CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015010	Rickettsia bellii isolate An04 chromosome, complete genome	2 crisprs	DEDDh,cas3	1	0	2	0
NZ_CP015011	Rickettsia bellii isolate An04 plasmid unnamed, complete sequence	0 crisprs	RT	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015010_1

353111-353206

Orphan

Consensus_repeat	Method
ATCCAATGATGAGCTATACTTTTCATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015010_1

>merge|NZ_CP015010|1|353111-353206|CRISPRCasFinder
ATCCAATGATGAGCTATACTTTTCATATTCTTTGCCATAATAGCTTTTTCTTCTTCTCTACCTTGTTGCATCCAATGGTGAGCTATACTTTTCATA

>NZ_CP015010|1|1|353111-353206|CRISPRCasFinder
ATCCAATGATGAGCTATACTTTTCATA	TTCTTTGCCATAATAGCTTTTTCTTCTTCTCTACCTTGTTGC
ATCCAATGGTGAGCTATACTTTTCATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015010.1\|WP_011478018.1\|354018_355341_-\|DUF2748-domain-containing-protein	unknown	unknown	gnl\|CDD\|371278
NZ_CP015010.1\|WP_045799174.1\|345317_347834_-\|transporter-AmpG-3	unknown	unknown	gnl\|CDD\|379224
NZ_CP015010.1\|WP_011478024.1\|363516_363843_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP015010.1\|WP_011478026.1\|365197_365560_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP015010.1\|WP_045799179.1\|334638_335547_-\|TerC/Alx-family-metal-homeostasis-membrane-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP015010.1\|WP_012152284.1\|365611_366454_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NZ_CP015010.1\|WP_011476776.1\|339231_341655_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP015010.1\|WP_045799172.1\|349397_352916_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP015010.1\|WP_045799177.1\|341958_343248_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP015010.1\|WP_045799169.1\|358194_360297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015010.1\|WP_045799180.1\|333862_334594_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP015010.1\|WP_045799178.1\|335550_339033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015010.1\|WP_045799175.1\|344056_345316_-\|AmpG-family-muropeptide-MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP015010.1\|WP_011478025.1\|364940_365201_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP015010.1\|WP_045799168.1\|360674_363248_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP015010.1\|WP_012152285.1\|366573_366789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015010.1\|WP_045799173.1\|347928_349233_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP015010.1\|WP_011478023.1\|363284_363530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015010.1\|WP_045799176.1\|343234_343981_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|223876
NZ_CP015010.1\|WP_045799170.1\|355343_357200_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015010.1\|WP_011478018.1\|354018_355341_-\|DUF2748-domain-containing-protein	gnl\|CDD\|371278	pfam10871, DUF2748, Protein of unknown function (DUF2748). This is a bacterial family of proteins with unknown function.	0
NZ_CP015010.1\|WP_045799174.1\|345317_347834_-\|transporter-AmpG-3	gnl\|CDD\|379224	pfam13502, AsmA_2, AsmA-like C-terminal region. This family is similar to the C-terminal of the AsmA protein of E. coli.	1.31624e-06
NZ_CP015010.1\|WP_011478026.1\|365197_365560_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.21885e-15
NZ_CP015010.1\|WP_045799179.1\|334638_335547_-\|TerC/Alx-family-metal-homeostasis-membrane-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	4.94526e-114
NZ_CP015010.1\|WP_012152284.1\|365611_366454_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	4.10047e-24
NZ_CP015010.1\|WP_011476776.1\|339231_341655_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP015010.1\|WP_045799172.1\|349397_352916_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP015010.1\|WP_045799177.1\|341958_343248_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP015010.1\|WP_011478024.1\|363516_363843_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.70022e-31
NZ_CP015010.1\|WP_045799180.1\|333862_334594_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	2.08756e-05
NZ_CP015010.1\|WP_045799175.1\|344056_345316_-\|AmpG-family-muropeptide-MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.47034e-126
NZ_CP015010.1\|WP_011478025.1\|364940_365201_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.51717e-10
NZ_CP015010.1\|WP_045799168.1\|360674_363248_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP015010.1\|WP_045799173.1\|347928_349233_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP015010.1\|WP_045799176.1\|343234_343981_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|223876	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion].	2.20193e-73

>NZ_CP015010.1|WP_045799172.1|349397_352916_+|DNA-polymerase-III-subunit-alpha
MQTEFIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPIHGVILNIQYETGVFAEILLIAKDETGYKNLLKLSSITFTTNDRKICNHITFEDLKEHQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHDLPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQNIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKSVIPQLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIVDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSLIKVSSLSKEILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSADLHNNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDVKSLVVVNCDIIKDEGGIKITAKSFSSIENATGNQQFDLQLYPKNDEELEQIITLLSARINNDEQSNTIATIYLSNKSVKNFVAKITFPEKFFLKGQDFEILSIYQNT
>NZ_CP015010.1|WP_045799173.1|347928_349233_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MNITFIGSGYVGLVSGVMMSYLGHNVTCLDNDETKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASGEADLSYVYEAIDKISLHINKDCLIVIKSTVPPNSCNNIINYLKEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIGVNNKESEDILRKIYMPLTDNGAELVITDLVTAELIKYGSNSFLATKIAFINEMANLCEKIGADIKNLSKGIGLDKRIGTAFLNAGPGFGGSCFPKDILALNSIIKNNYIDSKILEAVIRSNKERPSLMVDKIATLLDEDLKGKNIAVLGLTYKAGTDDVRASPAIEIIKNLLDKGTYVKAFDPMGLENSQKTFQNENLLYLDSAIKVCDSSDAIIITTEWSEFQALDWQKIYSLVKTPIIIDLRNILKADEVESIGFRYYTVGSKI
>NZ_CP015010.1|WP_045799174.1|345317_347834_-|transporter-AmpG-3
MNFLRKAFISIFTTFAALFLVAYLIFYSANHGHMNKPLKRVIEFYLSKNDIKAVIDDLNFKENHLIINKISLYLIDNAEGEINDLDITLNFKNLFSNSLLIEAYFNVAQFSVISNNKEEIINTQINGDYSLNIFQRNILTNINLTSIKSDILTDEKGAGLPLGKAICVYKTSNTKSNPKIADCKLNFGNKASLTLNSKVTDKNIDANANIVNIPLIIYQTVEKIIPNNPVISYLREHIKQGHIQNGELSIKLDRKFLKENILEDDNLKANLHISNFEYKYHKDLPALTKVDTNIVISGAEIKFLINEAYSGNSVLSNGIMTFKWEGPLKSQFVFNATAKGEISDLVDFIPNDAYQNVKNEDIDLKEIKGNANSIIEIIIPINPEIDNSYNVTSTLTDINFNTLSNNILLQQGEAKGVFKDNQLNITGKGKINNYVSNFTYDHDMVNENNNCLLKIKSNITANNKSFGILKLMSGSAVLDFEYKKQNNNTTIDLNSNLDNLEFYIDKVAIHKQLRKKANLNIHTKLSDKGSDKNIEFNLSGDDSLKISGNILAKKDTYNIFLLSINHKNTRLSGKITIDSHNLNTEIYGSVLDLSNSNMMEFLQKDGDSTRNVMLKTNIYKILLKDNVILDNFDLAIKCDKVRCFSGFLNSNISNNGKVRMSLTAQESYEQWLIESDNAGALLKGLGMYSSMQDGYAKINLNTRRYKVKKGDIIPILDGKFYITRFALTDTPFLTRLVSFVSIPGLLSSITNNKNISFEDMNGNFSYQGNVITLYGAEAHGPFFDFTMKGNIDTNQKLIQIKGNVIPSFFFISSIVTKIPVVGKIFSKVAPYSLKIQYK
>NZ_CP015010.1|WP_045799175.1|344056_345316_-|AmpG-family-muropeptide-MFS-transporter
MFLIKKISIDKIYLLGILLLGLISGFTFNLIFFTVPYQLSEARYTTDIIGLISLAAFPYCLKVVWSPFIDKYSIPFLCSKFGARRGWAIASQLCLILAMTGFLSFSPCDNIYITATILFIISFCAATQDIVLDAYRIERPTSKKELSLAFTFGSIGFRLGMLLGSVGALYISVIFDWSTVYKLAICITFLGPMIVLCIKEPKPKQKSHRTKDLINLKQYFEVIKSSIISLKNEQQHLLLIMLFVFLYKAADSIPMAMSSPLLLDLSFTTHEIAFIYKAYGLLIMIVGGALGGILSTKIGILRSVLTGGIIQLLSPLMFMILAIVGYNVKIFIITITTQNFCIGFAGTIISIYFANLCNSEFIATQYSIIASFSSVSRIVLAALGGICAKYLPWSLFFFCNTLFSMLFILVFFKVYGKKI
>NZ_CP015010.1|WP_045799176.1|343234_343981_-|twin-arginine-translocase-subunit-TatC
MKLYSFQEHLSELKVRLSRIFIIFIVAFAICYYFSDNIYSFLLEPLAKLSKDNLRNIIYTGLTEAFFTYIKLAAFAAFAIIIPIIALECYLFVSPGLYHHEKKIIAFILFISPILFWCGSIFVFYFVMPKAWNFFLSFEKRDLIVPIVLEARISEYLNLVIHLIIAFGVAFQLPVVIIILNTLKIITIETLKQKRRFAIVINFIIAGILTPPDILSQFALAIPLLLLYEISIIICNYIEKTEVINAKY
>NZ_CP015010.1|WP_045799177.1|341958_343248_-|serine--tRNA-ligase
MLNIKWIRENQELFDDKLRQRFIEPMAKRIEELDGKKRKITNLIQEFQHARKVKSKILGNINPKSGEEFEGLQRDVKDINEKLEELEQDLNNNNELNELLNTLPNIPDEEVPYGIDESMNKLIRTHGTHGEVDLNAQNKKQHFELGVKLDLMDFEQTAKISGARFVTLKGDLAKLERALANFMLDVHTGEFGFLEVSPPVLVRDNAMYNSGQLPKFADESFATTNGYRLIPTAEVSLVNMVADTIIPREKLPMRLVAYTPCFRSEAGSSGRDTRGMIRLHQFSKVELVSITTPEESKNEHEYMTNASETILQKLGLPYRTMLLCTGDMGFASQKTYDIEVWLPGQKQYREIASCSNCGDFQARRMKARYKEFGSHDTTLVHTLNASGLPIGRTMVAILENYQNEDGSITVPDVLVNYMGGLQKITAYKE
>NZ_CP015010.1|WP_011476776.1|339231_341655_-|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MFSGLRKFDKDIYNYNAPNFIPIACHYNEHTLLTKDGKLLQIIKVYGISSEKISDKIQNLREIIRASVKKHTNSYDFAFWMHTIREKQNLDDPTPYKKLLPANIHALWQRKNHWNDKFVNTLYISIVHDSAKIKIKNFGSLINSLSTKLIVDFENKYLESAVQKLESLANNILNDLNEFDAEKLGITFENENTFSAPLFLYNRIANINDSDCLVPIIDLSSAIGRSTYTISGDKMIVTNQEQNKKFISLLSIKEYQESPSEALDKFLQLPLELIITEIFYFVDKKVVTAALKGQDYILKITNDNNLIEHKGINKLNDNKSSFEFCNQQISIAVIEEDEDKLTASVAKAARELFKLGIVHVKEDLNIEQTFWAQLPANFAFIRRMSPLLSDHIASLAALHNSPLGSQYTSWGRALTLLRTERGTPYFMNFHDKTGRGNTCIFGTEKTGKTVLLNFLVSESTKYDPTIIYISNSNDSKIFIEALEGTWLEIDKQIINPFLVDDTEKSQAFILEFLKMLSGHYISPLNEVELTFLEKLRSKILSIDKEKRIFSDILKLEDFKEEGGSTILDKLKGFTEGQLYSGLFDQSVFNINESSIVGLNLYKLSDEPFAKQFYPSERKYLEQFNNNLKKHQSVCASVVYALTYHLSLVGTKPKIFAADSFDKLYKPEIYSDNISLIFNNLSENNGVFVGNFNFIYLKKYTLKAWLEIINTKIILPSDVKIEDLDEILGLTDSEIRKLSQLILTSRMFLINKDNESIALELSIAALVGVVRILSSKKEEMAIYKEVLEKYQGPPDNWINYLYDALNVD
>NZ_CP015010.1|WP_045799178.1|335550_339033_-|hypothetical-protein
MLKKYLLFFLFLFCSINTHASIWGDIGGCITDPCNCGQSERTETWNKGPNQIVKTFKTGANCPPWNKSDGRDTDNCLLQFDYPGRFVPFVLNRCAQASPDSTYFTPKITIRIQSCNAAACWSQNANLNWDGQCVLWPTGYGLPLTRVCARIAVPAMAPPPGINSDPSPADPGYTAGFHLNKVGFTDSDDTIVGVDGQILTISSPKLCAYSDPGLVNLVSDSGPHTDLVDWNPNSQPLHETTKLSPIAQVLKFLVTTLGGANIPSLLSKLLGMISQDSEIIKVLQTVLNAIGDLFNFFPNKVIIPIIEAFGSLNGSVDDFSFGCVQLPLGPYPPPFCKSLNELSVPAVINNICSVKNPDGTFNQSSVVLPCVVSNVRNNIINNTVRVSFNNLIPLCTGDNPDLNTCVEIKGVFTSASSAHVATAYTDFIKPCSSSSSGAPCINTNIKLPCDVTANGCNQGFRIVYSQVMDKLETPSDYFISDIPDCGTAEANNSTSCQKIWGANIGQFVDVSVQFPEVQVQDKDNLMPIQKSFTLNDSNNKPRSLYASISNTKTDTQDPADICVFESSSLAGCVPRVSDSYSLATYECEKQYSGITCPSNSYYTPQFVASMQVIDDKGNIIDQTSTLVTPLSYAAPDPDNPNATESVVTLAGYNYSSSVAFIPKDPPKYPDDKYIAMPFSGPNALNQITIHGVYKDNIPPYDNNGNSNPNAVYLKYLEYINGKYVQGGTHTCLMPKNFQHCSPVPPPPSTTPGNPNNNQQINCVLAKLDQSNTVDCSVLKSKIAEDANYANLSLCESTSGCSQVETLSGTGKGITVYKCANNTNCYTNNDNPNTPVCVLTTDYLNRLEPKSNLGSILDATQYYKVTFYPSDDPAKPNQPTYDVKVSDVRDKTWRELNLCSPILAPVCSAITSPQASDGNALWGETDIGELRVGTCPPNWVEIDPSLDPYPNLEPKGTSLKRYCLSNFDNKTIKFETLGQNIGCRESKGLPIEIIENNFPTELVNTPYNPTTKTGDFILNVVPLQPDPSLGVDAFPRDPRTFIDASNEPDNSKLFTITFKVTLDAIMADIDYFKILDLWYDDCTLVYVNNTKVLSAPIASQDSLDQKAYCNNGNDQGMALQAKNLPLDIKPYLKQGENTIKFQLRVMYGGGLYYHMQYKMLR
>NZ_CP015010.1|WP_045799179.1|334638_335547_-|TerC/Alx-family-metal-homeostasis-membrane-protein
MSWIIFYTIIFALLVLDLGVIHKKNEVMSFKQSLLFSLFYFTISCLFGIYIYYNMGADSTREYYTCFLIEKAMSLDNIFVISIIFQFFKIPQKYQHRVLFFGIIGVIAFRAVMIYGGIILINKFSWLLYIFAVILIATGVKTFYVLHKTFDIQNSYLYKSIIKYLNVTPNLEGDKFFVMHNKKLYVTPLFISLILIEAIDLVFAIDSIPAIFAITNDAYIIYTSNIFAILGLRALFFCLAEIVERFSYIKYSLALILIFIGIKIFIHHYIAIPAYISLTVTITLLLLGIFASVIRKNIVDRQ
>NZ_CP015010.1|WP_045799180.1|333862_334594_-|outer-membrane-beta-barrel-protein
MIKLLQLFTVALSIFITNAVFAEENINEQTGFYIGGEGGVVEPVISKFRHKHSNTEIILKRAGMYSGKIGYMIYPQISVEFSATYQPKYRLHYVLPPQNLSNGLTMPKTPGNTKVFSNIYMLNLIYDLEEMNGITPFVIIGGGIAQVKVKPTSSKWDVINSDYFKVRKTHKNCVAWQAGLGVSKSLSSNFSVDLTAKLQTVYRVRINYDTLDMKTGQFLPAKPIKKTIGVGEFGIGFTYRLPF
>NZ_CP015010.1|WP_011478018.1|354018_355341_-|DUF2748-domain-containing-protein
MSTIYHILDHVPAIYKEDMEIEYENLAMQIIKSGKLRIDTDDCCNFARFSDPAFNISMMVSKEELTDPHLIPETTKLFQNLYRNSATDQKIKSVFDNLKKQIHKLQPVKKEVMEMLARIFVQSAHPIVIRWLLLDKTEIFITYSHNIGDMMDMVNWQKVGGNSGMQSTNGKDVAIFVSCGGNPFAENSKDHPIYGGGFAAVARLQIIAAQELGHFADIKRDNKGRQITRHSANFSGTKATDNARIARKKDIEHCRNLLHKLLIAGMKKQLDYETKLKFYHANKVSGLKILAINFMIFIYKFKLLRYSNKHGLVFVRKFKSDKYMALMIDAMFKDMQANLSPSADVYKNKNPEIEEAVACIEALARVPQQVMKWGYLTTKETMHELYKIYYNEVIPSLITSYDAVTGENYKRSLKKAKVSLLAKINIFNKKKLVLKPVREL
>NZ_CP015010.1|WP_045799170.1|355343_357200_-|hypothetical-protein
MEPVQRKQYYETAAYCFEETQTNFRKDIFNEQDLNQLIATAYNNAGNEEKALQFLQKTRLYKLAQELGQKNSQELVIANPIQDNDNISPQIIQEAIRHLFLEQQRQNIVQQEQGQRIGALEQEIDKIKKMLSNANIDTIDGINTQIKELEKKDSDLYKYYKHFLSGLRSIYLASCITSSDAVVVNVGHMERTTSIEKGICIVLDMVAAGWFKPFVTGGLSVFHDIADNIYNSRVESKVSEVLKKFYMIAGKQYDENMDFEWHLKQIALFYTELRKDEILNIGPENSKDSFWNFCKQKILPIQNRFFKNKDKGDDPIVKLAFNDIASLINYIEYNADAMVKESTPFLAQIGSRVKTKLGKTWEEVVKSNPANIVEYKFSQIENNLSEFNTIIQKMKLGQWASLPLSYISINPWSLYFLKLSWSGEQRGINHFCNKEYYKKECEKKNIPCEEQDLNHFMLLLLYKMCKLNDENIRTLKKEINDNNEKHGSMEIVIDELIGVQGPYEKNIHNFAKKNKDIIELARTQAPQLFVTERNIDLCIQDEKHKKDAKDILKLKSSDQFVESCLKRVCPKLDEYRKAQAEKARMNIKYENVGVDGVMAFEIFKHTDEHNEVLNLGNV
>NZ_CP015010.1|WP_045799169.1|358194_360297_-|hypothetical-protein
MSSLKEQFDADKYFLITQTNEFLANNKQDPLHTNRDEVREAVKSGNFTEALQKLEILREERTGITLTKIDPLIEGTTPIIIRDARNAKDPRELGTESFEMQYLNVIRAAIDIAEIEGKPEALKTELKKQAVDFIDSFHKDNEKNSQMQISPNVKDKINDIAILLENNGIKEVHKKLNVAKDFQNFNDEHCNIATLSNIKDKNGKDHTVIEAEVALKGITDEQKAEYQNRADKDWFKKMPSWERQLVNKYAETIKEGEHVIPTQLRQIVGMKNAFEKITAIAEENKPIEIIHNSKHAGTLASISRDKESQQRITDLNTKQAQEWMGDHKLHANTLNSGAANFVVPHPDAKLVTLTKRAIDHVGGRYTNTAFNKFRKIAGFNHFGGTKEQLNDLANNLPKEANFKDIATHLKPRGKLERLFGINKPKVDLKIMLNTEFNAGRLSKQAHEILTNAASLKQDIEKADAIFYRGADKENISSSISRKLNYLSNQISNSNDSIFKDVPKHETLTMCASGKDRTGLAEHDQTSTAIANRLGIEVKAADEQLLKAGHTAGQAGGVYAGGATIGCYGTLKVTAQGFPESRQESLKSMIEPSGANNKIKKLEKGQVINEPVEQKKAKETPNPYQTTNYEITANIQTPSVVVTTPKNELTELTELIPDLNKAQQKIIYNPKVELGNGEKITSNVTFAQKVNQRNKDNNIGR
>NZ_CP015010.1|WP_045799168.1|360674_363248_+|ATP-dependent-chaperone-ClpB
MNIDKFTAHAKSAITNCQHIAAKNDHQQILPLHLLASLFNEDTGIIRTLINNSGGNLNILADQVQVELNKIPKVQVDGGGTIYSSAELLKVLQRADDLAKNNGDSFVTIERILEALSFDNTIAGKILTNNGISSKKLAASILQLRKGKKADTESAENSYDALKKYGRDVTELAESGKLDPIIGRDEEIRRTVQVLSRRMKNNPVLIGEPGVGKTAIIEGLAQRIFSKDVPETLINCRIIELDMGALIAGAKYRGEFEERLKAVLGEIKESSGEIILFIDELHLLVGTGKTDGAMDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAAFARRFQPVYVSEPTVEDTISILRGIKEKYELHHAVRISDSAIVAAATLSNRYITDRFLPDKAIDLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKESDEHSKKKIEHLTAELEKLESNSYDMSSKWQAEKSKIQGQQKLKEELDRARIDLERAERDANLAKASELKYGIIPEIMKKIQETENADSKGLKEIVSESDIASIISRITGIPIDTMLSSERERLLVMEQKLRESVIGQDEAIKSVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYVGYDQGGVLTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKEGEDTYKVKDQVMEYVKMVFKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEVSSGKIVKITAKKEELKIQIID
>NZ_CP015010.1|WP_011478023.1|363284_363530_+|hypothetical-protein
MQGEYMQKKLTISIDEAVYRNLYSVIGEGKISKFIENIIKPYLINEQLKASYEEMAQDEKREKEANEWIEGLIQDDFNEKR
>NZ_CP015010.1|WP_011478024.1|363516_363843_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MKRGEIWWVNFDPSVGGEINKIRPAIIISNDAANEVLNRIQVIPLTSNVSKCYPWEVYVIVNGKQSKAMTDQIMTASKLRLKSKISTITSQEMLSLEYALKLQLGIYL
>NZ_CP015010.1|WP_011478025.1|364940_365201_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MEYTLCFSKTSLKNLVKIFANKRKVILEKLEQLRLDPYKTNNNIKKLIGYDAYRLRVGDYRVIYKINQGRLEILVINIDVRGEVYK
>NZ_CP015010.1|WP_011478026.1|365197_365560_+|helix-turn-helix-transcriptional-regulator
MSDKHIIEYQGKPAFVVLPFNEYQELINFKKRHITDEELYLEGIAKNEEYFPEELVQKILSGENPIKVYREYRGLSQEQLATKIGKTKQYISAIEKGSRTGTIDTLKKLSTVLNIDLDML
>NZ_CP015010.1|WP_012152284.1|365611_366454_-|class-I-SAM-dependent-methyltransferase
MTHDNNLKQKNSYILGVGKAGAKNLDFQHQMLKQHSIEQLEKAGLKESTIIWDIGCGNGTMTEIMASRVGDNGQVYAVDISEQQIQIAQQRIKNAGLKNVTFIVSDLYSLSNNDYPKADIVYSRLLLMHLKNPVEAIKLMSSLLKKEGIISLQESDLSSTLQKLNNQETNESFKRYYNLVMTYGQINGVHYDIGNKLANICQSLNIFSKVEHYVSSYDFNEYKDLLLARYDEFKDRVVLARLITEEESLQLRENLQVFFNSEELIKMNLKINQHHLLLTI
>NZ_CP015010.1|WP_012152285.1|366573_366789_+|hypothetical-protein
MGGYGLCVSVQCFYGSETVIISHPAVKPALPAWMQNRHCEERSDVAISENNDEIASSKLTVFPRNDKKITK

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Crispr_ID: NZ_CP015010_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015010_2

767881-768134

Orphan

Consensus_repeat	Method
AGAAAGCAATAATTTCACTATTTCAAGTTTATCACCATTAATAGCTTGCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP015010_2

>merge|NZ_CP015010|2|767881-768134|CRISPRCasFinder
AGAAAGCAATAATTTCACTATTTCAAGTTTATCACCATTAATAGCTTGCTGTAAAGGAGTTGTTTGATACTGGTTTTTTTGGTTAATCTCAAGACTTTTACAAGAAAGCAATAATTTCACTATTTCAAGTTTATCATCATTAATAGCTTGCTCTAAAATAGTAAATCCATAGATGTTTTTCTTATTAACTTCGATATTTTCATGAGAAAGTAGTTTTTTTACTATATCTAGTTTATTAAACGTAATAGCATAAT

>NZ_CP015010|2|2|767881-768134|CRISPRCasFinder
AGAAAGCAATAATTTCACTATTTCAAGTTTATCACCATTAATAGCTTGCT	GTAAAGGAGTTGTTTGATACTGGTTTTTTTGGTTAATCTCAAGACTTTTACA
AGAAAGCAATAATTTCACTATTTCAAGTTTATCATCATTAATAGCTTGCT	CTAAAATAGTAAATCCATAGATGTTTTTCTTATTAACTTCGATATTTTCATG
AGAAAGTAGTTTTTTTACTATATCTAGTTTATTAAACGTAATAGCATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015010.1\|WP_011477008.1\|763333_764680_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP015010.1\|WP_041808551.1\|761535_762372_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226483
NZ_CP015010.1\|WP_045799029.1\|772982_773840_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|251822
NZ_CP015010.1\|WP_011477002.1\|754718_755231_+\|DUF3576-domain-containing-protein	unknown	unknown	gnl\|CDD\|371898
NZ_CP015010.1\|WP_045799028.1\|773848_774232_-\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379208
NZ_CP015010.1\|WP_011477015.1\|771765_772377_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP015010.1\|WP_045799030.1\|771095_771776_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP015010.1\|WP_143549752.1\|755257_755458_+\|palindromic-element-RPE4-domain-containing-protein	unknown	unknown	unknown
NZ_CP015010.1\|WP_011477023.1\|778792_779707_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|223689
NZ_CP015010.1\|WP_045799031.1\|758102_759539_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP015010.1\|WP_011477012.1\|769785_770364_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP015010.1\|WP_011477019.1\|774458_775445_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|365980
NZ_CP015010.1\|WP_011477005.1\|759519_761280_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP015010.1\|WP_011477016.1\|772426_772969_-\|septation-protein-A	unknown	unknown	gnl\|CDD\|234704
NZ_CP015010.1\|WP_045799032.1\|755405_757901_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP015010.1\|WP_012152108.1\|777078_777705_+\|dioxygenase	unknown	unknown	gnl\|CDD\|226016
NZ_CP015010.1\|WP_081178409.1\|764831_766892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP015010.1\|WP_011477013.1\|770357_771047_-\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP015010.1\|WP_012152121.1\|752472_753003_-\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|274035
NZ_CP015010.1\|WP_052691006.1\|753028_754519_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690

Protein	Function_ID	Function_description	E-value
NZ_CP015010.1\|WP_011477008.1\|763333_764680_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP015010.1\|WP_041808551.1\|761535_762372_-\|hypothetical-protein	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	3.50817e-57
NZ_CP015010.1\|WP_045799029.1\|772982_773840_-\|hypothetical-protein	gnl\|CDD\|251822	pfam03239, FTR1, Iron permease FTR1 family.	1.53093e-52
NZ_CP015010.1\|WP_011477002.1\|754718_755231_+\|DUF3576-domain-containing-protein	gnl\|CDD\|371898	pfam12100, DUF3576, Domain of unknown function (DUF3576). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.	2.39594e-41
NZ_CP015010.1\|WP_045799028.1\|773848_774232_-\|cupredoxin-domain-containing-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	8.29607e-36
NZ_CP015010.1\|WP_011477015.1\|771765_772377_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	3.02298e-55
NZ_CP015010.1\|WP_045799030.1\|771095_771776_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	8.36554e-66
NZ_CP015010.1\|WP_011477023.1\|778792_779707_+\|S49-family-peptidase	gnl\|CDD\|223689	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.26761e-76
NZ_CP015010.1\|WP_045799031.1\|758102_759539_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.69843e-173
NZ_CP015010.1\|WP_011477012.1\|769785_770364_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.50343e-61
NZ_CP015010.1\|WP_011477019.1\|774458_775445_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|365980	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.	1.7255e-05
NZ_CP015010.1\|WP_011477005.1\|759519_761280_+\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.68756e-14
NZ_CP015010.1\|WP_011477016.1\|772426_772969_-\|septation-protein-A	gnl\|CDD\|234704	PRK00259, PRK00259, intracellular septation protein A; Reviewed.	8.34469e-61
NZ_CP015010.1\|WP_045799032.1\|755405_757901_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP015010.1\|WP_012152108.1\|777078_777705_+\|dioxygenase	gnl\|CDD\|226016	COG3485, PcaH, Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism].	4.68087e-52
NZ_CP015010.1\|WP_081178409.1\|764831_766892_-\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.93298e-23
NZ_CP015010.1\|WP_011477013.1\|770357_771047_-\|RNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.27352e-87
NZ_CP015010.1\|WP_012152121.1\|752472_753003_-\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|274035	TIGR02215, conserved_hypothetical_protein, phage conserved hypothetical protein, phiE125 gp8 family. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family. [Mobile and extrachromosomal element functions, Prophage functions].	3.1817e-12
NZ_CP015010.1\|WP_052691006.1\|753028_754519_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	1.90113e-97

>NZ_CP015010.1|WP_081178409.1|764831_766892_-|hypothetical-protein
MEAKVNLLPAKELYSIIEGNLESIIQDIYPLEYDKQKEAIKHIAEQISSNDSIQTKDNYPEIDEEITEINQLLAEQKKRQAFNQEEQKKICKQTAELIESEILENIGSSTELEKKYLNKLNQITSIEEKKALINEYKTSLQDLNKQNFQNLQKQQSNLRGRKEVTNVEEHKLVKEGIVTKEEIEPYLSNYDLLCTLAEHSHMTDDDGVSLVKKLFEAARNFYPDKPLQGLKDLMDIPDEKSVDLLKDNILKLLSDKQISFIDINYIESRELYKINEIDIKSNFKLIECVIAGICPLTLRKLIELGKIDNFDKKELELIAAFFEKDTKNLSNYQGIKISNELSKILLGLHESQDSTIYELIEFILDDLIQFINVTELGKEIFPIATFFDKNDIIRTLMEEKIDFYSRSVDNKVIVNFDEDIFRYLINLEEFDINAEDKNGNTLLHAAIDQGKSEVVKFLTSYKNLEVNTKDLGGNSPLHLAIKSNNPEIVEMLLSYENINVNEKDKYGDTTLHKAIRSYNHKIIEMLLLREEIDVNEKDNQGETPLHGAVKSNRPEIVKMLLLRKETDVNEKDNQGKTPLHKAVDNDKPEIVKVLLSREDIKINELNKGKETALLIAFSNEKINIVKMLLSHKNMDTKQKEIFSFLEISREDEAKTPINDGVSILGASEAESYGESLHNKDASSYSL
>NZ_CP015010.1|WP_011477008.1|763333_764680_-|DNA-repair-protein-RadA
MTKEKKHYICSNCGNTSPKWSGQCFDCGVWGSIIEEKVISNKNIAKIGSKQDFEQLSSNVTDQVRISTPIGELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASKVKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQTIATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLSCHVTKDGQLAGPKLLEHLVDTVLYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPSELFLMKREQNVIGTAIFAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKINEPASDLAVAASLISAATNKPLPEHSVFFGEISLSGEIRKTAKAEARIKEALKLGFNNIICSKSENLTHDFISSIAHLKDLKLLLGSS
>NZ_CP015010.1|WP_041808551.1|761535_762372_-|hypothetical-protein
MNKQDYTTLLAHEHLHNWIGKKIRNTSDLNYWWSEGFTDYYSRVLTLRSGVITVEEFVEEFNQFFKDYYLSPVINEPNSKIEEDSWRNYAVSKLPYYRGFVFAVYLNNLIKENNKSKSLDNVMLDLFKTAKQKEFSIDYFKQIIKNYIPKGIDKGIDEYIEQGNTIDLSDLMNVLPIEKIKIPFCDLGFDIKTSFDEGIIKGIDIESNAYKAGLRNGNKLIEVSLPKGFDYSDQIATVKTTKGEFKYKPESSNKKDIYRFKPDLSKEDKLKIKRFFNS
>NZ_CP015010.1|WP_011477005.1|759519_761280_+|hypothetical-protein
MKKQTPNLLLVFTFSLFLTNCSEPTRDANGLLTDNQSTVIRNYIISQNAKNLKVNLKGQFGSNLRGLKLIGVKLIDEDLSEVDLTSCEILRADFTGANLQKAILTNAIIQESNFANGTIQNVSGYNSDFQGSIFDNITLQDINFVQANFSNTAFSKTTIKNVNFENAKLENILWNNNTLDGVNFQKAVLKSNSFKNTNIENSIFYGADLEGSIINNTNFTNNYFESSDLSRAKLTAVIIKDSNFTQSIFNEINFNNVQANNSIFSYTTFQGSTLQNISIVKCDLQSSVISGSTLTQFKVDTSLLNNVSLNDIKFNNLSIKNSNANFARLNKMAGVNITFNNLSWTNNIFSNNDVKQFTVINTDLNNSELSNSNISNSQFSNVNFSKTLMQNVNFSDVKITSGNLNQIALIGSNLTNITFNNSSFYNSQINNSHYMNSTFVNTNFASNIILNSEDFSKFPSNTVITSVKDLQKTTNLANMNLANFDLSNLIFNAVNFSGAIFKNANLTNTAIQNSTMEKADFSNAIVNKTDFSNSTLTDSIFKSAKIDQANFTGSNLTNTDFTEAEIKNTQLDKATTTGVKGIDNSN
>NZ_CP015010.1|WP_045799031.1|758102_759539_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSLIDVLIVDDEEDIRNIIAAILKDEGFNPKVAANSTQALKILAEKPVSAVILDIWLQGSEMDGLGILEVIKKRYPLMPVIIISGHGTIETAVNAIKMGAYDYIEKPFNNDKLVILLKRACEVTKLKRENIDLKSKVIDKTELVGNSTITLKYKAEIDKAASSSSRIMIHGKVGSGKELTARLIHKKSKRVNNLFIIFSPTCMTLEKINQELFGEAEKQESNNNSNKRPTILEFANNGTLYIDEVSNIPVPIQIKLLKFLKDHTIKKPCGKIVKVDIKIITGTSKNIQEEVNNGRFLEDLYYRLNVSSLKVPSLFERKEDIPLLVKYFVKQLSKFSGLKERVFADETIAALQSYEWPGNIRQLRNVVEWTLIMNPITSGNNEIIKPYMIPSEILANSVNLTKLEDSFDMLSMPLREAREVFERQYLSAQMSRFNNNILKTSSFVGMERSALHRKLKLLSLHISPTGRINEEEYEEANA
>NZ_CP015010.1|WP_045799032.1|755405_757901_+|leucine--tRNA-ligase
MNIEQKWQQIWQEEKAFEVPNESSKPKYYVLEMLPYPSGKIHVGHVRNYSIGDVVARFMTMQGFNVLHPMGWDSFGLPAENAAIKNNSHPKEWTYSNIENMKKQLKSMGFSYDWSREINSCDPDYYKHEQKFFLELYERNLAYQKESLVNWDPVDNTVLANEQVVDGRGWRSGAIVEKRYLKQWFLKITNYAEELLNEIPNLTEWPEAVRSMQEKWIGKSVGANFRFKIKDNEDVIEVFSTKPETIFGASFVGIAFNHPIIEKLVSKTPEIENFIAKCSNITGSAELDKAEKEGIFTGLYVVHPFDSNITLPVVITNFVLMDYGTGAVFGCPAHDQRDHELAVKINLPIKQVIEADTDVQKAAYTEDGIIINSGFLNGLSTNEAKQRVIEEFEKLGIGKRTINYRLKDWGISRQRFWGCPIPIIHCDSCGLVPVPDSDLPVTLPDDVKFDGHGNPLDNHPTWKHVNCPKCSKPAIRETDTFDTFFESSWYFTRYCNSQALEMTDKKACDYWLPVDKYIGGIEHAVMHLLYARFFTKVMNEQDYVSVREPFKGLFTQGMVLHATYKDEHNNWLYPEEVIKKGNEFFHKENGGLVTQGRIEKMSKSKKNLIDLETMQQQYGADAIRFFVLSDSPPEKDLEWSASGIEGSARFINKLEQMQETIIKLSDNKNTNKELKRLIHFTIKHVAEDIKHFALNRAIARMRELFNAISSEINKEEIDVQNAKHGFNVLIQLLNPFIPHITEEIWQKLGHKTFLYNAAFPTFDESMLELDTYVIAVQVNGKLRDTYEFNTSASEDEIKQIAINLPKVQKFLEGKEPKKIILVPKKIINIIC
>NZ_CP015010.1|WP_143549752.1|755257_755458_+|palindromic-element-RPE4-domain-containing-protein
MIYSRDPVKNTNKISIFYYFLDTVDKPRYDIEAFFDPHRMTYIPKEIKKHEYRTEMATNLARRKSL
>NZ_CP015010.1|WP_011477002.1|754718_755231_+|DUF3576-domain-containing-protein
MNKNIKLFFAAIFIVFSVGNNIILADDYPKSEQEQKWDEVGSIAGEEGLVFRPGRIKNESTKAAGCSINKYLWQASINTLSFIPLASADSNGGVIITEWYSPPATPNFRFKINIFIKDDVIHPDAIEVKVFEEVLKNKQWVMNENTSNLAITLEDKILRKAREIYINSAK
>NZ_CP015010.1|WP_052691006.1|753028_754519_-|phage-major-capsid-protein
MKKIIYSNQTFDNIEIKSSTNSEVVITGYASVYNIADHHNDLIVKGAFANVVYQNIKFLWQHDSKKPIGIISHLIEDDHGLKMEAVINNKVKAGREAIELIKQGAIDGLSIGFYIKNSVFNDAKQRVITEADLLEISIVTFPANQSAKILYITKGQEVESNTEYSNQITELQEKVHNIQNILERPNNINIEDQEQKTAFINYVRKGEENSFTQKSSLNSGAEAGGFLILQTLYNSIITEVNARSPMRQLASIETISTNALDIISEDGKFNSGWIGEVEARDETNAAKLKQQRIFVHELYAQPKASQALLDDATIKIETWLSERLRDSFVKAENEAFINGDGVKKPRGILSPDHDKIEKVKMGNKITTDNLLDFINSLKEEYLANATLLMNRATLSEVQKLKDNQGRFIWQQSLSESFKQTIFGIPVVCSSNMKPVDKDTAAIAIGDFKSGYKIVDRSGINIMRDPYTEKPFVKFYAVKRVWGDVVNPEAIKIGVFN
>NZ_CP015010.1|WP_012152121.1|752472_753003_-|phage-gp6-like-head-tail-connector-protein
MFKKNNFQITKIFPQEVWSLEQVKNYMRVEANYDDDLILGLIDAAITAAENFTKLNFISKQIKFVCNIYGKREFLLKYNPVLRILKVTKKFKDQENEITLDDYVIDQNILALTKSLNNEELTVEYISGYDKDNIPHAIKHGIMLHIAEMYDRQAQNCVGLSKEVKNLYLPYRNIRM
>NZ_CP015010.1|WP_011477012.1|769785_770364_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MLKIISGKFQNQKIPIAKNIKYRPSTGKLKEAIFSILTSGEFIGNKLFNENIKVLDLFAGSGSLAFESLSRGAGFATLIDIDAFSLKIAEEFAKTLNIHNKVNLVNINALNLPKANTAFDLVFVDPPYHNKIVTKVMKLLIKNNWLNTDAIIVVEMAKTDDYVLDENIEIIREKLYGNTKLLVLKYNCYLAA
>NZ_CP015010.1|WP_011477013.1|770357_771047_-|RNA-pseudouridine-synthase
MQRLAKLISNAGICSRRDAEKLILDGQVKVNGIIVTSPATNVDTDNQVEVSGSLITSSQKSRLWIYYKPVGLITTHKDPLSRKTVFEQLTGLPRVISIGRLDLNSEGLLLLTNNGDLARQFELPSSKLKRVYHVRAYGNPDPLLKSNYKNLEIDGIFYNPQSIKLLRKNSTNSWLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKLDNLKPNEYREVTKKLYKC
>NZ_CP015010.1|WP_045799030.1|771095_771776_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNHKFVLLILLIFYCFFLSGCNNSKKTPCSRKHSHKELSKDDPHNLVYKGYYKVGSQYKIKGKTYKPNAPKSFTETGYASWYGGGGDKFHGKKTANGDMFNKNLLTAAHKTLPLPCLVKVTNKTNNKSVILMVNDRGPFKPNRIIDVSAKAAEVLAFKKQGLAKVKIEYLHAETEKFLKNIKVNKSSNKTLAKSSKKPSSTKVANNKCSINCHIKLVNLKYKLTVN
>NZ_CP015010.1|WP_011477015.1|771765_772377_-|BON-domain-containing-protein
MLRILVFIALAFNLSGCLPAIFTAATTTGIVASKDQPISGTLNDSRISAGIKADLVKNNFKELGAKIKVEVSERRVLLTGNIQKEEDALKAVEIAWNQKGVTEVINELKVSKNSNHFDLAQYTRDSMITAQIKAKNLVRKDIKFANYTVLTVDNVVYLFGVARSEEELENFADLASKIKGVEKVVCYAKIVDNFNSNTEGDES
>NZ_CP015010.1|WP_011477016.1|772426_772969_-|septation-protein-A
MFKLLSEIGPVVAFFAGFFYGGGIQSATLYMLITSVICITLCYIIDKKVSRLSIISTAVLLVSGIITLISGDSMYIKIKPTILYVIFGIIFLTSGIKKNPFIKYALESIIRLKEESWITLSYRTATFFFFMAIVNEIVWRNFPDETWVKFKVFGVVPITFVFILLQLPLLLKNKLPDSKI
>NZ_CP015010.1|WP_045799029.1|772982_773840_-|hypothetical-protein
MFKIALIVFRECLEISLLVGIILAVTKHIEKSRIYIIAGGMLGVVSASIFAFFTRKLSLSFGGMGDELFDSGIMILITILLSWTIIWMQGYGTKVKQHINNISTKIHEGNSSYLMLVFLVASTILREGTEIIILVYSISSVETITSSNYIQGLIIGATSGFLLGLIICFGLIKIANQKYIFKISTILLMLIAGGFAASAAGILTSSGLVMFLSDQVWDSSWLVADRSMIGKILHIVTGYIARPNGLQVLAYFTTILLINIFIQVRLRYSKNILAPLPKENTQQIS
>NZ_CP015010.1|WP_045799028.1|773848_774232_-|cupredoxin-domain-containing-protein
MQMNQKNKNIIILASLIFLLIAGISLFISANKNSNNNEEILEIKIVIKDHKFVPDIVEVPKSTKIRLVIHNEDDTVEEFESHDLHREKIVMSHDSIKIILAPLKPGKYDFFGDFHQDTAQGFLIVKD
>NZ_CP015010.1|WP_011477019.1|774458_775445_-|peptidyl-prolyl-cis-trans-isomerase
MQKLLSLIIVALVLYNIAKLKISSDDNNATIIEQASVNNSANNENQVSINNDPPVSLNGNLFERTISKIVINALKTEEGKAFFENILQPLNKPIDTKDYTIPVHKDLITSLFKINTIGTGNVGPASCGHVVTVFYQISDMSNNLISEDTKTFTIGSGAVMLGLDNVIVGMNVGQAREAIIPAKYAASVGANNDNADSAYRVNVMLKSILPQNFINSNEVKIYDNEIAYRIPLLCGEKIAFNAKITRLANGEVLYDSKAKGQKVDMKIGDITYPLIFSYALQGKVPVGTRTVIAKGQTFKALGSNINKIISQESLPLNEYLMLEINDFK
>NZ_CP015010.1|WP_012152108.1|777078_777705_+|dioxygenase
MKKFIFCFLCFWTLNIFAASKGYPNKLNRCKITRNIFNDYEPKVFEPTNNLLRKTGQISRFYGEKVIIKGIVLDQNCVPVADAKVYLWQAGSGGKYPYEPLKTRVDKRRFTGKKDSSFTGSGTATTNNKGEYYFVSMLPYKSAGNLKSVNIRVEHADLKTLETRLDLSNKNICSNECGEINPALIEPQQHLRSYCFDLVLQGATLKRY
>NZ_CP015010.1|WP_011477023.1|778792_779707_+|S49-family-peptidase
MNEVNKSTIANAEFEPIIAKPQISKLEQLFASIFGDSKEVVAVLRLNGVIGKVSTVQSGLTLESLNELIEKAFKIKKLKALCLIINSPGGSPVQSELIAKRIRTLAKEHKIKIYSFIEDMAASGGYWLACAGDQIYALHSSIIGSIGVVSSGFGFHEAINKLGIERRVYTEGKNKAVLDPFKPINKEDVKIIKDLQKQVYEHFVDYVKTRRVGKLTQQDDILFNGEFWAGRTALDYGLIDDLGDMYSTMKAKFGDNIKFQYLCAKQPWIKKKLGMASKILTDNFADSLINAVENKIINDKFDIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP015010_1	1.1\|353138\|42\|NZ_CP015010\|CRISPRCasFinder	353138-353179	42	NZ_CP015010.1	122041-122082	2	0.952

1. spacer 1.1|353138|42|NZ_CP015010|CRISPRCasFinder matches to position: 122041-122082, mismatch: 2, identity: 0.952

ttctttgccataatagctttttcttcttctctaccttgttgc	CRISPR spacer
ttctttaccatgatagctttttcttcttctctaccttgttgc	Protospacer
******.****.******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

704453 : 754519

Wolbachia_phage(18.18%)

capsid,head,transposase,tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011476926.1\|704453_705410_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.6e-50	46.5
WP_012152150.1\|705534_706092_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_045799047.1\|706105_707116_+	heme A synthase	NA	NA	NA	NA
WP_045799046.1\|707115_708021_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_045799045.1\|708050_709241_+	serine hydrolase	G1BSP8	Mycobacterium_virus	2.0e-13	26.0
WP_011476951.1\|709241_710063_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_011476952.1\|710174_711155_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_143549782.1\|711156_711240_-	palindromic element RPE4 domain-containing protein	NA	NA	NA	NA
WP_143549783.1\|711223_711310_-	palindromic element RPE4 domain-containing protein	NA	NA	NA	NA
WP_045799044.1\|711326_712304_+	pyruvate dehydrogenase complex E1 component subunit beta	A0A0K0KW14	Prochlorococcus_phage	2.2e-10	25.6
WP_012152146.1\|712296_713235_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_045799043.1\|713557_714577_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_011476958.1\|717141_717867_+	protein TolQ	NA	NA	NA	NA
WP_045799042.1\|717866_718298_+	protein TolR	NA	NA	NA	NA
WP_011476960.1\|718287_719259_+	periplasmic protein TonB, links inner and outer membranes	NA	NA	NA	NA
WP_045799041.1\|719435_720770_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_045799040.1\|720870_721869_+	phospholipase	NA	NA	NA	NA
WP_081178401.1\|721907_722567_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_011476926.1\|723120_724077_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.6e-50	46.5
WP_041804613.1\|724151_724892_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011476967.1\|725077_726184_-	DUF1460 domain-containing protein	NA	NA	NA	NA
WP_012152139.1\|726287_727172_-	FAD-dependent thymidylate synthase	M4QT16	Loktanella_phage	9.7e-90	54.9
WP_155980552.1\|727265_727385_-	palindromic element RPE4 domain-containing protein	NA	NA	NA	NA
WP_143549785.1\|727368_727455_-	palindromic element RPE4 domain-containing protein	NA	NA	NA	NA
WP_045799039.1\|727432_728122_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_155980516.1\|728123_728900_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_045799281.1\|729619_730468_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012152136.1\|730474_732244_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.5e-36	26.5
WP_045799038.1\|733905_735741_-	translational GTPase TypA	A0A1S5SF82	Streptococcus_phage	7.3e-23	41.0
WP_045799037.1\|735875_736604_+	hypothetical protein	NA	NA	NA	NA
WP_011476980.1\|736807_737362_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_011476981.1\|737373_738825_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_041804778.1\|739781_740075_+	hypothetical protein	NA	NA	NA	NA
WP_045799036.1\|740071_740797_+	DNA repair protein RecO	NA	NA	NA	NA
WP_045799280.1\|741619_742948_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012152130.1\|742959_744717_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.4e-60	29.3
WP_012152129.1\|744753_745095_-	hypothetical protein	NA	NA	NA	NA
WP_045799035.1\|745125_745800_-	hypothetical protein	NA	NA	NA	NA
WP_012152127.1\|745809_746883_-	peptide chain release factor 1	NA	NA	NA	NA
WP_011476992.1\|747058_748315_-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_081178405.1\|748459_748999_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.6e-16	34.8
WP_011476994.1\|749080_749428_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_011476995.1\|749587_750373_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_011476996.1\|750369_750963_-	TIGR02217 family protein	M4QP22	Tetraselmis_viridis_virus	6.4e-05	27.7
WP_081178407.1\|751045_751156_+	palindromic element RPE4 domain-containing protein	NA	NA	NA	NA
WP_012152122.1\|751212_751611_-	nucleotidyltransferase	NA	NA	NA	NA
WP_011476998.1\|751722_752133_-	hypothetical protein	NA	NA	NA	NA
WP_045799033.1\|752122_752461_-\|head	phage head closure protein	NA	NA	NA	NA
WP_012152121.1\|752472_753003_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_052691006.1\|753028_754519_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.3e-66	43.5

DBSCAN-SWA_2

1249194 : 1259594

Catovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045798883.1\|1249194_1251294_-	glycosyltransferase	A0A1V0SAH6	Catovirus	2.4e-09	35.9
WP_012151936.1\|1251501_1252554_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011477376.1\|1252547_1253681_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	2.1e-105	49.9
WP_045798882.1\|1253673_1254699_-	NAD-dependent epimerase/dehydratase family protein	K7Y9E1	Megavirus	6.0e-43	37.8
WP_011477378.1\|1254812_1255667_-	SDR family oxidoreductase	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	1.0e-35	33.0
WP_045798881.1\|1255847_1257185_-\|tRNA	glutamate--tRNA ligase	A0A2K9L0I5	Tupanvirus	5.0e-13	39.3
WP_045798880.1\|1257191_1259594_-	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	3.9e-109	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015010

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection