAAKAAK
>NZ_CP020464.1|WP_005684683.1|908444_908870_+|NusG-domain-II-containing-protein
MPWLKRYVRPLDYVIVVLLFIACFIPAGIFSLTEANVNTSQKVAVISVNGQVKRRIKLGAHTRHQQFTLYPAKGQYNIIEVEGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NZ_CP020464.1|WP_005684685.1|909081_910776_+|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGGIEALFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWVGYVVGYERHHRHAWAMSAKRELRDRYFAALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLIGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLKMGGRFMDDLRGMTTLVMYGAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKEVPDTVKITDNRPLSQITLDQVSVGYAADAPLVTGINATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVSANEYLFSGTIQENLLLGNRFGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANAAVILQAVKKLSRHKIVLFISHDLKAMTQADEVWFTHDHQLTVANHQTLYQKQPAYRQLVDNPEMMENEVNSND
>NZ_CP020464.1|WP_005684686.1|910768_912391_+|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMLAELAKVVVLVLAAMMLFDPHNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVRLAPAKLDTQASGKLLKLIGSDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEAAAFQQAQFSQLLKNMAATAVIVGGWLLMIWLSGWPQPTTIQQALLAIFPLTFGPLLALNNLPGSLLNGFAAAKNLFKLLQEQPLNAALPNATQTVTTIDQIQVDHVGFSYPTRREAVLKNVTLTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQTPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRIYRFSEHQVVLATE
>NZ_CP020464.1|WP_005684687.1|912522_913395_+|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKVYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPEDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NZ_CP020464.1|WP_005684688.1|913843_915679_+|PTS-glucose-transporter-subunit-IIA
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFLGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVAALASILSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAATAVVADHAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDGATDDDALMTLA
>NZ_CP020464.1|WP_005684689.1|915697_917146_+|family-1-glycosylhydrolase
MTNLKFPKQFMWGGATAANQLEGAYHEDGKGLSIADVLPQGKDRFAIVNQPDFDWTIDESKYRYPNHLGIDHYHHFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEQQPNQAGLAFYDALIAECLKYGIEPIVTISHYEMPLHLVTKYGGWKNKALITFYKRFAETVLTRYFKQVKYWMTFNEINSAFSFPVMSQGLVASNGADDKRNIFQAWHNQFVASAWAVKMGHELDPQLQIGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDAMMAEYGVKFQELEFSAAELALLKHYPVDYIGFSYYMSAVIETTQEHHAEVGGNLLSGLKNPFLKASEWGWQIDPIGLRIALNQLYDRYRKPLFIVENGLGAIDRPDEKGEVQDDYRIDYLRQHIEQMGAAIHDGVDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDDGEGTLARSKKKSFDWYRRVIASNGADLA
>NZ_CP020464.1|WP_005684690.1|917605_918391_+|SDR-family-oxidoreductase
MYRDLNGKVAVVTGGSKGIGAGIAERFGQEHMAVVINYLGDHEGARKTADTVIKNGGQAVSIHADVSTEAGIASLVKTAESEFGRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINISSVHEQIPWPTFASYAAAKGSVKLFTETIAMEYANRGIRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NZ_CP020464.1|WP_005684692.1|918456_919101_-|ABC-2-transporter-permease
MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIILLLLPFLNGDLATPLAGGITGLSIGLLMMPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIRDSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAVFLERSFQVDLDALKPWFGVIVAIFISAFIFSWWLSTVLYKKREF

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Crispr_ID: NZ_CP020464_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020464_2

1823579-1823693

Orphan

Consensus_repeat	Method
GCGTTATGGGCATAAGCTAGAATGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020464_2

>merge|NZ_CP020464|2|1823579-1823693|CRISPRCasFinder
GCGTTATGGGCATAAGCTAGAATGTAAGTCGCCCGGGTTGCCCATTGCGACCAAGGCCCTTATGTGCAGGTTTCTGCGCCGTCAAGAGCGTTATGGGCGTAAGCTAGAATGTAAG

>NZ_CP020464|2|2|1823579-1823693|CRISPRCasFinder
GCGTTATGGGCATAAGCTAGAATGTAAG	TCGCCCGGGTTGCCCATTGCGACCAAGGCCCTTATGTGCAGGTTTCTGCGCCGTCAAGA
GCGTTATGGGCGTAAGCTAGAATGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020464.1\|WP_005710095.1\|1832671_1833343_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP020464.1\|WP_005713830.1\|1824819_1825272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020464.1\|WP_005710115.1\|1818184_1819840_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP020464.1\|WP_005710107.1\|1824497_1824797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020464.1\|WP_005685619.1\|1823901_1824456_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP020464.1\|WP_005710111.1\|1822210_1823026_-\|ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP020464.1\|WP_005685606.1\|1833388_1834051_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP020464.1\|WP_005685614.1\|1825983_1827666_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP020464.1\|WP_005685623.1\|1819857_1820835_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP020464.1\|WP_005685629.1\|1812477_1814322_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP020464.1\|WP_005685615.1\|1825766_1825979_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	unknown	unknown	gnl\|CDD\|184224
NZ_CP020464.1\|WP_005710101.1\|1827917_1828868_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP020464.1\|WP_005685627.1\|1815371_1815653_-\|UPF0223-family-protein	unknown	unknown	gnl\|CDD\|377494
NZ_CP020464.1\|WP_005689192.1\|1816778_1818182_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP020464.1\|WP_005710099.1\|1828996_1830214_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226925
NZ_CP020464.1\|WP_005685628.1\|1814574_1815369_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP020464.1\|WP_005710113.1\|1820837_1821950_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP020464.1\|WP_005710119.1\|1815642_1816533_-\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|223117
NZ_CP020464.1\|WP_005713827.1\|1830219_1832685_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NZ_CP020464.1\|WP_005710125.1\|1811062_1812232_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843

Protein	Function_ID	Function_description	E-value
NZ_CP020464.1\|WP_005710095.1\|1832671_1833343_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	8.90693e-10
NZ_CP020464.1\|WP_005710099.1\|1828996_1830214_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226925	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only].	6.40458e-50
NZ_CP020464.1\|WP_005710115.1\|1818184_1819840_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP020464.1\|WP_005685614.1\|1825983_1827666_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP020464.1\|WP_005685619.1\|1823901_1824456_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.93241e-64
NZ_CP020464.1\|WP_005710111.1\|1822210_1823026_-\|ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	2.14335e-07
NZ_CP020464.1\|WP_005685606.1\|1833388_1834051_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.51029e-61
NZ_CP020464.1\|WP_005713827.1\|1830219_1832685_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP020464.1\|WP_005685623.1\|1819857_1820835_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP020464.1\|WP_005685629.1\|1812477_1814322_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP020464.1\|WP_005685615.1\|1825766_1825979_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	gnl\|CDD\|184224	PRK13667, PRK13667, hypothetical protein; Provisional.	8.4006e-34
NZ_CP020464.1\|WP_005710101.1\|1827917_1828868_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.21771e-49
NZ_CP020464.1\|WP_005685627.1\|1815371_1815653_-\|UPF0223-family-protein	gnl\|CDD\|377494	pfam05256, UPF0223, Uncharacterized protein family (UPF0223). This family of proteins is functionally uncharacterized.	9.77603e-41
NZ_CP020464.1\|WP_005689192.1\|1816778_1818182_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP020464.1\|WP_005685628.1\|1814574_1815369_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	5.0852e-67
NZ_CP020464.1\|WP_005710113.1\|1820837_1821950_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NZ_CP020464.1\|WP_005710119.1\|1815642_1816533_-\|lactate-dehydrogenase	gnl\|CDD\|223117	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion].	7.32651e-17
NZ_CP020464.1\|WP_005710125.1\|1811062_1812232_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	1.01119e-97

>NZ_CP020464.1|WP_005710111.1|1822210_1823026_-|ATPase
MLMMVSSGLTRYEAQKAQKTTTIRQETISKTNLFLPLLMTLAGVSSLILVMSHSWLLTAIVAILASLTVMVIAYLAKAITRHQGQPQQPVLVVRDGLVRQVRAQDLVVGDVLMLTAGEKLPVDVALAPGASVTLPRDLAGLLILLNRRVPTGVGIAGAVMATDTQATVTAVLNDGLLDHGLKQLAGQSVTTTPTSLVTSAVAGLKLVLQQICRIFRLAVSVVSLEMLKNKQIDRDEQIRVEIAFAHHATLVGAMKHHSKTSDFRHNQDPVS
>NZ_CP020464.1|WP_005710113.1|1820837_1821950_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MAKQHAAVDFKQLLDNQDADFKPTIQILDEVGKVVNPDIMPDLSDDQLVDLMSKMVWQRVLDQRATALNRQGRLGFYAPSAGEEASMIGSHAAMKSSDWLLPAYRDLPQLIQHGLPLDKAFLWSRGHVAGNEYPEDFHALPPQIIIGAQYVQTAGVALGLKKNGSDEVAFTYTGDGGTSQGDFYEGVNFAGHFKAPALFIVQDNGFAISVPRASQTAAKTLAQKAVAAGVPGVQVDGMDALAVYEVTKEARAWAAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKETDELWQKRDPLIRMRNYLTDKGLWRKDKEDALIEKVKDEIKDAINKADKAPQQTVSRFLKDTYEVAPQNVAEQLAEFQGKESK
>NZ_CP020464.1|WP_005685623.1|1819857_1820835_-|alpha-ketoacid-dehydrogenase-subunit-beta
MAQKTMIQAITDALDVELANDPKTLVFGEDVGKNGGVFRATDGLQAKHGEDRVFDTPLAESGISGLAIGLALTGWRPIPEIQFFGFVFETMDSIGGQMSRMRYRMGGTRSMPITIRAPFGGGVHTPEMHSDNFEGLIAQFPGMRVVIPSNPYDAKGLLISSIRSNDPVLFLEHMKLYRSFRQDVPDGTYTVPLDKAAVTREGTDVSIITYGAMVREALKAADNLAKDGINAEIVDLRTIAPLDVDTIIASVKKTHKAVVVQEAQRMAGVAANVISEISERAILSLEAPIGRVAAPDTPFPFGQAENIWLPNAKDIEAKVRETVNF
>NZ_CP020464.1|WP_005710115.1|1818184_1819840_-|dihydrolipoyllysine-residue-acetyltransferase
MAFEFKLPELGEGLAEGEIVKWDVKPGDEIKEDDTLLEVQSDKSVEEIPSPVSGKILKILVPEGETASVGDLLVEIDDGSGPATQPAAAQPAAAPAAATDASAGNAPAAKSVYQFKLPELGEGLAEGEIVKWAVKPGDQIKEDDTLLEVQSDKSVEEIPSPVAGTVVKILVPEGETATVGEALVDIDAPGHNDTPVASGTAAAPQANTDTAAPAAAPAAAGSVPAITDPNREILAMPSVRQYAREQGIDISQVPATGKHGRITKADIDAFKAGAPAAAPAQPAATSAPKAAQPAPAATPAAPKPQPVAPYVSNSSEAELETREKMTPTRKAIAKAMLASKQRSPHVTSFDEVEVSKLMAHRKKYKQYAADKGIKLTFLPYIVKALVTVLREYPEFNASIDDTTDEIVYKHYFNIGIATNTDHGLYVPVIKNADAKSMFEIAKEISDNAQKAYDSKLKPDEMRGGSMTISNVGSIGGGWFTPVINQPEVAILGVGKIAKEPYVNADNEIVVGNLLKLSLSYDHRLIDGALAQTALNLMDKLLADPDLLLMEG
>NZ_CP020464.1|WP_005689192.1|1816778_1818182_-|dihydrolipoyl-dehydrogenase
MVVGDFAIDLDTVVIGSGPGGYVAAIRAAEMGQKVTVIENTFIGGVCLNVGCIPSKALINAGHRYQDALEASTFGINAKGADLDFKKTQDWKQNKVVHTLTSGVAMLLKKHKIETIMGTAFLKDDHSLRVMQKDSAQTYTFKNLIIATGSRPIEIKGFKFGKRILDSTGGLNLPEVPKEFVVIGGGYIGSELASAYANLGAHVTILEGTSSILPNFEKDMVQLVLNSFKKRGVTVITNAMAKEAEDTGNGVKVTYTADGKEQTIAADYVMVTVGRRPNTDDLGLDIVGIETTDRGLIKVDAQGRTNKPNIYAIGDIVPGAALAHKASYEGKIAAEAISGKASAVDYKAMPAVCFTDPELATTGMTLAEAKDKGIKAKASKFPFAANGRALSLAQTEGFVRLVTDENGTVIGGQVAGAGASDLISELTVAVEGGLNAEDLALTIHPHPTLSETIMDDAEVALGLPINI
>NZ_CP020464.1|WP_005710119.1|1815642_1816533_-|lactate-dehydrogenase
MQRVVVHGASTGTQGLLQMLIMSLLDLQVGCYEPDETLVDVAGLTALSQICHNTFVKVTPKVLKAADVLILTDTGTPADEGFVTTNITAIRKVLNSAMAAGFKGRIIVAMTHDELFTYFAQRFSGLNKRQVVGLGTFGATWQFEQFLAERLAVPAAQVTAYVVGTSQTPVLVWSRAYVGATPVLRLLDDQTIFSEAVKAVQTFLASTLTVMLGKLVEPILAAFAGDGVIGTFTHLRDADDGTGQISSSPVLLDERGVVTLAMVAGSDDEEAALSQAIQAAQTQIEAIEQGANKNES
>NZ_CP020464.1|WP_005685627.1|1815371_1815653_-|UPF0223-family-protein
MKANYHYPLDLDWTTAEKIKVTTFYALVEDAYEHGVDRDNLLAAYKGFKQVVPDKGTERQLGREFETLSGYSMYTVVQMARQGVSQKIRVRVS
>NZ_CP020464.1|WP_005685628.1|1814574_1815369_-|inositol-monophosphatase-family-protein
MTQDPEKIRETLIGWFAASRKRILTAMAQPLDVAQKSNRNDLVTNVDKANQQFLIEHIKTDFPTARIIGEEGHGHDDTDLNGLVFFVDPIDGTMNFVKQQAHFAVMIGVYRDGQPIVGAIMDVMRNEVLSGGPNLPVTFAGRQLKPLPDLPLKDGLLGVAGPMAIKNRLHLGDVALASSGARMSGSAGMEFIEVALGRQVGYVSYLQPWDVAAGMAITQGLGVEFSREDGSAINLSQPGVVVAATPQAHQTILAMMAGKSEQAH
>NZ_CP020464.1|WP_005685629.1|1812477_1814322_-|translational-GTPase-TypA
MKTRDDIRNIAIIAHVDHGKTTLVNEMLKQSDTLDQHIQLQDRAMDTNAIEKERGITILSKNTAVKYGDTTINILDTPGHADFGGEVERVMKMVDGVLLVVDAFEGPMPQTRFVLKKALEQHLTPIVVINKVDRPGARPEEVVDEVLELFIELGADDAQLEFPVVYASAVNGTSSMDSDLSTQKHTMNPLFETIIKTIPAPIDNSDEPLQFQVAMLDYNDYVGRIGIGRIFRGKIKIGDNVTVMKLDGSQKNFRVTKLFGFFGLTRTEINSAKAGDLIAVSGMDDIFVGETVTAADTPEALPILRIDEPTLQMMFVANDSPFAGREGKNVTARKLEERLKAQLQTDVSLRVDDTDQAGAWMVSGRGELHLSILVEEMRREGFELQLGRPEVIYRDIDGVTMEPFETVQIDTPEQYTGTVIDAMSQRKGEMQNMENEGNGQTRLTFLAPSRGLIGYSTEFLSSTGGYGIMNHTFEKYAPVIKNWEPGRTQGALVSINAGTATTYSLQSVEDRGQLFINAGTEVYEGMIVGQNSRENDIAVNVTKGKNLTNTRAAGKDHAAAIKTPKKMTLEESIEFLNDDEYCEVTPENIRLRKKILNTGERQKAAKRKKIAASK
>NZ_CP020464.1|WP_005710125.1|1811062_1812232_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MKKIRHVDYFILVPYLILCAIGIVMVYSASAYWVQRQYGAAETKYLVQQILFVILGIGTVFFFYKMSLKILRNRWVLFILMSTLLVLLVYLILHGRAVNGASAWITIGGFRLQPSEFAKMILIFYLAHMLSSRENSFQQENFRLHQMWQPLFMAGVIMFLVFIEPDTGGFAILFLITLVVVMSSGIPMRYGLLWVLGLIATGVLGYYIVSHYHFAGLENNYAYQRLVAAIHPFEKANAAGNQVVNSLYAINHGGWFGVGLGMSSQKLGYLPEPYTDFILAVIAEELGLVGTVVILSLLFFLVMRFYLIGVRSKNTYHTLIAYGIATMMLVQTIFNVGAVAGVIPVTGVTLPFISYGGSSMIVLSMAVGIMLNISYHSERTQRKVEKTHA
>NZ_CP020464.1|WP_005685619.1|1823901_1824456_+|peptide-deformylase
MYLMKDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKEHPFSIDPEAVLIH
>NZ_CP020464.1|WP_005710107.1|1824497_1824797_-|hypothetical-protein
MNDDQDLIMRQIKSFAQGLGAALGKNQRKSNQPVIVFHEAEVSLASYQKTLMTVIREKGLIAAQAQLKKWQQTRLSAHQYQRLNAWIQEQQLINRNPDK
>NZ_CP020464.1|WP_005713830.1|1824819_1825272_-|hypothetical-protein
MVWLLIVVLLVVLATLWLFRKRWRRNKAIQILLYHSQRLTDQAMAEALQQLGISTDKPMTSKPIADIWGHGVMAFSYQISSSLGKVTQPALEQALRQAARQLDIASSDPALPPFVLTDFFELEGELHIDVAFITNEATIEYVRDVNRVSS
>NZ_CP020464.1|WP_005685615.1|1825766_1825979_+|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein
MIYKVLYQKDKIQNPRRETTQTLYLEAPSAVEARALVEANTPYNIEFIQELSGNFLEYEEKSANFKLTTF
>NZ_CP020464.1|WP_005685614.1|1825983_1827666_+|ribonuclease-J
MKLNIKNNETAVFAVGGLGEIGKNMYGVQFQDEIIVIDAGIKFPEDDLLGIDYVISDYSYLVQNKDKIKALVITHGHEDHIGGIPYFLQQVPNVPIYAGPLAAALIRGKLEEHGLLRTTKLTEINEDTVLKFKKLSVEFFRTTHSIPDTLGIAVHTPQGIVIQTGDFKFDLTPVGDQPSPNFQKMCRFAEEGVLVLMSDSTNAEIPTFTKSERFVGKSIRHIFDRIDGRIIFATFASNISRIAQAADAAMAHGRKIAVFGRSMETAMVNGRELGYLNIPDDVLVDAHQLNSLPADKVMILCTGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTVSVNHVINQLSEAGAEVIHGKVNNVHTSGHGGQEDQKLMLRLIKPKFFMACHGEYRMQKIHCELAQQCGVPEKNCFIMENGDVLALTEKSARIAGHFPAGDVYIDGSGVGDIGNAVIRDRRMLSEEGLVVVVATINMQKQAVLAGPDLLSRGFIYMRESGELINQAQRRVYRTIKSTFSNNEKVTEATLKDAITSSLQEFLFDKTERHPVILPMLILL
>NZ_CP020464.1|WP_005710101.1|1827917_1828868_+|diacylglycerol-kinase-family-lipid-kinase
MAAVFYYLIYNPAAGGGAAIPIFKQVKAVLDQRQLPYAIKTSRYPGHTNIIAKQIGNFNTRDHAILLVIGGDGTLNQAINGLIDTRQHDLPVAYVPAGSGNDFARGIGMSEDPMHALEQVLQATKPVAIDIGRYHERTRDETGYFVNNIGIGFDAAVVSAANHSDSKQLLNKFHLGKLTYLFHVIGSLLTRRPFPVAVYEKGVRHFFHRAYICTTTNIPYFGGGIQIYKPADPTDGHLDLIIVEWFNIVSWAFAMIQLMRGKAPTSRAVHLFHAKKLTVETSSLEFGQMDGEEMGTRPFEIDFSVASQQFWIDRSI
>NZ_CP020464.1|WP_005710099.1|1828996_1830214_-|GNAT-family-N-acetyltransferase
MEDNIRKSLQIKSVTPKDLEQFNDLLTYVFQVTQKDLEQSGYEEGELERAKRPVLEKSDVLGWFHQNELVSSLAIYPCTVNIHGTLYQMAGLTGVGTYPEYAGHGLMHDLVKLGLEHMRQHKQWISYLYPYSIPFYRKKGWEIMSDHLTFDVKDTQLPKQVEVPGHVERLEIDDPDVIETYNRFAMKNHGAMIRNQLNWDEYWRWENEEERTAGVYYDANDEPQGYVLYWIADEVFHVKEMIYTNQEARVGLWNFISAHFSMVTHVKGKIYKNEPLHFLLDDGDIYQTIKPYYMARIVDVKAFLAQYPFAAETTEPFHFVVSDPLAPWNNGTFGVYWDEHQQVKITNRPVGEAITTDIQTLTTMLMSYRRPSYLAQIERLSASKHAIKLLENAVPMEEPYFSDYF
>NZ_CP020464.1|WP_005713827.1|1830219_1832685_-|ATP-dependent-RecD-like-DNA-helicase
MDRHEDSVTGRVKSIFFQNPTNFFKILLIDITATTITWTEPDIVVTGTFGDIKEDETYTFTGHVVDHPKYGQQFQADNYHVDRPTNKTGLINYLSSDKFPGIGPKTAEKIIDKLGVDAIDRILDDPESLKGLGISAAKQKMLVTNLKTNQGMERVIIGLNDYGFTSNMAGRIYQQYQNDALEVIKQNPYQLINDIDGIGFTRADQIAAKLAIAPDSQLRLGGAVMDTLQRLTDGEGDTFVDLKTLVTQTLDLLERARQVAVNPEAVGQAIVTLAKDNALVAEGKRIFPKRLYDSEWQIARQLKGLADAGRAAKQPALAEIKQTLATVQEETGIAYDEVQKKAIITALQSPIFLLTGGPGTGKTTVTDGIVRTYAQLHDLSLDRHEYTPDDPFPIMLAAPTGRAAKRISETTQLPASTIHRLLGLGVDTQEFAPNDLPDGLLIIDEMSMVDTYLFRTLLTALHPGMQIVLVGDKDQLPSVGPGQVFADLLRSQALPHAALTHIHRQDADSSIIPLAHAVNAGRLPDDFTRPQVDRSFLPCSPSQVPEVVGQVVQRAAVKQFSIADIQVLAPMYRGTAGIDRLNPLLQDILNPKRSARTKIVHFGETEYRIGDKILQLVNDPNQNVFNGEIGQIVGITLAKEAASKTDELTIDFDGNEITYKRSDFSKITLAYATSIHKAQGSEFPMVILPLTMQSRRMLRRNLLYTAITRAKSFLILVGELAAFETAVGEIAVNRHTGLVQRLQQAFGMTVSQPDVEKSTPATEVSQNAGQIDTNPSDLDNGISTDESNNYQLTPALVASQRIDPMIGMNGVTPQMFMTKEK
>NZ_CP020464.1|WP_005710095.1|1832671_1833343_-|tetratricopeptide-repeat-protein
MDSNILTAFNQGKHEEAIQAAVKAIDADPKNPKRYAVLTTMLISLKALDQAGELLAKARALFPDDLELQYTSGLFAYAQADFPAAAAWFTKCRQDETLKNDATYMLALSYQQAGQPKKALAFALTAHELAPEQTDAALLAADLLLGEQAFDAAAEILKPLLKTRQPQVLFTYGMALSAAGKDGSAYLDAAKQLDPKGYDQKAGTVADINRFLRLQEGGHDGQA
>NZ_CP020464.1|WP_005685606.1|1833388_1834051_-|histidine-phosphatase-family-protein
MTKLYFVRHGKTEWNNQGRYQGANGDSPLLPESFEQIKALADYLRGISFAHAYVSPLKRARVTAQTLIKDLNEPIPLTIMPALREFNLGKMEGMTFTDVAKHFPQELHAFRHEPAAYDPRKIHGESFPQLINRAIPAIVATVAMDRTGTANLLYVSHGAALAAVIQSLLGTPLAEIRKDGGLTNSSVTILQADGPSLPFKLLNWNETSFLPEPPKPTDTI

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Crispr_ID: NZ_CP020464_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020464_3

1943080-1943231

Orphan

Consensus_repeat	Method
GAACGCGTTATGGGCGTAAAGGCGGACTTGTGGCCTTGGGCGTGATGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020464_3

>merge|NZ_CP020464|3|1943080-1943231|CRISPRCasFinder
GAACGCGTTATGGGCGTAAAGGCGGACTTGTGGCCTTGGGCGTGATGGCCCGGGTCTGGCCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGGCGTAAAGACGGACTTGTGGCCTTGGGCGTGATGGCCC

>NZ_CP020464|3|3|1943080-1943231|CRISPRCasFinder
GAACGCGTTATGGGCGTAAAGGCGGACTTGTGGCCTTGGGCGTGATGGCCC	GGGTCTGGCCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGC
GAACGCGTTATGGGCGTAAAGACGGACTTGTGGCCTTGGGCGTGATGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020464.1\|WP_005684898.1\|1947768_1947990_-\|DUF2969-domain-containing-protein	unknown	unknown	gnl\|CDD\|371411
NZ_CP020464.1\|WP_081155077.1\|1944876_1946001_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP020464.1\|WP_005710382.1\|1938030_1939062_-\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273908
NZ_CP020464.1\|WP_005710388.1\|1941767_1942598_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP020464.1\|WP_005710380.1\|1936841_1938038_-\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746
NZ_CP020464.1\|WP_005689032.1\|1934979_1936416_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP020464.1\|WP_005713773.1\|1946441_1947647_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP020464.1\|WP_005713318.1\|1946130_1946430_-\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|133457
NZ_CP020464.1\|WP_005684879.1\|1934554_1934737_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020464.1\|WP_005684886.1\|1939054_1939822_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP020464.1\|WP_005710386.1\|1940696_1941749_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP020464.1\|WP_005684901.1\|1948479_1949469_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP020464.1\|WP_005713311.1\|1943547_1944375_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP020464.1\|WP_005710384.1\|1940002_1940692_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP020464.1\|WP_005713778.1\|1933839_1934220_-\|DUF1694-domain-containing-protein	unknown	unknown	gnl\|CDD\|377952
NZ_CP020464.1\|WP_005689008.1\|1949533_1949770_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP020464.1\|WP_005710379.1\|1936408_1936855_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_CP020464.1\|WP_005707670.1\|1947982_1948288_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|237697
NZ_CP020464.1\|WP_005684900.1\|1948296_1948467_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|378713
NZ_CP020464.1\|WP_020751913.1\|1949809_1949962_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020464.1\|WP_005684898.1\|1947768_1947990_-\|DUF2969-domain-containing-protein	gnl\|CDD\|371411	pfam11184, DUF2969, Protein of unknown function (DUF2969). This family of proteins with unknown function appears to be restricted to Lactobacillales.	2.86889e-19
NZ_CP020464.1\|WP_081155077.1\|1944876_1946001_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	2.43739e-160
NZ_CP020464.1\|WP_005710382.1\|1938030_1939062_-\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.12719e-66
NZ_CP020464.1\|WP_005710388.1\|1941767_1942598_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.46322e-100
NZ_CP020464.1\|WP_005710380.1\|1936841_1938038_-\|SufS-family-cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0
NZ_CP020464.1\|WP_005689032.1\|1934979_1936416_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP020464.1\|WP_005713773.1\|1946441_1947647_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.53442e-96
NZ_CP020464.1\|WP_005713318.1\|1946130_1946430_-\|glycine-cleavage-system-protein-H	gnl\|CDD\|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	1.11285e-30
NZ_CP020464.1\|WP_005684901.1\|1948479_1949469_-\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	0
NZ_CP020464.1\|WP_005684886.1\|1939054_1939822_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.55434e-132
NZ_CP020464.1\|WP_005710386.1\|1940696_1941749_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	4.77937e-172
NZ_CP020464.1\|WP_005713311.1\|1943547_1944375_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.36844e-98
NZ_CP020464.1\|WP_005710384.1\|1940002_1940692_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.83276e-86
NZ_CP020464.1\|WP_005713778.1\|1933839_1934220_-\|DUF1694-domain-containing-protein	gnl\|CDD\|377952	pfam07997, DUF1694, Protein of unknown function (DUF1694). This family contains many hypothetical proteins.	1.02355e-25
NZ_CP020464.1\|WP_005689008.1\|1949533_1949770_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.07653e-14
NZ_CP020464.1\|WP_005710379.1\|1936408_1936855_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.21602e-59
NZ_CP020464.1\|WP_005707670.1\|1947982_1948288_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|237697	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD.	5.61861e-47
NZ_CP020464.1\|WP_005684900.1\|1948296_1948467_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|378713	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta. This short 60-residue long bacterial family is the beta subunit of the DNA-directed RNA polymerase, likely to be EC:2.7.7.6. It is membrane-bound and is referred to by the name EpuA.	5.00157e-07

>NZ_CP020464.1|WP_005710388.1|1941767_1942598_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKFWKRAIITLALVLPVFVLAACGKSSSSSSKNETVKVGIMSTDKEIWTDIQSRLKKQGVTIKLVQFTDYNQPNQALEDGDIQLNAFQHHNFLNNWNKKHNTKIADIGDTYIGPMRAYSSKIKSLKEVKQGDQISLPNDPSNEGRALQLLAQNKLITLKKGVASPTIRDITSNKLNLKFTELDAAQTARSLNDVAVAVVNNDIAAAANLKPSNAIAVEKITSQSKPWVNFIAAKSSKDKNNATYKKIVKAYQTKRTAELLKKVYKGSTLPAWNYKF
>NZ_CP020464.1|WP_005710386.1|1940696_1941749_-|ATP-binding-cassette-domain-containing-protein
MSDQAVVTLKDVDVEFHGKNRSVHAVDHVSLTVNRGDIYGIVGYSGAGKSTLVRTINLLQRPTGGSIHVLGQDMLALSPAELRKERKRIGMIFQHFNLMNSRTIADNVAFPLKGIKSKQEIQKKVAELLDLVGLTDRANAYPAQLSGGQKQRVGIARALASDPEILISDEATSALDPKTTSSILELLQSLNKRLGLTIVLITHQMEAVKQICNRVAVMDAGAIIERGDLLQVFSDPKQQLTKDFIDTTLQLDQAIEAVMQQPAVKNLGANDRLLRLTYVGDSADKPLVAKLFESYHVTANILFGDIQILQDTPFGNLIVVLSGAQADVNAGIHYLEQQDVKIEDILKKEA
>NZ_CP020464.1|WP_005710384.1|1940002_1940692_-|ABC-transporter-permease
MAQFFTKYFPNVVPIWSGDGGVTQAINETLYMTALTAIVAGILGIVIGILLVLTDEGGLLANHPFYFILDKLVNIFRAVPFIILLAIMTPVTRAIVGTGIGPTAALVPLIAGTTPFYARQVQNALLTVDPGVIEAAEAMGVSPLGIVWRVYLREGLSELIRVSVLTIISVIGLTAMAGAVGGGGLGNLAIAVGYQRYQYDVIIVSLIFILALVFLVQFIGDFFARKSHH
>NZ_CP020464.1|WP_005684886.1|1939054_1939822_-|Fe-S-cluster-assembly-ATPase-SufC
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYEVTQGDILIDGQSILDLAVDERARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIRITDFLNQLDKTMATLEMPESMADRYLNQGFSGGEKKRNEILQLMMIHPHFGLLDEIDSGLDIDALRIVAKGVNLMRGPEFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKELEKTGYEHLKVGDQNG
>NZ_CP020464.1|WP_005710382.1|1938030_1939062_-|SufD-family-Fe-S-cluster-assembly-protein
MVETTTLPAPNLPKFSLARYLKNQPDAVEDRVILHAPQDIAYAAGSSEAQRFTPKTSLDAWLLQSPQGATTIDIPAHFVSGDDPIVLTGPKNAGGLLYVHVGKGANVTVQEKWASGGHVLGIWLMLVIEADAQVNWLSYDSFSADTVLVNRTATLADNAKLNWTLAGFSHNSGLNRVDVRLLGQNAEATVNVGVLASGSQHVSYTTSVTNEGQHTVGHINQRGVITGSAHLLFNGIGHIVKGARGSDAQQENRVLMLSPRAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGLSATLAKRLVIRGFLEGGLAEIDDQRLKKELFATIDRTLVAEDA
>NZ_CP020464.1|WP_005710380.1|1936841_1938038_-|SufS-family-cysteine-desulfurase
MREQFPFFKAHPGLVYLDTAATSQKPQALLDSLQNYYINENANVHRGLYKLAYDTTEAYEGVRQEVADFLGAQSADEIIFTRGTTDSLNLVASAFGPHAVPEGGRIVVSGAEHHSNFIPWQQLAKRQHAKFEVTPVHPDGVVDVPALLAAITPETNLVAIAQVTNVAGDTLPVAAIAKKAHAVGAVVVVDGAQAVAHLPVDVQTLGADFYAFSGHKIYGPTGIGVLYGRANLLAKMPPIQFGGEMISEVRDDVSTWAEGPIKYEAGTPNIAGVIGLGTALHWFKQNVDAAVLKTEHDLADQLRSGLAAIPDVTVYGNQASLATVSFNLAGIHPHDLATFLDEQQIAVRAGHHCAQPLMARLGVPATVRASFGVYNNADDVAKLVEAVQAARRYFHGVD
>NZ_CP020464.1|WP_005710379.1|1936408_1936855_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALTKLDQMYRAVILDEAQHPRHHGTLTDFDHEITVRNPSCGDVLRLQIREQAGRVEDVAFSGSGCTISQASASLMTEQILGKTPAEIEQMVETFSDLIINGSVPDAEILGDAAVLKGVHQFPARIKCATLAWKAAAQVLTQRGETDD
>NZ_CP020464.1|WP_005689032.1|1934979_1936416_-|Fe-S-cluster-assembly-protein-SufB
MTETKNTKNNEVVAADIDFLPDENPADFKDDIKPVYSTGRGLTEDTVRAISAEKHEPDWMLAYRLKAYATYRKLAMPNFGPDLSDLDLDNMLYFQKATDRTYRDWEDVPDTIKKTFDRLGVPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDSALKEYPELVHEYFGKLVKPSDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNYVEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSVYLDGKGAHGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNSTVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG
>NZ_CP020464.1|WP_005684879.1|1934554_1934737_-|hypothetical-protein
MDNYDKARKVLQSMALSKIAQETGISIGQIWHYRDRYEGIQKAPPAYVERIASLYRKKRV
>NZ_CP020464.1|WP_005713778.1|1933839_1934220_-|DUF1694-domain-containing-protein
MAEDLEHFIKTMALGIPTIKPDEKRAFLGNFRERVAMAVTIRQLRDARITAMLDSVLKRYPGYRIFLNGRMGESLVNQYMMQALAHQYPFTIMNQPGMRVTKRVLPTDFGWVLAHPTQKISRPILL
>NZ_CP020464.1|WP_005713311.1|1943547_1944375_-|ABC-transporter-substrate-binding-protein
MKRIWKIFATVVLLGLILVGCGKSGSQASSQKQTTVKIGVVGADNRVLKAVAKKVKKQGINIKIVQFSDYNQPNTALKDHDIDLNLFQHQYFLNNWNKTHNADLVSIGQTIIAPLAIYSKKITKISQIKQGDTIALPNDPTNEGRALQLLQTAGLIKLNKKVALPTTRDVTTNKLNLKLKAVDAAQTASSLPDVAASVVNSGVAQDAKLNPKKAVFTEKVNKQSQPWINVFVANKKDKNNATYKKIVKAFRTKDIADLIEKLYHGSEVPAWTQKF
>NZ_CP020464.1|WP_081155077.1|1944876_1946001_+|ArgE/DapE-family-deacylase
MTNPIAFLQKLIQIDSANGNELAVARVLQAELEAADIPTKLIPYKDDRVNLVAQLNHGDRVLGFTGHEDVVSPGDENAWTYPPFSGKIVNNTMYGRGTDDMKSGLAAMTLALIHLKQSGFAHPIRFMATVGEEFGAMGARQLTEQGYADDLAGLVVGEPTNKLLKYAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGLVAFATREPHAFDQAPDDPDLGPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKLVDQANKATAANLTLNVLHRFLPVHSDKNGHLVTTANEAIAAVTGKPAELAVAFGGTDASEFIRSDNQFDVIVYGPGDNHFSHQIDEHVDLDSYTTAIKTYEEIAKRFFA
>NZ_CP020464.1|WP_005713318.1|1946130_1946430_-|glycine-cleavage-system-protein-H
MATTYFWQDELAAGQVRLGLTQEAQEALGKIKFVDLPEIGTSLTVGKSFLSVEAEKAVLDLEAPLAGTVVDVHRELSDKPALLDETDHNDNWVVTVSTK
>NZ_CP020464.1|WP_005713773.1|1946441_1947647_-|rod-shape-determining-protein-RodA
MESHEIKSNSEGDRIDYGIILSVMLLALIGLVSIYLATAHDTTTLQNPVRATIMQAAWYVIGGIGIFFVMRFDAEQLWRIAPYLYGIGIFLMIAVLIFYDKTTAINTGAKSWFALGPVSFQPSEIMKPAYILMLSRVVTQHNAAFSHTIQHDWQLIGRMVLWTLPIAVLMKLQNDFGTTLVFLAIFAGVTLVAGINWRILLPIALIGAAIGTLAILLVTQSWGRSFLGSIGFKTYQFARIDSWLNPSGSTSGDSYQLWQSMKAIGSGQLTGKGAFHIAVAVPVRESDMIFSVIGEAFGFIGAAVLILLYFMLIYQMIRVTFDTKNEFYAYISTGVIMMILFHVFENIGMNIGLLPLTGIPLPFISQGGSFLLANMLSVGMVLSMRYHHTSYMFSRDTEDFE
>NZ_CP020464.1|WP_005684898.1|1947768_1947990_-|DUF2969-domain-containing-protein
MAKEKNIKVAQMDETRNGHTVSVLRIGDQEIGFIEPDGTRFAAYVAGSNKPNRFKNIDDAVNALIAEYHLHQG
>NZ_CP020464.1|WP_005707670.1|1947982_1948288_-|membrane-protein-insertion-efficiency-factor-YidD
MKQILTWLVRGYQRFISPLFPPSCRYYPTCSTYMIQALQRHGAVKGLLMGIARILRCNPFVKGGLDPVPAYFTLRRNPHPENDLDLSDIQNLNRKLGGHHG
>NZ_CP020464.1|WP_005684900.1|1948296_1948467_-|DNA-directed-RNA-polymerase-subunit-beta
MDSQYPKRVFHHVKIWLIIALIALILGLLIGFGMGGDNPFKVFLPSTWIHFFNFLR
>NZ_CP020464.1|WP_005684901.1|1948479_1949469_-|rod-shape-determining-protein
MAKDIGIDLGTANVLINVKGKGIVLNEPSVVAIDTHTGKVLAVGTEAYKMVGRTPGNIRSIRPLKDGVIADFDITEAMLEYFINKLNVKGVFSKPNILICAPTNITDIEQKAIIQAAEKSGGRHVYLEFEPKVAAVGAGLDIFQPQGNMVIDIGGGTSDIAVLSLGEIVTSRSLRLAGDKMDASIAAYVKNKHKLIIGEHTAEQIKIKIGAVYDADPKETIEVRGRDIATGLPREVSVTSAEVSDALHETMMAIIDGAKGVLEKTPPELSADIIDRGIMLTGGGALLKGISQLFADELKVPVLLADDPLDAVALGTGVLLDNIEHHRQY
>NZ_CP020464.1|WP_005689008.1|1949533_1949770_-|DUF1146-domain-containing-protein
MFQEIGLNAAITLVSHFVFIMLAFRALNALRFEQFIKANHVREAQVLLLFMAVGLGYLVSSFFLSLVQAALNLPKLFL
>NZ_CP020464.1|WP_020751913.1|1949809_1949962_-|hypothetical-protein
MFWFMPITRSPAQKPAHKDLGRNGQARAITPKAAYAPVSNRAGSRSLRLA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020464_3	3.1\|1943131\|50\|NZ_CP020464\|CRISPRCasFinder	1943131-1943180	50	NZ_CP020464.1	1823525-1823574	2	0.96

1. spacer 3.1|1943131|50|NZ_CP020464|CRISPRCasFinder matches to position: 1823525-1823574, mismatch: 2, identity: 0.96

gggtctggccattgcgaccaaggtccttatgtgcaggtttctgggctggc	CRISPR spacer
gggtttggccattgcgtccaaggtccttatgtgcaggtttctgggctggc	Protospacer
****.*********** *********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020464_1	1.7\|905756\|30\|NZ_CP020464\|PILER-CR,CRISPRCasFinder,CRT	905756-905785	30	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	4520-4549	7	0.767
NZ_CP020464_1	1.9\|905888\|30\|NZ_CP020464\|PILER-CR,CRISPRCasFinder,CRT	905888-905917	30	GU580940	Rhodococcus phage ReqiDocB7, complete genome	26017-26046	7	0.767
NZ_CP020464_1	1.14\|906218\|30\|NZ_CP020464\|PILER-CR,CRISPRCasFinder,CRT	906218-906247	30	NZ_AP014822	Geminocystis sp. NIES-3709 plasmid pGM3709_01, complete sequence	12472-12501	7	0.767
NZ_CP020464_1	1.13\|906152\|30\|NZ_CP020464\|PILER-CR,CRISPRCasFinder,CRT	906152-906181	30	CP016197	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-3, complete sequence	52126-52155	8	0.733
NZ_CP020464_1	1.16\|906350\|30\|NZ_CP020464\|CRISPRCasFinder,CRT	906350-906379	30	MH940212	Salmonella phage PS5, complete genome	87981-88010	10	0.667
NZ_CP020464_1	1.16\|906350\|30\|NZ_CP020464\|CRISPRCasFinder,CRT	906350-906379	30	NC_022772	Salmonella phage Marshall, complete genome	43523-43552	10	0.667
NZ_CP020464_1	1.16\|906350\|30\|NZ_CP020464\|CRISPRCasFinder,CRT	906350-906379	30	MH688040	Salmonella phage Mooltan, complete genome	43621-43650	10	0.667
NZ_CP020464_1	1.16\|906350\|30\|NZ_CP020464\|CRISPRCasFinder,CRT	906350-906379	30	KF669654	Salmonella phage Maynard, complete genome	41777-41806	10	0.667
NZ_CP020464_1	1.16\|906350\|30\|NZ_CP020464\|CRISPRCasFinder,CRT	906350-906379	30	MN066127	Salmonella phage Matapan, complete genome	43609-43638	10	0.667

1. spacer 1.7|905756|30|NZ_CP020464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gacaacagactccgtcaacatcagtcttaa	CRISPR spacer
caaagcctactccgtcaacctcagtcttag	Protospacer
 * *.*  *********** *********.

2. spacer 1.9|905888|30|NZ_CP020464|PILER-CR,CRISPRCasFinder,CRT matches to GU580940 (Rhodococcus phage ReqiDocB7, complete genome) position: , mismatch: 7, identity: 0.767

agttgattgaggcgcggatgtacattcctg	CRISPR spacer
agttgatcgaggcgcggatgttcgactccg	Protospacer
*******.************* *. ..*.*

3. spacer 1.14|906218|30|NZ_CP020464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014822 (Geminocystis sp. NIES-3709 plasmid pGM3709_01, complete sequence) position: , mismatch: 7, identity: 0.767

aagcaacatatcaatcaagccgaaaaaaag	CRISPR spacer
aaataacttatcaatcaagcctaaaaacta	Protospacer
**..*** ************* *****  .

4. spacer 1.13|906152|30|NZ_CP020464|PILER-CR,CRISPRCasFinder,CRT matches to CP016197 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-3, complete sequence) position: , mismatch: 8, identity: 0.733

gcggcatcttcaaaatcaaaacgacgcgca	CRISPR spacer
caatcatcatcaaaatcaaaacgacacata	Protospacer
  . **** ****************.*..*

5. spacer 1.16|906350|30|NZ_CP020464|CRISPRCasFinder,CRT matches to MH940212 (Salmonella phage PS5, complete genome) position: , mismatch: 10, identity: 0.667

actcgggtattgacaaagatcgacgcggca	CRISPR spacer
actcgggtattgacaaaggtcttttgaatt	Protospacer
******************.**  .  ...

6. spacer 1.16|906350|30|NZ_CP020464|CRISPRCasFinder,CRT matches to NC_022772 (Salmonella phage Marshall, complete genome) position: , mismatch: 10, identity: 0.667

actcgggtattgacaaagatcgacgcggca	CRISPR spacer
actcgggtattgacaaaggtcttttgaatt	Protospacer
******************.**  .  ...

7. spacer 1.16|906350|30|NZ_CP020464|CRISPRCasFinder,CRT matches to MH688040 (Salmonella phage Mooltan, complete genome) position: , mismatch: 10, identity: 0.667

actcgggtattgacaaagatcgacgcggca	CRISPR spacer
actcgggtattgacaaaggtcttttgaatt	Protospacer
******************.**  .  ...

8. spacer 1.16|906350|30|NZ_CP020464|CRISPRCasFinder,CRT matches to KF669654 (Salmonella phage Maynard, complete genome) position: , mismatch: 10, identity: 0.667

actcgggtattgacaaagatcgacgcggca	CRISPR spacer
actcgggtattgacaaaggtcttttgaatt	Protospacer
******************.**  .  ...

9. spacer 1.16|906350|30|NZ_CP020464|CRISPRCasFinder,CRT matches to MN066127 (Salmonella phage Matapan, complete genome) position: , mismatch: 10, identity: 0.667

actcgggtattgacaaagatcgacgcggca	CRISPR spacer
actcgggtattgacaaaggtcttttgaatt	Protospacer
******************.**  .  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

683076 : 765540

Bacillus_phage(18.75%)

bacteriocin,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005714569.1\|683076_683418_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005692222.1\|683708_684041_+	hypothetical protein	NA	NA	NA	NA
WP_005711134.1\|684213_685641_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.0e-32	26.4
WP_005711133.1\|685695_686136_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_005711130.1\|686456_687263_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005711129.1\|687312_687498_+	hypothetical protein	NA	NA	NA	NA
WP_005711123.1\|687889_688075_+	hypothetical protein	NA	NA	NA	NA
WP_005711122.1\|688134_688320_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_005714566.1\|688787_688946_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_005714564.1\|689123_689423_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005711118.1\|689672_689918_+	hypothetical protein	NA	NA	NA	NA
WP_005711112.1\|690892_691153_+	hypothetical protein	NA	NA	NA	NA
WP_005711108.1\|692052_693348_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_005714562.1\|693527_693683_+	hypothetical protein	NA	NA	NA	NA
WP_005711104.1\|693977_696170_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	3.6e-37	25.3
WP_005711102.1\|696182_697562_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_005714559.1\|697680_698034_+	hypothetical protein	NA	NA	NA	NA
WP_005711099.1\|698213_699569_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_005714157.1\|699663_700200_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_123811849.1\|700151_701045_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.3e-37	33.7
WP_005709782.1\|701344_702427_-	aldo/keto reductase	NA	NA	NA	NA
WP_005709780.1\|702552_702843_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005709779.1\|702870_703647_-	hypothetical protein	NA	NA	NA	NA
WP_005709777.1\|703690_704476_-	hypothetical protein	NA	NA	NA	NA
WP_005687855.1\|704472_704805_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_005714556.1\|704935_705583_-	helix-turn-helix transcriptional regulator	B5LPU3	Bacillus_virus	3.4e-07	42.3
WP_005709771.1\|705874_706930_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_005709769.1\|707122_708322_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_005709767.1\|708326_709115_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005687861.1\|709291_709849_+	hypothetical protein	NA	NA	NA	NA
WP_179214911.1\|710123_713075_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_005714553.1\|713076_714432_+	hypothetical protein	NA	NA	NA	NA
WP_005709760.1\|714422_715976_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_005709757.1\|715982_716807_+	class C sortase	NA	NA	NA	NA
WP_005709755.1\|717331_718057_+	hypothetical protein	NA	NA	NA	NA
WP_005709753.1\|718053_718722_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-33	38.3
WP_005714551.1\|718732_719902_+	ABC transporter permease	NA	NA	NA	NA
WP_005714549.1\|720922_721465_+	hypothetical protein	NA	NA	NA	NA
WP_005709747.1\|722040_722226_+	hypothetical protein	NA	NA	NA	NA
WP_107711099.1\|722271_722421_+	hypothetical protein	NA	NA	NA	NA
WP_005709745.1\|722674_723511_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.6e-47	41.9
WP_005709743.1\|723591_724848_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.8e-109	55.6
WP_005714547.1\|724919_726152_-	MFS transporter	NA	NA	NA	NA
WP_005714546.1\|726842_727097_+	hypothetical protein	NA	NA	NA	NA
WP_005686086.1\|727296_727503_+	hypothetical protein	NA	NA	NA	NA
WP_005686089.1\|727692_727950_+	hypothetical protein	NA	NA	NA	NA
WP_005714545.1\|728149_729328_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005709732.1\|729455_730673_+	MFS transporter	NA	NA	NA	NA
WP_005709730.1\|730665_731409_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_005692303.1\|731436_732666_+	MFS transporter	NA	NA	NA	NA
WP_005709728.1\|732662_733853_+	phosphopentomutase	NA	NA	NA	NA
WP_005686092.1\|733980_734190_+	CsbD family protein	NA	NA	NA	NA
WP_032951926.1\|734352_734517_+	lactate dehydrogenase	NA	NA	NA	NA
WP_104216446.1\|734488_735469_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_005686095.1\|735714_735999_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_005714543.1\|736017_737136_-	low temperature requirement protein A	NA	NA	NA	NA
WP_005692313.1\|737293_737965_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_072137620.1\|738136_738724_+	CBS domain-containing protein	NA	NA	NA	NA
WP_081155014.1\|739023_741654_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	2.8e-84	38.5
WP_005709719.1\|741873_743928_-	KUP/HAK/KT family potassium transporter	A7K9V6	Acanthocystis_turfacea_chlorella_virus	1.6e-63	32.9
WP_005714541.1\|744079_744955_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.4e-11	25.5
WP_005709716.1\|744968_746165_-	hypothetical protein	NA	NA	NA	NA
WP_005709714.1\|746161_747262_-	ABC transporter	NA	NA	NA	NA
WP_081155016.1\|747478_748825_-	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	8.1e-72	38.2
WP_005709712.1\|748969_750289_-	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	4.0e-63	35.8
WP_005714520.1\|750463_751645_-\|transposase	transposase	C1KFS0	Lactobacillus_virus	3.3e-101	49.1
WP_005713617.1\|751679_752276_-\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	2.4e-68	60.6
WP_005714535.1\|752648_752939_-	N-acetyltransferase	NA	NA	NA	NA
WP_005713603.1\|753583_754123_+	dUTP diphosphatase	J9PV85	Bacillus_phage	1.5e-37	48.6
WP_005686111.1\|754142_755507_+	DNA repair protein RadA	NA	NA	NA	NA
WP_005686113.1\|755527_756643_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_005692335.1\|756734_757631_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_005692336.1\|757772_758678_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-33	39.5
WP_005692337.1\|758679_759438_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005714532.1\|759721_761038_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_005713599.1\|761536_763165_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005686116.1\|763296_763683_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_005713598.1\|763679_764696_+	hypothetical protein	NA	NA	NA	NA
WP_005713596.1\|764709_765540_+\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

2199771 : 2278156

Lactobacillus_phage(90.74%)

transposase,protease,integrase,capsid,tail,tRNA,holin,portal,terminase,head

attL 2235557:2235616|attR 2298517:2298592

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005687266.1\|2199771_2200281_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_005687265.1\|2200867_2201710_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_005713283.1\|2201775_2202723_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_005713651.1\|2202906_2203896_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	1.1e-137	71.6
WP_003564153.1\|2204010_2204280_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_005688651.1\|2204329_2204704_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_005713281.1\|2204947_2205988_+	lactonase family protein	NA	NA	NA	NA
WP_005713280.1\|2206192_2207011_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_005713279.1\|2207030_2207669_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005713278.1\|2207884_2208943_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_005713277.1\|2209086_2209989_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_005687253.1\|2209988_2210786_-	NAD kinase	NA	NA	NA	NA
WP_005713649.1\|2210787_2211465_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_005713275.1\|2211631_2212225_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_005687248.1\|2212294_2212930_+	DsbA family protein	NA	NA	NA	NA
WP_005713647.1\|2213170_2214238_-	competence protein	NA	NA	NA	NA
WP_081155084.1\|2214404_2215748_-	PFL family protein	NA	NA	NA	NA
WP_005687240.1\|2215898_2216165_-	ACT domain-containing protein	NA	NA	NA	NA
WP_005713267.1\|2216379_2217708_+	metallophosphoesterase	NA	NA	NA	NA
WP_005713644.1\|2217834_2219043_-	putative C-S lyase	NA	NA	NA	NA
WP_005688627.1\|2219149_2219623_-	glutathione peroxidase	NA	NA	NA	NA
WP_005713643.1\|2220018_2220519_+	NUDIX hydrolase	NA	NA	NA	NA
WP_005713261.1\|2220515_2221346_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_005688621.1\|2221478_2221694_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_005713259.1\|2221779_2222490_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_005713257.1\|2222494_2224138_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_005713254.1\|2224726_2227138_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.1
WP_020751877.1\|2227558_2228230_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005713248.1\|2228294_2229020_-	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_005687221.1\|2229016_2230495_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_081155085.1\|2230716_2231187_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_005713241.1\|2231363_2232857_-	MFS transporter	NA	NA	NA	NA
WP_005713641.1\|2233387_2234572_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-141	66.0
WP_005713236.1\|2234750_2235404_+	hypothetical protein	NA	NA	NA	NA
2235557:2235616	attL	NA	NA	NA	NA
WP_005709578.1\|2235819_2237277_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_005711084.1\|2237898_2238123_-	hypothetical protein	A0A0P0IUZ5	Lactobacillus_phage	6.1e-33	98.6
WP_005711086.1\|2238167_2239466_-	LysM peptidoglycan-binding domain-containing protein	B4XYQ9	Lactobacillus_phage	1.0e-212	86.8
WP_005714728.1\|2239476_2239890_-\|holin	phage holin	A0A0P0IDC6	Lactobacillus_phage	2.4e-43	94.8
WP_003581984.1\|2239904_2240180_-	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	7.5e-49	100.0
WP_005688592.1\|2240235_2240379_-	XkdX family protein	A8YQK3	Lactobacillus_phage	3.5e-18	97.9
WP_005711092.1\|2240375_2240705_-	hypothetical protein	A8YQK2	Lactobacillus_phage	4.2e-54	99.1
WP_044434646.1\|2240720_2243675_-\|tail	phage tail protein	A8YQK1	Lactobacillus_phage	0.0e+00	77.5
WP_044434643.1\|2243675_2245592_-\|tail	phage tail family protein	Q3L0S3	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	4.2e-223	63.7
WP_005712773.1\|2245592_2250455_-\|tail	phage tail tape measure protein	U5U708	Lactobacillus_phage	0.0e+00	93.0
WP_003661382.1\|2250577_2250991_-	hypothetical protein	A0A2D1GPL7	Lactobacillus_phage	6.4e-52	100.0
WP_005712772.1\|2251089_2251707_-\|tail	phage major tail protein, phi13 family	U5U3Z7	Lactobacillus_phage	2.0e-110	97.6
WP_005712770.1\|2251740_2252127_-	hypothetical protein	U5U3W4	Lactobacillus_phage	1.6e-68	96.1
WP_005712768.1\|2252126_2252513_-	HK97 gp10 family phage protein	B4XYP9	Lactobacillus_phage	5.0e-67	98.4
WP_005712766.1\|2252512_2252842_-\|head,tail	head-tail adaptor protein	B4XYP8	Lactobacillus_phage	1.5e-56	97.2
WP_003564855.1\|2252831_2253191_-\|head,tail	phage gp6-like head-tail connector protein	U5U4K5	Lactobacillus_phage	1.6e-59	97.5
WP_005712764.1\|2253201_2253441_-	Ig-like domain-containing protein	A0A2D1GPN4	Lactobacillus_phage	1.6e-31	97.5
WP_005712762.1\|2253458_2254661_-\|capsid	phage major capsid protein	A0A2D1GPG3	Lactobacillus_phage	5.4e-208	94.2
WP_005714756.1\|2254702_2255332_-\|head,protease	HK97 family phage prohead protease	B4XYP5	Lactobacillus_phage	1.0e-109	94.3
WP_005712758.1\|2255285_2256539_-\|portal	phage portal protein	B4XYP4	Lactobacillus_phage	5.2e-222	91.8
WP_003661399.1\|2256544_2256736_-	hypothetical protein	A0A2D1GPE7	Lactobacillus_phage	3.0e-28	100.0
WP_081155087.1\|2256747_2258460_-\|terminase	terminase large subunit	B4XYP2	Lactobacillus_phage	0.0e+00	97.2
WP_005712753.1\|2258481_2258937_-\|terminase	P27 family phage terminase small subunit	B4XYP1	Lactobacillus_phage	1.0e-79	99.3
WP_179214909.1\|2259137_2259890_-	HNH endonuclease	B4XYU4	Lactobacillus_phage	2.3e-140	98.4
WP_005712746.1\|2260134_2260458_-	hypothetical protein	A0A0P0IJY9	Lactobacillus_phage	3.9e-49	87.5
WP_005712745.1\|2260461_2260992_-	HNH endonuclease	U5U4N5	Lactobacillus_phage	5.8e-98	96.6
WP_005712743.1\|2260978_2262196_-	GcrA cell cycle regulator	A8YQN3	Lactobacillus_phage	2.5e-237	97.5
WP_005712739.1\|2263075_2264149_-	hypothetical protein	NA	NA	NA	NA
WP_005714759.1\|2264542_2264986_-	autolysin regulatory protein arpU	A0A0P0IZI6	Lactobacillus_phage	4.0e-76	95.2
WP_005712735.1\|2265055_2265277_-	hypothetical protein	A0A0P0IXA5	Lactobacillus_phage	4.6e-09	51.4
WP_005712733.1\|2265404_2265614_-	hypothetical protein	D6PSV2	Lactobacillus_phage	1.6e-30	95.7
WP_005712732.1\|2265610_2265991_-	hypothetical protein	Q8LTB5	Lactobacillus_phage	1.5e-47	71.1
WP_005712731.1\|2265980_2266157_-	hypothetical protein	NA	NA	NA	NA
WP_005712730.1\|2266146_2266689_-	DUF1642 domain-containing protein	Q6J1U8	Lactobacillus_phage	3.1e-30	46.2
WP_005712729.1\|2266685_2266868_-	hypothetical protein	A8YQM8	Lactobacillus_phage	2.9e-25	91.7
WP_005714760.1\|2266864_2267566_-	N-6 DNA methylase	A8YQM7	Lactobacillus_phage	1.4e-123	94.8
WP_005714761.1\|2267577_2267913_-	hypothetical protein	U5U3Z2	Lactobacillus_phage	2.2e-34	97.3
WP_003607027.1\|2267926_2268292_-	endodeoxyribonuclease	A0A0P0HRU0	Lactobacillus_phage	1.8e-66	100.0
WP_005712725.1\|2268288_2268543_-	hypothetical protein	U5U728	Lactobacillus_phage	3.3e-35	91.7
WP_005712723.1\|2268529_2268874_-	hypothetical protein	B4XYS8	Lactobacillus_phage	3.6e-48	91.6
WP_005712721.1\|2268870_2269653_-	ATP-binding protein	Q6J1V5	Lactobacillus_phage	7.7e-131	92.3
WP_005712719.1\|2269639_2270437_-	hypothetical protein	Q6J1V6	Lactobacillus_phage	1.2e-91	70.2
WP_005712717.1\|2270451_2271009_-	DUF669 domain-containing protein	B4XYS5	Lactobacillus_phage	3.8e-100	94.1
WP_005712715.1\|2271012_2271720_-	AAA family ATPase	Q6J1V8	Lactobacillus_phage	5.9e-130	97.0
WP_005712713.1\|2271720_2272206_-	siphovirus Gp157 family protein	B4XYS3	Lactobacillus_phage	2.2e-80	97.5
WP_005712711.1\|2272224_2272428_-	hypothetical protein	Q6J1W0	Lactobacillus_phage	2.7e-27	89.6
WP_005712709.1\|2272432_2272585_-	hypothetical protein	A0A0P0HRK6	Lactobacillus_phage	2.4e-20	100.0
WP_005712707.1\|2272669_2273026_-	DUF771 domain-containing protein	B4XYS0	Lactobacillus_phage	1.1e-63	100.0
WP_003564805.1\|2273100_2273301_+	hypothetical protein	NA	NA	NA	NA
WP_005712705.1\|2273297_2273447_-	hypothetical protein	NA	NA	NA	NA
WP_005714763.1\|2273443_2273695_-	helix-turn-helix transcriptional regulator	A0A0P0IX93	Lactobacillus_phage	4.2e-30	98.6
WP_005712701.1\|2273852_2274626_+	helix-turn-helix transcriptional regulator	Q6J1W4	Lactobacillus_phage	4.0e-132	93.8
WP_005712700.1\|2274697_2274916_+	S24 family peptidase	NA	NA	NA	NA
WP_005714764.1\|2275006_2276188_+	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	2.0e-18	25.5
WP_005714766.1\|2276297_2276519_-	hypothetical protein	U5U783	Lactobacillus_phage	1.1e-21	69.0
WP_005712694.1\|2276657_2276921_+	hypothetical protein	B4XYT0	Lactobacillus_phage	1.9e-09	41.3
WP_005714768.1\|2277028_2278156_+\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	9.8e-212	98.4
2298517:2298592	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020464

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection