CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013922	Staphylococcus xylosus strain S170, complete genome	3 crisprs	cas3,csa3,DEDDh,DinG,WYL	1	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013922_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013922_1

539174-539262

Orphan

Consensus_repeat	Method
AGCGTCAGTATCTTGTACAGTAGAAGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013922_1

>merge|NZ_CP013922|1|539174-539262|CRISPRCasFinder
AGCGTCAGTATCTTGTACAGTAGAAGTAGTATCAGAATTGTCTGTGCTATCCTCTTGAACAGCGTCAGTATCTTGTACATTAGAAGTAG

>NZ_CP013922|1|1|539174-539262|CRISPRCasFinder
AGCGTCAGTATCTTGTACAGTAGAAGTAG	TATCAGAATTGTCTGTGCTATCCTCTTGAAC
AGCGTCAGTATCTTGTACATTAGAAGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013922.1\|WP_017724109.1\|547586_547877_-\|cytochrome-aa3-quinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|225667
NZ_CP013922.1\|WP_081224915.1\|534279_535284_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_CP013922.1\|WP_029379103.1\|547873_548479_-\|cytochrome-aa3-quinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131943
NZ_CP013922.1\|WP_029379115.1\|530418_531225_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP013922.1\|WP_029379118.1\|526279_527218_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP013922.1\|WP_029379114.1\|531217_532036_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP013922.1\|WP_081224914.1\|528749_530432_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
NZ_CP013922.1\|WP_017724104.1\|541281_541752_-\|DUF2538-family-protein	unknown	unknown	gnl\|CDD\|287742
NZ_CP013922.1\|WP_029379119.1\|525636_526206_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013922.1\|WP_029379110.1\|535491_535914_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013922.1\|WP_029379112.1\|532992_534156_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|236075
NZ_CP013922.1\|WP_029379101.1\|550456_551578_-\|cytochrome-aa3-quinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|273621
NZ_CP013922.1\|WP_081224919.1\|546500_547409_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
NZ_CP013922.1\|WP_081224918.1\|543535_545197_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP013922.1\|WP_029379108.1\|540788_541211_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP013922.1\|WP_029379102.1\|548468_550457_-\|cytochrome-aa3-quinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131928
NZ_CP013922.1\|WP_081224913.1\|527404_528757_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|273127
NZ_CP013922.1\|WP_029379113.1\|532369_532828_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013922.1\|WP_029379105.1\|545216_546392_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP013922.1\|WP_081224917.1\|541773_543090_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235

Protein	Function_ID	Function_description	E-value
NZ_CP013922.1\|WP_017724109.1\|547586_547877_-\|cytochrome-aa3-quinol-oxidase-subunit-IV	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	1.69925e-22
NZ_CP013922.1\|WP_081224915.1\|534279_535284_-\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	8.50237e-60
NZ_CP013922.1\|WP_029379103.1\|547873_548479_-\|cytochrome-aa3-quinol-oxidase-subunit-III	gnl\|CDD\|131943	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	2.07313e-102
NZ_CP013922.1\|WP_029379115.1\|530418_531225_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.06376e-106
NZ_CP013922.1\|WP_029379118.1\|526279_527218_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	1.4252e-128
NZ_CP013922.1\|WP_029379114.1\|531217_532036_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP013922.1\|WP_081224914.1\|528749_530432_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
NZ_CP013922.1\|WP_017724104.1\|541281_541752_-\|DUF2538-family-protein	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	7.08769e-97
NZ_CP013922.1\|WP_029379119.1\|525636_526206_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.99398e-11
NZ_CP013922.1\|WP_029379110.1\|535491_535914_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.11648e-18
NZ_CP013922.1\|WP_029379112.1\|532992_534156_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|236075	PRK07683, PRK07683, aminotransferase A; Validated.	3.57199e-169
NZ_CP013922.1\|WP_029379101.1\|550456_551578_-\|cytochrome-aa3-quinol-oxidase-subunit-II	gnl\|CDD\|273621	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b). [Energy metabolism, Electron transport].	2.48072e-122
NZ_CP013922.1\|WP_081224919.1\|546500_547409_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
NZ_CP013922.1\|WP_081224918.1\|543535_545197_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP013922.1\|WP_029379108.1\|540788_541211_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.28754e-16
NZ_CP013922.1\|WP_029379102.1\|548468_550457_-\|cytochrome-aa3-quinol-oxidase-subunit-I	gnl\|CDD\|131928	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	0
NZ_CP013922.1\|WP_081224913.1\|527404_528757_+\|isochorismate-synthase	gnl\|CDD\|273127	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases. This enzyme interconverts chorismate and isochorismate. In E. coli, different loci encode isochorismate synthases for the pathways of menaquinone biosynthesis and enterobactin biosynthesis (via salicilate) and fail to complement each other. Among isochorismate synthases, the N-terminal domain is poorly conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.35914e-122
NZ_CP013922.1\|WP_029379113.1\|532369_532828_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.18063e-17
NZ_CP013922.1\|WP_029379105.1\|545216_546392_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.7972e-40
NZ_CP013922.1\|WP_081224917.1\|541773_543090_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.55251e-71

>NZ_CP013922.1|WP_029379110.1|535491_535914_+|MarR-family-transcriptional-regulator
MYKQLEQLITLTGNDLNLVSRRFGQRTDLTSEQLEMLRILYNYEVLSQYDLTMKINKEQSIVSRWIKKLCHMGYITSKQSNKDMRCKDLMVTDKAKELVQQINEVRVALIEARCQNLTSKDIENLNQLLYKLNVHQVYMH
>NZ_CP013922.1|WP_081224915.1|534279_535284_-|acyltransferase-family-protein
MSQLKERDYFFDNARAVLIFLVVFGHLLQPYTEASPHLSSLYLTIYSFHMPGFLFISGYFAKKAGQAGYLEKVSKKLLVPYVIFFGFFSVYYYLTGKEDSVQFDPFDPVFALWFLLTLFFFHVILVIVKDYKPYYVLPIAVIISIFAGYSENIDNYLSFSRTIMFFPIFYIGYLFTNKHTQLLRNKKFLPIAIITLLAFYVIYTYHPINSNWLLGDSPYMSLEGKLDFYSPIKRLLLYFIVLISMFAFFNLIPEKEKFFTYIGRRTMHVYLLHGLFIGFIRGFAIYPFKDHISILTYLYLVIVTSIIVYILTTRLVSKWTNPIINLQSPYKFKG
>NZ_CP013922.1|WP_029379112.1|532992_534156_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQLSLNNNSKHLTAPSIRQFSNRIKGIEDCINLTIGQPDFPMPKEVKAAYINAINEDQTKYSHNKGLIETRHAVSQYFEQRYGFTYNSEEIIITNGASEALDTALRSIIDEGDEILVPGPVYAGYIPLIKTLGGIPVYIDTTISDYKVTPEALEKHITKNTKAILLNYPTNPTGVILSYNEVQAIANILKDKEIFIISDEIYAENTFTGKHTSFAEFEVIRDQLLLVGGLSKSHSATGIRIGFLIGPEYLIEKLTFMHAYNCICANVPAQIACIAALNEGLEAPQYMNEAYIERRDFLINKLESMGFELDAKPEGAFYIFPSIKNFTDNDFDFCVDVLENAHIAIVPGSAFTDLGKGHVRISYAYELDALKEAMRRLEQYLALNYNS
>NZ_CP013922.1|WP_029379113.1|532369_532828_+|MarR-family-transcriptional-regulator
MTTDMYDQMRKEMCYLFYITSKDIVNRFNKYLKRYDISFPNYIVLLYIENEIPVYIKTLCDELYLDSGTISPIIKRLEKKELIRRLRTEDDERRVKVMLTTKGIKLKEEFSKISEEVIQQFDMEKEDSLAYYRILRTFAEKNIYTKDESEQL
>NZ_CP013922.1|WP_029379114.1|531217_532036_+|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MTRQWETIKEYKEIKYEIYDGIAKVTINRPEVRNAFTPNTVQEMIDAFTRARDDQRVSVIILTGEGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVRGYSIGGGHVLSVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYDAQQALDMGLVNTVVPLDQVEDETVQWCQEMKQHSPTALRFLKAAMNADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP
>NZ_CP013922.1|WP_029379115.1|530418_531225_+|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MLNYKFYQSKCDTDELLVMLHGFISDQQAFSKHVHVLQEKLNILTVDLPGHGQDDSDINQTWNFPFITDQLDELLKTFQSYQLFLHGYSMGGRIALYYGIEGQVALAGLIIESTSPGIKELEDRNERQLVDQARAKVLEIAGLEIFVNDWEKLPLFYTQHELDKSIKKEIRDMRLRQNPLRLAKALRDYGTGQMPNLWPKLKEIKVPTCIIVGVLDGKFCKIAKQMETMIHNSELNEVEQSGHTVHVEEFAEFDRIVLGFIHKEEQND
>NZ_CP013922.1|WP_081224914.1|528749_530432_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MNNHTDALTKQVFTFVSELYAYGIREVVISPGSRSTPLAIAVEAHPKLKSWIHPDERSAAFFAMGLMKGSERPVAILCTSGSAAANYTPAVSESSLSHLPLVVLTSDRPHELRNIGAPQAINQTNMFQNYVQYQFDFPIVDTNEAEDFMTKTVKFQLQKASQFLYGPHRGPIHLNLPFREPLIPNMEKVEWLTSDMKILPHYQKTTSLNEISSIIKKSKGLIIVGDMQHQDIDQVLTFSTIHDVPILADPLSQLRREHHPNVVTSYDLLFRAGLQLDIDFIIRVGKPVVSKKLNQWLKETEAFQILIQNNDKPDAFPITPHVSYEMSANDFFRQLSETPIVERKRWLEKWQTLEKHAIVEIRDYVRTATDEAAYVANVLDKLTTSDALFVSNSMPIRDVDNLFIDCDAEVFANRGANGIDGVISTALGMAVHKKVTLLIGDLAFYHDMNGLLMSKLNDINLNIVLLNNDGGGIFSYLPQKESAEDYFERLFGTPTGLNFEHTALLYDFAFDRYESIEAFKYADLSKFGAHIYEIITQREENKQQHLKLYKKLSDIVNVKL
>NZ_CP013922.1|WP_081224913.1|527404_528757_+|isochorismate-synthase
MTFDVKESEIVEAVYESNHTWVSVEAKLNYELDPTILFHITEDCAGDRFYFKKNDNETSFFGYHAITRFKNDFENKQSIFREWEKYKNDIELIHPNSDKHHLKICGGFQFSTHKSGDEWREFGINHFILPEVLVTMEQGYTYITYTVKADQFEIGTFVSIIDKLTQTNIYPDFEIGDIKRIEDIYKDEWRDLVKDTIDILDENKKIVLARKRLIIFDKQIKIPYILKKASQGEHNSYLFILESQDSVFFSQTPEQLMEINDEILSTKAVAGTIKRTHQGELDNENIQAFLNDEKNLNEHRFVVESILNDISPYVEDVAYNEEPQILTNDHLYHLYTKIKGQLKYESYIGLLDNLHPTPALGGYPKVEALEYIEQNEFGTRGLYGAPVGYIDMYDNCEFIVAIRSMLIKNNQATLYAGCGIVSDSDADSEVEETAVKFNPMMKALGVEEYE
>NZ_CP013922.1|WP_029379118.1|526279_527218_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MASQYQQYSTVKKYWQLMRPHTLTAAVVPVLVGTATSKIFILGSENQLNLSVFLAMLIACLLIQAATNMFNEYYDFKKGLDDHTSVGIGGAIVRNGMSPKLVLNLAIAFYIIAAILGIFIAIQSSFWLLPIGLVCMAVGYLYTGGPFPISWTPFGELFSGVFMGMIIILISFFIQTGNLQSLVVWISIPIVITIGLINMANNIRDRVKDKESGRKTLPILLGKNNSIRFLALMYIVAYILVIYITFFQPGGSIFYLLALLSFPMPIKAVRRFKKNDTPQTMMPAMAATGKTNTFFGLLYALGIYISAILGGI
>NZ_CP013922.1|WP_029379119.1|525636_526206_+|GNAT-family-N-acetyltransferase
MIRKAKPSDTPKIAELCYIIWSELDIQMVEDIDKSRLLKIMEQSMIEVPYRGHYSNTWVYEIEGEVAGCLIAYPGDKEIALEQAWLDMDLDDDIRAYGTPMPMKEANDDEWYIETVATFPQYRGRGVATQLVQHVIEAYSDKKWSLNCDVHNDGALYVYKKLGFQIVSEFDLYGHMHYHMILPISDKKQ
>NZ_CP013922.1|WP_029379108.1|540788_541211_-|GNAT-family-N-acetyltransferase
MFEIVTTQNMMEEAHNIRKKVFVEEQGVPLENEIDQYETIATHVIGYDQNNVPFATGRLRPIANGVKVERVAILASHRNKGYGKLLMGFLETVAINKGDEKLMLNAQCHAQSFYESLGYESFGEIFMEENIKHIAMSKII
>NZ_CP013922.1|WP_017724104.1|541281_541752_-|DUF2538-family-protein
MSRKTYDKLNQINGMFNVLEQQLIHSKDMALFRNEFFYVNHEHRENYEALRIYYKDSDNNPIVDGACYIVALPEIFEKVDVFESELPFTWVYDQNGITETMKQISVPIQYLIAAALEVTDVNLFKPSGFAMGMNNWNIAQMRIFWQYTAIIRKEAL
>NZ_CP013922.1|WP_081224917.1|541773_543090_-|LCP-family-protein
MNKFLKYFLIFLSLLLVVVPVIFAVILLKSSQGAFEHSYNDQDSARQSNIRESKVDPSKDPISILFLGIDDNSGREKNGQSTEQSRSDAMIFSTLNTEKEQIRMLSIPRDTVSYIPKVGYYDKIAHAHAYGGPKSSMDSVEATLNVPVDYYVRINMEAFVDAVNELGGIEYDVPYDIDEPNTDDSGKIKVKKGHQNLNGDEALAVARTRHQDSDLKRGQRQMDLIKKLFAKAQKADSISKLDDVVEIVGKNAKHNLSYKEIKVLATSYLKDDIDIKSTQLEGKDDYLNGIYYYNPDIKNIQDTSNLLRDDLELPKIKDKLEFLNQRVIDFYGTLIPQTEIDSSLLRKSQNDSTSDDDNQSSDSNATDSNNQENNNNNNDNSQQPEANQYENQQDNSNQQDNSNQQNSEQNTQQQIDPNQQQPDPNQQPNSQETPTNQY
>NZ_CP013922.1|WP_081224918.1|543535_545197_+|phospho-sugar-mutase
MKQAWLEKIDESLVKEFYQLQTEEEKNEGFETTLSFGTAGIRSTFGLGPGRLNAFTVRKVALGLAQFLKNKVSIEPSVVIHFDTRLLSKEFSREMASVLAENGVNTIVSENYKSTPELSFAVRELNVSAGVMITASHNPKNYNGIKIYDDHGGQLLPEASEVLSSYINSIESPLLIEKGDFETLLNEEKIQLMSNEVTDKYKAEVKSLVGTIEEKDAKVILTSLHGTSLPLMSDILSELDYHNYVIEENQSKPDGHFPTIAIANPEDEDAFALGKKLADETDAQLIIATDPDADRLGFIERYGDNDYRYFNGNEIGLLFMKLRFQDLVESDEPQYIIKSIVTSELAERLASSLDVEVANVLTGFKFISDLIEKNDNTSNKQLLLAFEESHGYLAKPISRDKDAIQMVPLLIKYKNLLNKNGLTFKDTINDIYQNIGEFKDRTIAPSFEGSKGNEKISKIMSQFRNKDIDSICGMDVKQIEDYQIGKIRNVKEGTTESLSLPNTNLIRFIFDKGFIALRPSGTEPKIKLYFSLNVNDIDAITGQFEKDYINHID
>NZ_CP013922.1|WP_029379105.1|545216_546392_+|serine-hydrolase
MTTKKLKRVTIILTILLVAITFLIIYKHYQRYNQEYNTTKTYEETSKDHKKIGELKTVVDSNNHDIEEINRYLEQTKFNGTAAVFENGQLKLNKGYGMKNFKEDEKNRADTLYLIGSSQKFTTGLMLKQLVNEKKLNMNDPVTKYLPWFKTAQPITLNQLMQHKSGLYKYSASPQYKSLDEAVHAIQEKGIEPKYYNKNRYNDANYLVLSRVIEEATSKSYVKNFENRLANPYNLNFTAFFNDKDYRKNMAIGYKKDKASSNPVKQTPNILDQYYGAGNLFMAPYDMGQLILSLQKNEIFDDKITQPLLHESLTSQYPEPYRYGFYSLPDKNRINGGFFGQVFTAYFNNKYIIVLGTNYENSQTNNEKKIKHIYYDILKQGGPYNIVGQKY
>NZ_CP013922.1|WP_081224919.1|546500_547409_-|ribonucleoside-hydrolase-RihC
MKQPIIIDTDPGIDDAAAISIALNHPAFDLRMITTVNGNVGIEKTTANALKLKQFFSSNVPIHRGASQPLLSNIVDASTVHGESGMNGYDFPEPNYNDLTSVHAVEAMYKELKTNEKPVTLIPIGPLTNIALLLSTYPKAKDYIKEIVFMGGSAGRGNITPSAEFNIYCDSEAAQIVFNSGLPLTMVGLDVARSSTLSHSTVNELQALNQTGYMLHHLFKHYKGDDFEKGINVYDVYTVLYLLHPEKFEVEEADVQVETNGTLTKGATVTDFKSAFPNCSVVMSIEPKVFKEIFIDALKYCK
>NZ_CP013922.1|WP_017724109.1|547586_547877_-|cytochrome-aa3-quinol-oxidase-subunit-IV
MNTIVKHTVGFIASIVLTILAVFVTLYTSMALNAKITIIFGFAFIQAAVQLLMFMHLTEGKDGNLQGFKVVFAIIITLITVIGTYWVMQGGHSSHL
>NZ_CP013922.1|WP_029379103.1|547873_548479_-|cytochrome-aa3-quinol-oxidase-subunit-III
MSHDANTIDQRSHEGNLNRLGFWIFLTAEFSLFGTLFAALLTLQHGGDYAGKMTTELFELPLILIMTFALLISSYTCGIAIYYMRKEKEKLMMIWMIITVLLGAVFVGFEIYEFAHYVHEGVNLTIGSYWSSFFILLGTHGAHVSLGIVWIICLLIQVAMRGLNKDNAPKLFIVSLYWHFLDVVWIFIFTAVYMIGMVFSG
>NZ_CP013922.1|WP_029379102.1|548468_550457_-|cytochrome-aa3-quinol-oxidase-subunit-I
MNFPWDQLLVQGNWMITMAQIGAPFAVIAVIAVISYFKLWKYLYREWFTSIDHKKIGAMYLICAVLMFVRGGIDALMMRTQLAIPDNTFLEGNHYNEVFSTHGVIMIIFMAMPFIFGLWNVVIPLQIGARDVAFPVLNNVSFWLFFSGMILFNLSFIVGGSPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGIGTLMTGINFFVTILRCKTPTMKFMEMPMFTVTTFITSLIVILAFPVLTVALALFTTDRIFDTAFFSVANGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKIFNWLFTLYQGRITFESPMLFALGFIPNFLIGGVTGVMLSMAAADYQYHNTYFLVAHFHYTLVAGVVFACLGALIFWWPKMTGFKLNETLNKWCFWLFIIGFNVCFIPQFILGLDGMPRRLYTYMPEDGWWLLNVISTVGALMMALGFMFLVASIVYSFFKAPREATGDNWDGLGRTLEWSTAAAMPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYTDIHMPNNTPVGFWMGIFFTIGGFFLIFETIIPAVICLLGIFGTMIYRSFQIDHGYHIPASEVAETEKRLRDARIKEREAVSHES
>NZ_CP013922.1|WP_029379101.1|550456_551578_-|cytochrome-aa3-quinol-oxidase-subunit-II
MSKFKSLLLLFGSLILLSGCSNVEVLNPKGPMASDTKFLIMYSIIFMLVIIAAVVILFTVFLYKYRIGNTKESGKMHHNSLMETIWFIIPVIIVIALAIPTVNSLYNYEEKPQKEDDPLVVYATSAGYKWFFSYPEQKIETVNHLTIPKDRPVVFKLQSMDMMTSFWIPQLGGQKYAMTGMTMDWTLTASEEGTFRGRNSNFNGEGFERQTFDVNSVSQSKFEDWVKDAKSKKVLDQDTFDKQLLPTTENKNLTFSGTHLAFVDPAADPEYIFYAYDRYNYVQKDPNFNTKDEMKADVLDKPDKPARKPQITNANYERHGMKAMILGNNEPYDSEFKDNESHNMDEMEKISEGVKDEKASKIEKKDHENGGGH

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Crispr_ID: NZ_CP013922_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013922_2

1387197-1387283

Orphan

Consensus_repeat	Method
TTTTATGTGATTTATTTCACAAATTAAATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013922_2

>merge|NZ_CP013922|2|1387197-1387283|CRISPRCasFinder
TTTTATGTGATTTATTTCACAAATTAAATATAACAGGGTCTATAAAAAATTGCAATGTTTTTGTGATTTATTTCACAAATTAAATAT

>NZ_CP013922|2|2|1387197-1387283|CRISPRCasFinder
TTTTATGTGATTTATTTCACAAATTAAATAT	AACAGGGTCTATAAAAAATTGCAAT
GTTTTTGTGATTTATTTCACAAATTAAATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013922.1\|WP_029377010.1\|1376122_1377760_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP013922.1\|WP_017722183.1\|1384054_1385008_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP013922.1\|WP_029377001.1\|1388478_1389480_+\|proline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223580
NZ_CP013922.1\|WP_029377011.1\|1375427_1376126_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP013922.1\|WP_029377008.1\|1379511_1379823_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP013922.1\|WP_029377004.1\|1385660_1386062_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP013922.1\|WP_029376996.1\|1393587_1395051_-\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|226906
NZ_CP013922.1\|WP_029377006.1\|1382775_1383945_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP013922.1\|WP_029376994.1\|1396570_1397425_-\|N-acetylglucosaminidase	unknown	unknown	gnl\|CDD\|226656
NZ_CP013922.1\|WP_029376995.1\|1395221_1396148_+\|osmoprotectant-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270326
NZ_CP013922.1\|WP_029377000.1\|1389677_1390136_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP013922.1\|WP_017722196.1\|1397589_1397814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013922.1\|WP_029376998.1\|1391341_1391974_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP013922.1\|WP_029377002.1\|1387387_1388212_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP013922.1\|WP_029377007.1\|1379842_1382257_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP013922.1\|WP_029377009.1\|1377889_1379164_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP013922.1\|WP_029376997.1\|1391980_1393024_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP013922.1\|WP_029377003.1\|1386212_1387169_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP013922.1\|WP_029376999.1\|1390149_1391331_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP013922.1\|WP_029377005.1\|1385004_1385565_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377744

Protein	Function_ID	Function_description	E-value
NZ_CP013922.1\|WP_029377010.1\|1376122_1377760_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.70418e-119
NZ_CP013922.1\|WP_017722183.1\|1384054_1385008_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP013922.1\|WP_029377001.1\|1388478_1389480_+\|proline-dehydrogenase-family-protein	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	4.90906e-63
NZ_CP013922.1\|WP_029377011.1\|1375427_1376126_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.37389e-90
NZ_CP013922.1\|WP_029377008.1\|1379511_1379823_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	9.68685e-23
NZ_CP013922.1\|WP_029377004.1\|1385660_1386062_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	4.64171e-17
NZ_CP013922.1\|WP_029376996.1\|1393587_1395051_-\|FAD/NAD(P)-binding-protein	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	1.08421e-77
NZ_CP013922.1\|WP_029377006.1\|1382775_1383945_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.62458e-83
NZ_CP013922.1\|WP_029376994.1\|1396570_1397425_-\|N-acetylglucosaminidase	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	8.1549e-103
NZ_CP013922.1\|WP_029376995.1\|1395221_1396148_+\|osmoprotectant-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270326	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic substrate-binding protein OpuCC of the ABC transporter OpuC (where Opu is osmoprotectant uptake), which can recognize a broad spectrum of compatible solutes, and its paralog OpuBC that can solely bind choline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42501e-154
NZ_CP013922.1\|WP_029377000.1\|1389677_1390136_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	3.84783e-89
NZ_CP013922.1\|WP_029376998.1\|1391341_1391974_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.58977e-92
NZ_CP013922.1\|WP_029377002.1\|1387387_1388212_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.34741e-64
NZ_CP013922.1\|WP_029377007.1\|1379842_1382257_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP013922.1\|WP_029377009.1\|1377889_1379164_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP013922.1\|WP_029376997.1\|1391980_1393024_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.02845e-94
NZ_CP013922.1\|WP_029377003.1\|1386212_1387169_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	2.84195e-180
NZ_CP013922.1\|WP_029376999.1\|1390149_1391331_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP013922.1\|WP_029377005.1\|1385004_1385565_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	1.81746e-68

>NZ_CP013922.1|WP_029377003.1|1386212_1387169_-|L-lactate-dehydrogenase
MEYIKSNKVVLIGDGAVGSSYAFALVAQGVADELVIIDLAEEKVKGDVMDLNHAAPYGGSPIKIKAGSYKDCDNADIVVITAGAAQKPGETRLDLIEKNTKIFKNIVSEVMNSGFDGIFLVATNPVDVLTYVTREVSGLPKEKVIGSGTILDTARFKYELAEEFGVSDRSVHGQIIGEHGDSELAVWSQANIAGQPLYQLLKDDPERQHRIEEIFVNTRDAAYDIIQAKGATYYGIAMGLVHITKAILNNQNLVLTVSSYLEGEYDQKGVYVGVPTKINRQGAVKVFEIPLSEEEEKLFNNSVNILKEMQNKISHLIA
>NZ_CP013922.1|WP_029377004.1|1385660_1386062_-|MarR-family-transcriptional-regulator
MGKTFADKVDGVLQLESVLKEIDDIFAKVQKQYKMSKEEILILLTLWKEGSMTLKEMDDFVHIKSYKRTRTYNDLVEKTWIIKERPQNDERTVIIHFNEDLKDQRESLLNFFKEEIDGKSTSIQNSLKSIINL
>NZ_CP013922.1|WP_029377005.1|1385004_1385565_+|class-I-SAM-dependent-methyltransferase
MKLERILPFAKSLIKQHTHEESTVIDATCGNGNDTLFLAQHVTSGHVHAFDIQEAAILNTQQKTKDFDNVTLHHASHSEVKKYIPTESHGTVDAAIFNLGYLPKGDKSVVTLPNSTIAAIEAIFDILSAEGIIILVIYPGHEEGKIERDAVINYLKNFDQNKAHILQYQFINQQNDPPFICAIEKR
>NZ_CP013922.1|WP_017722183.1|1384054_1385008_+|TIGR01212-family-radical-SAM-protein
MGQFFPYAFENKRYHTWNYHLKNKFGQKIFKVAIDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRVDPIEVQFRQIKDRMHEKWHDGQYIAYFQAFTNTHAPVEVLREKYETALKEPGVVGLSIGTRPDCLPDDVVEYLAELNERTYLWVELGLQTIHQETSDLINRAHDMETYYEGIAKLRKHNINICTHIINGLPGEDYNMMMETAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGMLEFMSQEEYTNLVCDQLEIIPKEMIVHRITGDGPIDLMVGPMWSVNKWEVLNEIDNELARRASYQGKFFESTVKS
>NZ_CP013922.1|WP_029377006.1|1382775_1383945_-|MFS-transporter
MNMPKSVCWLVIGMALNITGSSFLWPLNTIYMNEQLDKSLTMAGLVLMINSFGMVIGNLLGGNLFDKLGGYRTIMIGTVICLMSTTLLNFYHGWPWYAVWLVALGFGGGMIIPAIYALAGAVWPKGGRQTFNAIYLAQNLGVAIGAASGGFVAELSFNYIFIANLLMYVAFAIVAVTQFNIKLDVKVKSNDAMSLLSKAYRPQFIALSLLCVMFSICWVAYIQWESTIASFTQEINVSMSQYSLLWTVNGIMILVAQPLISPVVRLLKGNLKYQMLVGIIIFILSFFVTSFAEQFSVFMVGMIILTLGEMFVWPAVPTIANQLAPSGKEGSFQGYVNSAATVGKAFGPLIGGVVVDTFNMQAMFLSMIFLLVIALIFLMIYDKKLSKEI
>NZ_CP013922.1|WP_029377007.1|1379842_1382257_-|leucine--tRNA-ligase
MNYNHNEIEKKWQDYWEEYKTFKTSDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKENIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVVDGVSERGGHPVYRRPMKQWVLKITEYADRLLEDLDDLDWPESLKDMQRNWIGRSEGASVTFEVANLNEEIEVFTTRADTIYGASFLVLSPEHELVNKITTEDKREAIEAYQKEAAKKSDLERTGLSKEKSGVFTGAYAINPLSGEEVPVWIADYVLSTYGTGAVMAVPSGDQRDYEFAKAFDLPIIEVIEGGDMTQEAFTGDGPHINSGELNGLYNEAAIEKAVELLENKNAGSRKVNYKLRDWLFSRQRYWGEPIPVIHWEDGSMTTVPEDELPLLLPETDEIKPSGTGESPLANIDEFVNVVDEATGMKGRRETNTMPQWAGSCWYYLRYIDPNNDKMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLFDLGVVPTKEPFQKLYNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSENGLDGSRRFLDRIWRLLVTENDLISSKVVNTNSKALDKSYHQTVKKVTEDYNSLNFNTAISQLMVFINDCYKAEEIYKPYIEGFIKMLAPIAPHISEELWARLGHEETITYQPWPSYDESLLVDDEIEIVIQVNGKVRAKVNMPKDISKEAMEEVALGNENVKSEIAGKDIKKVIAVPKKLVNIVAK
>NZ_CP013922.1|WP_029377008.1|1379511_1379823_-|rhodanese-like-domain-containing-protein
MESITIDELKSEILDANPVNIVDVRTDEETAMGIIPGAKTIPMNKIPENLNQFNENDTYYIICKVGGRSAQVVQYLEQNGVNAVNVEGGMDAWGDEGLELKSV
>NZ_CP013922.1|WP_029377009.1|1377889_1379164_+|NAD(P)/FAD-dependent-oxidoreductase
MYQTIIIGGGPSGLMAAAAASQSSNSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYDEIIKNIPGNGKFLYSPFSVFDNESIIHFFESRGVSLKEEDHGRMFPVSNKAQDVVDALIHTLQQNKVEVKEEATVASISYTDNQTFQVSLNDQQSFESQSLVIATGGTSVPQTGSTGDGYKFAEQLGHSITELFPTEVPITSAEPFIKNKRLKGLSLKDVALSVLKKNGKTRITHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKRQEIQMQIDAFPELTQNELELKIRSLLEDTPDKYIKNSLHGLIEERYLLFIIEQADIPDDLTAHHISNAQINNIVALLKGFTFYVNGTLSIEKAFVTGGGVSLKEIQPKTMMSKIIPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGTNASEFVSTTQTL
>NZ_CP013922.1|WP_029377010.1|1376122_1377760_-|polysaccharide-biosynthesis-protein
MSESKELVRGTFLITLSILITKVLGVIYIIPFYSIIGGEEKLAPFNYAYTPYNIAIAIATAGVPLAASKYVSKYNALGAYKVSEKLYKSSFIVMTITGFIGFFILYLLAPSIASITLAHESGAKGGWSVDDITWIIRIISMVVIFIPLLATWRGVFQGYKSMGPTAVSEVIEQIARILFILIGSYLVLNVFNGSVLQANGVATFAAAIGAVAGIFTLWYYWRKRKPNIEKMVATDVSGISVSYGKMYKEIISYSIPFVIVSLNFPLFNLVDQFTHNGALDLAGVPSRLHDYFFTILNMTTNKIVMIPTSLSAGFAVSLIPFITKTYESGELSEMHRQIRTSLGVLMYITVPASLGIMALALPLYTVFYSYNVDGSQLLFYYAPVAILIGLLSVTASMLQGIDKQKLTVFVILSAVVLKVILNTPLIMAFHTAGAILSTAIALLFAVLCNFYILKKYAKFDFSETWLHFGKIFLYGLIMMIVVELSSFILQMMISPESKIGSLAILIISVVIGMIIYGSITMKTKLADQFLGEMPNKLRRKLGIIK
>NZ_CP013922.1|WP_029377011.1|1375427_1376126_-|rRNA-pseudouridine-synthase
MRLDKFLANMGVGTRTEVKQLLKKKQVTVNDNIETSPKRQLNPDVDVVTVNDTRIQYIDKVYLMLNKPKGYISATEDDKQQTVIDLVDEYKYLNVFPVGRLDKDTEGLLLITNDGQFNHDLMSPTKHVPKTYEVVSEKNITKNDINAFKVGIELNEGFAKPAELMKSDEMYKSFVTIHEGRYHQVKRMFHAINNEVIELKRISIGDLHLDLTLAPGEYRHLNQQDFKSLGLK
>NZ_CP013922.1|WP_029377002.1|1387387_1388212_-|alpha/beta-hydrolase
MWKWETENEAKGIVVIAHNMLEHTGRYAYVITMLRRNGYHVIMGDLPGQGQTSRSNKGQIDNFDVYHEHILEWIRIANEYKLPTYVLGVGLGGLIVLNMLEKVEVPIEGLMLLSPLLEFKKSNKTRKDKIISNIGKIAKDTRFKVGITVEDLTRNSEVIDETNNDQLMLQKVTYHWYKQIIEIMKETVNHLKDVKSLPLLLMYGTEDKVADVTAMDLIKEKIITEELYFKAWDGLYHEIHNEPERDEVMRYILAFLNNSSSNNGFIVHDENEVS
>NZ_CP013922.1|WP_029377001.1|1388478_1389480_+|proline-dehydrogenase-family-protein
MPIVKNFFIGLSNNPLLNKTAKEIGPMLGANKVVAGNTITALVDTIERLNNKGITVTVDCLGEFVLTEGEAIQAKDQIIEVMYAIYNHNLDGHMSIKLSQLGSEFDTDLAYRNLREILLKANEFDNMHINIDTEKYDSLFDITQVLDRLKGEFKNVGTVIQAYLYKADALIDKYPELRLRMVKGAYKESDTIAYQTKEEIDKNYIRLMEKRLLNSKNVTSIATHDDEIIRHMKQFIKDNNIERSQYEFQMLYGFRTDLAEKIAGEGNNFCIYVPYGDDWFSYFMRRLAERPQNLNLMFKEFMKPDILKKVGIVSGAIASFALATTFLYRIFKK
>NZ_CP013922.1|WP_029377000.1|1389677_1390136_-|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLIGSDLKVAIVVSRFNDFITNRLLDGAKDTLIRHEVPEENIDVAYVPGAFEIPLVAKKLAEKSDYDAVITLGCVIRGSTSHYDYVCNEVAKGISKANDVTDTPVIFGILTTENIEQAVERAGTKAGNKGSEAAVSAIEMANLLKEI
>NZ_CP013922.1|WP_029376999.1|1390149_1391331_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MQLDSIDKALTALKNGDSIIVVDDENRENEGDLVAVTEWMHNDTVNFMATYGRGLICAPISSDIAKKLDLNPMVSNNSDVYGTQFTVSIDHVDTTTGISADERMLTARALIDDRVSAADFNKPGHLFPLIAQDNGVLTRRGHTEASVDLAKLTGAKPAALICEIMNDDGTMAKGESLEMFKETHGLVMISIEDLEKYRKSAISKLEAKAKVKMPTEYGVFDMYGFTTSDSDEEIVAIVNGDIKQTENVRIHSACLTGDIFHSQRCDCGEQLEASMKYINEHGGIILYLPQEGRGIGLINKLKAYELIEQGYDTVTANIALGFEEDLRNYENAARILKYFGVESVNLLSNNPKKFESLENYGIDITKRIELVVPTNKYNQDYMDTKKEKMGHLI
>NZ_CP013922.1|WP_029376998.1|1391341_1391974_-|riboflavin-synthase
MFTGIVEEIGTIKKVSTQQSVVNLKIECRTILSDMHIGDSISVNGACLTVVEFDHQSFSVQVIKGTENKTYLNQLTQSAEVNLERAMSGQGRFGGHFVLGHVDEVAKITRIQASDNSKIVTIKPTTKLIKQMVSQGSITVDGVSLTIFQLKEAEFDIHLIPETRKSTILNQKRVGDPVHIETDMLFKYVERIINSNESELSPEKLRAFGF
>NZ_CP013922.1|WP_029376997.1|1391980_1393024_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSHYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNARGGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAVKDTTLPSEGDDILEQAGIEVIFRPQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLRHKHDAVLTGRGTIYADNPQYTTRIEEGKHPIKVILSKTGEIDFNLDIFQLRNEPIWIYTQNKNLKTNIEHVEIIELTDCSIKNILKDLYQRGIGSVLVEAGPTVTSEFLQSKFTNELILYYAPKIIGGSGNYQFFQSESIFNLSEVPQFEIVNSQMLEQNIKLELRKK
>NZ_CP013922.1|WP_029376996.1|1393587_1395051_-|FAD/NAD(P)-binding-protein
MRIAIIGMGTAGVTLLKELVKSDSFSKMNIDVYDNPINMGQGVPFQNDSAELLINLPAAQMSLNLDNHREFYEWYEKQSTFKFSNPEYLPRFIFGHYMKDYLQKFNHKYGNINIIKEEVNEVFIESEIGKTKVTYCVCTSKEIEKCKKYDVVFLTIGTLSYHDPYGLKGIRGYIKTPYPTYNTLDDVQDSDEIAIIGTGLASLDVIRYVTSHHPKLPITVASRKGRLPSVRGEMPDIDFKYITPEKFNEIKRKHFGNVPLDEVIKLFLKDCALHNIDVETLVHRSQDDPIKDLTYDLEHADELGKLQSILELTKENLNWIWNSLSREDQKRFLTNYQPILKENSNPMPPQTARLLIDHINHGTIKIKSELEDVRYNNNKFNFKYKDASVEQFDIVINATGSKTQLADLDGDDQLVLNLENRQVVQAHPLGGIQIVAETNQIISPRYGTLKHMYALGQLTNGINQSRNGVMMIVKQAVNVVDHLLSTK
>NZ_CP013922.1|WP_029376995.1|1395221_1396148_+|osmoprotectant-ABC-transporter-substrate-binding-protein
MKHLKRFLFFILTSTFLLASCDLPGLGGGQSKNTVKISALATSESQIMAYMLKELIEHDTNGETSGTIINNLGSATIQHNALMNGDADISSTRYTGTDLVGVLEQEPITDTNKAMTITKKLFNQKFNQTFFNSYGFENTFAFMVTKETAKKYNLQTVSDLKKIKDKVNVGTDTTWIKRGGDGYAPFQKHYGFGFNSLKPMQIGLVYDALKNNKLDVALGYTTDGRIAAYDLVVLKDDQNFFPPYDASAVAPNKLLKEHPQIKKSISKLDDKINTEQMQKLNYEADGNGKEPAVVAETFLKKHNYFDEK
>NZ_CP013922.1|WP_029376994.1|1396570_1397425_-|N-acetylglucosaminidase
MTKHKKGSILSIIGLLIILGVAAVIVFTMISDQIFFKDVNEQEKVENLKVTLDKASKKQIDNYTSQQVSSKDNKSWRDASSTEIKAAMNSSEFIDSDTQKYQFLELDKYQGIDENRIKRMLIDNPILLKHSDDFLNAAKNKHVNEVYLISHALLETGSAKSELASGVEIDGKKYYNFFGVGALDEDPIKTGSEYAKKHGWDTPEKAISGGANFIHDHFLSNKDQNTLYSMRWNPKNPGEHQYATDIKWAESNASLMANFYKDMKTEGKYYKYFVYKDDEKHKTQ
>NZ_CP013922.1|WP_017722196.1|1397589_1397814_-|hypothetical-protein
MDYAHLNLEHFFAKHNDLDIIKDKSDFVMINNMTNEMMYRDGEIEGAIDLNRYYYKNRSQAASFIIMEYRKSQE

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Crispr_ID: NZ_CP013922_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013922_3

2380748-2380848

Orphan

Consensus_repeat	Method
AAACCATCTGTAACTTGTTGATTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013922_3

>merge|NZ_CP013922|3|2380748-2380848|CRISPRCasFinder
AAACCATCTGTAACTTGTTGATTTCCTGAAATCAACTGTTGTGCAGGCTGTCCTACTGCAGGTTCTAGCTGTTTCAAACCATCTGTAACTTGTTGATTTCC

>NZ_CP013922|3|3|2380748-2380848|CRISPRCasFinder
AAACCATCTGTAACTTGTTGATTTCC	TGAAATCAACTGTTGTGCAGGCTGTCCTACTGCAGGTTCTAGCTGTTTC
AAACCATCTGTAACTTGTTGATTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013922.1\|WP_058625905.1\|2378655_2379222_-\|DUF4064-domain-containing-protein	unknown	unknown	gnl\|CDD\|372544
NZ_CP013922.1\|WP_029378555.1\|2379524_2379977_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP013922.1\|WP_029378557.1\|2382038_2383190_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP013922.1\|WP_029378565.1\|2391317_2391449_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP013922.1\|WP_029379225.1\|2366352_2367840_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP013922.1\|WP_029378558.1\|2383400_2384723_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|274238
NZ_CP013922.1\|WP_081225202.1\|2391551_2392955_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP013922.1\|WP_029378561.1\|2387758_2388310_-\|phenolic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|226010
NZ_CP013922.1\|WP_029379226.1\|2365440_2366025_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP013922.1\|WP_081225201.1\|2390107_2390836_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013922.1\|WP_081225200.1\|2388403_2388949_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP013922.1\|WP_029378560.1\|2386239_2387688_+\|D-xylose-transporter-XylE	unknown	unknown	gnl\|CDD\|182225
NZ_CP013922.1\|WP_029378559.1\|2384728_2386219_+\|xylulokinase	unknown	unknown	gnl\|CDD\|273550
NZ_CP013922.1\|WP_029379228.1\|2363377_2364145_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP013922.1\|WP_081225199.1\|2369605_2377423_-\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|368038
NZ_CP013922.1\|WP_029379224.1\|2367941_2368865_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP013922.1\|WP_029378553.1\|2377742_2378564_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013922.1\|WP_029378563.1\|2389016_2390111_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP013922.1\|WP_037557373.1\|2364347_2365448_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274092
NZ_CP013922.1\|WP_029379227.1\|2364146_2364347_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|236998

Protein	Function_ID	Function_description	E-value
NZ_CP013922.1\|WP_058625905.1\|2378655_2379222_-\|DUF4064-domain-containing-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	1.56559e-14
NZ_CP013922.1\|WP_029378555.1\|2379524_2379977_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.86031e-15
NZ_CP013922.1\|WP_029378557.1\|2382038_2383190_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	8.7881e-38
NZ_CP013922.1\|WP_029378565.1\|2391317_2391449_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	9.23659e-06
NZ_CP013922.1\|WP_029379225.1\|2366352_2367840_-\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP013922.1\|WP_029378558.1\|2383400_2384723_+\|xylose-isomerase	gnl\|CDD\|274238	TIGR02630, Xylose_isomerase, xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose. [Energy metabolism, Sugars].	0
NZ_CP013922.1\|WP_081225202.1\|2391551_2392955_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.35122e-138
NZ_CP013922.1\|WP_029378561.1\|2387758_2388310_-\|phenolic-acid-decarboxylase	gnl\|CDD\|226010	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.04839e-99
NZ_CP013922.1\|WP_029379226.1\|2365440_2366025_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	3.18718e-29
NZ_CP013922.1\|WP_081225201.1\|2390107_2390836_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.40303e-74
NZ_CP013922.1\|WP_081225200.1\|2388403_2388949_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	8.30301e-19
NZ_CP013922.1\|WP_029378560.1\|2386239_2387688_+\|D-xylose-transporter-XylE	gnl\|CDD\|182225	PRK10077, xylE, D-xylose transporter XylE; Provisional.	0
NZ_CP013922.1\|WP_029378559.1\|2384728_2386219_+\|xylulokinase	gnl\|CDD\|273550	TIGR01312, Xylulose_kinase, D-xylulose kinase. This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see , was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. [Energy metabolism, Sugars].	0
NZ_CP013922.1\|WP_029379228.1\|2363377_2364145_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.57692e-146
NZ_CP013922.1\|WP_081225199.1\|2369605_2377423_-\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|368038	pfam04650, YSIRK_signal, YSIRK type signal peptide. Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus.	3.37948e-08
NZ_CP013922.1\|WP_029379224.1\|2367941_2368865_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	8.36851e-35
NZ_CP013922.1\|WP_029378553.1\|2377742_2378564_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.01168e-10
NZ_CP013922.1\|WP_029378563.1\|2389016_2390111_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	9.01865e-25
NZ_CP013922.1\|WP_037557373.1\|2364347_2365448_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.16097e-56
NZ_CP013922.1\|WP_029379227.1\|2364146_2364347_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|236998	PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional.	1.1306e-13

>NZ_CP013922.1|WP_029378555.1|2379524_2379977_-|winged-helix-DNA-binding-protein
MENVDKTIEEAIIKFQIVMLHLNKEIVDIVKETGLSNLLSREQIEAMRIIKTEGKVTINELARLQNIFKTAASKRIAKLEEMGYVQRAHSDNKRIKLIKLSDEGEAFLKKATSVMTEAVKDRLGNKFTAEEVHHFVDQLTHIDNAFREHK
>NZ_CP013922.1|WP_058625905.1|2378655_2379222_-|DUF4064-domain-containing-protein
MKRTIERVLTWIGIALQLIAVILLAILIPMLGNNEIKDTFINQMMQEESSLTYGDANAFFSSLSGIVTTGLVIGIIILIIALIAAFLIGKKAKIAGVLLIIAGVISLLGNWINAVLWIVAGIMLLVRKPKAPVYSKDNDEDINPYIKDGSQVNEHNNSFVLSEEQKENEKEAIKDEYTKSDEENKYKY
>NZ_CP013922.1|WP_029378553.1|2377742_2378564_+|helix-turn-helix-transcriptional-regulator
MNYNLVIYKQHDKINYLNTPNFANLYLVIAGEVSFQKLASTYTFQQGEVFIVYDFEENLIISRQAIIACISINNITYHRFSLVYREGASDNYPPPKKITETYIETLKGILEEDFFNADIGVIKLINYLNHSKDNLYVNMSYSHNLIKNVVEYINTNYKKPLSLSYISKKFFVNSSYLSREFSKKMNISLLKYIKKVKIYSLSRELLLHGNWESTWREYGFRSYNTYLRDFKNIMHMSPKEFINQNSINQVNETIEQHELYKYLQQILDLIKSE
>NZ_CP013922.1|WP_081225199.1|2369605_2377423_-|YSIRK-type-signal-peptide-containing-protein
MKKVNSLFNEKQRYSIRKYHIGAASIIIGSVVFMNTGSLSYASEVDNKASEIVENEIHTNKERISNIDTAVQEKEDNKANSTIENQNNNPENQKSELKKEVSLVTELPISAPLLEKGNSKNDTQEKEVNKADKQLNDQINSGESPKQVIQENKDNQVEEHSNKNNNQIKDSKTGEVSNYHETELINKEDNLKVDGTDDTNKVVISQNENRQKVRRKRNVVNPSNDNNLTNDDYNKNANQMNTDVSSDGTMTYQWYPVIGGLSSQERFLITNGYGDNENRARKKATMLWLISNFDFTKEQRQSFKIQDLNSPLFGDDVYKWLEEAKKGNIIPKQGTMNLGRRNEMIISANNIILSDNKGFDRGIINFGDTRNFTPSDSDDVNNTTITSSDIDFGFTLKPPFEKIGVDNTWAVSDNEKEEIKSAIRKANSNINFVNINVSYNGTVFAQALNSSGEIVDSADLNANTVIIDKIFIEKKEKLDTLISLVENTKLLDESLYTPASINFLQRELDYTSIVIRDSYDPEINTIPDIISATNRLDYAIKSLVRRANVTELQNAISNAKNQGPFDNNIEEDQAIILALEVGENTVGNENTPQDVVDTVTTNINNALRERLQVKNLLQDVETLVNEAEEKNRNASNMVVTALTDGIFSNNENNTLTELVNSANNKKAEAQDKINLLPDSKKAPFQNRIDSLPTISIPEVNDADGNGIADDVDQAKARAENKVTEAEAADQAAKTKLVEYQQDGLITASEKADLDSLAATAQSKKAEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADDVDQAKARAENKVTEAEAADQAAKTKLVEYQQDGLITASEKADLENLATTAQSKKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADDEDQAKAQAESKVSEAEAADQAAKTKLVEYQQDGLITASEKADLDNLVTTAQSKKTEAQGLVDALPDGLKNDLATRLNNLTGIQVPEVNDADGNGIADDVDQAKAQAENKVTEAEAADQAAKTKLTEYQQDGLITASEKADLDSLAATAQSKKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADDEDQAKAQAESKVSEAEAADQAAKTKLVEYQQDGLITASEKADLENLATTAQSKKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPAVNDADGNGIADDVDQAKAQAESKVSEAEAADQAAKTKLTEYQQDGLITASEKADLDNLVTTAQSKKTEAQGLVDALPDGLKNDLATRLNNLTGIQVPAVNDADGNGIADDVDQAKARAENKVTEAEAADQAAKTKLTEYQQDGLITASEKADLENLATTAQSKKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPAVNDADGNGIADDVDQAKAQAESKVSEAEAADQAAKTKLTEYQQDGLITASEKADLDNLVTTAQSKKTEAQGLVDALPDGLKNDLATRLNNLTGIQVPAVNDADGNGIADDVDQAKAQAESKVSEAEAADQAAKTKLTEYQQDGLITASEKADLDSLAATAQSKKAEAQGLVDALPDGLKNDLVTRLNNLTGIQVPAVNDADGNGIADDVDQAKAQAESKVTEAEASYQAAKVKLSEYQQDGLITLTEREEIEELIVLAEKVKREAQKLVDALAESDKGDLSKRLDNLVYIQLPLINDADGNGIADDIDSEILKAENSVINAEVADKTVKDKLTEYQQDGLVSSNEKRELINLLTKAQRAKAEAQVLVDALSSEFRGDLPSRLNKLTGIEIPKVNDADNDGKKDDVDELKALVETKVQEAEAAHQNALAKLSEYQRDGLINQWEKNDILNLSHEVFSKKARAFALVDGLPKEQQDEFLNRLNKLTDLPIPEINDKNNNGIADDVDETKAQAESKVSEAEAANQAAKTKLTEYQQDGLITASEKADLDSLAATAQSKKTEAQGLVDALPDVLKGDLPTRLNNLTGIQVPEVNDADGNGIVDDKDRAQAESKVTEAEAADQVAKTKLSEYQEDGLITEPEKVALENLAATAQTAKTEAQGLVDALPDGLKNDLVTRLNNLTGIQVPEVNDADGNGIADNVDQAKARAENKVTEAEAADQATKTKLTEYQQDGLITASEKADLENLLVTAQSKKAEAQGLVDALPDVLKGDMATRLNNLTGIQVPEVNDADGNGIADDVDQAKARAENKVIEAESIDQTAKAKLVEYQEDGLIIEPEKVDLENLSAMAQSKKAEAQRLVDALPDVLKGDLPTRLNNLTGIQVPEVNDADGNGIADDVDQAKAQAESKVTEAEAADQAAKVKLSEYQQDGLITAPEKTDLENLAAMAQSKKTEAQRLVDALPDVLKGDLSTRLNNLTGIQVPAVNDADGNGIADDIDQAKAQAESKVTEAEAADQAAKTKLSEYQQDGLITASEKADLEKLAAIAQSKKAEAQKLVDAIPNDVKEALQNRLNRLEGIVVPSVSVNSNNGQSNSHNMQGKDDINKNKDTLQKSPALSSNPQKTLNSKADTSNDASNDMKGTHMSTANNESTNTTKLNINSDNTKRGKSNNVKVLSPSKVDEKIDAKTLPNTGEEATKDTTLFGALLASIGSLIVWRSRKKENTKETK
>NZ_CP013922.1|WP_029379224.1|2367941_2368865_-|AEC-family-transporter
MHEMLIILETVLLPIFIMIIIGYILQKKFSLDLKTLAKLNIYIFVPGFIFVKFYKTNFEIKLLLYIVLFFIIYIIILYGIGKLLTYFGTKDKGEATTLTNSILFFNSGNYGVPVNDLVFKGDPLAMSVQVIVLSLQNIFTFSYGIFSIQAVHIGKIKAMLGYFKMPVLYALIFAIILNYGNVTIPKFIWTPANYIADAMIAIALILLGAQIANIKFSFKWSSSYVFIFVRLIVGPVIALVIIKLMGLEGIIAQALFITSAMPTSVNSSVIAQEYDNYPELAAELVFLSTLLSAITVVIVIYISKILF
>NZ_CP013922.1|WP_029379225.1|2366352_2367840_-|xylulokinase
MNEAVLGIDVGTSSVKVIAVNKEGEVLAKVSEELDIIQLQSGYNEQQPDEWFEATKSCIRQILSNDSLNDIFIRGLSLSGQMHSLVALDSDNKPIRNAILWNDTRSTRQCATIEQHFGNYVLSNPVLEGFTLTKLLWIKDNEPNNWNKIATFLLPKDYVRFRLTGKINMEYSDASSTLLLDPKQKNWSKTIGSKFGIGDIYPTLVSSGDFIGYLESSLAKSLGLKEYVAVFAGGGDNACGALGAGVIKSNDTLCSIGTSGTLLTCEADEGKAYHHNLHYFNHVVENKSYVMGVTLAAGDSLNWLKNHVFPNLTFNQILSLASESTIGSEGLLFAPYLSGERTPHGDSQIRGSFIGLSTLHTNADIARSVIEGITYSLYETLVHLREKGKDITHITSIGGGAKNDFWLQLQADIFNTKVSKLKYEEGPCMGAAMLAIIGLNWYKSVEKIVDQFIIYDRTFYPNKAHHERYVKYFEVYQEVYRQTRPITARLLELSL
>NZ_CP013922.1|WP_029379226.1|2365440_2366025_-|thiamine-phosphate-synthase
MFVAITPYQDLSESHIKHYCEIEGVIDYLLIRTPMTTEEVIQWVHEIIKNGFSKDKIIIHSDINVIIQCDLSAIHFRENDPHIEEVQANYPDIQVSMSTHHKDGVANAKYLGIDFVLFGHVFETPSKPQQTPRAKSEVEGALQIDIPIIAIGGINQHTMPSLPSGFSGIAGISIFNQYSKQKLMNMKEVWDGHV
>NZ_CP013922.1|WP_037557373.1|2364347_2365448_-|FAD-dependent-oxidoreductase
MYDVIIIGSGVMGMSIARGLSQSFANIAVIDRDEAGKHASYKAGGMLGAQNEFTENSALFSLATTSQKMFEPLRDSLLEEVGVDIEYLNSGLIKLAANHYENKKIEQQYQFLRQHFTSVERLSSTDVQHMSNGAITSKHTKGLYMPEDHQINANHYTKALLKSLSHRHIDRIYQTTVTHVEAIKGGYRVDTQSETYYTEKLIVTGGAWTSRLLQQYLPCEAVSGVKGEVLLVEQPNLNLDVTMFLTNGCYVVPKLKNRYLIGATSYFDDYSVGVSNSGKSWLKSQALRYIPDLKNWKIINQWSGIRPYCQNEHPIMDEVNKDLFVIAGHYRNGILLSPLIGELISQWIINGHRPKQLYDFRLAEVK
>NZ_CP013922.1|WP_029379227.1|2364146_2364347_-|sulfur-carrier-protein-ThiS
MKCKINGDVFNFEQPINIQEVIQSLGLDETRIIVEHNETLIKREQFTSRIVNDEDNLELLEFVGGG
>NZ_CP013922.1|WP_029379228.1|2363377_2364145_-|thiazole-synthase
MFKIGNFTLNSRLLLGTGKFENEKVQTQAIEASETEVLTFAVRRMNLYDKDLPNPLAKVDLSKFITFPNTAGAKTAKEAVRIAEIADHAGVCDMIKVEVIGDDETLLPDPLETYEACKVLLEKGYTVCPYISNDVVLAKRLEELGVHAIMPLASPIGTGRGINNPLNLRYIIERVNVPVIVDAGIGSPKDACHAMELGADGILLNTAISSAADPVKMAEAMNKGISAGRLSYEAGRIPVKYTAQASSPTEGIGFL
>NZ_CP013922.1|WP_029378557.1|2382038_2383190_+|ROK-family-protein
MENNFIVNENEKRVLKQIFNNSNISRTQISKNLELNKATISNILNNLKHKSLVNEVGEGNSTKSGGRKPILLEINQKYGYYISMDLTYDYVELMYNYFDAAILKQDSYELNDKNVSSILQILKSNINVSEKYDTLHGLLGISISIHGIVDDEQNIINLPFHKNEKRTFTDELKSFTNVPVVIENEANLSALYEKSLYINSNINNLITLSIHKGIGAGIIINKKLYRGSNGEAGEIGKTLVLESINNNDNEYYKIEDICSQDALIQKINNKLGITLTFTELIQYYNDGNSIVAHEIKQFINRMTVLIHNLNTQFNPDAIYINCPLINELPNILNEIKEQFSYFSQGSPFQLHLTTNVKQATLLGGTLAIMQKTLNINNIQMNIK
>NZ_CP013922.1|WP_029378558.1|2383400_2384723_+|xylose-isomerase
MSYFDINKVNYEGPKSNNAFSFKYYNPEEKLGNHSMSELLRFSVAYWHTFTADLSDPFGVGAAERDWDSLDEMEKAKARVDAIFEFMEKTRIDYFCFHDVDIAPEGASLKESNENLDIIVELIKEKMDQTGKKLLWNTTNNFTHERFVHGAATSSNAEVFAYAAAKVKKSLEIAKKLGSENFVFWGGREGYESLLNTNMKLELDNLATFFKMAKSYADEIGYTGQFLIEPKPKEPTTHQYDTDVATAHAFLQKYDLDKDFKFNIEANHATLAGHTFQHELRYARDNNMLGSVDANQGHPLLGWDTDEFPTDVYDTTLAMYEILKNGGLAPGGLNFDAKPRRTSFKQEDLILTHIAGMDTFALGLRVAYKMIEDNFFENIMDEKYKSFNEGIGKKIVEGETSFKELEDYAFNINTINNTSDHLEVIKSQINQYILNINNKD
>NZ_CP013922.1|WP_029378559.1|2384728_2386219_+|xylulokinase
MAYVIGIDIGTSALKTLVVNKSGDVVESYSVSYNTAHPKSGYSEIDPEIWYEATLESLKHILNHYTHNDISGISFSGQMHGLVVIDQEGNPIRPAILWNDTRTSQEVEDIKQNLGLNSLLQLTQNTVLEGFTLPKLMWLKNNEQDNYKRISKFMLPKDYIVYKLTGNVYTEPSDAAGTIMFSVKDENWSTELLHRLNIDPSICPEIIASHQKSGQLTEKVKNSLGIDSNINVYQGGADNACGALGSGITDEQKQLVSIGTSGVALSIENRTDYENDGNVHYFNHCVPNQKYIMGVTLSAGYSLEWLKQLISADENFTTFLKDINQSEIGANGLMYTPYLLGERTPHNDASVRGSFIGLDANTTQLDMKRAVIEGITYSINESIQIMKNNAININEIVSIGGGAKNNQWLQIQADIFNTTITTRIEEQGPAYGAAMIAAMGEQWFNTFNEMSEAWIAYHQKVYPIETNTKSYQDLFNIYKTIYDATQPVTQKLNKFK
>NZ_CP013922.1|WP_029378560.1|2386239_2387688_+|D-xylose-transporter-XylE
MSTYNNKKFIFKIALIATLGGLLFGYDTAVISGAEQSLQQYLTKDYGSFIHGITVSSALIGCIIGGLLSSSFSSRLGRKKSLQVAAILFIVSAILSGCPEFLFFNSTEPNLGLLIAFNLYRIIGGIGVGLASAISPMYISEIAPSSIRGKLVSWNQFAIIFGMLVVYFVNYGITYGQPQSWIQDIGWRYMFITEAIPAIAFFFLLFLVPETPRFLSLSNKNTEALSVLNRIYSSKNHAQNVLNDILATKNKLTDVKAPLFSFGKTVIIVGILLSVFQQFIGINVALYYAPRIFENLGSGSNTSMIQTVVMGLVNVIFTIIAILYVDKFGRKPLLIIGSTGMAIGMIGMSVLAANGAFGVITLIFLVLYTASFMMSWGPIIWVLLSEIFPNRIRSSAMAIAVAVQWLANFTITSTYPTMMDVSGAMTYGFYALMSILSGLFVWKFIPETKGKTLEELENVWKKEDVTSISNKEEKVQSNSHSI
>NZ_CP013922.1|WP_029378561.1|2387758_2388310_-|phenolic-acid-decarboxylase
MTNNFETLEDFLGTHLIYTYDNGWEYEMYVKNENTIDYRIHGGMVAGRWVRDQEANIVKLTEGVFKITWTEPTGTDVALDFLPNDQIMHGTIFFPKWVEEHPEITVTYQNDHIDLMEASREKYDTYPKLVVPEFAKISYIGNAGQNNETVVNVAPYEGILEDIRSGKFFDENYQHTNSNSLIK
>NZ_CP013922.1|WP_081225200.1|2388403_2388949_+|PadR-family-transcriptional-regulator
MAQKNILQYVLLGLLKNERMSGYDIKKAFERDIGEFWQANHSQIYPELKKLHGRLLIDKTIEITGEKLEKKIYAITDTGRQLLNEWLVSPTPELPVHKNEFNLKLYFINDRNDPILPVMFDEQIHLHELKLEHLKERRTALFSNEASQEQHFGHYLVLDYAIERETHNINWLKSCHQNFKD
>NZ_CP013922.1|WP_029378563.1|2389016_2390111_-|ABC-transporter-permease
MRFKAVFIRVAKELLRDKRTLALMLFAPILVLTLLYFVFDTNSETNLKIGITDHVPNKIVNELPSDKVDIEKVDSSDSVKNTMVDSELDSYITKDGSKIEVTYANEDPSKTDATKQLLASALQKNKMQDMMKIVEKIPDNMQQGNKQSSENLELDNHYLYGNSDSTYFDKMFPILIGFFVFLFVFLISGIGLLRERTSGTLERLLATSIKRSDIVFGYLAGYGLFAILQTLLIVFYAIIILNIELAGSIWWVLLVNILIALAALSMGIFVSTFANSEFQMIQFIPIVAIPQIFFSGIIPLENIANWVSFIGYLFPLRYAGDALTHIMIKGQGLEYIWFDICILFVFIIVFTILNIIGLKRYRKV
>NZ_CP013922.1|WP_081225201.1|2390107_2390836_-|ABC-transporter-ATP-binding-protein
MSEVAAKLTSATKYYGKKKVLDHINIELPFGKILGVIGPSGSGKTTTIKCLMGMEKLDEGHAQIFDTSIPNRKILNEIGYMGQIDALYESLTARENLVFFGNLMGLDGDKLKQAIDKNMKLVNLENELHQIVNTFSGGMKRRLSLAITLLSNPNLIILDEPTVGIDPSLRKDIWKQLNLLTEENKSVIVTTHVMGKAERCDYIGLIMEGRLFTMGTPKELKEKFGVNSIEEVFIKAETEAQS
>NZ_CP013922.1|WP_029378565.1|2391317_2391449_+|beta-class-phenol-soluble-modulin
MAEIVEAIGKAVSAGLSHDWATMGVSIAEVLGKGVDFVLGFFK
>NZ_CP013922.1|WP_081225202.1|2391551_2392955_-|sugar-porter-family-MFS-transporter
MKVNSKVSNRFIYFFGAFGGILFGYDIGVMTGALPFLRENWGIESGFIIGLITSSVMLGAIFGGILAGKLSDKLGRRKMILISAIIFVIGSILSGIAPHEGNYFLIISRVILGLAVGAASALVPAYMSEMAPAKYRGQLSGMNQTMIVSGMLLSYIVDYYLRGLPIEIGWRLMLGIAAVPALILFLGVLRLPESPRFLIKNNRFKEAKMVLSNLRNNRKVDEEFEEIKKTIQKENNVKNNQSLATLFNGKYKCLVVAGLGVAAFQQFQGANAIFYYIPLIVEQATGNSASDALMWPIIQGVILVLGSLLFIWIADKFNRRTLLMLGGTVMGLSFILPAIIHMFLPNANPILIVIFLSIYVAFYSFTWAPLTWVIVGEIFPLAIRGFASGSASSLNWIGSFLVGLLFPIMTAYFSQQIVFAIFGVICILGVLFVKKFVPESRGRTLEEIEAIGESHNSNKVNAQVKNI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013922_1	1.1\|539203\|31\|NZ_CP013922\|CRISPRCasFinder	539203-539233	31	NZ_CP013922.1	539926-539956	2	0.935

1. spacer 1.1|539203|31|NZ_CP013922|CRISPRCasFinder matches to position: 539926-539956, mismatch: 2, identity: 0.935

tatcagaattgtctgtgctatcctcttgaac	CRISPR spacer
tatcagaagtgtctgtgttatcctcttgaac	Protospacer
******** ********.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

269539 : 276930

Pandoravirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081224872.1\|269539_270379_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.3e-56	41.4
WP_029377717.1\|270749_271811_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	5.4e-63	42.8
WP_029377716.1\|271995_272250_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_029377715.1\|272313_272907_-	hypothetical protein	NA	NA	NA	NA
WP_029377714.1\|273143_273860_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	8.5e-52	44.2
WP_029377713.1\|273852_274281_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_029377712.1\|274283_274955_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.1e-64	54.9
WP_029377711.1\|275210_275804_+	aminodeoxychorismate/anthranilate synthase component II	A0A0B5J984	Pandoravirus	4.6e-27	32.6
WP_029377710.1\|275787_276930_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	2.3e-22	38.6

DBSCAN-SWA_2

290197 : 305970

uncultured_Caudovirales_phage(41.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377701.1\|290197_291253_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.1e-18	24.2
WP_017722532.1\|291502_292051_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	1.0e-28	37.8
WP_080704801.1\|292215_293166_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	1.5e-11	24.1
WP_029377699.1\|293517_295026_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-72	35.6
WP_029377698.1\|295509_297024_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	4.1e-72	36.0
WP_029377697.1\|297207_297708_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.5e-52	70.8
WP_029377696.1\|297729_298611_-	DMT family transporter	NA	NA	NA	NA
WP_017722526.1\|299335_299734_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.0e-51	74.2
WP_029377695.1\|299696_301802_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	89.7
WP_029377694.1\|301918_302887_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	7.7e-173	92.2
WP_029377693.1\|303255_304224_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.8e-136	79.2
WP_029377692.1\|304213_305173_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	8.0e-05	54.0
WP_029377691.1\|305169_305970_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.3e-13	28.9

DBSCAN-SWA_3

555018 : 563494

Tetraselmis_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029379097.1\|555018_555501_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.7e-19	42.0
WP_081224920.1\|555487_556621_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_029379095.1\|556620_557322_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	1.2e-45	42.1
WP_017724119.1\|557324_557585_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_038678264.1\|557584_558256_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_029379093.1\|558248_560438_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.7e-133	37.7
WP_029379092.1\|560416_561904_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-46	32.2
WP_029379091.1\|561896_562925_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-65	42.2
WP_029379090.1\|562927_563494_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-28	39.8

DBSCAN-SWA_4

623210 : 712410

Staphylococcus_phage(54.55%)

tail,integrase,tRNA,terminase,holin,plate,head,portal

attL 631746:631761|attR 658761:658776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029379038.1\|623210_624269_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	6.5e-32	37.1
WP_058625607.1\|624268_626671_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_038678310.1\|626906_627836_-	ribonuclease HIII	NA	NA	NA	NA
WP_017724187.1\|628146_628413_+	cell division protein ZapA	NA	NA	NA	NA
WP_029379035.1\|628412_628934_+	CvpA family protein	NA	NA	NA	NA
WP_038678313.1\|629050_630763_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.2e-19	26.8
WP_029379033.1\|630772_633121_+	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	4.4e-12	23.9
631746:631761	attL	NA	NA	NA	NA
WP_017724191.1\|633202_633517_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	3.0e-25	48.5
WP_029379032.1\|633845_635633_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_029379031.1\|635962_636574_+	succinate dehydrogenase cytochrome b558 subunit	NA	NA	NA	NA
WP_029379030.1\|636619_638383_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_029379029.1\|638385_639198_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_029379028.1\|639405_640206_+	glutamate racemase	NA	NA	NA	NA
WP_029379027.1\|640217_640799_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_058625608.1\|640798_641308_+	metallophosphoesterase	NA	NA	NA	NA
WP_081224921.1\|641834_642878_-\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQE7	Staphylococcus_phage	1.6e-120	63.1
WP_081224922.1\|642974_643172_+	hypothetical protein	A0A2H4JBN9	uncultured_Caudovirales_phage	8.9e-28	90.8
WP_081225252.1\|644076_645123_-	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	3.0e-45	56.9
WP_081224923.1\|645461_645962_-	PH domain-containing protein	A0A0D4DCT6	Staphylococcus_phage	1.2e-55	66.7
WP_081224924.1\|646125_646884_-	helix-turn-helix transcriptional regulator	Q8SDX2	Staphylococcus_phage	4.8e-45	40.5
WP_081225253.1\|647067_647286_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081224925.1\|647404_648055_-	hypothetical protein	A0A2I6PCS6	Staphylococcus_phage	1.9e-42	45.6
WP_081224926.1\|648366_648615_-	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	1.2e-08	44.6
WP_119609916.1\|648790_649468_-	hypothetical protein	A0A2I6PDF5	Staphylococcus_phage	3.2e-48	60.2
WP_081224927.1\|649668_649872_-	hypothetical protein	NA	NA	NA	NA
WP_081224928.1\|649946_650252_+	DUF771 domain-containing protein	Q4ZD49	Staphylococcus_phage	1.4e-16	45.5
WP_081224929.1\|650257_650437_+	hypothetical protein	NA	NA	NA	NA
WP_081224930.1\|650511_650811_+	hypothetical protein	NA	NA	NA	NA
WP_081225255.1\|650855_651767_+	YqaJ viral recombinase family protein	A6XMH8	Bacillus_virus	1.4e-80	51.2
WP_081224931.1\|651778_652594_+	recombinase RecT	S6AVW6	Thermus_phage	7.4e-60	48.9
WP_081224932.1\|652635_653487_+	DnaD domain protein	A0A1Q1PVU4	Staphylococcus_phage	8.0e-49	43.0
WP_119609926.1\|653584_654388_+	ATP-binding protein	A0A2I6PDV5	Staphylococcus_phage	3.5e-62	45.9
WP_061050642.1\|654384_654585_+	hypothetical protein	NA	NA	NA	NA
WP_061050641.1\|654562_654769_+	hypothetical protein	A0A1W6JPS2	Staphylococcus_phage	2.3e-10	47.8
WP_155961203.1\|654772_654967_+	hypothetical protein	NA	NA	NA	NA
WP_155961205.1\|654960_655290_+	hypothetical protein	NA	NA	NA	NA
WP_155961233.1\|655184_655328_+	hypothetical protein	Q4ZC91	Staphylococcus_virus	6.9e-06	60.0
WP_081224935.1\|655329_655644_+	hypothetical protein	NA	NA	NA	NA
WP_081224936.1\|655666_655924_-	hypothetical protein	NA	NA	NA	NA
WP_081224937.1\|656150_656342_+	hypothetical protein	S4UCP8	Listeria_phage	1.1e-17	68.9
WP_119609918.1\|656341_656500_+	DUF1514 domain-containing protein	NA	NA	NA	NA
WP_081224938.1\|656518_656926_+	sigma-70 family RNA polymerase sigma factor	A0A1J0MFD1	Staphylococcus_phage	7.0e-43	64.7
WP_081224939.1\|657108_657369_+	hypothetical protein	NA	NA	NA	NA
WP_081224940.1\|657450_657972_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	3.6e-36	62.0
WP_081224941.1\|657964_659173_+\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	7.5e-202	82.8
658761:658776	attR	NA	NA	NA	NA
WP_081224942.1\|659185_660595_+\|portal	phage portal protein	A0A0H4IPW9	Staphylococcus_phage	3.4e-206	73.8
WP_081224943.1\|660557_661514_+\|head	phage head morphogenesis protein	A0A2H4JC26	uncultured_Caudovirales_phage	1.4e-134	74.8
WP_081224944.1\|661513_661708_+	hypothetical protein	NA	NA	NA	NA
WP_119609919.1\|661807_662350_+	phage scaffolding protein	Q4ZBR6	Staphylococcus_phage	1.5e-24	62.3
WP_119609920.1\|662361_663294_+	sugar-binding protein	A0A141VTM6	Staphylococcus_phage	8.0e-143	79.6
WP_081224947.1\|663307_663601_+	Rho termination factor N-terminal domain-containing protein	A0A1W6JQI6	Staphylococcus_phage	5.6e-26	66.3
WP_081224948.1\|663600_663897_+\|head,tail	phage head-tail adapter protein	A0A1W6JQJ1	Staphylococcus_phage	2.7e-28	61.6
WP_081224949.1\|663898_664234_+\|head	phage head closure protein	A0A141VTM9	Staphylococcus_phage	3.6e-37	63.3
WP_081224950.1\|664220_664634_+	HK97 gp10 family phage protein	A0A0N9BAY5	Staphylococcus_phage	7.3e-56	73.5
WP_081224951.1\|664645_665068_+	DUF3168 domain-containing protein	A0A2H4JEV8	uncultured_Caudovirales_phage	1.2e-45	64.7
WP_081224952.1\|665073_665619_+\|tail	phage tail protein	A0A1W6JPA3	Staphylococcus_phage	5.1e-73	79.7
WP_081224953.1\|665672_666167_+	hypothetical protein	A0A2H4JI48	uncultured_Caudovirales_phage	2.4e-61	72.0
WP_081224954.1\|666229_666538_+	hypothetical protein	A0A2H4JC15	uncultured_Caudovirales_phage	4.0e-27	62.7
WP_081224955.1\|666540_669630_+	hypothetical protein	Q4ZCD8	Staphylococcus_virus	1.9e-161	57.3
WP_081224956.1\|669641_670568_+\|tail	phage tail family protein	Q4ZC58	Staphylococcus_virus	2.8e-79	51.0
WP_081224957.1\|670579_672433_+\|tail	phage tail protein	Q4ZC57	Staphylococcus_virus	2.3e-181	53.2
WP_081224958.1\|672447_674355_+	hypothetical protein	A0A059T5B2	Staphylococcus_phage	6.3e-211	58.8
WP_081224959.1\|674351_676214_+\|plate	BppU family phage baseplate upper protein	A0EWM7	Staphylococcus_virus	3.0e-125	40.4
WP_081224960.1\|676213_676546_+	DUF2977 domain-containing protein	NA	NA	NA	NA
WP_081224961.1\|676602_678489_+	glucosaminidase domain-containing protein	B7T0E8	Staphylococcus_virus	4.2e-191	55.0
WP_081224962.1\|678523_678811_+	hypothetical protein	NA	NA	NA	NA
WP_081224963.1\|680452_680560_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_081224964.1\|680764_681022_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	8.9e-12	55.7
WP_081225257.1\|681449_682397_+	N-acetylmuramoyl-L-alanine amidase	A0A1P8CMK9	Staphylococcus_phage	2.4e-86	53.4
WP_081224965.1\|682640_683684_-	hypothetical protein	NA	NA	NA	NA
WP_155238587.1\|684213_684375_+	hypothetical protein	NA	NA	NA	NA
WP_155238586.1\|685518_685686_+	hypothetical protein	NA	NA	NA	NA
WP_029379025.1\|686868_687117_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_081224966.1\|688369_690253_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_037556993.1\|690765_690900_+	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_037556990.1\|690946_691081_+	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_037556988.1\|691123_691258_+	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_037556986.1\|691311_691446_+	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_037556984.1\|691489_691624_+	beta-class phenol-soluble modulin	NA	NA	NA	NA
WP_038678321.1\|691743_692430_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_029377553.1\|692561_693008_-	N-acetyltransferase	NA	NA	NA	NA
WP_038678322.1\|693280_694894_+	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
WP_017724208.1\|695042_695474_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_029377551.1\|695489_696425_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_017724210.1\|696439_696832_+	cell division protein FtsL	NA	NA	NA	NA
WP_081224967.1\|696812_699110_+	penicillin-binding protein	NA	NA	NA	NA
WP_029377550.1\|699294_700260_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_038678324.1\|700261_701611_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_058625805.1\|701626_702514_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_029377547.1\|702619_704047_+	cell division protein FtsA	NA	NA	NA	NA
WP_029377546.1\|704076_705252_+	cell division protein FtsZ	NA	NA	NA	NA
WP_038678325.1\|705378_706167_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_029377544.1\|706184_706859_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_029377543.1\|706864_707464_+	cell division protein SepF	NA	NA	NA	NA
WP_038678326.1\|707476_707767_+	YggT family protein	NA	NA	NA	NA
WP_058625807.1\|707858_708638_+	RNA-binding protein	NA	NA	NA	NA
WP_029377539.1\|708791_709409_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_081224968.1\|709659_712410_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	7.4e-88	28.4

DBSCAN-SWA_5

885362 : 921740

uncultured_Caudovirales_phage(47.83%)

terminase,integrase,tail,capsid

attL 885341:885358|attR 933479:933496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
885341:885358	attL	NA	NA	NA	NA
WP_081224985.1\|885362_886448_-\|integrase	site-specific integrase	A0A0S2GLI2	Bacillus_phage	8.1e-54	35.5
WP_081224986.1\|886434_886899_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_081224987.1\|886995_887349_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081224988.1\|887353_887752_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081224989.1\|887943_888162_+	hypothetical protein	NA	NA	NA	NA
WP_081224990.1\|888165_888402_+	helix-turn-helix domain-containing protein	A0A0B5A7F0	Streptococcus_phage	4.4e-05	42.9
WP_081224991.1\|888376_888571_+	hypothetical protein	NA	NA	NA	NA
WP_081224992.1\|888875_889847_+	YqaJ viral recombinase family protein	A0A0A7S0N7	Clostridium_phage	5.3e-57	40.7
WP_081224993.1\|889978_890794_+	recombinase RecT	S6AVW6	Thermus_phage	3.8e-48	45.3
WP_081224994.1\|890797_891049_+	hypothetical protein	NA	NA	NA	NA
WP_081224995.1\|891140_891386_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081224996.1\|891602_892346_+	DnaD domain protein	A0A2H4JAS0	uncultured_Caudovirales_phage	4.3e-22	53.8
WP_081224997.1\|892357_893143_+	ATP-binding protein	A0A1J0MFK2	Staphylococcus_phage	6.8e-79	55.2
WP_081224998.1\|893136_893400_+	hypothetical protein	NA	NA	NA	NA
WP_081225000.1\|894221_894611_+	hypothetical protein	NA	NA	NA	NA
WP_081225001.1\|894614_895118_+	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	3.8e-30	45.0
WP_081225002.1\|895167_895659_+	hypothetical protein	NA	NA	NA	NA
WP_081225003.1\|895670_896063_+	hypothetical protein	NA	NA	NA	NA
WP_081225004.1\|896065_896284_+	hypothetical protein	NA	NA	NA	NA
WP_081225005.1\|896323_896530_+	hypothetical protein	NA	NA	NA	NA
WP_081225006.1\|896534_896786_+	hypothetical protein	NA	NA	NA	NA
WP_081225007.1\|896798_897026_+	hypothetical protein	NA	NA	NA	NA
WP_081225008.1\|897040_897298_+	hypothetical protein	NA	NA	NA	NA
WP_081225009.1\|897298_897535_+	hypothetical protein	NA	NA	NA	NA
WP_081225010.1\|897535_898087_+	dUTP pyrophosphatase	A0A0N9S8K4	Staphylococcus_phage	3.9e-65	68.7
WP_081225011.1\|898123_898315_+	hypothetical protein	NA	NA	NA	NA
WP_081225258.1\|898310_898571_+	hypothetical protein	A0A2H4J550	uncultured_Caudovirales_phage	6.9e-20	51.2
WP_081225012.1\|898584_898797_+	DUF1381 domain-containing protein	NA	NA	NA	NA
WP_081225013.1\|898799_898997_+	hypothetical protein	NA	NA	NA	NA
WP_081225014.1\|899023_899341_+	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	1.4e-11	46.8
WP_081225015.1\|899353_900028_-	hypothetical protein	NA	NA	NA	NA
WP_081225016.1\|900255_900471_+	hypothetical protein	NA	NA	NA	NA
WP_071562005.1\|900478_900676_+	hypothetical protein	NA	NA	NA	NA
WP_081225017.1\|901497_901740_+	hypothetical protein	NA	NA	NA	NA
WP_081225018.1\|901732_902215_+	Holliday junction resolvase RecU	A0A2H4J2G2	uncultured_Caudovirales_phage	3.6e-30	45.5
WP_081225019.1\|902241_902691_+	hypothetical protein	NA	NA	NA	NA
WP_081225020.1\|902892_903357_+	hypothetical protein	A1EAE0	Streptococcus_phage	4.7e-35	58.2
WP_081225021.1\|903353_904748_+\|terminase	phage terminase large subunit	A0A2H4J7G6	uncultured_Caudovirales_phage	3.0e-162	57.6
WP_081225022.1\|904801_906511_+	hypothetical protein	A0A2H4J9U4	uncultured_Caudovirales_phage	1.3e-122	46.9
WP_081225023.1\|906520_908407_+\|capsid	capsid protein	A0A2H4J2F6	uncultured_Caudovirales_phage	2.6e-55	38.0
WP_081225024.1\|908399_908654_+	hypothetical protein	NA	NA	NA	NA
WP_081225025.1\|908908_909547_+	phage scaffolding protein	Q20DD5	Lactobacillus_phage	1.2e-09	28.0
WP_081225026.1\|909550_909919_+	hypothetical protein	A0A2H4J5H4	uncultured_Caudovirales_phage	3.2e-23	48.8
WP_081225027.1\|909942_911022_+\|capsid	major capsid protein	A0A2H4J2G1	uncultured_Caudovirales_phage	1.6e-57	37.1
WP_081225028.1\|911039_911327_+	hypothetical protein	NA	NA	NA	NA
WP_081225029.1\|911337_911718_+	hypothetical protein	NA	NA	NA	NA
WP_081225030.1\|911714_912059_+	hypothetical protein	NA	NA	NA	NA
WP_081225031.1\|912048_912528_+	HK97 gp10 family phage protein	A0A1U9WQQ7	Geobacillus_phage	1.6e-22	42.0
WP_081225032.1\|912530_912941_+\|capsid	minor capsid protein	NA	NA	NA	NA
WP_081225033.1\|912978_913932_+	Ig domain-containing protein	A0A2H4J7F5	uncultured_Caudovirales_phage	6.0e-29	44.0
WP_081225034.1\|914021_914534_+	hypothetical protein	A0A2H4J2E6	uncultured_Caudovirales_phage	9.5e-13	30.9
WP_081225259.1\|914614_914869_+	hypothetical protein	NA	NA	NA	NA
WP_081225035.1\|914909_920240_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1W6JQA9	Staphylococcus_phage	5.6e-156	56.7
WP_081225036.1\|920255_921740_+\|tail	phage tail family protein	A0A2H4J1X6	uncultured_Caudovirales_phage	4.4e-111	44.4
933479:933496	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1247188 : 1256387

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377115.1\|1247188_1247707_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	46.9
WP_029377114.1\|1247719_1249999_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.7e-72	29.6
WP_029377113.1\|1250232_1252509_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.6e-30	33.5
WP_017724668.1\|1252916_1253177_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.7e-06	44.1
WP_029377112.1\|1253194_1254334_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-85	44.7
WP_029377111.1\|1254354_1255380_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_029377110.1\|1255382_1256387_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	3.4e-06	30.8

DBSCAN-SWA_7

1377889 : 1411995

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029377009.1\|1377889_1379164_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.1e-38	74.0
WP_029377008.1\|1379511_1379823_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.2e-36	69.9
WP_029377007.1\|1379842_1382257_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.3
WP_029377006.1\|1382775_1383945_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.6e-167	78.0
WP_017722183.1\|1384054_1385008_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	5.1e-68	85.4
WP_029377005.1\|1385004_1385565_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	3.0e-60	60.5
WP_029377004.1\|1385660_1386062_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_029377003.1\|1386212_1387169_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_029377002.1\|1387387_1388212_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_029377001.1\|1388478_1389480_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	1.5e-123	65.5
WP_029377000.1\|1389677_1390136_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-58	77.0
WP_029376999.1\|1390149_1391331_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-169	73.3
WP_029376998.1\|1391341_1391974_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-72	63.8
WP_029376997.1\|1391980_1393024_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.1e-130	64.7
WP_029376996.1\|1393587_1395051_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	4.6e-12	61.8
WP_029376995.1\|1395221_1396148_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_029376994.1\|1396570_1397425_-	N-acetylglucosaminidase	A0A1W6JQU5	Staphylococcus_phage	5.2e-40	44.1
WP_017722196.1\|1397589_1397814_-	hypothetical protein	NA	NA	NA	NA
WP_029376993.1\|1398031_1398499_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	5.8e-25	42.3
WP_029376992.1\|1398511_1398934_+	competence protein ComK	NA	NA	NA	NA
WP_029376991.1\|1398942_1399392_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	7.0e-20	44.0
WP_029376990.1\|1399528_1400164_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_029376989.1\|1400372_1401086_-	transaldolase	E3SKN5	Synechococcus_phage	5.0e-20	35.3
WP_029376988.1\|1401375_1401681_+	hypothetical protein	NA	NA	NA	NA
WP_029376987.1\|1401910_1402276_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.3e-36	60.7
WP_029376986.1\|1402272_1402626_+	CrcB family protein	NA	NA	NA	NA
WP_029376985.1\|1402766_1403603_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-112	69.0
WP_029376984.1\|1403817_1404726_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	7.4e-93	78.9
WP_029376983.1\|1404819_1406016_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.8e-195	86.4
WP_029376981.1\|1406404_1407994_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	7.7e-263	81.8
WP_037557004.1\|1408058_1408808_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.9e-102	72.2
WP_037556911.1\|1408815_1409292_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.2e-41	53.2
WP_029376978.1\|1409358_1409595_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.7e-31	84.7
WP_029376977.1\|1409591_1410596_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-90	48.5
WP_029376976.1\|1410615_1411995_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.9e-165	60.7

DBSCAN-SWA_8

2140176 : 2174004

Staphylococcus_phage(59.38%)

tail,capsid,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081225145.1\|2140176_2140410_-	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	1.9e-05	33.9
WP_081225146.1\|2140409_2141696_-	hypothetical protein	A0A2H4J5W4	uncultured_Caudovirales_phage	2.4e-20	50.5
WP_081225147.1\|2141710_2142682_-\|tail	phage tail family protein	A0A1J0MG18	Staphylococcus_phage	4.1e-49	37.7
WP_081225262.1\|2142694_2146435_-\|tail	phage tail protein	H9A0P1	Staphylococcus_phage	3.3e-14	37.4
WP_081225148.1\|2146516_2146867_-	hypothetical protein	H9A0V9	Staphylococcus_phage	5.8e-22	50.0
WP_081225149.1\|2146914_2147274_-\|tail	phage tail protein	H9A0V8	Staphylococcus_phage	9.8e-33	59.2
WP_081225150.1\|2147345_2147978_-\|tail	phage major tail protein, TP901-1 family	H9A0V7	Staphylococcus_phage	9.2e-42	65.2
WP_155961217.1\|2148037_2148466_-	hypothetical protein	A0A1W6JNL2	Staphylococcus_phage	3.9e-28	45.6
WP_081225152.1\|2148446_2148794_-	HK97 gp10 family phage protein	A0A2H4J1L1	uncultured_Caudovirales_phage	4.7e-32	60.7
WP_081225154.1\|2149096_2149426_-\|head,tail	phage head-tail connector protein	A0A2H4IYR7	uncultured_Caudovirales_phage	1.3e-31	59.6
WP_081225155.1\|2149427_2149691_-	hypothetical protein	A0A1W6JNX0	Staphylococcus_phage	1.0e-15	51.7
WP_081225156.1\|2149712_2150645_-\|capsid	capsid protein	Q4ZE33	Staphylococcus_virus	4.9e-124	74.5
WP_081225157.1\|2150669_2151272_-	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	7.5e-09	40.8
WP_155961219.1\|2151549_2151723_-	hypothetical protein	NA	NA	NA	NA
WP_081225158.1\|2151724_2153605_-\|capsid	minor capsid protein	H9A0U7	Staphylococcus_phage	1.3e-86	52.6
WP_155961221.1\|2153611_2155018_-\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	3.5e-166	63.4
WP_155961223.1\|2155072_2156350_-\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	1.2e-186	74.6
WP_081225160.1\|2156330_2156774_-\|terminase	terminase small subunit	A0A141VTM0	Staphylococcus_phage	1.2e-32	57.0
WP_081225161.1\|2156867_2157299_-	hypothetical protein	NA	NA	NA	NA
WP_081225162.1\|2157552_2157969_-	transcriptional regulator	Q4ZC00	Staphylococcus_virus	3.3e-48	65.4
WP_081225163.1\|2158234_2159596_-	DEAD/DEAH box helicase	A7TWI6	Staphylococcus_phage	3.4e-182	66.2
WP_081225164.1\|2159585_2159870_-	VRR-NUC domain-containing protein	A0A2I6PDQ7	Staphylococcus_phage	1.8e-21	56.7
WP_081225165.1\|2160388_2162866_-	virulence-associated E family protein	Q4ZCN2	Staphylococcus_virus	8.3e-280	56.0
WP_081225166.1\|2162883_2163099_-	hypothetical protein	NA	NA	NA	NA
WP_081225167.1\|2163181_2163496_+	hypothetical protein	NA	NA	NA	NA
WP_081225168.1\|2163499_2163808_-	MazG-like family protein	A0A142F1R8	Bacillus_phage	5.7e-29	62.0
WP_081225169.1\|2163845_2164181_-	hypothetical protein	NA	NA	NA	NA
WP_081225170.1\|2164180_2164594_-	DUF3310 domain-containing protein	A0A1J0MFT5	Staphylococcus_phage	7.9e-10	40.9
WP_155961225.1\|2164593_2165178_-	hypothetical protein	Q4ZC91	Staphylococcus_virus	2.0e-11	27.5
WP_155961227.1\|2165159_2165336_-	hypothetical protein	NA	NA	NA	NA
WP_081225173.1\|2165527_2167477_-	DNA polymerase	Q4ZD45	Staphylococcus_phage	6.8e-261	67.7
WP_081225174.1\|2167498_2168062_-	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	1.8e-49	60.4
WP_081225175.1\|2168139_2169318_-	DUF2800 domain-containing protein	Q4ZD47	Staphylococcus_phage	1.2e-127	60.4
WP_081225176.1\|2169317_2169695_-	hypothetical protein	NA	NA	NA	NA
WP_081225177.1\|2169694_2170006_-	DUF2482 family protein	A7YGP8	Staphylococcus_virus	8.9e-06	35.9
WP_081225178.1\|2170066_2170249_-	hypothetical protein	NA	NA	NA	NA
WP_081225179.1\|2170327_2170525_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081225180.1\|2170904_2171243_+	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	2.5e-22	43.6
WP_081225181.1\|2171246_2171876_+	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	1.2e-28	37.9
WP_081225182.1\|2171916_2172468_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.1e-22	45.6
WP_081225183.1\|2172606_2174004_+	recombinase family protein	I1W625	Staphylococcus_phage	2.3e-109	44.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013922

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection