CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018100	Bacillus safensis strain BRM1, complete genome	3 crisprs	WYL,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh,csa3,DinG,cas3	0	4	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018100_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018100_1

830834-831393

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTANATGAGTGCGTGGATTGAAAT	CRT

8 spacers

PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

The CRISPR arrays of NZ_CP018100_1

>merge|NZ_CP018100|1|830834-831393|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAATATCAATAGCTTTGCAGTATCAGTTTTTTGAATGTCGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCTGTCTCAGCTGTTTGTCCTGGCATAAAGAAGTCGCACTCTATATGAGTTCGTGGATTGAAATAGGTTCAGGGATGGTCTGATCCGCCGTCTTAGCGGTCGCACTCTATATGAGTGCATGGATTGAAATCTGAAGATGACACCGGAAACTTTGGTGTAGCATGTCGCACTCTACATGAGTGCGTGGATTGAAATTGTTTTAAATTTTCACCTCCGTTATGGAATCATCGGTCGCACTCTACATGAGTGCGTAAATTGAAATTCCCATTTTTAATAAAGTGAACAACTTATTATAGTCGCACTCTACATGAGTGAGTGGATTGAAATTCAATGACTGAATAGATAATCGGGTTGTTTTCGTTGTCGCACTCTATATGAGTGCGTGGATTGAAATTTGAAATCTAGAATGTATTTTTCCATGATCATTTGTCGCACTCTACATGAGTGCGCGATTTTAAAT

>NZ_CP018100|1|1|830834-831327|PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ATCAATAGCTTTGCAGTATCAGTTTTTTGAATGTC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTGTCTCAGCTGTTTGTCCTGGCATAAAGAA
GTCGCACTCTATATGAGTTCGTGGATTGAAAT	AGGTTCAGGGATGGTCTGATCCGCCGTCTTAGCG
GTCGCACTCTATATGAGTGCATGGATTGAAAT	CTGAAGATGACACCGGAAACTTTGGTGTAGCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TGTTTTAAATTTTCACCTCCGTTATGGAATCATCG
GTCGCACTCTACATGAGTGCGTAAATTGAAAT	TCCCATTTTTAATAAAGTGAACAACTTATTATA
GTCGCACTCTACATGAGTGAGTGGATTGAAAT	TCAATGACTGAATAGATAATCGGGTTGTTTTCGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT

>NZ_CP018100|1|1|830834-831393|CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ATCAATAGCTTTGCAGTATCAGTTTTTTGAATGTC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTGTCTCAGCTGTTTGTCCTGGCATAAAGAA
GTCGCACTCTATATGAGTTCGTGGATTGAAAT	AGGTTCAGGGATGGTCTGATCCGCCGTCTTAGCG
GTCGCACTCTATATGAGTGCATGGATTGAAAT	CTGAAGATGACACCGGAAACTTTGGTGTAGCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TGTTTTAAATTTTCACCTCCGTTATGGAATCATCG
GTCGCACTCTACATGAGTGCGTAAATTGAAAT	TCCCATTTTTAATAAAGTGAACAACTTATTATA
GTCGCACTCTACATGAGTGAGTGGATTGAAAT	TCAATGACTGAATAGATAATCGGGTTGTTTTCGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTGAAATCTAGAATGTATTTTTCCATGATCATTT
GTCGCACTCTACATGAGTGCGCGATTTTAAAT

>NZ_CP018100|1|1|830834-831393|CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ATCAATAGCTTTGCAGTATCAGTTTTTTGAATGTC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTGTCTCAGCTGTTTGTCCTGGCATAAAGAA
GTCGCACTCTATATGAGTTCGTGGATTGAAAT	AGGTTCAGGGATGGTCTGATCCGCCGTCTTAGCG
GTCGCACTCTATATGAGTGCATGGATTGAAAT	CTGAAGATGACACCGGAAACTTTGGTGTAGCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TGTTTTAAATTTTCACCTCCGTTATGGAATCATCG
GTCGCACTCTACATGAGTGCGTAAATTGAAAT	TCCCATTTTTAATAAAGTGAACAACTTATTATA
GTCGCACTCTACATGAGTGAGTGGATTGAAAT	TCAATGACTGAATAGATAATCGGGTTGTTTTCGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTGAAATCTAGAATGTATTTTTCCATGATCATTT
GTCGCACTCTACATGAGTGCGCGATTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018100.1\|WP_081124119.1\|823622_824606_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP018100.1\|WP_003217808.1\|842273_842498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP018100.1\|WP_081124121.1\|827342_827894_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP018100.1\|WP_003217849.1\|822783_822933_-\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP018100.1\|WP_041106363.1\|828291_829455_-\|oxalate-decarboxylase-family-bicupin	unknown	unknown	gnl\|CDD\|274565
NZ_CP018100.1\|WP_081124122.1\|827802_828222_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372952
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP018100.1\|WP_024425219.1\|823049_823322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP018100.1\|WP_081124120.1\|824693_827288_+\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP018100.1\|WP_081124125.1\|831633_832524_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018100.1\|WP_081124119.1\|823622_824606_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.15881e-82
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.68536e-150
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	7.34179e-25
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.19719e-51
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.29348e-16
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.21436e-10
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.11589e-43
NZ_CP018100.1\|WP_081124121.1\|827342_827894_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	2.92028e-08
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.65184e-63
NZ_CP018100.1\|WP_003217849.1\|822783_822933_-\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	4.39954e-17
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.67567e-80
NZ_CP018100.1\|WP_041106363.1\|828291_829455_-\|oxalate-decarboxylase-family-bicupin	gnl\|CDD\|274565	TIGR03404, Oxalate_decarboxylase_OxdC, bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.	0
NZ_CP018100.1\|WP_081124122.1\|827802_828222_-\|hypothetical-protein	gnl\|CDD\|372952	pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents expression and activity of the YrvI sigma factor. It may function as an anti-sigma factor.	1.57375e-21
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	5.43062e-65
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11
NZ_CP018100.1\|WP_024425219.1\|823049_823322_+\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	2.03283e-41
NZ_CP018100.1\|WP_081124120.1\|824693_827288_+\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.137e-54

>NZ_CP018100.1|WP_073204404.1|830430_830652_+|hypothetical-protein
MSVQEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP018100.1|WP_081124123.1|829880_830483_+|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLQQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKVYQQLTDKQKMVLTQIYVEGQTMKEIADQLGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP018100.1|WP_073204399.1|829549_829714_-|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD
>NZ_CP018100.1|WP_041106363.1|828291_829455_-|oxalate-decarboxylase-family-bicupin
MSEKQNGIPQPIRGEKGATVKIPRNLERDRQNPDMLTPPETDHGTVSNMKYSFSDTHNRLEKGGYAREVTVRELPISKSLASVNMRLKPGAIRELHWHKEAEWAYMIYGEARITSVDAEGRNFTEDVTEGDLWYFPSGLPHSIQALEPGAEFLLVFDDGSFSENSTFQVTDWLAHTPEEVVLKNFGMTKEQFDKLPEKEKYIFQKGIPGSLECDKVKTEQGEVPNSFKYELLKQEPITSSGGQVWIADSTNFKASKTIASALVKVDPGAIRELHWHPNTDEWQYFISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENTGDEPLYFLEIFKSDHYADISLNQWLAVTPKQLVLDHLDQGEDFLKLLDTEKHPVIAAPKKED
>NZ_CP018100.1|WP_081124122.1|827802_828222_-|hypothetical-protein
MQQSVHALWQGLKWLMAASAVCYIFLLFCVLFFHLTGAFYQSILSMLLFMGIYVVLGISFEHVEHVLMRVVKKCRSKKRSIVFYAISIHLLFIWGAVYLSDELVGGILLSTSEEILFALSIWLFHFLFDYATFSFEKEA
>NZ_CP018100.1|WP_081124121.1|827342_827894_+|DinB-family-protein
MGENHLTLNKESIIDYYEHSIEWVQSLTELTDKEWRRAIADGKWSTAEIIAHFVPWDEFILNDRLKEFWNDQPLPQAPDVHKMNQQSAERARKEKKSETIGRFIAVRTELLQEMKKIEPSRWNELFFIGQTKLTLLRYFQGLNEHDIHHMKQVTKLLSQTKTSHNQTKNETTKCLGQRGFPQK
>NZ_CP018100.1|WP_081124120.1|824693_827288_+|YfhO-family-protein
MMKRRWIMIGMCLILALLGHSFFLYEYTQGRYMTGDGDGISQMLPFKKLLYDEYVKGNFFYSYQFGLGGGTYTQLGYYFTTSTVFMVTVAVVWLMNALHLIQSTDIHFWANAVIWLSVIKLTLILFIAYRVLLSMVQHRLSALTGAAIYGLSIVYFRHQTFWEFFTDSMMWLPLLVLGVERIFKTGKPAWFIAACSLMLINNFYFAYIHFIFLAIYLVFRYIIKLRSEENGWKVFWTLAVSTLLSFGISAAFFVPSVYGFLNNIRPPYDQSIPWFDLHDHLLFTSRVYLLPVIFLICMFLVPLYRNRWFFMFTSISVLLIVFHYSPKMASVFNGFSAPQYRFEYILAFTVGAVAAITIKHFSQIEWKWKKRAVLGAWIVFLLAVILSERAKGNMDVVVFTGIGLLVISLFFLLIHAEKRQHLRLFSAVLIVVSLLTAGVYQQGYLSERSNIKSVSDTYLNSEAYAGHEQMKLIQQIQSRSSKDPLARIDWMNGVRNNTPLFEGFQGMSAYSSILNQHLLNFYWNDLQIDMGRESVSRYATMGDRANLYSLTYGKYYMRTSAMPYSPPAYFKPILESEHYKVYENTRPLPFARTTSTVYSEESLKDASALDREHAMLQGVVLDKKGNAEIEHAPDRVKDTNIHTIQAIYEHGVLDVYGETGGLNITLPDDMARAGDVYVSFYVKRTDRNEGFQLSVDHYVTSRKSNTSIYKTGVNEVTIRVPAEKILSIRVPKGTYELSQLKLYQEPYRVLEKAYEKEKKDHGSQQVQLENNRFTISYDNKRGDNYMILPVPYEKGWELTVNGKQTDIEQANYAFIGFPIDKGKNEIVLTYYPPYIRILALISLVSLIGAILYARRQHKKHHFTS
>NZ_CP018100.1|WP_081124119.1|823622_824606_+|glycosyltransferase-family-2-protein
MERELLSVIIPSYNEGENIRRIFEALEEEFRDFHYDFEIIFVNDGSKDNTLQYMRELSRKSAKVKYISFSRNFGKEAAILAGLEHAKGAAAIIMDADLQHPTYLIQDFVRGYEEGYHQVIAKRNRKGDSKLRSYLSSMYYKVMNKVVEVDLRDGVGDFRLISRQAIDALLQLKEGNRFSKGLFCWIGFEEKVIYYENVERQHGDTKWSLKKLFNYGIDGVISFNNRPLRICFYTGILILFLSLIYIVATFIQIVRTGVMVPGYFTLISAVLFLGGVQLLSLGVIGEYIGRIYYETKKRPHYLIQESNVMEQETSSKEQDRVLTQLFK
>NZ_CP018100.1|WP_024425219.1|823049_823322_+|hypothetical-protein
MEQYFERLTEQLMEKNNMLTYDEARTWVELLWSDFETTYAKAGRKYKGQETTERIVQEWIESYGAQLHLFQNKQSKANEHLQQNNRGLLH
>NZ_CP018100.1|WP_003217849.1|822783_822933_-|small,-acid-soluble-spore-protein-K
MRNKAKGFPNQVNHKFEGEPGATDAYASKRPNGETNTRPQERMRASGKR
>NZ_CP018100.1|WP_081124125.1|831633_832524_+|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAIFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNFDVDNLKVWSDNIKKLVPKTKGIARIAAKGVDMVENDTQKRTRPILILASNLKRQTANSSSKMFEILDKAFDLILIKQKSVFHLRAPNEDKQLGWWANELNCYDPERSKEQEDKEKKKNSEKNKDNSKDKVISNKLSDLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP018100.1|WP_081124126.1|832539_833847_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTREFSKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDEDRPIRESAIRGHLRFWWRATRGAVCKNANELSKREAEIFGHTEQASQIQVVTHYEKDEVKRNSNVFFKKKNHPFPRYILSNMKDKTPYLMKAQFSLNIRISKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPASSREWPTLSREFKVQAFPSSMISSWRSVIQSYETFRRRSNPTKKMGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDKGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPQIEALSLLGKGKPLPDVTDEQSIYPTATYSKNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNYKNKH
>NZ_CP018100.1|WP_081124127.1|833816_835643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEELQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKAGAKKFQELGGTLIFPVFNESSAEPNNAELNNAPNKILGEISHEQPSSIARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVDDLLEFYAVWTEVQNQDKAANASASPYHLALQEVEGLMAARKTLRDFKQKEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAQWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLLKNEQMKKVATQYVRAVETYFENMNLTVAPIDLSEASLFYERRIEDYLEQRGFVGNTRTEAKNDITQLLQKYFKGEYSKHHGQPIKPPAPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKASEIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQSEFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTTWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTIAECMIIALQLEEVSGHA
>NZ_CP018100.1|WP_081124128.1|835635_836868_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MPERWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYAKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMNQVRPKPMMSEGRGFFGTGKTGRFSEALWPPIGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVETGSKKAKDQHLFSTESLLFPDDFKLEAGIELSTEESEELKPFSSLHPIGGERRLAHIEDRPHVYQQDWTCPDAIKESLKNKLYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP018100.1|WP_081124129.1|836860_837751_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDLIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAQKMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGEGS
>NZ_CP018100.1|WP_081124130.1|837747_838116_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLKLTITFFEAKSKKGNAYQQFVQDIKETLDLQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP018100.1|WP_081124131.1|838043_838889_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIDGSTLSNIIMDSSKKQSFYENVISLHRKQWGENRLLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGIPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALIMPETVGEAFKVDVMTPHHSDYNSVKLDKVNQGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEDAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDAIS
>NZ_CP018100.1|WP_046314324.1|840014_840995_-|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHIVAIVVWAIGGHPGYTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP018100.1|WP_081124132.1|841186_842287_+|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYGGIVPDTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSALEEGVQHELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETVKGRKTEKEQLIDFLKEEGGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTIEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP018100.1|WP_003217808.1|842273_842498_-|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD

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Crispr_ID: NZ_CP018100_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018100_2

839026-839388

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTACATGAGTGCGTGGATTGAA	CRISPRCasFinder

5 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK

The CRISPR arrays of NZ_CP018100_2

>merge|NZ_CP018100|2|839026-839388|CRISPRCasFinder
GTCGCACTCTACATGAGTGCGTGGATTGAAATCGAAACCATTTGTCTCTAAGTTTACAATGCCTGGCCGTCGCACTCTACATGAGTGCGTGGATTGAAATATGGTTGCGGTGCTTAAAAAAGTCCGTAAAACCCGTCGCACTCTATATGAGTGCGTGGATTGAAATTGCATTTGCGTCACTTGTAATGTGAGGAAAGCCAGTCGCACTCTATATGAGTGTGTAGATTGAAATAAGTCGTCAACTTTTACTTTTCCATCTGAAAACTGTCGCACTCTACATAAGTGCGTGGATTGAATTTTCTCAAGATACTTCATGGCGTGGTGAATATTGCGTCGCACTCTACATGAGTGCGTATATTAATA

>NZ_CP018100|2|2|839026-839388|CRISPRCasFinder
GTCGCACTCTACATGAGTGCGTGGATTGAA	ATCGAAACCATTTGTCTCTAAGTTTACAATGCCTGGCC
GTCGCACTCTACATGAGTGCGTGGATTGAA	ATATGGTTGCGGTGCTTAAAAAAGTCCGTAAAACCC
GTCGCACTCTATATGAGTGCGTGGATTGAA	ATTGCATTTGCGTCACTTGTAATGTGAGGAAAGCCA
GTCGCACTCTATATGAGTGTGTAGATTGAA	ATAAGTCGTCAACTTTTACTTTTCCATCTGAAAACT
GTCGCACTCTACATAAGTGCGTGGATTGAA	TTTTCTCAAGATACTTCATGGCGTGGTGAATATTGC
GTCGCACTCTACATGAGTGCGTATATTAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP018100.1\|WP_003217808.1\|842273_842498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018100.1\|WP_039177303.1\|843731_843992_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP018100.1\|WP_081124133.1\|843392_843557_+\|gamma-type-small-acid-soluble-spore-protein	unknown	unknown	unknown
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP018100.1\|WP_024425209.1\|844139_844670_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP018100.1\|WP_081124134.1\|844765_846508_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP018100.1\|WP_081124135.1\|846620_847643_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP018100.1\|WP_024425211.1\|842579_843332_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP018100.1\|WP_081124125.1\|831633_832524_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP018100.1\|WP_080708071.1\|847611_848589_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493

Protein	Function_ID	Function_description	E-value
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.19719e-51
NZ_CP018100.1\|WP_081124135.1\|846620_847643_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.47456e-173
NZ_CP018100.1\|WP_039177303.1\|843731_843992_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.62012e-16
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	5.43062e-65
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.29348e-16
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.21436e-10
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.68536e-150
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.65184e-63
NZ_CP018100.1\|WP_024425209.1\|844139_844670_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	3.46751e-129
NZ_CP018100.1\|WP_081124134.1\|844765_846508_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.67567e-80
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11
NZ_CP018100.1\|WP_024425211.1\|842579_843332_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.04693e-172
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.137e-54
NZ_CP018100.1\|WP_080708071.1\|847611_848589_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.51498e-131
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.11589e-43
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	7.34179e-25

>NZ_CP018100.1|WP_081124131.1|838043_838889_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIDGSTLSNIIMDSSKKQSFYENVISLHRKQWGENRLLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGIPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALIMPETVGEAFKVDVMTPHHSDYNSVKLDKVNQGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEDAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDAIS
>NZ_CP018100.1|WP_081124130.1|837747_838116_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLKLTITFFEAKSKKGNAYQQFVQDIKETLDLQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP018100.1|WP_081124129.1|836860_837751_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDLIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAQKMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGEGS
>NZ_CP018100.1|WP_081124128.1|835635_836868_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MPERWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYAKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMNQVRPKPMMSEGRGFFGTGKTGRFSEALWPPIGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVETGSKKAKDQHLFSTESLLFPDDFKLEAGIELSTEESEELKPFSSLHPIGGERRLAHIEDRPHVYQQDWTCPDAIKESLKNKLYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP018100.1|WP_081124127.1|833816_835643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEELQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKAGAKKFQELGGTLIFPVFNESSAEPNNAELNNAPNKILGEISHEQPSSIARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVDDLLEFYAVWTEVQNQDKAANASASPYHLALQEVEGLMAARKTLRDFKQKEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAQWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLLKNEQMKKVATQYVRAVETYFENMNLTVAPIDLSEASLFYERRIEDYLEQRGFVGNTRTEAKNDITQLLQKYFKGEYSKHHGQPIKPPAPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKASEIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQSEFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTTWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTIAECMIIALQLEEVSGHA
>NZ_CP018100.1|WP_081124126.1|832539_833847_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTREFSKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDEDRPIRESAIRGHLRFWWRATRGAVCKNANELSKREAEIFGHTEQASQIQVVTHYEKDEVKRNSNVFFKKKNHPFPRYILSNMKDKTPYLMKAQFSLNIRISKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPASSREWPTLSREFKVQAFPSSMISSWRSVIQSYETFRRRSNPTKKMGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDKGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPQIEALSLLGKGKPLPDVTDEQSIYPTATYSKNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNYKNKH
>NZ_CP018100.1|WP_081124125.1|831633_832524_+|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAIFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNFDVDNLKVWSDNIKKLVPKTKGIARIAAKGVDMVENDTQKRTRPILILASNLKRQTANSSSKMFEILDKAFDLILIKQKSVFHLRAPNEDKQLGWWANELNCYDPERSKEQEDKEKKKNSEKNKDNSKDKVISNKLSDLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP018100.1|WP_073204404.1|830430_830652_+|hypothetical-protein
MSVQEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP018100.1|WP_081124123.1|829880_830483_+|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLQQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKVYQQLTDKQKMVLTQIYVEGQTMKEIADQLGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP018100.1|WP_073204399.1|829549_829714_-|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD
>NZ_CP018100.1|WP_046314324.1|840014_840995_-|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHIVAIVVWAIGGHPGYTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP018100.1|WP_081124132.1|841186_842287_+|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYGGIVPDTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSALEEGVQHELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETVKGRKTEKEQLIDFLKEEGGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTIEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP018100.1|WP_003217808.1|842273_842498_-|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD
>NZ_CP018100.1|WP_024425211.1|842579_843332_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MSQRKCALITGSSRGVGKEVALRLAEKGYDIVINYARSKKAALETAEEIEAMGVKTLVVKANVGQPEKIKDMFQQIDETFGRLDVFVNNAASGVQRPIMDLEENHWDWTMNINAKALLFCGQEAAKLMEKNGGGHIVSISSLGSIRYLENYTVVGVSKAALEALTRYLSVELSQKNIVVNAVSGGAIDTDALKHFPNREELLEDAKKNTPAGRMVEIKDMVDSVEFLVSGKADMIRGQTIIVDGGRSLLV
>NZ_CP018100.1|WP_081124133.1|843392_843557_+|gamma-type-small-acid-soluble-spore-protein
MDQQQNKTNAQQVKKQNQAAAQGGQFGTEFASETDVQQVKKYNQKAEQNKQQNS
>NZ_CP018100.1|WP_039177303.1|843731_843992_+|hypothetical-protein
MSDFDQLVKEQMQLMDQLLDVQGELDLCLETEKQLLQDEKKEEWHRLCDQIKQKREELQKVQTLFTKQTEEVINSYKQMEKSSSVM
>NZ_CP018100.1|WP_024425209.1|844139_844670_+|DUF402-domain-containing-protein
MGYPKEGETIQIQSYKHNGLIHRIWNETTILKATELCIIGANDRTMVTESDGRTWMTREPAICYFHAKQWFNVIGMLRDDGVYYYCNISSPFATDDEAIKYIDYDLDVKVFPDMTYNILDEDEYADHKRQMNYPKEIDSILREHLNTLLHWIHQRKGPFAPEFVDMWYERFLHYTK
>NZ_CP018100.1|WP_081124134.1|844765_846508_+|ABC-transporter-ATP-binding-protein
MGVIKRYMAFVTPYKKQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSGSAEEKTSTLLIIMGIMLVLFLVLRPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKEFVITGLMNIWLDMMTVLIVIAIMCTLDLKLTIVSVIIFPLYAFAVKYFYGRLRKLTKERSQALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNTITDIAPLLIIAFAGYTVINGSLSIGTMIAFVGYIDRMYNPIRRLINSSTTLTQSVASMDRIFEFIDEPYEVTDRPNAKEANHLKGEVEFKHVSFRYEHTQEEILHNISLKVEKGQTVALVGMSGGGKSTLVSLIPRFYDVTNGSLEIDGIDIKEYKARSLRNQVGMVLQDTFLFSDTIKENIAVGDPEAPFENIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADQIVVMEQGEIVEKGTHEELMNQDSHYRHLFTIQTLN
>NZ_CP018100.1|WP_081124135.1|846620_847643_+|ABC-transporter-ATP-binding-protein
MKEQDVLLDVKQLSIAFQHKKQKVPIVHHISFSIQKGETLGIVGESGCGKSITSMSLMGLNQQTDTTGEVHFEGQNLLSLSEKQWREIRGNDISMIFQEPMTSLNPLMTIGKQMTEALFTHQAIGQKEAKAKAIDLLQTVGLKQAESLLKKYPHELSGGMRQRVMIAMAMLCHPKLMIADEPTTALDVTIQAQILRLLKKLNEEMDTAILFITHDLGVVRQICQRVMIMYAGRIVEEGTVDRIFQKPLHPYTKGLFASVPSFKEKKEKLISIAGHVPKPWAIRSGCQFAPRCPYQMPQCLEKDPALQSIEQNHRVACFLMEGGEDTDSPTLASESADKTV
>NZ_CP018100.1|WP_080708071.1|847611_848589_+|ABC-transporter-ATP-binding-protein
MQVNQLTKRYDTAAFFSKHKQSTLALNQVSFHVKEGETLGIVGESGCGKSTLGKSLMRLTEPTSGSIQLKGQEITLLKERDMRSLRKDIQMIFQDPYASLNPRMKIKDILEEPLIVHQHGTKAERRKRVKEMLHIVGFDPSYGERYAHQFSGGQRQRIGIARALITHPSLVIADEPVSALDVSVQAQILNLMLELQKTLSLTYLFISHDLGVVRYMSDRIAVMYAGRIVEMGPAEDVFHSPLHPYTSLLLKSIPHMDHVLEAQDVAAEETTMTERGGCPFYKRCPKRWEKCLKAVPALYEEAPGHAAACYLYQKEEHNEEDMVIQ

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Crispr_ID: NZ_CP018100_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018100_3

839683-839896

TypeIII

NA:I-C

Consensus_repeat	Method
ATGAGTGCGTGGATTGAAATAT	PILER-CR
GTCGCACTCTACATGAGTGCGTGGATTGAA	CRISPRCasFinder

2 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK

The CRISPR arrays of NZ_CP018100_3

>merge|NZ_CP018100|3|839683-839896|PILER-CR,CRISPRCasFinder
TGAGTGCGTGGATTGAAATATAAGTAATTGGAACATGGTTAACACATCCTTCTGTCGCACTCTACATGAGTGCGTGGATTGAATAACATAGACGTATTGCTCTCTAGTTCCATATTGAGTCGCACTCTATATGAGTGCGTGGATTGAAATATCATATCTTCAACCGAATTACGCAGCGTCATCAATCGCACTCTCCATGAGTGCATAGATCACA

>NZ_CP018100|3|2|839683-839834|PILER-CR
TGAGTGCGTGGATTGAAATATA	AGTAATTGGAACATGGTTAACACATCCTTCTGTCGCACTCTACA
TGAGTGCGTGGATTGAATAACA	TAGACGTATTGCTCTCTAGTTCCATATTGAGTCGCACTCTATATGA
GTGCGTGGATTGAAATAT

>NZ_CP018100|3|3|839736-839896|CRISPRCasFinder
GTCGCACTCTACATGAGTGCGTGGATTGAA	TAACATAGACGTATTGCTCTCTAGTTCCATATTGA
GTCGCACTCTATATGAGTGCGTGGATTGAA	ATATCATATCTTCAACCGAATTACGCAGCGTCATCA
ATCGCACTCTCCATGAGTGCATAGATCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP018100.1\|WP_003217808.1\|842273_842498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018100.1\|WP_039177303.1\|843731_843992_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP018100.1\|WP_081124133.1\|843392_843557_+\|gamma-type-small-acid-soluble-spore-protein	unknown	unknown	unknown
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP018100.1\|WP_024425209.1\|844139_844670_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP018100.1\|WP_081124134.1\|844765_846508_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP018100.1\|WP_081124135.1\|846620_847643_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP018100.1\|WP_024425211.1\|842579_843332_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP018100.1\|WP_081124125.1\|831633_832524_+\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP018100.1\|WP_080708071.1\|847611_848589_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493

Protein	Function_ID	Function_description	E-value
NZ_CP018100.1\|WP_081124131.1\|838043_838889_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.19719e-51
NZ_CP018100.1\|WP_081124135.1\|846620_847643_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.47456e-173
NZ_CP018100.1\|WP_039177303.1\|843731_843992_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.62012e-16
NZ_CP018100.1\|WP_081124128.1\|835635_836868_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	5.43062e-65
NZ_CP018100.1\|WP_081124130.1\|837747_838116_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.29348e-16
NZ_CP018100.1\|WP_081124123.1\|829880_830483_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.21436e-10
NZ_CP018100.1\|WP_081124132.1\|841186_842287_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.68536e-150
NZ_CP018100.1\|WP_081124127.1\|833816_835643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.65184e-63
NZ_CP018100.1\|WP_024425209.1\|844139_844670_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	3.46751e-129
NZ_CP018100.1\|WP_081124134.1\|844765_846508_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP018100.1\|WP_081124129.1\|836860_837751_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.67567e-80
NZ_CP018100.1\|WP_073204399.1\|829549_829714_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11
NZ_CP018100.1\|WP_024425211.1\|842579_843332_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.04693e-172
NZ_CP018100.1\|WP_081124126.1\|832539_833847_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.137e-54
NZ_CP018100.1\|WP_080708071.1\|847611_848589_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.51498e-131
NZ_CP018100.1\|WP_046314324.1\|840014_840995_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.11589e-43
NZ_CP018100.1\|WP_073204404.1\|830430_830652_+\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	7.34179e-25

>NZ_CP018100.1|WP_081124131.1|838043_838889_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIDGSTLSNIIMDSSKKQSFYENVISLHRKQWGENRLLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGIPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALIMPETVGEAFKVDVMTPHHSDYNSVKLDKVNQGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEDAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDAIS
>NZ_CP018100.1|WP_081124130.1|837747_838116_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLKLTITFFEAKSKKGNAYQQFVQDIKETLDLQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP018100.1|WP_081124129.1|836860_837751_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDLIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAQKMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGEGS
>NZ_CP018100.1|WP_081124128.1|835635_836868_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MPERWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYAKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMNQVRPKPMMSEGRGFFGTGKTGRFSEALWPPIGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVETGSKKAKDQHLFSTESLLFPDDFKLEAGIELSTEESEELKPFSSLHPIGGERRLAHIEDRPHVYQQDWTCPDAIKESLKNKLYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP018100.1|WP_081124127.1|833816_835643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEELQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKAGAKKFQELGGTLIFPVFNESSAEPNNAELNNAPNKILGEISHEQPSSIARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVDDLLEFYAVWTEVQNQDKAANASASPYHLALQEVEGLMAARKTLRDFKQKEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAQWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLLKNEQMKKVATQYVRAVETYFENMNLTVAPIDLSEASLFYERRIEDYLEQRGFVGNTRTEAKNDITQLLQKYFKGEYSKHHGQPIKPPAPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKASEIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQSEFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTTWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTIAECMIIALQLEEVSGHA
>NZ_CP018100.1|WP_081124126.1|832539_833847_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTREFSKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDEDRPIRESAIRGHLRFWWRATRGAVCKNANELSKREAEIFGHTEQASQIQVVTHYEKDEVKRNSNVFFKKKNHPFPRYILSNMKDKTPYLMKAQFSLNIRISKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPASSREWPTLSREFKVQAFPSSMISSWRSVIQSYETFRRRSNPTKKMGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDKGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPQIEALSLLGKGKPLPDVTDEQSIYPTATYSKNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNYKNKH
>NZ_CP018100.1|WP_081124125.1|831633_832524_+|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAIFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNFDVDNLKVWSDNIKKLVPKTKGIARIAAKGVDMVENDTQKRTRPILILASNLKRQTANSSSKMFEILDKAFDLILIKQKSVFHLRAPNEDKQLGWWANELNCYDPERSKEQEDKEKKKNSEKNKDNSKDKVISNKLSDLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP018100.1|WP_073204404.1|830430_830652_+|hypothetical-protein
MSVQEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP018100.1|WP_081124123.1|829880_830483_+|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLQQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKVYQQLTDKQKMVLTQIYVEGQTMKEIADQLGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP018100.1|WP_073204399.1|829549_829714_-|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD
>NZ_CP018100.1|WP_046314324.1|840014_840995_-|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHIVAIVVWAIGGHPGYTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP018100.1|WP_081124132.1|841186_842287_+|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYGGIVPDTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSALEEGVQHELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETVKGRKTEKEQLIDFLKEEGGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTIEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP018100.1|WP_003217808.1|842273_842498_-|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD
>NZ_CP018100.1|WP_024425211.1|842579_843332_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MSQRKCALITGSSRGVGKEVALRLAEKGYDIVINYARSKKAALETAEEIEAMGVKTLVVKANVGQPEKIKDMFQQIDETFGRLDVFVNNAASGVQRPIMDLEENHWDWTMNINAKALLFCGQEAAKLMEKNGGGHIVSISSLGSIRYLENYTVVGVSKAALEALTRYLSVELSQKNIVVNAVSGGAIDTDALKHFPNREELLEDAKKNTPAGRMVEIKDMVDSVEFLVSGKADMIRGQTIIVDGGRSLLV
>NZ_CP018100.1|WP_081124133.1|843392_843557_+|gamma-type-small-acid-soluble-spore-protein
MDQQQNKTNAQQVKKQNQAAAQGGQFGTEFASETDVQQVKKYNQKAEQNKQQNS
>NZ_CP018100.1|WP_039177303.1|843731_843992_+|hypothetical-protein
MSDFDQLVKEQMQLMDQLLDVQGELDLCLETEKQLLQDEKKEEWHRLCDQIKQKREELQKVQTLFTKQTEEVINSYKQMEKSSSVM
>NZ_CP018100.1|WP_024425209.1|844139_844670_+|DUF402-domain-containing-protein
MGYPKEGETIQIQSYKHNGLIHRIWNETTILKATELCIIGANDRTMVTESDGRTWMTREPAICYFHAKQWFNVIGMLRDDGVYYYCNISSPFATDDEAIKYIDYDLDVKVFPDMTYNILDEDEYADHKRQMNYPKEIDSILREHLNTLLHWIHQRKGPFAPEFVDMWYERFLHYTK
>NZ_CP018100.1|WP_081124134.1|844765_846508_+|ABC-transporter-ATP-binding-protein
MGVIKRYMAFVTPYKKQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSGSAEEKTSTLLIIMGIMLVLFLVLRPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKEFVITGLMNIWLDMMTVLIVIAIMCTLDLKLTIVSVIIFPLYAFAVKYFYGRLRKLTKERSQALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNTITDIAPLLIIAFAGYTVINGSLSIGTMIAFVGYIDRMYNPIRRLINSSTTLTQSVASMDRIFEFIDEPYEVTDRPNAKEANHLKGEVEFKHVSFRYEHTQEEILHNISLKVEKGQTVALVGMSGGGKSTLVSLIPRFYDVTNGSLEIDGIDIKEYKARSLRNQVGMVLQDTFLFSDTIKENIAVGDPEAPFENIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADQIVVMEQGEIVEKGTHEELMNQDSHYRHLFTIQTLN
>NZ_CP018100.1|WP_081124135.1|846620_847643_+|ABC-transporter-ATP-binding-protein
MKEQDVLLDVKQLSIAFQHKKQKVPIVHHISFSIQKGETLGIVGESGCGKSITSMSLMGLNQQTDTTGEVHFEGQNLLSLSEKQWREIRGNDISMIFQEPMTSLNPLMTIGKQMTEALFTHQAIGQKEAKAKAIDLLQTVGLKQAESLLKKYPHELSGGMRQRVMIAMAMLCHPKLMIADEPTTALDVTIQAQILRLLKKLNEEMDTAILFITHDLGVVRQICQRVMIMYAGRIVEEGTVDRIFQKPLHPYTKGLFASVPSFKEKKEKLISIAGHVPKPWAIRSGCQFAPRCPYQMPQCLEKDPALQSIEQNHRVACFLMEGGEDTDSPTLASESADKTV
>NZ_CP018100.1|WP_080708071.1|847611_848589_+|ABC-transporter-ATP-binding-protein
MQVNQLTKRYDTAAFFSKHKQSTLALNQVSFHVKEGETLGIVGESGCGKSTLGKSLMRLTEPTSGSIQLKGQEITLLKERDMRSLRKDIQMIFQDPYASLNPRMKIKDILEEPLIVHQHGTKAERRKRVKEMLHIVGFDPSYGERYAHQFSGGQRQRIGIARALITHPSLVIADEPVSALDVSVQAQILNLMLELQKTLSLTYLFISHDLGVVRYMSDRIAVMYAGRIVEMGPAEDVFHSPLHPYTSLLLKSIPHMDHVLEAQDVAAEETTMTERGGCPFYKRCPKRWEKCLKAVPALYEEAPGHAAACYLYQKEEHNEEDMVIQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018100_1	1.6\|831196\|33\|NZ_CP018100\|PILER-CR,CRISPRCasFinder,CRT	831196-831228	33	NZ_CP015608	Bacillus safensis strain U14-5 plasmid unnamed1, complete sequence	15043-15075	1	0.97
NZ_CP018100_2	2.1\|839056\|38\|NZ_CP018100\|CRISPRCasFinder	839056-839093	38	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	16233-16270	2	0.947
NZ_CP018100_1	1.7\|831261\|35\|NZ_CP018100\|PILER-CR,CRISPRCasFinder,CRT	831261-831295	35	MF417903	Uncultured Caudovirales phage clone 10F_3, partial genome	14275-14309	4	0.886
NZ_CP018100_1	1.6\|831196\|33\|NZ_CP018100\|PILER-CR,CRISPRCasFinder,CRT	831196-831228	33	MT774394	CrAssphage cr271_1, complete genome	91251-91283	10	0.697
NZ_CP018100_1	1.1\|830866\|35\|NZ_CP018100\|PILER-CR,CRISPRCasFinder,CRT	830866-830900	35	NZ_CP030922	Escherichia coli strain KL53 plasmid pKL53-S, complete sequence	5926-5960	11	0.686

1. spacer 1.6|831196|33|NZ_CP018100|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015608 (Bacillus safensis strain U14-5 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.97

tcccatttttaataaagtgaacaacttattata	CRISPR spacer
gcccatttttaataaagtgaacaacttattata	Protospacer
 ********************************

2. spacer 2.1|839056|38|NZ_CP018100|CRISPRCasFinder matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 2, identity: 0.947

atcgaaaccatttgtctctaagtttacaatgcctggcc	CRISPR spacer
tccgaaaccatttgtctctaagtttacaatgcctggcc	Protospacer
 .************************************

3. spacer 1.7|831261|35|NZ_CP018100|PILER-CR,CRISPRCasFinder,CRT matches to MF417903 (Uncultured Caudovirales phage clone 10F_3, partial genome) position: , mismatch: 4, identity: 0.886

tcaatgactgaatagataatcgggttgttttcgtt---	CRISPR spacer
tctatgactgaatagataatcgg---gttttcgttcat	Protospacer
** ********************   *********

4. spacer 1.6|831196|33|NZ_CP018100|PILER-CR,CRISPRCasFinder,CRT matches to MT774394 (CrAssphage cr271_1, complete genome) position: , mismatch: 10, identity: 0.697

tcccatttttaataaagtgaacaacttattata	CRISPR spacer
acccatttttaataaagttaataactgcaagcc	Protospacer
 ***************** **.****    ..

5. spacer 1.1|830866|35|NZ_CP018100|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030922 (Escherichia coli strain KL53 plasmid pKL53-S, complete sequence) position: , mismatch: 11, identity: 0.686

atcaatagctttgcagtatcagttttttgaatgtc	CRISPR spacer
cgtaatagcgtagcagtatcagttttttccagaaa	Protospacer
  .****** * ****************  * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22158 : 30883

uncultured_Mediterranean_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024426746.1\|22158_23433_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.9e-97	50.6
WP_024425758.1\|23534_24365_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-09	57.1
WP_041115176.1\|24676_25336_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	2.2e-22	33.6
WP_024425759.1\|25332_25956_-	AAA family ATPase	S5MMC6	Bacillus_phage	4.1e-18	28.9
WP_046314483.1\|26041_27343_-	LysM peptidoglycan-binding domain-containing protein	A0A2P1CIG4	Microbacterium_phage	3.6e-08	36.5
WP_034284265.1\|27388_27943_-	cysteine hydrolase	NA	NA	NA	NA
WP_034284264.1\|28022_28499_+	nucleoside deaminase	NA	NA	NA	NA
WP_046314485.1\|29170_30883_+	DNA polymerase III subunit gamma/tau	D9ZNI9	Clostridium_phage	5.2e-55	34.6

DBSCAN-SWA_2

156537 : 203261

Bacillus_phage(14.29%)

bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034283879.1\|156537_157281_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_003217042.1\|157446_157884_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_039175996.1\|157904_158297_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_073978991.1\|158697_159201_+	hypothetical protein	NA	NA	NA	NA
WP_081123882.1\|159620_160145_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_155889675.1\|160422_160896_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_081125235.1\|161085_162084_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_034283869.1\|162317_162761_+	DUF2521 family protein	NA	NA	NA	NA
WP_034283867.1\|162819_163533_+	N-acetylmuramoyl-L-alanine amidase CwlD	A0A0N6W8I1	Bacillus_phage	3.8e-12	27.8
WP_024425873.1\|163636_164695_+	P-loop NTPase	NA	NA	NA	NA
WP_024425617.1\|164736_165321_-	hypothetical protein	NA	NA	NA	NA
WP_081123883.1\|165411_166014_+	KinB-signaling pathway activation protein	NA	NA	NA	NA
WP_024425619.1\|166006_166771_-	polysaccharide deacetylase family sporulation protein PdaB	NA	NA	NA	NA
WP_034283931.1\|172710_174150_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.4e-138	56.9
WP_081123885.1\|174197_175178_+	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_081123886.1\|175220_176465_-	DUF1343 domain-containing protein	NA	NA	NA	NA
WP_081123887.1\|176476_178396_-	hypothetical protein	NA	NA	NA	NA
WP_065215426.1\|178409_179765_-	penicillin binding protein PBP4B	NA	NA	NA	NA
WP_041115368.1\|179778_181158_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_041106088.1\|181154_182024_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_081123888.1\|182038_182950_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_081125236.1\|183728_184640_+	arginase	A0A1V0SJM8	Klosneuvirus	1.1e-24	33.3
WP_024424449.1\|184823_185387_+	RNA polymerase sigma factor SigW	NA	NA	NA	NA
WP_081123889.1\|185401_186028_+	anti-sigma-W factor RsiW	NA	NA	NA	NA
WP_008344027.1\|186245_187067_+	TIGR00159 family protein	NA	NA	NA	NA
WP_046313592.1\|187059_188487_+	YbbR-like domain-containing protein	NA	NA	NA	NA
WP_034284242.1\|188512_189859_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_065215420.1\|190435_192238_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	4.9e-104	40.6
WP_155889676.1\|192321_192630_+	hypothetical protein	NA	NA	NA	NA
WP_081123891.1\|193247_193439_+	hypothetical protein	NA	NA	NA	NA
WP_081123892.1\|193453_194371_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	4.9e-20	28.2
WP_081123893.1\|194367_195132_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_081123894.1\|195871_196594_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.2e-15	29.5
WP_081123895.1\|197084_198617_-	PH domain-containing protein	NA	NA	NA	NA
WP_081123896.1\|198617_199139_-	PH domain-containing protein	NA	NA	NA	NA
WP_081123897.1\|199207_200128_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.4e-29	32.9
WP_081123898.1\|200127_200817_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_081123899.1\|200864_201266_-	DUF4064 domain-containing protein	NA	NA	NA	NA
WP_081123900.1\|201453_201750_+	DUF2089 family protein	NA	NA	NA	NA
WP_081123901.1\|201750_202044_+	hypothetical protein	NA	NA	NA	NA
WP_081123902.1\|202150_202300_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA
WP_081123903.1\|202335_202488_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA
WP_081123904.1\|202532_202682_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA
WP_081123905.1\|202717_202876_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA
WP_035390638.1\|202918_203068_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA
WP_035390638.1\|203111_203261_-\|bacteriocin	aureocin A53 family class IId bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_3

634409 : 644305

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024426701.1\|634409_635705_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-18	26.9
WP_024426700.1\|635777_636500_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	2.0e-45	43.2
WP_003214349.1\|636492_636747_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FKD5	Synechococcus_phage	1.2e-05	33.3
WP_024426699.1\|636743_637427_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_081124054.1\|637410_639642_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.5e-159	41.8
WP_024424615.1\|639617_641048_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.9e-51	32.5
WP_081124055.1\|641144_642185_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	2.6e-65	43.7
WP_024424512.1\|642181_642751_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.5e-30	39.5
WP_024426697.1\|642766_644305_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.8e-76	51.8

DBSCAN-SWA_4

1017334 : 1055678

uncultured_Caudovirales_phage(50.0%)

portal,integrase,head,capsid,terminase,tail

attL 1015024:1015039|attR 1036986:1037001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1015024:1015039	attL	NA	NA	NA	NA
WP_024425480.1\|1017334_1018195_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	2.9e-54	44.6
WP_008348804.1\|1018251_1018488_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_081124173.1\|1018777_1019074_+	competence protein ComK	NA	NA	NA	NA
WP_081124174.1\|1019098_1020292_-\|integrase	site-specific integrase	S6C485	Thermus_phage	9.7e-85	42.6
WP_081124175.1\|1020293_1020809_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.1e-82	88.6
WP_081124176.1\|1020884_1021463_-	hypothetical protein	NA	NA	NA	NA
WP_081124177.1\|1022026_1022404_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	1.1e-15	41.0
WP_081124178.1\|1022585_1022795_+	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	2.9e-13	53.6
WP_039167519.1\|1022967_1023300_-	hypothetical protein	NA	NA	NA	NA
WP_081124179.1\|1023367_1023673_+	hypothetical protein	A0A2H4JDL0	uncultured_Caudovirales_phage	2.5e-21	50.0
WP_081124180.1\|1023669_1024359_+	phage antirepressor	A0A0F6N3N8	Staphylococcus_phage	1.2e-31	49.0
WP_081124181.1\|1024425_1024995_+	helix-turn-helix transcriptional regulator	A0A2H4J884	uncultured_Caudovirales_phage	6.5e-79	76.7
WP_081125252.1\|1024997_1025276_+	hypothetical protein	A0A2H4J4M9	uncultured_Caudovirales_phage	7.6e-41	93.5
WP_081124182.1\|1025481_1025661_+	hypothetical protein	A0A2H4JCC7	uncultured_Caudovirales_phage	3.2e-24	91.5
WP_081124183.1\|1025662_1026613_+	hypothetical protein	S6C475	Thermus_phage	1.1e-107	61.7
WP_081124184.1\|1026605_1027478_+	recombination protein RecT	S6AVW6	Thermus_phage	9.0e-88	60.3
WP_081124186.1\|1027573_1028341_+	DnaD domain protein	A0A2H4J6G9	uncultured_Caudovirales_phage	2.0e-115	88.5
WP_081124187.1\|1028204_1029134_+	hypothetical protein	A0A2H4J4P8	uncultured_Caudovirales_phage	7.7e-138	94.3
WP_081124188.1\|1029547_1030003_+	DUF1064 domain-containing protein	A0A2H4J891	uncultured_Caudovirales_phage	1.5e-70	92.1
WP_081124190.1\|1030364_1030568_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	1.9e-25	86.2
WP_081124191.1\|1030583_1030832_+	hypothetical protein	A0A2H4JCD8	uncultured_Caudovirales_phage	1.0e-17	56.6
WP_081124192.1\|1030828_1031080_+	hypothetical protein	A0A2H4JA61	uncultured_Caudovirales_phage	9.9e-32	85.5
WP_081124193.1\|1031093_1032080_+	site-specific DNA-methyltransferase	A0A2H4JD00	uncultured_Caudovirales_phage	2.4e-166	94.5
WP_081124194.1\|1032108_1032666_+	dUTPase	R9TQ23	Paenibacillus_phage	7.1e-38	50.8
WP_081124195.1\|1032669_1033041_+	hypothetical protein	A0A2H4J4Q6	uncultured_Caudovirales_phage	6.8e-61	88.6
WP_081124196.1\|1033539_1033965_+	hypothetical protein	A0A2H4J8A0	uncultured_Caudovirales_phage	1.0e-68	91.5
WP_081124197.1\|1034176_1034944_+	hypothetical protein	NA	NA	NA	NA
WP_081124198.1\|1034956_1035688_+	hypothetical protein	NA	NA	NA	NA
WP_081124199.1\|1035783_1036239_+	hypothetical protein	A0A2H4J4R7	uncultured_Caudovirales_phage	1.0e-79	96.0
WP_081124200.1\|1036395_1036896_+	hypothetical protein	NA	NA	NA	NA
WP_155889680.1\|1036926_1037367_+	DUF3908 domain-containing protein	NA	NA	NA	NA
1036986:1037001	attR	NA	NA	NA	NA
WP_081124202.1\|1037515_1038295_+	hypothetical protein	A0A2H4J4R0	uncultured_Caudovirales_phage	1.4e-111	83.0
WP_081124203.1\|1038281_1039484_+\|terminase	PBSX family phage terminase large subunit	A0A2H4J8B0	uncultured_Caudovirales_phage	3.6e-220	94.4
WP_081124204.1\|1039504_1040965_+\|portal	phage portal protein	A0A1Q1PVT0	Bacillus_phage	2.1e-121	49.4
WP_081125253.1\|1040945_1041860_+\|head	phage head morphogenesis protein	A0A1Q1PVS4	Bacillus_phage	1.7e-73	48.8
WP_081124205.1\|1041982_1042609_+	scaffolding protein	K4K7P1	Streptococcus_phage	1.3e-11	40.4
WP_081124206.1\|1042622_1043438_+\|capsid	N4-gp56 family major capsid protein	Q79S85	Temperate_phage	7.3e-76	56.1
WP_081124207.1\|1043391_1043694_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_081124208.1\|1043709_1044006_+	hypothetical protein	Q4ZC67	Staphylococcus_virus	1.6e-12	41.0
WP_081124209.1\|1044005_1044344_+\|head	phage head closure protein	NA	NA	NA	NA
WP_081124210.1\|1044336_1044756_+	HK97 gp10 family phage protein	O48447	Bacillus_phage	3.9e-33	53.7
WP_081124211.1\|1044771_1045173_+	DUF3168 domain-containing protein	W8EK61	Geobacillus_phage	1.9e-24	43.1
WP_024720108.1\|1045186_1045711_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_155889681.1\|1045676_1045973_+	alkaline phosphatase	Q0PDK9	Bacillus_phage	1.1e-26	68.6
WP_081124212.1\|1046041_1046548_+	hypothetical protein	A0A1W6JQN4	Staphylococcus_phage	5.3e-16	35.9
WP_081124213.1\|1046568_1046877_+	hypothetical protein	NA	NA	NA	NA
WP_081124214.1\|1046881_1051543_+	hypothetical protein	M9NRJ5	Staphylococcus_phage	1.2e-34	25.1
WP_081124215.1\|1051539_1052307_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_081124216.1\|1052321_1055678_+	hypothetical protein	Q5YA57	Bacillus_phage	3.6e-129	47.0

DBSCAN-SWA_5

1727819 : 1734080

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008360380.1\|1727819_1728212_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	6.1e-28	54.2
WP_034281935.1\|1728171_1730274_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	83.4
WP_024424085.1\|1730291_1731272_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4JMU8	Bacillus_phage	3.2e-150	80.2
WP_024424084.1\|1731356_1731974_+	hypothetical protein	A0A127AYS1	Bacillus_phage	5.1e-45	45.3
WP_081124419.1\|1732041_1732800_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	1.2e-51	50.0
WP_024424083.1\|1733120_1734080_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	3.9e-52	39.6

DBSCAN-SWA_6

2084202 : 2091912

Ostreococcus_lucimarinus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081124543.1\|2084202_2085294_-	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	2.8e-22	27.3
WP_024422806.1\|2085293_2086466_-	chorismate synthase	A0A291AU41	Pandoravirus	2.6e-42	35.4
WP_034280426.1\|2086539_2087319_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_024422808.1\|2087465_2087912_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.0e-27	42.3
WP_061109294.1\|2088041_2089004_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	2.9e-07	25.6
WP_024422810.1\|2089028_2089733_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_061109295.1\|2089736_2090504_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_008344541.1\|2090618_2090849_-	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_003215789.1\|2090873_2091443_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	1.8e-49	57.3
WP_003215863.1\|2091633_2091912_-	non-specific DNA-binding protein Hbs	A7KV42	Bacillus_phage	5.6e-28	74.2

DBSCAN-SWA_7

2129617 : 2136005

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081124551.1\|2129617_2130769_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.4e-24	37.7
WP_034280380.1\|2130882_2131362_-	DUF3907 family protein	NA	NA	NA	NA
WP_024422847.1\|2131475_2132069_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.0e-15	36.0
WP_046311657.1\|2132058_2132817_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-10	39.2
WP_012010430.1\|2133026_2133119_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_024422849.1\|2133209_2133734_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_024422850.1\|2133758_2134112_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_029706184.1\|2134225_2134690_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.6e-43	68.3
WP_080943458.1\|2134716_2135343_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.9e-55	56.9
WP_024422851.1\|2135354_2136005_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.0e-40	40.3

DBSCAN-SWA_8

2738957 : 2800362

Bacillus_phage(23.33%)

plate,portal,holin,capsid,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064497782.1\|2738957_2739362_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_081124705.1\|2739516_2739708_-	hypothetical protein	NA	NA	NA	NA
WP_024424926.1\|2739834_2740272_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	9.1e-49	64.1
WP_034665318.1\|2740403_2740550_+	YtzI protein	NA	NA	NA	NA
WP_034279393.1\|2740558_2740996_-	FixH family protein	NA	NA	NA	NA
WP_003217624.1\|2741114_2741588_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_041107381.1\|2741714_2741939_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	5.5e-26	71.6
WP_024424929.1\|2741940_2742507_-	carbonic anhydrase	NA	NA	NA	NA
WP_081124706.1\|2742721_2743705_+	adhesin	NA	NA	NA	NA
WP_024424931.1\|2743782_2744025_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_041116879.1\|2744201_2745533_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_041107385.1\|2745549_2746602_+	membrane protein	NA	NA	NA	NA
WP_008360682.1\|2746670_2746829_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_081124707.1\|2746854_2747046_+	hypothetical protein	NA	NA	NA	NA
WP_081124708.1\|2747152_2748277_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_065214483.1\|2748263_2749724_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.3e-83	36.2
WP_024424937.1\|2749795_2750614_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_034279373.1\|2750628_2751456_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	A0A2D1G8C7	Mycobacterium_phage	2.4e-05	32.0
WP_081124709.1\|2751437_2753183_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_081124710.1\|2753175_2754594_-	isochorismate synthase	NA	NA	NA	NA
WP_081125294.1\|2754977_2755916_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_041107397.1\|2756034_2756769_+	hypothetical protein	NA	NA	NA	NA
WP_081124711.1\|2756855_2757332_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_034284310.1\|2765496_2766072_+	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA
WP_024423229.1\|2766163_2766352_+	hypothetical protein	NA	NA	NA	NA
WP_081124712.1\|2766311_2766866_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_034284308.1\|2767008_2768556_-	flotillin family protein	A0A2I2L4B2	Orpheovirus	9.5e-08	27.9
WP_034284306.1\|2768567_2769098_-	hypothetical protein	NA	NA	NA	NA
WP_081124713.1\|2769304_2769784_+	DinB family protein	NA	NA	NA	NA
WP_048237229.1\|2769823_2771032_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_081124714.1\|2771059_2772529_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_034284303.1\|2772735_2773293_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_046313435.1\|2773490_2773673_-	hypothetical protein	NA	NA	NA	NA
WP_081124715.1\|2773789_2774593_-	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	9.2e-63	69.7
WP_046313431.1\|2774612_2774876_-\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	1.0e-26	70.1
WP_008344062.1\|2774888_2775101_-	hypothetical protein	A0A290GDY2	Caldibacillus_phage	1.0e-13	56.5
WP_075621941.1\|2775157_2775304_-	XkdX family protein	NA	NA	NA	NA
WP_081124716.1\|2775304_2775652_-	hypothetical protein	M4ZR44	Bacillus_phage	7.6e-14	44.1
WP_081124717.1\|2775654_2777064_-	hypothetical protein	A0A1P8CWR7	Bacillus_phage	4.9e-19	31.7
WP_081124718.1\|2777104_2777197_-\|holin	holin	NA	NA	NA	NA
WP_081124719.1\|2777255_2778461_-	hypothetical protein	A0A2H4J4R1	uncultured_Caudovirales_phage	2.7e-66	51.9
WP_024423249.1\|2778548_2778932_-	hypothetical protein	NA	NA	NA	NA
WP_081124720.1\|2778943_2779867_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	7.2e-11	29.2
WP_081124721.1\|2779850_2780900_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.9e-68	43.2
WP_081124722.1\|2780892_2781315_-	DUF2634 domain-containing protein	A0A1V0DZX2	Clostridioides_phage	4.6e-05	34.1
WP_081124723.1\|2781329_2781596_-	DUF2577 domain-containing protein	S6C459	Thermus_phage	2.1e-08	37.5
WP_070325944.1\|2781592_2782603_-\|portal	phage portal protein	H7BV96	unidentified_phage	3.0e-34	27.9
WP_081124724.1\|2782614_2783283_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2SUI2	Clostridium_phage	1.0e-22	30.1
WP_081124725.1\|2783275_2787415_-	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	2.2e-43	45.0
WP_095357030.1\|2787415_2787553_-	hypothetical protein	NA	NA	NA	NA
WP_012011040.1\|2787594_2788035_-\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	9.9e-11	36.8
WP_073207186.1\|2788187_2788277_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_024423257.1\|2788560_2789004_-\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	5.8e-27	46.5
WP_034282473.1\|2789005_2790352_-\|portal	phage portal protein	S5MNC1	Brevibacillus_phage	2.1e-75	39.5
WP_034282476.1\|2790355_2790568_-	hypothetical protein	NA	NA	NA	NA
WP_034282479.1\|2790554_2791010_-	hypothetical protein	NA	NA	NA	NA
WP_081124727.1\|2791014_2791512_-	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	1.2e-36	45.0
WP_081124728.1\|2791508_2791865_-	DUF3599 family protein	NA	NA	NA	NA
WP_024423261.1\|2791861_2792245_-	DUF3199 family protein	NA	NA	NA	NA
WP_081124729.1\|2792258_2793182_-\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	5.2e-110	64.9
WP_081124730.1\|2793204_2794293_-\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	5.2e-61	41.4
WP_081124731.1\|2794331_2795789_-\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	7.1e-138	52.5
WP_034282494.1\|2795785_2797099_-\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	1.7e-151	61.5
WP_034282496.1\|2797095_2797740_-	helix-turn-helix domain-containing protein	A0A2P1JTW4	Anoxybacillus_phage	1.4e-42	44.3
WP_034282498.1\|2797892_2798411_-	sigma-70 family RNA polymerase sigma factor	A0A2H4J6J3	uncultured_Caudovirales_phage	4.0e-35	46.2
WP_024423268.1\|2798537_2798744_-	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	2.6e-14	68.5
WP_034282500.1\|2798740_2799142_-	hypothetical protein	NA	NA	NA	NA
WP_080701215.1\|2799192_2799435_-	hypothetical protein	NA	NA	NA	NA
WP_034282502.1\|2799561_2799825_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024425910.1\|2799984_2800362_+	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	6.1e-17	44.5

DBSCAN-SWA_9

2891474 : 2938960

Bacillus_phage(37.04%)

protease,portal,integrase,head,holin,capsid,coat,terminase,tail

attL 2893456:2893515|attR 2926635:2926734

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034282604.1\|2891474_2892473_+	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	4.4e-30	48.4
WP_024425965.1\|2892519_2892726_-	hypothetical protein	NA	NA	NA	NA
WP_081124748.1\|2892917_2893334_+	hypothetical protein	NA	NA	NA	NA
2893456:2893515	attL	NA	NA	NA	NA
WP_081124749.1\|2893751_2894087_-	hypothetical protein	NA	NA	NA	NA
WP_081124750.1\|2894183_2894423_-\|holin	phage holin	A0A1D6Z272	Staphylococcus_phage	1.1e-11	53.8
WP_081124751.1\|2894419_2895151_-	hypothetical protein	F8WPX5	Bacillus_phage	2.5e-67	56.9
WP_024426116.1\|2895177_2895444_-\|holin	holin	D2J075	Enterococcus_phage	6.2e-08	42.3
WP_081124752.1\|2895474_2895642_-	XkdX family protein	NA	NA	NA	NA
WP_081124753.1\|2895643_2895913_-	hypothetical protein	M4ZR44	Bacillus_phage	2.0e-14	46.8
WP_081124754.1\|2895927_2897493_-	DUF2479 domain-containing protein	M4ZRP1	Bacillus_phage	1.7e-49	41.5
WP_081124755.1\|2897505_2899395_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_081124756.1\|2899406_2900912_-	hypothetical protein	A0A0U4JID8	Exiguobacterium_phage	3.0e-38	31.0
WP_081124757.1\|2900917_2901745_-\|tail	phage tail family protein	A6M962	Geobacillus_virus	1.7e-56	44.5
WP_081124758.1\|2901749_2907029_-\|tail	phage tail tape measure protein	A0A2H4J380	uncultured_Caudovirales_phage	1.5e-100	42.8
WP_081124759.1\|2907277_2907586_-	hypothetical protein	A0A0M4R2F4	Enterococcus_phage	2.6e-05	31.1
WP_081124760.1\|2907739_2908315_-\|tail	phage tail protein	NA	NA	NA	NA
WP_081124761.1\|2908327_2908666_-	hypothetical protein	NA	NA	NA	NA
WP_081124762.1\|2908665_2909085_-	hypothetical protein	E2ELI9	Clostridium_phage	1.6e-10	32.4
WP_081124763.1\|2909084_2909438_-\|head	phage head closure protein	A6M954	Geobacillus_virus	8.2e-16	41.2
WP_081124764.1\|2909448_2909706_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	1.5e-14	47.7
WP_081124765.1\|2909708_2909969_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_081124766.1\|2909982_2911110_-\|capsid	phage major capsid protein	A0A1B1P7R4	Bacillus_phage	7.2e-106	52.5
WP_081124767.1\|2911112_2911865_-\|protease	Clp protease ClpP	A0A0K2CZ28	Paenibacillus_phage	6.8e-60	50.4
WP_155889705.1\|2911851_2913084_-\|portal	phage portal protein	A0A2I6PEA6	Staphylococcus_phage	1.2e-74	41.4
WP_081124769.1\|2913105_2914893_-\|terminase	terminase large subunit	A0A1B1P7R3	Bacillus_phage	4.9e-242	67.1
WP_081124770.1\|2914867_2915191_-\|terminase	phage terminase small subunit P27 family	A0A0K2CYB1	Paenibacillus_phage	6.8e-33	69.2
WP_081124771.1\|2915291_2915648_-	HNH endonuclease	A0A1B1P8D2	Bacillus_phage	1.1e-23	49.1
WP_155889692.1\|2916053_2916215_-	hypothetical protein	NA	NA	NA	NA
WP_081124773.1\|2916458_2916902_-	hypothetical protein	NA	NA	NA	NA
WP_081124775.1\|2917121_2917352_-	hypothetical protein	NA	NA	NA	NA
WP_081124776.1\|2917856_2918609_-	hypothetical protein	NA	NA	NA	NA
WP_081124777.1\|2918636_2919011_-	sigma-70 family RNA polymerase sigma factor	A0A0N9RZI0	Paenibacillus_phage	2.1e-09	35.0
WP_155889693.1\|2919020_2919365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081124779.1\|2919605_2920142_-	hypothetical protein	NA	NA	NA	NA
WP_081124780.1\|2920166_2920712_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_081124782.1\|2920935_2921466_-	hypothetical protein	NA	NA	NA	NA
WP_081124783.1\|2921692_2922874_-	hypothetical protein	A0A288WGM1	Bacillus_phage	2.2e-44	28.0
WP_034622472.1\|2922967_2923195_+	helix-turn-helix transcriptional regulator	A0A1P8CWW6	Bacillus_phage	9.6e-10	50.8
WP_081124784.1\|2923394_2923706_-	hypothetical protein	NA	NA	NA	NA
WP_081125296.1\|2924235_2924463_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081124785.1\|2924477_2925209_-	helix-turn-helix domain-containing protein	A0A288WFX2	Bacillus_phage	1.4e-17	38.9
WP_081124786.1\|2925373_2926402_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.9e-36	26.0
WP_024423354.1\|2926634_2926997_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	6.2e-19	45.3
2926635:2926734	attR	NA	NA	NA	NA
WP_081124787.1\|2927070_2927925_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_008346813.1\|2928195_2928432_-	YuzB family protein	NA	NA	NA	NA
WP_034282611.1\|2928687_2929755_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_081124788.1\|2929805_2930036_-	hypothetical protein	NA	NA	NA	NA
WP_081124789.1\|2930135_2930465_-	YuzD family protein	NA	NA	NA	NA
WP_081124790.1\|2930649_2930886_+	NifU family protein	Q58MC7	Prochlorococcus_phage	1.1e-08	43.0
WP_081124791.1\|2931102_2933073_-	S9 family peptidase	NA	NA	NA	NA
WP_070325983.1\|2933379_2934312_-	homoserine kinase	NA	NA	NA	NA
WP_034282619.1\|2934308_2935370_-	threonine synthase	NA	NA	NA	NA
WP_081124792.1\|2935366_2936671_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_081124793.1\|2936894_2937863_-	D-glycerate dehydrogenase	M1HFV8	Paramecium_bursaria_Chlorella_virus	1.2e-21	26.3
WP_081124794.1\|2937937_2938960_-\|coat	spore coat protein YutH	NA	NA	NA	NA

DBSCAN-SWA_10

3140182 : 3149394

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081124872.1\|3140182_3141160_+	D-glycerate dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	3.2e-17	27.8
WP_024423547.1\|3141535_3142024_+	ribonuclease	NA	NA	NA	NA
WP_081124874.1\|3142077_3142821_-	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_081124875.1\|3142859_3143117_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_024423550.1\|3143143_3144094_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.6e-50	37.5
WP_024427676.1\|3144111_3145071_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.8e-63	40.4
WP_098677521.1\|3145071_3145995_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.5e-05	26.3
WP_034281027.1\|3145998_3146463_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_087976242.1\|3146820_3147771_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.8e-86	53.6
WP_081124876.1\|3148005_3149394_-	C40 family peptidase	A0A0A0RVE6	Bacillus_phage	2.8e-27	54.3

DBSCAN-SWA_11

3390265 : 3435843

Escherichia_phage(33.33%)

protease,tRNA,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034281247.1\|3390265_3391939_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003215400.1\|3391935_3392358_-	DUF1934 family protein	NA	NA	NA	NA
WP_034281249.1\|3392904_3393777_-	agmatinase	NA	NA	NA	NA
WP_025093862.1\|3393846_3394677_-	spermidine synthase	NA	NA	NA	NA
WP_081124988.1\|3394901_3396971_+	penicillin-binding protein	NA	NA	NA	NA
WP_024423769.1\|3397095_3397614_-	hypothetical protein	NA	NA	NA	NA
WP_081124990.1\|3397626_3398289_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003214939.1\|3398396_3398582_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_081124992.1\|3398632_3399445_-	peptidase M84	NA	NA	NA	NA
WP_034281252.1\|3399669_3400170_-	YwgA family protein	NA	NA	NA	NA
WP_007497716.1\|3400200_3401502_-	HD domain-containing protein	A0A1V0SGM3	Hokovirus	1.6e-24	30.3
WP_003215259.1\|3401672_3401894_-	DUF1450 domain-containing protein	NA	NA	NA	NA
WP_081124994.1\|3402136_3402946_+	RsfA family transcriptional regulator	NA	NA	NA	NA
WP_034281254.1\|3402979_3403213_-	hypothetical protein	NA	NA	NA	NA
WP_081124996.1\|3403209_3405486_-	glycosyltransferase	NA	NA	NA	NA
WP_041115487.1\|3406129_3406975_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_081124998.1\|3407101_3407497_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_061110207.1\|3407516_3407780_-	hypothetical protein	NA	NA	NA	NA
WP_034281259.1\|3407849_3408122_-	hypothetical protein	NA	NA	NA	NA
WP_024426385.1\|3408343_3408676_-	hypothetical protein	NA	NA	NA	NA
WP_081125000.1\|3408698_3410393_-\|transposase	transposase	NA	NA	NA	NA
WP_034281261.1\|3410404_3410683_-	YwqI/YxiC family protein	NA	NA	NA	NA
WP_034281454.1\|3410687_3411086_-	DUF5082 domain-containing protein	NA	NA	NA	NA
WP_034281262.1\|3411261_3411528_-	hypothetical protein	NA	NA	NA	NA
WP_041115475.1\|3411541_3412876_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_041115473.1\|3412919_3413798_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_080769778.1\|3413809_3414481_-	S-adenosylmethionine--2-demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_041115469.1\|3414631_3415483_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_024423792.1\|3415613_3416585_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_034281267.1\|3416825_3417596_+	heme-dependent peroxidase	NA	NA	NA	NA
WP_155889694.1\|3417736_3418705_-	abhydrolase domain-containing 18	NA	NA	NA	NA
WP_034281269.1\|3418827_3419307_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_081125002.1\|3419452_3420685_+	MFS transporter	NA	NA	NA	NA
WP_024423797.1\|3420839_3421442_+	bacilysin biosynthesis protein BacA	NA	NA	NA	NA
WP_034281271.1\|3421443_3422151_+	cupin domain-containing protein	NA	NA	NA	NA
WP_081125004.1\|3422147_3422909_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.0e-23	32.0
WP_034281273.1\|3422924_3424346_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_081125006.1\|3424360_3425557_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_081125008.1\|3425570_3426368_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_034660371.1\|3426466_3426922_-\|coat	spore coat protein	NA	NA	NA	NA
WP_034281275.1\|3426914_3427769_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.0e-35	36.6
WP_081125010.1\|3427772_3428738_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	5.5e-78	45.6
WP_081125012.1\|3428734_3429475_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	3.6e-45	41.2
WP_081125014.1\|3429477_3430506_-\|coat	spore coat protein	NA	NA	NA	NA
WP_061110221.1\|3430502_3431243_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_070326146.1\|3431232_3432357_-\|coat	spore coat protein	A0A1B1IVE2	uncultured_Mediterranean_phage	8.4e-22	29.5
WP_081125016.1\|3432358_3433234_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_081125018.1\|3433230_3434409_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_081125020.1\|3434430_3435843_-\|coat	spore coat protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection