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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016714 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence 0 crisprs RT,csa3 0 0 0 0
NZ_CP015906 Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome 2 crisprs cas3,DEDDh,csa3,DinG 0 0 15 0
NZ_CP016713 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015906
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015906_1 1469901-1470079 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015906_2 1927806-1927900 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 35339 : 185194 156 Lactococcus_phage(57.69%) terminase,transposase,tRNA,protease,bacteriocin,holin,integrase attL 34731:34758|attR 49660:49687
DBSCAN-SWA_2 294326 : 302433 9 Catovirus(28.57%) transposase,holin NA
DBSCAN-SWA_3 475059 : 487190 14 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_4 524241 : 563219 58 Lactococcus_phage(100.0%) terminase,tRNA,protease,capsid,head,portal,tail,holin,integrase attL 526810:526840|attR 563731:563761
DBSCAN-SWA_5 582004 : 600152 32 Lactococcus_phage(89.66%) integrase,head,protease attL 582262:582290|attR 597412:597440
DBSCAN-SWA_6 695890 : 754872 45 Bacillus_phage(25.0%) integrase,transposase,tRNA,protease attL 715214:715273|attR 732682:732793
DBSCAN-SWA_7 1082821 : 1096605 13 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_8 1105263 : 1113531 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_9 1116861 : 1159657 68 Lactococcus_phage(95.24%) terminase,transposase,protease,capsid,head,portal,tail,holin,integrase attL 1110873:1110889|attR 1157070:1157086
DBSCAN-SWA_10 1602507 : 1612808 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_11 1649925 : 1727896 90 Lactococcus_phage(87.27%) terminase,tRNA,portal,head,tail,holin,integrase attL 1645637:1645653|attR 1727974:1727990
DBSCAN-SWA_12 1851364 : 1861223 9 Prochlorococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_13 2033790 : 2129229 99 Lactococcus_phage(83.05%) terminase,transposase,tRNA,protease,capsid,head,portal,tail,holin NA
DBSCAN-SWA_14 2167709 : 2184990 25 Lactococcus_phage(85.71%) integrase,transposase attL 2167531:2167551|attR 2182021:2182041
DBSCAN-SWA_15 2344825 : 2376368 46 Lactococcus_phage(83.72%) terminase,protease,capsid,head,portal,tail,integrase attL 2358169:2358183|attR 2379050:2379064
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage