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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016695 Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015896 Lactococcus lactis subsp. lactis strain 229 chromosome, complete genome 2 crisprs cas3,DEDDh,csa3,DinG 0 0 16 0
NZ_CP016698 Lactococcus lactis subsp. lactis strain 229 plasmid p229E, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP016697 Lactococcus lactis subsp. lactis strain 229 plasmid p229D, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP016694 Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence 0 crisprs RT,csa3 0 0 1 0
NZ_CP016696 Lactococcus lactis subsp. lactis strain 229 plasmid p229C, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015896
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015896_1 1474689-1474867 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015896_2 1935433-1935527 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12923 : 54690 44 Lactococcus_phage(82.76%) terminase,integrase,transposase,bacteriocin,tRNA NA
DBSCAN-SWA_2 66906 : 111059 46 Bacillus_phage(44.44%) bacteriocin,transposase,protease,tRNA NA
DBSCAN-SWA_3 135993 : 185011 44 Lactococcus_phage(25.0%) holin,transposase,protease NA
DBSCAN-SWA_4 294144 : 302251 8 Catovirus(33.33%) holin,transposase NA
DBSCAN-SWA_5 477499 : 487008 11 Streptococcus_phage(44.44%) NA NA
DBSCAN-SWA_6 524038 : 562729 50 Lactococcus_phage(100.0%) holin,terminase,integrase,portal,protease,capsid,head,tRNA attL 526628:526658|attR 563549:563579
DBSCAN-SWA_7 680559 : 728516 40 Bacillus_phage(26.67%) protease,transposase,integrase,tRNA attL 699883:699942|attR 717351:717462
DBSCAN-SWA_8 986234 : 1046615 58 Lactococcus_phage(26.67%) holin,transposase,plate NA
DBSCAN-SWA_9 1087611 : 1101395 11 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_10 1110053 : 1118321 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_11 1121651 : 1193850 98 Lactococcus_phage(84.85%) holin,terminase,transposase,portal,integrase,protease,tail,capsid,head,tRNA attL 1115663:1115679|attR 1161860:1161876
DBSCAN-SWA_12 1607295 : 1617596 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_13 1634183 : 1735523 103 Lactococcus_phage(80.0%) holin,capsid,terminase,transposase,portal,plate,protease,tail,bacteriocin,head,tRNA NA
DBSCAN-SWA_14 1858991 : 1868850 9 Prochlorococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_15 2099287 : 2116568 21 Lactococcus_phage(83.33%) transposase,integrase attL 2099109:2099129|attR 2113599:2113619
DBSCAN-SWA_16 2272831 : 2339047 71 Lactococcus_phage(84.31%) holin,terminase,transposase,portal,integrase,plate,protease,capsid,tRNA attL 2267963:2267981|attR 2315563:2315581
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP016694
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 39786 : 49080 11 Streptococcus_phage(37.5%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage