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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014986 Lacticaseibacillus paracasei strain IIA plasmid unnamed1, complete sequence 1 crisprs NA 0 1 0 0
NZ_CP014988 Lacticaseibacillus paracasei strain IIA plasmid unnamed3, complete sequence 1 crisprs NA 0 1 1 0
NZ_CP014985 Lacticaseibacillus paracasei strain IIA chromosome, complete genome 3 crisprs DinG,csa3,DEDDh,cas3,WYL,cas9,cas1,cas2,csn2,RT 0 18 6 0
NZ_CP014987 Lacticaseibacillus paracasei strain IIA plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP014986
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014986_1 9057-9134 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP039709 Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence 42834-42865 0 1.0
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP014986 Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence 9080-9111 0 1.0
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP031786 Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence 17816-17847 1 0.969
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP017266 Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.25, complete sequence 28754-28785 1 0.969
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP044366 Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence 6464-6495 1 0.969
NZ_CP014986_1 1.1|9080|32|NZ_CP014986|CRISPRCasFinder 9080-9111 32 NZ_CP012189 Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence 18354-18385 1 0.969

1. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP039709 (Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence) position: , mismatch: 0, identity: 1.0

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaaggtctgcggatatttttac	Protospacer
********************************

2. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP014986 (Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaaggtctgcggatatttttac	Protospacer
********************************

3. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP031786 (Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence) position: , mismatch: 1, identity: 0.969

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaatgtctgcggatatttttac	Protospacer
************* ******************

4. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP017266 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.25, complete sequence) position: , mismatch: 1, identity: 0.969

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaaggtatgcggatatttttac	Protospacer
**************** ***************

5. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP044366 (Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence) position: , mismatch: 1, identity: 0.969

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaaggtatgcggatatttttac	Protospacer
**************** ***************

6. spacer 1.1|9080|32|NZ_CP014986|CRISPRCasFinder matches to NZ_CP012189 (Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

taaatgtgtaaaaggtctgcggatatttttac	CRISPR spacer
taaatgtgtaaaaggtatgcggatatttttac	Protospacer
**************** ***************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP014985
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014985_1 1138809-1138939 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014985_2 2637446-2639792 TypeII NA
35 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014985_3 3019841-3019961 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NZ_AP012543 Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence 217-247 1 0.968
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NZ_CP029549 Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence 1377-1407 1 0.968
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 KC171647 Lactobacillus phage PL-1, complete genome 3062-3091 2 0.933
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 NC_022756 Lactobacillus phage J-1, complete genome 3062-3091 2 0.933
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 MF999224 Lactobacillus phage LJ, complete genome 19462-19491 2 0.933
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 MH983004 Lactobacillus phage BH1, complete genome 3062-3091 2 0.933
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NZ_CP032639 Lactobacillus paracasei strain ZFM54 plasmid unnamed2, complete sequence 6553-6583 3 0.903
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NZ_CP032639 Lactobacillus paracasei strain ZFM54 plasmid unnamed2, complete sequence 13194-13224 3 0.903
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NC_021573 Lactobacillus paracasei plasmid pLP5402, complete sequence 42-72 3 0.903
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 AJ251789 Lactobacillus casei bacteriophage A2 complete genome 3074-3103 3 0.9
NZ_CP014985_2 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637549-2637578 30 NC_004112 Lactobacillus phage A2, complete genome 3074-3103 3 0.9
NZ_CP014985_2 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637482-2637512 31 NC_013543 Lactobacillus paracasei subsp. paracasei plasmid pCD01, complete sequence 7656-7686 4 0.871
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 MT774393 CrAssphage cr127_1, complete genome 42841-42870 5 0.833
NZ_CP014985_2 2.17|2638539|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638539-2638568 30 NZ_CP041073 Bacillus tropicus strain LM1212-W3 plasmid p10, complete sequence 4254-4283 5 0.833
NZ_CP014985_2 2.23|2638935|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638935-2638964 30 NZ_CP031268 Staphylococcus warneri strain 16A plasmid unnamed2 6674-6703 5 0.833
NZ_CP014985_2 2.25|2639067|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639067-2639096 30 MK448743 Streptococcus phage Javan371, complete genome 13502-13531 5 0.833
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 NZ_CP039224 Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence 31378-31407 6 0.8
NZ_CP014985_2 2.6|2637813|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637813-2637842 30 MN176219 Bacillus phage 000TH010, complete genome 28194-28223 7 0.767
NZ_CP014985_2 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638011-2638040 30 NZ_CP010135 Escherichia coli strain D1 plasmid A, complete genome 19143-19172 7 0.767
NZ_CP014985_2 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638011-2638040 30 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 214547-214576 7 0.767
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP016462 Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence 79182-79211 7 0.767
NZ_CP014985_2 2.12|2638209|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638209-2638238 30 NZ_CP034186 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence 376623-376652 7 0.767
NZ_CP014985_2 2.12|2638209|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638209-2638238 30 NC_019313 Sinorhizobium meliloti plasmid pHRC017, complete sequence 183578-183607 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 950310-950339 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 MT601272 Bacillus phage vB_BsuS-Goe11, complete genome 21559-21588 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 MT366947 Bacillus phage Hyb2phi3Ts-SPbeta, complete genome 20807-20836 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KY030782 Bacillus phage phi3T, complete genome 20807-20836 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 MT366948 Bacillus phage Hyb3phi3Ts-SPbeta, complete genome 20807-20836 7 0.767
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 MT366945 Bacillus phage phi3Ts, complete genome 20807-20836 7 0.767
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 JN638751 Bacillus phage G, complete genome 253284-253313 7 0.767
NZ_CP014985_2 2.20|2638737|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638737-2638766 30 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 104218-104247 7 0.767
NZ_CP014985_2 2.20|2638737|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638737-2638766 30 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 105358-105387 7 0.767
NZ_CP014985_2 2.35|2639727|30|NZ_CP014985|CRISPRCasFinder,CRT 2639727-2639756 30 NZ_AP018520 Sphingobium sp. YG1 plasmid pYGP1, complete sequence 189876-189905 7 0.767
NZ_CP014985_2 2.7|2637879|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637879-2637908 30 NZ_CP028945 Vibrio sp. dhg plasmid unnamed1, complete sequence 23136-23165 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 950150-950179 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 950190-950219 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 950270-950299 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 950390-950419 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019135 Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome 54737-54766 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019114 Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome 54643-54672 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019138 Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome 54649-54678 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019122 Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome 54638-54667 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019055 Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome 54736-54765 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019038 Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome 54423-54452 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019068 Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome 54642-54671 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019137 Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome 54733-54762 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019157 Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome 54737-54766 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019087 Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome 54638-54667 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019076 Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome 54642-54671 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019065 Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome 54636-54665 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019026 Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome 54644-54673 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019081 Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome 54643-54672 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019033 Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome 54489-54518 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 NC_023584 Synechococcus phage S-MbCM100, complete genome 55431-55460 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019153 Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome 54638-54667 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019158 Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome 54642-54671 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019067 Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome 54643-54672 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019039 Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome 54637-54666 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019030 Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome 54641-54670 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019163 Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome 54633-54662 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019116 Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome 54452-54481 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019088 Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome 54724-54753 8 0.733
NZ_CP014985_2 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638407-2638436 30 KJ019084 Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome 54637-54666 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NZ_CP032828 Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence 148041-148070 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NZ_CP041205 Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence 533174-533203 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NC_015184 Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence 399866-399895 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 CP047390 Agrobacterium sp. CGMCC 11546 plasmid pB 172783-172812 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NZ_CP033036 Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence 283508-283537 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NC_003064 Agrobacterium fabrum str. C58 plasmid At, complete sequence 450407-450436 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NZ_CP032919 Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence 311399-311428 8 0.733
NZ_CP014985_2 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639397-2639426 30 NZ_CP033029 Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence 311483-311512 8 0.733
NZ_CP014985_2 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637681-2637710 30 NZ_CP053977 Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence 19569-19598 9 0.7
NZ_CP014985_2 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637681-2637710 30 NZ_CP034684 Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence 37751-37780 9 0.7
NZ_CP014985_2 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2637681-2637710 30 NZ_CP009332 Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence 10854-10883 9 0.7
NZ_CP014985_2 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638011-2638040 30 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 308409-308438 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026804 Shigella flexneri strain 89-141 plasmid unnamed1 55080-55109 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026794 Shigella flexneri strain 74-1170 plasmid unnamed 15528-15557 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026794 Shigella flexneri strain 74-1170 plasmid unnamed 244734-244763 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP033511 Shigella flexneri strain 2016AM-0877 plasmid p2016AM-0877, complete sequence 186579-186608 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026789 Shigella flexneri 2a strain ATCC 29903 plasmid unnamed1, complete sequence 87826-87855 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP034059 Shigella flexneri strain FDAARGOS_535 plasmid unnamed1, complete sequence 181875-181904 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP024476 Shigella flexneri 7b strain 94-3007 plasmid unnamed3, complete sequence 212087-212116 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_LR213456 Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 plasmid 2 87047-87076 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026771 Shigella flexneri Y strain 93-3063 plasmid unnamed3, complete sequence 60107-60136 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP044157 Shigella flexneri strain AR-0424 plasmid pAR-0424-2, complete sequence 215777-215806 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026837 Shigella boydii strain ATCC 49812 plasmid unnamed, complete sequence 139761-139790 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NC_017319 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence 73057-73086 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP012142 Shigella flexneri 4c strain 1205 plasmid 1205p2, complete sequence 73059-73088 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP044154 Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence 10672-10701 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP034933 Shigella flexneri strain 2013C-3749 plasmid p2013C-3749-2, complete sequence 51375-51404 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP037924 Shigella flexneri 5a str. M90T plasmid pWR100, complete sequence 18843-18872 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026800 Shigella flexneri strain NCTC 9728 plasmid unnamed, complete sequence 16783-16812 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NC_002698 Shigella flexneri 5a virulence plasmid pWR501, complete sequence 70426-70455 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP030773 Shigella flexneri 1c strain Y394 plasmid pINV-Y394, complete sequence 51763-51792 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP020087 Shigella flexneri 1a strain 0670 plasmid unnamed1, complete sequence 171006-171035 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP020337 Shigella flexneri 4c strain 1602 plasmid unnamed1, complete sequence 37214-37243 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NC_019197 Shigella flexneri plasmid pSF5, complete sequence 99920-99949 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP045942 Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence 91633-91662 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NC_004851 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence 74402-74431 9 0.7
NZ_CP014985_2 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638077-2638106 30 NZ_CP026830 Shigella dysenteriae strain ATCC 12039 plasmid unnamed, complete sequence 28338-28367 9 0.7
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 NZ_CP031220 Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence 125268-125297 9 0.7
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 NC_049481 Lactococcus phage CHPC361, complete genome 21399-21428 9 0.7
NZ_CP014985_2 2.22|2638869|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638869-2638898 30 NZ_CP021449 Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence 1556860-1556889 9 0.7
NZ_CP014985_2 2.32|2639529|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2639529-2639558 30 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 407276-407305 9 0.7
NZ_CP014985_2 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT 2638473-2638502 30 MF448569 Lactococcus phage 88605, complete genome 22649-22678 10 0.667

1. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP012543 (Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence) position: , mismatch: 1, identity: 0.968

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattatacccaccagagtaa	Protospacer
******************************.

2. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029549 (Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence) position: , mismatch: 1, identity: 0.968

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattatacccaccagagtaa	Protospacer
******************************.

3. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 2, identity: 0.933

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttacagaagttcttcaagagcggct	Protospacer
**** ***********************.*

4. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 2, identity: 0.933

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttacagaagttcttcaagagcggct	Protospacer
**** ***********************.*

5. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttacagaagttcttcaagagcggct	Protospacer
**** ***********************.*

6. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 2, identity: 0.933

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttacagaagttcttcaagagtggtt	Protospacer
**** ********************.****

7. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032639 (Lactobacillus paracasei strain ZFM54 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.903

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattctacccgccagagtaa	Protospacer
*************** *****.********.

8. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032639 (Lactobacillus paracasei strain ZFM54 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.903

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattctacccgccagagtaa	Protospacer
*************** *****.********.

9. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_021573 (Lactobacillus paracasei plasmid pLP5402, complete sequence) position: , mismatch: 3, identity: 0.903

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattctacccgccagagtaa	Protospacer
*************** *****.********.

10. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 3, identity: 0.9

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttgcagaagttcttcaagagcggct	Protospacer
**** **.********************.*

11. spacer 2.2|2637549|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 3, identity: 0.9

caaccttacagaagttcttcaagagcggtt	CRISPR spacer
caacgttgcagaagttcttcaagagcggct	Protospacer
**** **.********************.*

12. spacer 2.1|2637482|31|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_013543 (Lactobacillus paracasei subsp. paracasei plasmid pCD01, complete sequence) position: , mismatch: 4, identity: 0.871

tagagagcattaattatacccaccagagtag	CRISPR spacer
tagagagcattaattctacccgccagagcaa	Protospacer
*************** *****.******.*.

13. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 5, identity: 0.833

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
atgcatctgatgatgaattaactaaaaatt	Protospacer
 * *****.**************** ** *

14. spacer 2.17|2638539|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041073 (Bacillus tropicus strain LM1212-W3 plasmid p10, complete sequence) position: , mismatch: 5, identity: 0.833

gcaatttaatttataacccaagtt-tatcac	CRISPR spacer
gcaattaaatttataaccccagttccaaca-	Protospacer
****** ************ **** .* ** 

15. spacer 2.23|2638935|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031268 (Staphylococcus warneri strain 16A plasmid unnamed2) position: , mismatch: 5, identity: 0.833

tcaatataactcgcatcataatcaa--gatta	CRISPR spacer
taaatataacttgcatcgtaatcaaacgat--	Protospacer
* *********.*****.*******  ***  

16. spacer 2.25|2639067|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MK448743 (Streptococcus phage Javan371, complete genome) position: , mismatch: 5, identity: 0.833

---atctcactgatgttatcggcgatttacgag	CRISPR spacer
tagatc---ctgatgttatcggcgattttcgtg	Protospacer
   ***   ******************* ** *

17. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039224 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
atttatcaaatgatgaattaactagctaat	Protospacer
 **.*** ****************.* *.*

18. spacer 2.6|2637813|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MN176219 (Bacillus phage 000TH010, complete genome) position: , mismatch: 7, identity: 0.767

cgaatttaagacgatgaaactgccgtatgg	CRISPR spacer
ctcattaaagacgatgaaacagccgttttt	Protospacer
*  *** ************* ***** *  

19. spacer 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010135 (Escherichia coli strain D1 plasmid A, complete genome) position: , mismatch: 7, identity: 0.767

cgcctgaacattgcatcgatggtttgatca	CRISPR spacer
gtgtcgaacatttcatcgacggtttgatca	Protospacer
   ..******* ******.**********

20. spacer 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcctgaacattgcatcgatggtttgatca	CRISPR spacer
gtgtcgaacatttcatcgacggtttgatca	Protospacer
   ..******* ******.**********

21. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 7, identity: 0.767

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
gttggtggcagcgatgcatggctgatcatt	Protospacer
*************** *** *****.  ..

22. spacer 2.12|2638209|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

acgtcgccgcgaattttccgcattaccgta	CRISPR spacer
tcgttgccgcgaattttccgcatctcggct	Protospacer
 ***.******************. * *. 

23. spacer 2.12|2638209|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_019313 (Sinorhizobium meliloti plasmid pHRC017, complete sequence) position: , mismatch: 7, identity: 0.767

acgtcgccgcgaattttccgcattaccgta	CRISPR spacer
ttgtcgccgcgaatcttccgcatctccctt	Protospacer
 .************.********. ** * 

24. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagtgctgattgttaattgtatagctat	Protospacer
****** **********.******  . .*

25. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MT601272 (Bacillus phage vB_BsuS-Goe11, complete genome) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagttctgattgtttgatgtattccctt	Protospacer
**************** * *****...  *

26. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgattgtttgatgtatttcctt	Protospacer
 *************** * *****.*.  *

27. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgattgtttgatgtatttcctt	Protospacer
 *************** * *****.*.  *

28. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MT366948 (Bacillus phage Hyb3phi3Ts-SPbeta, complete genome) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgattgtttgatgtatttcctt	Protospacer
 *************** * *****.*.  *

29. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 7, identity: 0.767

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgattgtttgatgtatttcctt	Protospacer
 *************** * *****.*.  *

30. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.767

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
agtattctactgatgaattaactaacactt	Protospacer
  *  **** *****************  *

31. spacer 2.20|2638737|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.767

catcgtaccctcacaaaagctaacgccggc	CRISPR spacer
cttggtaccctcacaaaagctaccgacacg	Protospacer
* * ****************** ** *.  

32. spacer 2.20|2638737|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.767

catcgtaccctcacaaaagctaacgccggc	CRISPR spacer
cttggtaccctcacaaaagctaccgacacg	Protospacer
* * ****************** ** *.  

33. spacer 2.35|2639727|30|NZ_CP014985|CRISPRCasFinder,CRT matches to NZ_AP018520 (Sphingobium sp. YG1 plasmid pYGP1, complete sequence) position: , mismatch: 7, identity: 0.767

aggaaattcgagttcttcccgcaattgatg	CRISPR spacer
tcaaaattcgagttcgtcccgcaagaaatg	Protospacer
  .************ ********  .***

34. spacer 2.7|2637879|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028945 (Vibrio sp. dhg plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaattggggattggcaagattacgactg	CRISPR spacer
tcgaaatgaggattggcaagattacgatga	Protospacer
  .** **.******************. .

35. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagtgctgattgttaattgtatagctac	Protospacer
****** **********.******  . ..

36. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagtgctgattgttaattgtatagctac	Protospacer
****** **********.******  . ..

37. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagtgctgattgttaattgtatagctac	Protospacer
****** **********.******  . ..

38. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
ttgagtgctgattgttaattgtatagctac	Protospacer
****** **********.******  . ..

39. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019135 (Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

40. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019114 (Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

41. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019138 (Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

42. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019122 (Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

43. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019055 (Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

44. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019038 (Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

45. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019068 (Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

46. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019137 (Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

47. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019157 (Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

48. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019087 (Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

49. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019076 (Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

50. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019065 (Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

51. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019026 (Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

52. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019081 (Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

53. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019033 (Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

54. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_023584 (Synechococcus phage S-MbCM100, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

55. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019153 (Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

56. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019158 (Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

57. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019067 (Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

58. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

59. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019030 (Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

60. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019163 (Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

61. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019116 (Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

62. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019088 (Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

63. spacer 2.15|2638407|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to KJ019084 (Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome) position: , mismatch: 8, identity: 0.733

ttgagttctgattgttagttgtatcttggt	CRISPR spacer
atgagttctgaatattagttgtataaggtc	Protospacer
 ********** *.**********   * .

64. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
gcctcggcaacggttataccgtgcccaaca	Protospacer
 .. ** ***************** *** .

65. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

66. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

67. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

68. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

69. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

70. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

71. spacer 2.30|2639397|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 8, identity: 0.733

cttacgtcaacggttataccgtgcgcaagg	CRISPR spacer
tcaatcccaacggctatatcgtgcgcaagg	Protospacer
.. *. .******.****.***********

72. spacer 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053977 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ccgaaggataagccaatatttgtaccagac	CRISPR spacer
agtaaggataagtcaatatttgtagtacca	Protospacer
   *********.*********** .*   

73. spacer 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 9, identity: 0.7

ccgaaggataagccaatatttgtaccagac	CRISPR spacer
agtaaggataagtcaatatttgtagtacca	Protospacer
   *********.*********** .*   

74. spacer 2.4|2637681|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009332 (Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.7

ccgaaggataagccaatatttgtaccagac	CRISPR spacer
agtaaggataagtcaatatttgtagtacca	Protospacer
   *********.*********** .*   

75. spacer 2.9|2638011|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 9, identity: 0.7

cgcctgaacattgcatcgatggtttgatca	CRISPR spacer
atggtgaacattgcttcgatggtttctcaa	Protospacer
    ********** **********  . *

76. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

77. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

78. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026794 (Shigella flexneri strain 74-1170 plasmid unnamed) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

79. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033511 (Shigella flexneri strain 2016AM-0877 plasmid p2016AM-0877, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

80. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026789 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

81. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034059 (Shigella flexneri strain FDAARGOS_535 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

82. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024476 (Shigella flexneri 7b strain 94-3007 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

83. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213456 (Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 plasmid 2) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

84. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026771 (Shigella flexneri Y strain 93-3063 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

85. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044157 (Shigella flexneri strain AR-0424 plasmid pAR-0424-2, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

86. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026837 (Shigella boydii strain ATCC 49812 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

87. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_017319 (Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

88. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012142 (Shigella flexneri 4c strain 1205 plasmid 1205p2, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

89. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044154 (Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

90. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034933 (Shigella flexneri strain 2013C-3749 plasmid p2013C-3749-2, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

91. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037924 (Shigella flexneri 5a str. M90T plasmid pWR100, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

92. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026800 (Shigella flexneri strain NCTC 9728 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

93. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_002698 (Shigella flexneri 5a virulence plasmid pWR501, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

94. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030773 (Shigella flexneri 1c strain Y394 plasmid pINV-Y394, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

95. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020087 (Shigella flexneri 1a strain 0670 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

96. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020337 (Shigella flexneri 4c strain 1602 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

97. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_019197 (Shigella flexneri plasmid pSF5, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

98. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045942 (Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

99. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_004851 (Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

100. spacer 2.10|2638077|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026830 (Shigella dysenteriae strain ATCC 12039 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gttggtggcagcgattcattgctgacgtcc	CRISPR spacer
tcgggtagcagcgattcattactgacagat	Protospacer
 . ***.*************.*****.  .

101. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 9, identity: 0.7

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
aactatctaataatgaattaactaatgaag	Protospacer
  ..*******.*************..*. 

102. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NC_049481 (Lactococcus phage CHPC361, complete genome) position: , mismatch: 9, identity: 0.7

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
cttcatctaatgatgaatcatcttctttta	Protospacer
******************.* **  .    

103. spacer 2.22|2638869|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.7

tcttcaaggtcttgtgtggcaatagcgttt	CRISPR spacer
agctcaaggtcttgtctggcaatacggcgg	Protospacer
  .************ ********  *.  

104. spacer 2.32|2639529|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggcttacgttcaggcgattgaatccgg	CRISPR spacer
ttgggcttgcgttcaggcggttgaatttcc	Protospacer
  .*****.**********.******..  

105. spacer 2.16|2638473|30|NZ_CP014985|PILER-CR,CRISPRCasFinder,CRT matches to MF448569 (Lactococcus phage 88605, complete genome) position: , mismatch: 10, identity: 0.667

cttcatctaatgatgaattaactaacaagt	CRISPR spacer
tctcatctaatgatgaattatcttctgttg	Protospacer
..****************** **  ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 639919 : 718674 87 Lactobacillus_phage(68.97%) holin,integrase,transposase,terminase,head,tail,portal,capsid attL 643603:643618|attR 715904:715919
DBSCAN-SWA_2 815562 : 907264 97 Lactobacillus_phage(69.23%) tRNA,holin,integrase,terminase,head,protease,tail,portal,capsid attL 826442:826469|attR 889199:889226
DBSCAN-SWA_3 1242818 : 1319479 84 Lactobacillus_phage(45.45%) integrase,holin,transposase attL 1284450:1284463|attR 1321901:1321914
DBSCAN-SWA_4 1481805 : 1526838 38 unidentified_phage(55.56%) protease,transposase NA
DBSCAN-SWA_5 2373686 : 2495457 118 Streptococcus_phage(13.64%) bacteriocin,protease,transposase NA
DBSCAN-SWA_6 2801144 : 2871087 53 Burkholderia_virus(17.65%) tRNA,protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP014988
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014988_1 46881-47039 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014988_1 1.1|46920|81|NZ_CP014988|CRISPRCasFinder 46920-47000 81 NZ_CP014988 Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence 46920-47000 21 0.741

1. spacer 1.1|46920|81|NZ_CP014988|CRISPRCasFinder matches to NZ_CP014988 (Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence) position: , mismatch: 21, identity: 0.741

ttccgcaggataccgctcaatcccttgatacacacggaagtgtaaaatctacacttcctg	CRISPR spacer
ttccgcaggataccgctcaatcccttgatacacacggaagtgtaaaatctacacttcctg	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7951 : 47524 40 Lactococcus_phage(20.0%) transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage