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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 0 crisprs csa3,WYL 0 0 3 0
NZ_CP020541 Sphingobium herbicidovorans strain MH plasmid pSHV2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020538 Sphingobium herbicidovorans strain MH chromosome, complete genome 1 crisprs csa3,DEDDh,cas3,DinG 0 0 8 0
NZ_CP020542 Sphingobium herbicidovorans strain MH plasmid pSHV3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP020540 Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP020538
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020538_1 722617-722791 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 321097 : 367153 38 Bacillus_phage(16.67%) transposase,protease,tRNA,integrase attL 342260:342275|attR 368875:368890
DBSCAN-SWA_2 1316785 : 1325702 9 Bacillus_virus(14.29%) tRNA NA
DBSCAN-SWA_3 1529550 : 1575166 37 Caulobacter_phage(20.0%) transposase,protease,integrase attL 1568646:1568661|attR 1575049:1575064
DBSCAN-SWA_4 1663943 : 1723246 52 Gordonia_phage(28.57%) transposase,integrase attL 1678361:1678378|attR 1723738:1723755
DBSCAN-SWA_5 2331894 : 2375538 53 Pseudomonas_phage(30.0%) head,tRNA,protease,capsid,tail,transposase NA
DBSCAN-SWA_6 2518760 : 2558748 48 Rhizobium_phage(14.29%) head,protease,capsid,portal,tail,terminase,transposase NA
DBSCAN-SWA_7 2592815 : 2647474 39 Leptospira_phage(10.0%) transposase,integrase attL 2613376:2613392|attR 2648997:2649013
DBSCAN-SWA_8 2656332 : 2695424 43 Dinoroseobacter_phage(14.29%) tail,head,protease,tRNA,integrase,portal,capsid attL 2660623:2660637|attR 2674928:2674942
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP020539
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 57914 : 111458 41 Escherichia_phage(66.67%) transposase NA
DBSCAN-SWA_2 518080 : 545770 28 Mycobacterium_phage(33.33%) integrase,transposase attL 520274:520316|attR 523662:523704
DBSCAN-SWA_3 550726 : 567787 10 Caulobacter_phage(66.67%) integrase,transposase attL 559641:559655|attR 568903:568917
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP020540
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 179944 : 207062 19 Catovirus(16.67%) transposase,integrase,holin attL 199308:199354|attR 202700:202746
DBSCAN-SWA_2 210746 : 277876 54 Aeromonas_phage(11.11%) transposase,integrase attL 273836:273851|attR 278579:278594
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage