CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020556	Streptomyces sp. Sge12 plasmid pSGE, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP020555	Streptomyces sp. Sge12 chromosome, complete genome	11 crisprs	WYL,csa3,DEDDh,DinG,cas3,Cas14u_CAS-V,cas4	3	9	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020555_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_1

1223993-1224083

Orphan

Consensus_repeat	Method
GGCCCGGTCGGGTGCGGTCAGGCGCCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_1

>merge|NZ_CP020555|1|1223993-1224083|CRISPRCasFinder
GGCCCGGTCGGGTGCGGTCAGGCGCCGTCGGGTGCGACCGGGCCCGGTCGGGACGCGGCCGGGCCCCGTCGGGTGCGACCGGGCCCGGTCG

>NZ_CP020555|1|1|1223993-1224083|CRISPRCasFinder
GGCCCGGTCGGGTGCGGTCAGGCGCCGTCG	GGTGCGACCGGGCCCGGTCGGGACGCGGCCG
GGCCCCGTCGGGTGCGACCGGGCCCGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030388977.1\|1220833_1221061_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP020555.1\|WP_159396289.1\|1237636_1245046_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP020555.1\|WP_107475470.1\|1227379_1230604_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP020555.1\|WP_081521811.1\|1224090_1227357_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP020555.1\|WP_159396288.1\|1218907_1219423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081521806.1\|1216701_1216941_+\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|225790
NZ_CP020555.1\|WP_081521816.1\|1235904_1237530_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|176463
NZ_CP020555.1\|WP_081521813.1\|1230600_1232403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380457
NZ_CP020555.1\|WP_081521815.1\|1234964_1235939_-\|kinase	unknown	unknown	gnl\|CDD\|226917
NZ_CP020555.1\|WP_081521814.1\|1232694_1234962_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NZ_CP020555.1\|WP_081521805.1\|1206139_1216678_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP020555.1\|WP_081521809.1\|1219527_1220589_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP020555.1\|WP_030388971.1\|1232395_1232620_-\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081
NZ_CP020555.1\|WP_081521804.1\|1198217_1206143_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP020555.1\|WP_081521818.1\|1246284_1246857_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP020555.1\|WP_053168686.1\|1245374_1246208_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP020555.1\|WP_078937874.1\|1221054_1222407_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|162098
NZ_CP020555.1\|WP_081521810.1\|1222403_1223945_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|341253
NZ_CP020555.1\|WP_081521807.1\|1217026_1218379_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP020555.1\|WP_053169753.1\|1218548_1218800_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030388977.1\|1220833_1221061_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.66633e-20
NZ_CP020555.1\|WP_081521818.1\|1246284_1246857_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	2.32484e-15
NZ_CP020555.1\|WP_107475470.1\|1227379_1230604_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP020555.1\|WP_081521811.1\|1224090_1227357_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP020555.1\|WP_081521806.1\|1216701_1216941_+\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	1.06341e-19
NZ_CP020555.1\|WP_081521816.1\|1235904_1237530_-\|argininosuccinate-lyase	gnl\|CDD\|176463	cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria.	9.32637e-88
NZ_CP020555.1\|WP_081521813.1\|1230600_1232403_-\|hypothetical-protein	gnl\|CDD\|380457	cd19534, E_NRPS, Epimerization domain of nonribosomal peptide synthetases (NRPSs); belongs to the Condensation-domain family. Epimerization (E) domains of nonribosomal peptide synthetases (NRPS) flip the chirality of the end amino acid of a peptide being manufactured by the NRPS. E-domains are homologous to the Condensation (C) domains. NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. Specialized tailoring NRPS domains such as E-domains greatly increase the range of possible peptide products created by the NRPS machinery. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the E-domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.	2.43545e-98
NZ_CP020555.1\|WP_081521815.1\|1234964_1235939_-\|kinase	gnl\|CDD\|226917	COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism].	7.76721e-56
NZ_CP020555.1\|WP_081521814.1\|1232694_1234962_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	4.3418e-94
NZ_CP020555.1\|WP_081521805.1\|1206139_1216678_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP020555.1\|WP_081521810.1\|1222403_1223945_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	2.95522e-148
NZ_CP020555.1\|WP_030388971.1\|1232395_1232620_-\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	1.93872e-28
NZ_CP020555.1\|WP_081521804.1\|1198217_1206143_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP020555.1\|WP_053168686.1\|1245374_1246208_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.6845e-47
NZ_CP020555.1\|WP_078937874.1\|1221054_1222407_-\|MFS-transporter	gnl\|CDD\|162098	TIGR00900, multidrug_transporter, H+ Antiporter protein. [Transport and binding proteins, Cations and iron carrying compounds].	2.8725e-64
NZ_CP020555.1\|WP_159396289.1\|1237636_1245046_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP020555.1\|WP_081521807.1\|1217026_1218379_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.44283e-39
NZ_CP020555.1\|WP_081521809.1\|1219527_1220589_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.05449e-10

>NZ_CP020555.1|WP_081521810.1|1222403_1223945_-|amino-acid-adenylation-domain-containing-protein
MSPTETTPVPLRIAHRARIAPEATAVRAAEGELTYRQFDRRARAVAEELRAAGAGPEDTVLLGVRRGIHWAVGLLGIWYAGAAALLVDLDAPDERLRTLLEAAGTRHAVAPDTYAAAMLQRRTGRALFWASTTSAAPTAAAEPPAGIAPGSLAYVLFTSGSTGLPKPVAVGHAGLAAQVRTLAERYALTAEDAVLQFAAPAFDVCLEEALPTWCTGGTAVFVTDNVLSPAELEPFLAEQRIGVVNLPTPYWTQWAKDLERTPRALPGTLRRVVIGSDAGRTADLVNWAAAGHPPVVSCYGLTESTITATSYEPGPAELAGFAGDELIPLGEPLAGVRAYVLDEELREAPPGAPGELYLAGSCLARGYHGRPALTSERFVADPFAGVPGERMYRTGDRVTRAPGGPLVFLGRADDQVKIRGHRVELKEVEAAVAAHPDVVDVVARAVAAADGPQLAAWAAVTPGSDLTPDALRRHLLAKVPGYLVPAAVTLMERLPRTPGGKLDPRALPAPAPR
>NZ_CP020555.1|WP_078937874.1|1221054_1222407_-|MFS-transporter
MNQRPADPVRTQTRNAPVSVTTDEPTDSEQSVQRRRRRDFRLFMSSHICNELGGSITYVALPLMAVLTLDASAMQAGLLAAAEHAAFLVLGLPAGAWVDRMRRRRVMMAADLARTVLLTALPVAYLLDLHSMPLLYAVALLLGCARLFGDVADQSYLPTLIGKDTLIAGNSKLETVRSGAEFAGPGIAGFLVQLLGAAGTLAGQAVTSLVSVVLLGRIGAREEKPEPAPRRHLLRDIREGLGYVLGHRILRLIALNTAAVNLFLSAVMAIEVLFLTRTVGLPPAAVGWVLTTATIGSVLAATVADRVTRAVGAARLTWLSLLVTMPFGLLLPLADKDWRIGLFVLGSFVQSAGVTLYNICQVTYRQTVCPPHLLGRMTATMRFLVWGVLPLSGLLAGLLGELLGVRNALWLCAAALSVAPLVLLCSPLRRMREFEDAAPGAGATAGRPAQ
>NZ_CP020555.1|WP_030388977.1|1220833_1221061_+|helix-turn-helix-transcriptional-regulator
MLDSTLTAPAPELPALTPREQEVLAYLAQGHTYRMIACRMGLSPHTVDTYLRRLRSKTGAVNRTQLTHIAFRLGY
>NZ_CP020555.1|WP_081521809.1|1219527_1220589_-|LuxR-family-transcriptional-regulator
MQTSDVVPDPKNADVDIDVYGWVLEHRTVDVDAVAAGTGRDPDEVRGSVARLRASRLLHVSPVDPSVAFAVAPDTAAEQLVAPLEAQIRDQQREISGIREDLGRFLPHYLGRRSTGESLEVLESLEDVRGALNRASLNCTTEMLSSQPGGGSRVPEAMQEALRRDETMLQRGISIRTLYHHTARFNGPSQAYVAATSVLGAQYRTAHELFGRLIAFDRELAFIPVADGSWGAVVIREPSTVAYLCNIFDQTWDLASPFSAAAGQGLEEVAREIHETIIRLLAAGLKDEAIARRLGMSLRTARRHIADIMQELGAGSRFQAGVAAAARGLLDRGAEAEQAAEAVAGADGTVAPS
>NZ_CP020555.1|WP_159396288.1|1218907_1219423_-|hypothetical-protein
MTDAGCERGTPHLREIVLFLSVHLDRAPGVLWPEYDNPAFGDADDADDAGALPAEGGVRPAQADRFTAELGALTGLSVRLDRVETPGSTQGGGADAVWTAQPEGREHLLVHQIAGAVTWQLTGTGESGRPESFQCRLLPGELLYVPAGWSRRYIDAQGAQYAVVCLGPRGG
>NZ_CP020555.1|WP_053169753.1|1218548_1218800_+|hypothetical-protein
MLKRYVIALSVTASALLLPAAGVAQAADDTSATTTATTTTGGENTTTAPTTRQIVTADGRVVTIGTGTLGHRNRDTADSSWGG
>NZ_CP020555.1|WP_081521807.1|1217026_1218379_+|MFS-transporter
MTGSYPGGSASSRRLTPLAALVAASGISSLGMAATLVAVPWFVLHSTGSGTRTGLVATAEVLGLLCSAVLAGPVVDRLPVRATSVGADLLTAAAISLIPLLHAWDALNLPVLTALVFLVGAARGPSDTSKQLLLPAAMQRAGVTAERATGCVEGARRIGMMAGAPLAGLLIATAGPVRTLYADMAAMALCALLVAALVAVVPRSRPADGAPGGSYAGELRFGLAQLRRDRLLGAMVGVLMLTNALDGALNGVLYPAYGTQVLRSSALFGAMITAMGAGALLGAALYGWAGHRLPRRAVFVGAFVLVGAVRCAVLAAEPRVPVLLAVLAVSGIGSGVVGPLMMSVAYERVPEEVRGRVFGLLVAAALAATPLGMLGAGLVLDASGLVAALLGTGALYLAVTLAPLVFPVWRGLDARSGAGTSGIAEASKEPAGRAHDAPAASGAKILTEQA
>NZ_CP020555.1|WP_081521806.1|1216701_1216941_+|MbtH-family-NRPS-accessory-protein
MALPHHRSVLENTVNDASPQQYLVVANDEEQCSLWEAGRPVPLGWHDQGVRGTKEACLEHIERVWTDMRPLSLRMNMAG
>NZ_CP020555.1|WP_081521805.1|1206139_1216678_+|non-ribosomal-peptide-synthetase
MTTQESLPAGVDGRLAAARELLRRRVRAALDDSAAGTATPSAPTAATDATADDGGPDLAPVASFAQERMWLVDRMMDGTPGYAIPEVVRLRGPVRPDLLRRSLTAVVARHAPLRTVFEERDGAPHPVVLPAPEAFPLPVLDLGDAPLSELEERAHALAREEVRGAFDLAAGPLLRALLIRLGAEDHLLVLVVHHIATDGWSMGLLWQELSEGYAALLADRPPVRAALPLDYQAYARTQRDRFASGAMNGQLRWWEKSLAGLEPLELPTDRPRPTRRSGDGASLDFTLDARLTARLRGIAESGGATLFMTLLAGFQAALARFSGRTDIAVGTPVAGRDRVELEPLVGFFVNTVVLRADLSGEVGFRELLGRVRRATVDAYDHQEVPFDRLVEHLSPERVGDRNPLVQVMFASAPDETAGLRLPGLEAQAVRTDFGGSLFDLSVFVSEGAETCSGSLVFDTDLFDRATAELVLGHYLELLASAAEEPDRPLAELLPSAPTAARLTAEGHGAARSDLAPASLVELFAEQARRTPAAEAVVCGADRLTFAELDRRSDLLAARLADAGVVRESPVALLMERSVHLPVAILAVLKAGGLYVPLGEGFPVARLHWMLERTGARLLLADAATAGHEAVSTSPVPVLDATGPVAGAPAAAPGPYPPCSPDQLAYVMYTSGSTGEPKGIGVTHANVAALARDTSFGAAHRRVLAHSPLSFDASTYELWVPLLSGGQVVMAPPGRVDTAALTRLVQEHRITSLFLTAALFNLVVEECVELLTHVREVWTGGEAASPHSFARALEQAPETVLVNVYGPTETTTFATRHRLDPRAGAVVDGRIPIGTALDDTRLYVLDERGRPVPQGAVGELCIGGTGVARGYLGRPGLTARQFTPDPYGAPGARMYRTGDLARRRPDGAVDYLGRSDQQVKIRGHRIEPGEIEAELTRCPQVGHAAVVVREDAPGEQRLVAYVVPTEGRAAEPAELHRVLAVRLPAYMLPSAIVPLDALPFTPNGKLDRRALPAPPEEGVRRAEFAAPATPMEELAASVWGEVLGTERIGRHDDFFALGGHSLRATRAVSRLGARLGTGVPLRLLFEHPTLERFAAALDALRTDAAGTASTATAVTAIGARPAGEPAPLSFAQQRLWFLDQLQPGRPDYNIPVAARLRGPLDADALAAALSTVVTRHEVLRSRITEGPLGPVQTVEAPEVFAPVRTDLGDLPPEEARSRALGLAHADAATPFDLGSAPLLRARVVRVADDEHLLVLVLHHTVGDGWSMPVLWRELSGAYAALRRGEQAVLPELSVQYGDFAHWQQSRLANGGADAGIAHWREALAGLPALELPTDRPRPQVRSGAGDSFVFEVPAELAERLGALARERGATLFMVLLAGFQALLARYTGQADIAVGSPIAGRDRTELEPLIGFFVNTLVLRTDLSGDPAFGELLGRVRRTALAAYEHQDVPFDRLVEELRPERDLSRNPLFDVLFQLHPEQLAALPLDGVEVEDLDTSNGTAKFDLSLAMTEHAGGLTGTVQYATDLFDRATVERFGAHYLRLLAGAAEEPDAPLSRLDVLSPQEHAALLGEEPGPRADRPADRTLHSLVAEAARLRPDAPAVTCAGRTTSYAELDAAANRLAHRLRQLGTGPETTVAVLAGRDLRMLVCVLAVLKAGGAYLPLDAGHPAERLRTVLADSGARLVLTAGLPGGLPADLAGAVPVLDLDLDAEQHRVDALPATEPPATASPAHLAYLLYTSGSTGRPKGVAVTHAAITGYLAALTSTFGLGPDDAVLARTALTFDPSVRDLFAPLTTGGRIVLASQDESGDPDALARLLHAEDVTALLSIVPSMLEPLVGAVAAGQGPSPALRLVMTTGEALTPGLARAAHALGTPGRLRLVNQYGPTECTNTTTYHEVTDADIEAGRIPIGRPLPGARVLVLGEHLEPLPRGAIGELFIAGRGVARGYLGDPARTAEAYPPDPYGPPGARMYRTGDLARLRSDGVLEFHGRRDNQVKVRGHRIELGEVEAALLRHPDVARAVAAAHGEGADRMLAAYVVWRDGGGDPAAVLDFVRAALPAAMVPSALVVLDALPLTPNGKTDRRALPAPEAGTAGGHRAHVAPRTALERTVVEVWEEVLGEGPIGVRDHFFERGGHSLRATRVISRLRALLELDIPMQLLFRHPVAEDLARALASLGAADASEPVIPALPVGPGPLSFGQQRLWLLDRLQPGRPDYNMPGAVRLTGELDRAAALGALADVVARHEVLRSRIEESGESGGEGLFAARVVPGPASMFTPLFTDLSELGAAAGERARELAAQDAALPFDLAAAGPLRARLVRIAPQEHLLVIVAHHIAFDGWSVGVFWREFFAAYRARTLEGAEPLPELAVSYRDFASWQRERLSGDALAGTLDYWRGRLDGLAPLDLPTDRPRPATPSGRGEQFSFELPEPLLRDLRDLGRRHDATLFMVLLAGFQALLARWSGGEDVAVGSPIAGRDRTELEPLIGFFVNSLVLRTDLSGDPGFGELLDRARETALGAYAHQEVPFERLVEEVRPERDLSRNPLFQVMLVLDEEASKPPALPGLDVEPLSLASGASKFDLSLYFVEEEGALRGEAVFATDLFDRASVERMTSALAELLAAAVADPATPLGALPLMGAAEEARLLDAGRGVAEPGAGRALPVLVGEQVSRTPGAVAVDDGERALTYAGLWEASGRLARELARLGVGPETAVAVCAERSVLLPAALLGVLRSGGMYVPVDPGYPADRIGYMLADSGARVLVVSGLPGAPGAPDGVAVVDLDALAGAAAPAGGDLGPVRPEQAPEPEQLAYALYTSGSTGRPKGVTVPHRALANFTRDMVRRLELTAGDTVAAVTTASFDIAVLELLVPLVCGATVRVVDRDTARDGTLLAKELDAAPVTVVQATPATWHQLMESGWQAPRVRALCGGEALPPALAERMRTALGTVRNVYGPTETTVWSTAHRLSGPVGDGPVPIGSALANTRLHVLDANLRPVPVGVFGELYIGGDGVARGYHGRPALTADRFVPDPYAAGERLYRTGDLVRRLADGGLEYRGRADGQVKVRGHRMELGEIESALARHPRVAAAAVAVHGTGVDAVLAGYVTWREGTGELQELGDFLRQDLPEYMVPAVLTALDRLPLTPNGKLDRKALPAPSADAVRGGGAGRIAPRDTTELRMARLWEQTLGMSPIGVRDDFFALGGHSLKAFALMAAVRREFGVELPLNMVFRRRTVELLCEALPQAGAAAARLLVPLADGDPSRPPLVLVHPRGGDVVCYRDLVRDLSARPGGARRVLGLESVGYNTGETPLERVPEMAERYLAALREEQPQGPYLLAGWSFGGMVAYEMAARLEAAGEEVAFLGLIDAAAPGAAAGSRSAAAGPGDPDLLRYGIAAGLDAGSARELDEEELLDVLVRRGREEGTLPRTSPTEALRRLLRVAEANGAASAAYRTDAVLGVDLHLFTVDERHPELATPLVDPAAWRPRTAGAVVRAAVPGNHHDLVDPPHCAALAQLLAAALPR
>NZ_CP020555.1|WP_081521804.1|1198217_1206143_+|non-ribosomal-peptide-synthetase
MATHDRGPLPLTPPQNGVWFAQQLDPTRLDYTIGEYLEIRGAVDPELLAEAVRTVVAGTETLCVRFAEVDGVVQQIPAGPPPLRMDTVDVSAHPHPDGESERLMRAELARPTDLATGDVCRQLLVRTGPRAYRWMQAYHHLVADGVTGSILARWTAEVYSALVAGEPVPALESTPWERIVAGEEEYARSERCAADREFWRARLEGAPEPVSFTGSAPAPASGTAVRVSGELDPADARTLREAARRHGTRWSALVMAAAAAHLHRAGSTEDVVLGLPVTGRTTQDARRTPGMFSKVLPLRLTVTGDTTVGALVRNTSAGIKEALRHQRYRIEEYTGSGPRLWDAAVNLMSFDYELSFAGAPASAHNLAVGPVEHVSLNVYDRGGDSPLTVQAEGDAADIGADELEALRVRFTRFLVALAAAEDETPVGSLPFLTAEDTERLAGFAEGGGDRAPRGGLLHTLFEEAAARAPESVAVVCAGEEVTYRELDAWAQDIADRLRPAVDPGTAVGVCVERSPAMVAALLGVLKAGGCYVPLDPGLPPERIAYIVRDAGLRTVVAGAGAHDRLPHDLPSVVFAGAVGDPVRGGRGGAEVPSASAAYLLYTSGSTGEPKGVVVPHAAAVDFVRGHLALCGAGGPAGSAAGAGAGAGAGAGRTERFLGFASLSFDVSVLDVFGSLLSGSTLVLATDAERVDVDRLQALLAEHAVTVADLPPALLPLLDPAALPELRFLSTGGEAPSGDAVDRWAVDGREVWNAYGPTEAAVSVTMHRVVPPSHGRIPPIGRPMAHHRAYVVDRDLRLLPPGATGELCVAGAGLAQGYAGRAAMTADRFVPDPFSGVPGARMYRTGDLVRWSVRGELEFLGRVDRQVKINGHRIELGEIEAVLGRQPSVGQAAVIVHAPVGAARRLVAFVAPPQDGGPAPEPEELTAELGRVLPGYMVPRTIVAVDRLPLTPGGKVDRARLRVPQAAARPERPERPYGAVESTLAALFSEALGVTAAPDDNFFELGGDSITALTLTSRARAHGFSFTLRDVFAHKTAAALAAAVGEPAAAASPAAAPAPDACGPLPATPVMRWLLDGPGPIGRFSQSMVLALPGGADDATLVRVLQSVVDRHAALRLGVAAGPGGPLCTIGEPGVVDVSRLYRTVSVAGLDESARAETMAEAARKAAGQLDPAASVMLRAVRFDAGGAAPDRLLLCVHHLAVDGVSWRILTADLAAAWEAAVAGRPLPAADGEVSFRAWARHLELLAQAPEVLDELPFWRSTLETPGAEADPQAPWNRVPDPVRDTAGTTRTLTLDLPREVAGPLLAGVPGALRTGPTEVLLAGLVLAAHRLRSPRTAAGPLLVDLEGHGRVDRTGRHDLARTVGWFTTQYPVRLDLDGLDLDAAARGGEALAELVARIHTVVASVPDHGTGFGLLSRLNPGTAAELSDLPRPRVLFNYLGRFSGGDETPWSPAPGAGGLRADVDPAMPVEHALQIDAMAVDGADGPAFTAVVTHPRALLTDAEADALVAAWGEALRLLAGWTGAARPRRLTPRDLPLVRLTQPETDALSARHAGLVDVLPLSPLQEGLFFHSAFDTGAMDAYTGQLVLTLEGPVDERALRAAGDRLLRRHSALRSAFTDQGLDRPVQVVLESAEAPWETVDLGGPGSADRQREWERLLAADRARRFDLERPPLVRFTLVRFGADEHRLVMTNHHILWDGWSSAVLLRELLAGYAEYAEHAERAEYAACAGSPDPGGTGPLAEGVPYRSHLDWLARQDHRAAEAAWSGALAGLEEPTLLGAADPHRIDALPERAAVELSAELTARLTARARSAGVTLNSVVQGLWAVLLGRVTGRDDVVFGGTVSGRTADVTGIEEMVGLLINTLPVRFRIREDEPLLAALARFQDEQADLMDHQHVGLAGIQRAAGLGTLFDTTVVVENYPLDLESMRDLAGGPRLTGVEGSDATHYTVNLIVLPGERLRLHLDHRTDVLDARTARSLGEALERLLTAVADAPSTPVGEVDLLSDEQHRLIREWNGTAVPVPRTTLVELFAQQVARTPDAPATVFRGERLTYAELDARAERLARELCARGAGPERIVAVALHRSTEMVVSLLAVLKSGAAYLPVDPSLPADRIAYLLSDAEPVLLLADDAVADALPAAADLPRLDPGAVHGGGGGALLRAPLPAHPAYVIYTSGSTGRPKAVVVEHSAIVNRLLWMQDRYRLGADDRVLQKTPFGFDVSVWEFFWPLLTGAALVVAEPGGHRDPAYLTRVIQEEAVTTVHFVPSMLAAFVEDPQAGRCRSLRRVVCSGEALPEELKNRFLDVLDVPLHNLYGPTEAAVDVTHWDCLREETGPVPIGRPIWNTSLYVLDPRGRPVPVGVAGELFLAGAGLARGYLRRPALTAERFPLDPFGPPGSRMYRTGDLARHRADGSVEYLGRTDDQVKIHGFRIELGEIETALGRLPGVGRAAVVVREDVPGERRLVGYFVPEAGTALDAEAMRAELARSLPEYMVPLLVVVDGLPVTANGKLDRRALPAPAAAAAATGYEPPAGETEELVAMVWASVLDAPRIGRHDDFFALGGHSLSATRVAARLRQSLGLDLPLHTLFEQRTVAALATAVETVLLAELEAEAAPFDAHAETAGGTATAPAIDGVPSLVLQGETS
>NZ_CP020555.1|WP_081521811.1|1224090_1227357_-|non-ribosomal-peptide-synthetase
MNHPPSTPAPTPALTAAPTPAPAARSLVEDVLPLSPLQDGILFHALFDEDERDVYVAQLILDLDGPLDPDRLRAAADTVLERHANLRAGFLRRATGEPAQVVRRGVRTPWQEVDLTGLDAIERAAAVDTLLAEDRATRFDLARPPLLRFTLIRTGALSHRLLLTYHHILMDGWSWPVLVRELLALHHADDAPLGPVTPYSAFLSRLHGRDTLAAQDAWTRALDGLAGGTRTAPVSPPPGTVLPDRVETYLPASLTERLGALARAHRITSGTLLQGAWALLLGRQIRSEDVVFGAIVSGRDPELPGVADIVGLCINTVPVRVRIDPAESLVALFERLQDEQARLIDHHHLGLVEIQRLAGAGELFDSCVAFQNYPVDAAGLAALGAGGLEVTGVDPHDAAHYPLSLTAIPGDRLRLQIDYRPDVFERDTAQALLERLARLLQAVADDPSCPVGTVDLLSPAERHRVLVEWNDTACDEQYAEVVERVRQQAERRPEAVATTDDTGRELSYAALVARADALSLALLADGVRPGDLVAVLSEPTARVPVAMLGILGSGAAYVPLDPEGPVTRTADLLASGGIARLLAAPEQRARAEEIAAAVPGGLPVLVIDDAAAAPGERPAPAGGPDALAYVCFTSGSTGKPKGAMVHRRGMNNHLLAKVEDLTLDEGDRVVMNAPLTFDISVWQMLAPLITGGQVHLVSRDTARDPAALFGDAAHRGITVLETVPSFVRAAVDLWDTGVRPPALPDLRWFIVNGEVLPPELCTRWYARHPQAAIVNAYGLTECSDDNTHAFIRPDVHAQLEHGRLPVGRPLRNNTLYLLDAALAPVPPGVPGELFIGGTGVGPGYLRDPRRSSERYVPDPFSAEPGSRMYRTGDLARMRADGQLDFLGRQDHQVKVRGNRIELGEVETALRAVPGVGEAVVAVDRDHAGQQRLVCYFTGTPTAEEVRTELGRNLPNYMVPSLFLHLPHFPLTVNGKLDRKALPDPATVHRPVGRLPSTPEEKAVCEIFASVLGLQEAGMDDDFFSHGGHSLLATRLTGRIGTELGVHLGIRDLFETPTPAGISARLAEAATAPAAPARPALRPRSRDGA
>NZ_CP020555.1|WP_107475470.1|1227379_1230604_-|non-ribosomal-peptide-synthetase
MIPLSHAQQRLWFHARDGADGALYHIPVGLRLNGVLDRAALRAALADVSARHEALRTVFPDEAGRPYQRVLEPADAAPALAVTDCPPAERAGRAAQASSRPFDLRTEPPLRADLFTDGDEDHYLLLVLHHIAGDGHSVNILVRDLAAAYTARTAGRPPEWPELPVQYPDYALWQRELLGPAQDSDSLHARLLTHWAEVLDGLPDELALPADRPRPAVAAHRGAVVEARTDAAAHAGLAALARDGRATPFMAVQAAFAVLLTRLGAGTDLPLGCPVDGRDDEALTDLVGLFVNTLIVRADTSGDPAFTEVLDRVRAAALATYAHQELPFESLVERLNPARSAARHPLFQVAVAAQRTEPQIPAFAGLTAQVEAVRTDTAKFDLTLEVEELHDPATGEPRGLALGLEYASDLFDEGTARRLLDRLVHLIGAVVREPGIPLSALDVLLPGERADLLEHWQGAPVATDARTVHEAFAERAAAHPDRPAVLCAGRGTTYAELDAAAQLFAGRLRTLGVRPGEAVAVLMDRSADLVAACLGILKAGAAYLPLDARAPGARTEAVIAASGAAVLVTDLPEGEPVPAGPRHVLRPAEPTAERAAEGAGEAAATAGPAGQPDALAYLMYTSGSTGAPKGVAVSHREVVALATDRRWRGGAHERVLFRSPHAFDASTYELWVPLLNGGLVVVAPPGDLDVDALARLMTEEKVTGTFLTATLFNVLADRCLPALGSLHEVMTGGEAASPSMVRRVREACPRTTVTNAYGPTEATTFAATFAVGPGQEAPDGQVPIGRPLDGTQLHVLDERLGLAAPGVIGELYIAGAGLAQGYLGRAALTAERFVACPYGPPGARMYRTGDLARWNADGQVEYLGRADRQVKIRGLRIEPGEIEHALAGHPAVGQAAVTVVDTAAGPALAGYAVPAEGAPAPTPAELREHLRARLPDYMVPTTLTLLDAFPVTANGKTDLAALPVPDPAASGAPGAHQEPRTDEERALCAIWEQVLGLPRIGVHDSFFDLGGHSLLATQLLAEVRARFGAAVGIRQFFTGPTVAELAAALPAAAAAGAAAQDPPIVRRARRTQTA
>NZ_CP020555.1|WP_081521813.1|1230600_1232403_-|hypothetical-protein
MAEPAHRTEQPAGADPVRTLRTLFAEVLGRGEVDADHSFTGLGGDSIQAIQVVSRARTAGLVLTTRDVLRAESVNALAATARAHGRVRAGAGPAVPPRRLGPLTPTPIMGWLAELGGPVDTYNQSLVVRTPPGFGAADAERTVQALLDTHEMLRLRLPDGIAAAGAEPVVPPAGSVTAADLLDQVDARGRDDAELPALTRERMRAARRLLSPRDGRMLRAVLMDRGAGQQGRLALVIHHLVVDGVSWRILHDDLRTCAAALAEGREPVLEPAHTPFAHWADLLRAEATSGRRTAEADRWAAALREAPQALAGVRAPGGLDPESPEHTLTLTLGPDVAGPLLTTAPGLVNGTVNDVLLTALALAVLGRRNADGQVPQVPEDMEGAVLVDVEGHGREDIADGTDLSRTVGWFTTVFPVRLALGRPDLEEARAGGPAIGAALRLVKEELRAVPDKGIGFGLLRHLNSRTRGDLAARGIPQIGFNYLGRFPMGGDAPWDAAPGHDFALDDAEEGLPMAHAVEVNAAAHEGPDGLTLSATWTWAGNALPGPWVHDLAQEWFTMLRSVVTHAARPDAGGLTPSDVSLTRVSQADLDTFESQLGALL
>NZ_CP020555.1|WP_030388971.1|1232395_1232620_-|MbtH-family-protein
MSNPFENDNAAYVVVRNDELQHSLWPAANPVPAGWHVVHGPDGRQACLDHVERVWTDMRPASLVAALAGNTARG
>NZ_CP020555.1|WP_081521814.1|1232694_1234962_-|pyridoxal-phosphate-dependent-enzyme
MLFDTVTDAIGATPLVRLRLGEARGVEVYAKLELQNLFAMKDRVARNILLEARRLGTLKPGDPVIESSSGTMALGVALVGRSLGHEVHIVTDPRIDPVTLAKLRALGCRVHIVEAMTSHGWQSARLERLAELRGELPGAFWPQQYTNPDNPGAYRTLAGELLEDLGRFDTLVGAVGSGGSLCGTARALRAALPALHVVGVDCVGSALFGQPDVPQRLQSGLGNSLLPKNLDRTLVDEVHWLNDHEAFAATWDLAREQQIFGGNTSGSVYRVLTGLAERAEPGTRIVGILPDRGDRYADTVYNDEHWDANRLREVPTATAPAALGTDGTARTWSALAYSPPAGIRRHLLFVESNTTGTGMLALERARELGTVPVLLTGDPDRYRGLADTGAEVVRCDTNSDAALREAVQERFRREEIAGVTTTSDFYVPAAARIAQWLGLPGNPPEAVAVCRDKSALRERLRAAGVRQPRYALVREPDGAAAAVARTGLPCVVKPADDSGSTNVLLCADEAEVRAQIERILAIDTNVRGMPTARTVLVEEYLEAPEYSVEMFSQDGQAQCVGITAKSVTATPYFVEHRHLFPAPLPATTAQRITETVTAALDAAGIRLGATHTEVKLTAGGPALIEINPRPAGGMIPELIRLATGVDLLGEQLRAALGLPPHLKAEDAGHAGIQFLLADTDGTLTAAHGTRAAETVDGVESVLVTAAPGTPVHSPRSASDRLGHVIARHAEPEGVHAALDAARALIRLDIEAAPRS
>NZ_CP020555.1|WP_081521815.1|1234964_1235939_-|kinase
MAPAPAYGTRTDTAGGTATAPAGSGSAFGTFGELLQGALPHPQGDFLVTFPLARWATAVFHPVPGRHGVQVRPAHKAKSRRVAEAVLAALGSTDGGLLEVAGDLPEGKGLASSSADLVATVRAVGAAHGRAFTPAETEDFLRGIEPADGVMYDEIVAFHHREVRLGRRLGVLPPLTVVAHDEGGQVDTVAHNRVARAIGAADRAEYALLLDRLTAAVARGDLQEVGAVATRSAEMNAHRRRRAGFAQLHALCREVDGLGLVLAHSGTMLGVLLEAGDPALAGKTEHIRAGCAALGGEVSVHRSLGGGDSWSPTGVPAHPTELEI
>NZ_CP020555.1|WP_081521816.1|1235904_1237530_-|argininosuccinate-lyase
MRRRARALRPAPEQERKHHVTSDTPGPAPELSGRIRGGPAELLHDEVLAPQFAFESRHLLRHYVAIEKTLAAEYVRMDLITAEEAHRIAALLDSVGPDTLSAQPGANMSDIAFALERHVEAGLPHPVTAWHADRSRNDLQACAQVMYGRDQLTRFAAALLELGSVVHRLAEKTCDLPMPGYTHFQAAQIITPGFHLAALSEHLLHTHARLLNAYDGIDASPLGAGAMAGQELPWDRDRMARLLGFSRPQPHALTAVASRRWSAELTAELSLLGTALSRFTTDLLTWGGSEYGFIELPDELSGISSAMPQKKNYPVLERIRGRTAHLTAFHLDVLLGQRNTPFCNLVEVSKEAGTHLLNAFDSAHGTVRLLTEVLRRLTFRADRMRQVCEREFLGGFSLANALCLTEGVPWRTAQVVAGKYVVLAATAGAAPAPGEPALLAEAAAGHGITLTDPARLLAEAFDVDRGLERMVSAGSARPEAVRAVLRTQQETYERLTADWDRRAAAIRAGAEEGDRALYGATGTETEQEEGDGTRTRVRHAH
>NZ_CP020555.1|WP_159396289.1|1237636_1245046_-|amino-acid-adenylation-domain-containing-protein
MASHVPIERPAEPSFSAFRASAAQQRMYFLQQMEEGRPTYHMPVFYGLEGPVDETALRSCAQELIDRHEALRTRFVLRDGELWQHIDTRAALAWSSATAAGDRDVEEWTAAEHHRPFDLEAGPLFRAALLHTPDGAVLALAMHHIVADGWSVGILARELLSAYARCAGGPRPEPAEEGPEYQYADFSEWQEEWLRGEAAGRQLAHWERQLSGELPDAPLPRDGRPGAGAARGAAALHSFDVPAPVLARMERLCRDTHSTPYTLMLAAFQIVLGRYTGTDDVLVGTPVAGRNRKEFQDTVGLFVNTLVIRADLSENPAFRVHLERVRDTVLDAQDHQDLPFERVVDRIAPGRTGEDAPLFHVMFGLHDEDGMTDGLPGPRARMLEGPAGTAKFDLTFDVVRTGGAMSCRLEYRADLFAAATIEQFGRHFARLLDAATDHPELPLDALAMLSDDERGGIGSPLPGDAPHPPHGVLPHAPGGPRCVHEIFAAHAARTPDSVALVHEGTSLTYRELDTRANRLAHRLRALGVGPDTLVGLCLPRSADLVVALLGILKAGGAYLPLDPDNPPERLRHIIGDARLAHVVGTTSTRHLWDAPATAPAATDPHATDPHAEDPHAPAAALHTVDLLADAPLLAAQPDTAPETGVTPDHLAYVIYTSGSTGLPKGTLVPHSNVTRLFSATDHWFGFGPDDVWTLFHSIAFDFSVWELWGALAHGGRLVVVPYGTSRSPEEFHRLLRAERVTVLNQTPSAFYQLARADEEHHRTAGAAGAAGSGLSLRHVVFGGEALDVAALAGWFARHGDTAPRLVNMYGITETTVHVTYRPLTARDAEEGRGSVIGVPIPDLRLHLLDARGRTVPRGAVGELYVAGAGLARGYLRRPELTAERFPTPLADGSAVADAPTGLSAGERLYRTGDLARALPDGDLEYLGRIDHQVKLRGFRIELGEVEAALAAHPLVDAAVALVAPDPAGTDVLVGYLAVTGAEDGAGPTVEELRAHLARRLPGYMIPGAFVTLPAFPLTANGKTDRRRLPAPGSAARTPTAGYEAPDGPVETALTEVFAQVLGHERVGALDNWFALGGDSIRSLQVLARIRERGLDLTVADLMRRQSARALAPAVTRLEAAPGGAAPYEPFALLTPEDRAALPEGLEDAYPMTRLQAGMLYHSDLPSAGGRVYHNVASYLVEAPFSEAAWRTTVEVLAARHEMLRTSFDPHGFSEPLQLVHRGARPEITFEDLHGLDPEAQDTAVAARYAAERDRPFAWERPPLIRFHVQRLSGTRLRLFVAEHHAVLDGWSERSLLTELASCYTEALAARTPGDGPSPDAGPRSRFASFVALERAALADPGQRAFWTGKAADAPATRLPRPAATGGPARMSWYLAPLPQGLHARLTSLAAECGVPLRTVLLAAHLRVMALLGGGDAVTTGVVHNGRAEETDGDKVVGAFLNTLPLSADVTGTPWRGLVAHVAELEAELHAYRRFPLAEIQRLSGGGPLFETFFNYTHFHVEQDGPADGTFTVLEETGEAGTDFAFGAEFSRSPDGTLLELGLRFDAAQFSEEQMESAHASYRAALRDLSEAPDRDCTAADLLPEAEHRRYAEWNRTAVHYPRPHVLTRLIDEQCERTPDAPAVRFEGAELTYRALDTEAERLCAVLRERGAGPGAFVGLLMERSLALPVVLLAVLKSGAAYVPLDPEHPAPRVRSLLAESGIGLVVTDGAWADRLADSGVTVVRPQDAPTGAPTDSAIGTGPGPADPAYMIFTSGSTGKPKGVVVSHRAIANRLLWMQDEYGLTPGERVLHKTPYTFDVSVWELFWPLLTGATLVLARPGGQRDPGYLAGLIHDEGVTTVHFVPSMLSVFLDDPAAVTGAAGLTRVVCSGEALPYEVQRRFFERLPGVELHNLYGPTEAAVDVTYWQCRPDGGDTVPIGRPIANMRTHVLDRRLAEVPLGVTGELFLEGIGLADGYHGRPELTAERFIEHTGPDGATRRLYRTGDLARHRPDGALEYAGRTDHQLKIRGFRVEPGEIEAVLAEHPGVRDCAVLPRGERLVAYVVPGATGPDGAPAPAPEPGELARHARERLPEYMVPSAWVCLDTLPLTANGKLDRAALPDPDPADLRGGVEQTPPRDALESRLAGIWERLLAAGPVGVHDDFFESGGHSIDALRLIGRINQAFGERLGVSAVMEHPTVARQADLLRGRHAEAAPDPVVRIRTGGTLDPLFLVHPIGGNVFCYRTLAAELDADRPVFGLTAPGLTAPDPVSGAGVEELAAAHVEALRRIRPEGPYHLAGWSFGGLLAYAMAVRLRAAGQEVATLALLDTGYPEPAHVPADESDLLEWFHEDLARSAGFDPSDEGVAALRSALRSVADTTARLAVLAEQVEREGFAPGLDPRDLARHYAVFRTGIRAAAAYEPPAAPCPVLFLQTATGAREHAADRWAGRAEAGFTRHDLATDHYGLMRPPHSTRAAALLRTALAAADHR
>NZ_CP020555.1|WP_053168686.1|1245374_1246208_+|alpha/beta-hydrolase
MPFITVGRENTTDIDLYYEDHGTGQPVVLIHGYPLDGHSWEKQVPVLLDAGHRVITYDRRGFGQSSQPTTGYDYDTFAADLHTLMETLDLTDAVLVGFSMGTGEVGRYLGTHGSARVAKAAFLAGLEPYLLKTDDNPTGVDGSVFEGILAAVTKDRYAYFTDFYQGFYNLDENLGTRISEEAVRASWATAAGASAYASRAAVLTWTTDFRGDIPRIDVPTLILHGTEDRILPIGATAEPFHKALPHADYVVLEGAPHGLLWTHADEVNSALLAFLRK
>NZ_CP020555.1|WP_081521818.1|1246284_1246857_+|TetR/AcrR-family-transcriptional-regulator
MSRRAMVRPGGRSARVQQAVHTAVRELQAEVGRPELTIPLVAARAGVTPSTIYRRWGDLQELLSDVAVEHLRPEAPPEDHGDLAADLRGWAEQFLEEMASPTGRAYIRDALLGDPDGDNAGQCSAYAADQIAIVLARAEERGEEAPDVETVLDRVVAPMMYRILFRPGGLTDAYAHALVREAVRGFGTPR

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Crispr_ID: NZ_CP020555_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_2

1822306-1822379

Orphan

Consensus_repeat	Method
GCGGGGCCCGGGGCAGAGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_2

>merge|NZ_CP020555|2|1822306-1822379|CRISPRCasFinder
GCGGGGCCCGGGGCAGAGCCCCGCACTTCCAGCCTCGCCGGCGTTTGAGGCGCGGGGCCCGGGGCAGAGCCCCG

>NZ_CP020555|2|2|1822306-1822379|CRISPRCasFinder
GCGGGGCCCGGGGCAGAGCCCCG	CACTTCCAGCCTCGCCGGCGTTTGAGGC
GCGGGGCCCGGGGCAGAGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_081522103.1\|1814727_1815675_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_CP020555.1\|WP_081522102.1\|1812880_1813864_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP020555.1\|WP_081522107.1\|1820830_1822135_-\|precorrin-3B-synthase	unknown	unknown	gnl\|CDD\|274131
NZ_CP020555.1\|WP_081522106.1\|1817857_1818619_+\|cobalt-precorrin-6A-reductase	unknown	unknown	gnl\|CDD\|236144
NZ_CP020555.1\|WP_081522105.1\|1817118_1817868_+\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
NZ_CP020555.1\|WP_030390555.1\|1834777_1836241_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP020555.1\|WP_081525025.1\|1831926_1833219_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|274824
NZ_CP020555.1\|WP_081522110.1\|1829250_1830495_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|234945
NZ_CP020555.1\|WP_081525024.1\|1820186_1820819_-\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|181352
NZ_CP020555.1\|WP_081522108.1\|1822744_1826362_+\|cobaltochelatase-subunit-CobN	unknown	unknown	gnl\|CDD\|235663
NZ_CP020555.1\|WP_030389764.1\|1813968_1814571_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP020555.1\|WP_030389757.1\|1818690_1820190_-\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|381173
NZ_CP020555.1\|WP_053177586.1\|1833410_1834562_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP020555.1\|WP_030390551.1\|1830683_1831226_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP020555.1\|WP_081522109.1\|1826985_1829202_+\|Geosmin-synthase	unknown	unknown	gnl\|CDD\|173835
NZ_CP020555.1\|WP_030390552.1\|1831400_1831868_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224678
NZ_CP020555.1\|WP_159396304.1\|1834551_1834767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081522101.1\|1811390_1812665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081522104.1\|1815865_1817122_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|225151
NZ_CP020555.1\|WP_030390548.1\|1826469_1826691_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_081522103.1\|1814727_1815675_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	4.59406e-101
NZ_CP020555.1\|WP_081522102.1\|1812880_1813864_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	0.000244878
NZ_CP020555.1\|WP_081522107.1\|1820830_1822135_-\|precorrin-3B-synthase	gnl\|CDD\|274131	TIGR02435, Precorrin-3B_synthase, precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.37009e-58
NZ_CP020555.1\|WP_081522106.1\|1817857_1818619_+\|cobalt-precorrin-6A-reductase	gnl\|CDD\|236144	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed.	3.33841e-106
NZ_CP020555.1\|WP_081522105.1\|1817118_1817868_+\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	2.86454e-125
NZ_CP020555.1\|WP_030390555.1\|1834777_1836241_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.04626e-107
NZ_CP020555.1\|WP_081525025.1\|1831926_1833219_-\|serine/threonine-protein-kinase	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	6.71372e-10
NZ_CP020555.1\|WP_081522110.1\|1829250_1830495_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|234945	PRK01346, PRK01346, enhanced intracellular survival protein Eis.	3.70045e-109
NZ_CP020555.1\|WP_081525024.1\|1820186_1820819_-\|precorrin-8X-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	1.74952e-125
NZ_CP020555.1\|WP_081522108.1\|1822744_1826362_+\|cobaltochelatase-subunit-CobN	gnl\|CDD\|235663	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.	0
NZ_CP020555.1\|WP_030389764.1\|1813968_1814571_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.86828e-14
NZ_CP020555.1\|WP_030389757.1\|1818690_1820190_-\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|381173	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH). Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.	1.82135e-114
NZ_CP020555.1\|WP_053177586.1\|1833410_1834562_-\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	6.72776e-54
NZ_CP020555.1\|WP_030390551.1\|1830683_1831226_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.69283e-28
NZ_CP020555.1\|WP_081522109.1\|1826985_1829202_+\|Geosmin-synthase	gnl\|CDD\|173835	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in fungi, bacteria and Dictyostelium.	6.66644e-82
NZ_CP020555.1\|WP_030390552.1\|1831400_1831868_+\|peroxiredoxin	gnl\|CDD\|224678	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism].	8.54346e-18
NZ_CP020555.1\|WP_081522104.1\|1815865_1817122_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.09133e-71

>NZ_CP020555.1|WP_081522107.1|1820830_1822135_-|precorrin-3B-synthase
MLAAMPQPPSAASRDEPVIRERGDACPGALRLHAADDGFLARVRLPGGLLTGPQAAALALAADRFGDGHLELTSRGNVQLRGLADGCGGALAELLDGAGLLPAPSHERVRNIVATPLSGLEGPDRPDALAWAMDFDRMLCASPWAAALSGRFLFAFDDGRGDVASLGPDVTVLGRPAGRALVRLGRAADAVELAGPDAPRAALSAARYFLGAAAEAGTQAWRVSELPVEHALRTVEFVRRLDAAGIAATAVGAVDWPYAPAPRPPGAGTRARATLCVLPPLGRVDSAQWRVLAQVAQEGGGELRVTPWRSVILPSVKGDAPARIEDAGLVVAPDSPWETVTACTGRPGCAKSLADVRADARAVVDRARGPLPVHWSGCERRCGHPRGTAWVDLVATGTGYRITAPGRPVRHDVRPPELAAALADARTDPDVVKK
>NZ_CP020555.1|WP_081525024.1|1820186_1820819_-|precorrin-8X-methylmutase
MFEYEKDGAAIYRQSFATIRAEADLSGLPDTVAQVAVRMIHACGMTDLPQDLGYTPEVVLRARAALEAGAPILCDVQMVASGVTRKRLPAGNDVICTLSDPAVPELAARMGTTRSAAALEVWRDRGLLEGSVIAVGNAPTALFRLLEMIEEGAPRPAAVIGVPVGFIGAAESKDALAAHPSGLDHLIVRGRRGGSAMAAAAVNAIASVAE
>NZ_CP020555.1|WP_030389757.1|1818690_1820190_-|precorrin-2-C(20)-methyltransferase
MSAAEAKGRLYGVGLGPGDPSLMTLRAVEVIAEADVVAYHSARHGRSIARSIAAKHLRADHVEEPLVYPVTTETTDHPGGYQGAMEEFYEAAAARLAAHLDAGRTVAVLAEGDPLFYSSYMHMHKRLADRYETEVIPGVTSVSAAAARLGTPLVEGEEVLTILPGTLSEEELTARLAATDSAVVMKLGRTFPAVRGAMENSGRLAEARYVERATMAGERTGRLADTDPESVPYFAVAVVPSRIGNPGSVPSGPGEVVVVGTGPAGPLWLTPQTRRALADAEVLVGYTTYLDRVPVRPGQIRHGSDNKVESERAEFALDLARRGQRVAVVSGGDPGVFAMATAVLEVAGQAEYKDVPVRVLPGVTAANAAAAAAGAPLGHDYATVSLSDRLKPWEVIAERLRAAAAADLVLALYNPGSRSRTWQVAQARELLLELRSPETPVVVARDVGGPEQTVRIVTLAELEPSEVDMRTILLIGSSQTQVTERADGSRITWTPRRYP
>NZ_CP020555.1|WP_081522106.1|1817857_1818619_+|cobalt-precorrin-6A-reductase
MSAEPTPRPAHHVLILGGTTEARQLAEALASDPSVHVTTSLAGRVASPALPPGDTRIGGFGGIAGLAAWIVAHDVTRVVDATHPFAEQMSFHASEAEALTGVPLLALRRPGWTPQPADDWTFVDSLADAAALLPGFGNRAFLTTGRMGLHTFAHLTDTWFLVRSVDPPAAPVPPRLEVLLARGPFTLEDERELLARHRIDVLLTKDSGGSATAPKLTAAREAGIPVLVVRRPPVPQGVPEADSVDAVLDWLGA
>NZ_CP020555.1|WP_081522105.1|1817118_1817868_+|precorrin-4-C(11)-methyltransferase
MTVYFIGAGPGAADLITVRGARTLAAAPVCLYAGSLVPRELLAECPADARLVDTSQLNLDEIVAEYVRAHAAGQDVARLHSGDPSIFSAVAEQMRRLDAAGIPYEVVPGVPAFAAAAAALKRELTVPTVGQTVILTRIAQQATPMPPGEDLATLGRSGALLVLHLATRYVDRVVDELLPHYGAQCPVAVVAMASRPDELILRGTLSDIAAQVKAHGLVRTAVIVVGRTLGAEQFRDSHLYSAERDRHVC
>NZ_CP020555.1|WP_081522104.1|1815865_1817122_+|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MPVSVVGLGADGWAGLTGAGRSALASAEVLIGGPRQLDLLPAAECAGERVAWPSPLRPAVPKLMAEHAGRRIAVLASGDPMFYGIGRALAEELGPRSLRVHPHPSSVSYACARLGWPVEDTEVVTVVGRPVARLAAALHEGRRVLVLSAGAGSPGEIAALLRERGFGPSRMRVLEQLGSEREDTYEGHADGWDRAPGDPLNVVALDCRRDPAHHAPRLGATPGLPDTAYEHDGQLTKRHVRAATLCALAPAPGELLWDIGGGSGSIGIEWMRTHPSCRAVTVERVPERAARIARNAAALGVPGLRVVIGAAPGALAGLPAPDAVFIGGGLTAPGLLDAVWAALPAGGRLVVNTVTLESEAALTERYKRLGGELVKLAVAHAVPVGGFTGWRQAMPVTQWSVTKSDGPTAGSAEERDRT
>NZ_CP020555.1|WP_081522103.1|1814727_1815675_-|SDR-family-NAD(P)-dependent-oxidoreductase
MPGPSATHIPDQSGRTAVVTGANSGIGYVTARELARSGASVVLACRSAARGRAAVIRLNAEVPGAEAEFMPLDLADLASVREFAAAYGRQHSALDLLINNAGVMALPYGRTADGFETQFGVNHLGHFALTGLLLPRLRAAAPGARIVNVSSGFHVLGRIDPTAADLADPGGAHGYRRWVAYGRSKTANLLFTHELARRFTAAGSPIVAAAAHPGYASSNLHSGASKLEGPSLNSRVAAFGNAFLAQSTTGGALPTLHAATAPGVRPDAFIGPRFGWRGAPAPSWRAGWTLDDRSGELLWAASEKLTGVSYAALPR
>NZ_CP020555.1|WP_030389764.1|1813968_1814571_+|TetR/AcrR-family-transcriptional-regulator
MSPKQQRGEATVDLLLTTALRVFAESGQQGFTVNAVVSASGVSLGSLYHHFGSFDGLAAALYIRCMDQLCDDMVAALTRCRTARTGVRAWVSAYLTFTQEHRDVALFLHASAYSGYLVAHAEEIGAAKADKFAAIMQWLGVRMQRGEIAPLPAPVIEVLVMGPLTEAARRWLSSTYEIDLAEAARYLPDHIWRSLRPDPA
>NZ_CP020555.1|WP_081522102.1|1812880_1813864_+|trypsin-like-peptidase-domain-containing-protein
MVGRVGGRERERRRSRVPAGGSLVVGLLCTVVLAGVGYVAWELRGIAANRADGDPAQGVYQQDPERADKTAAAVLDGIVRDAPEPPTDGKAFAGGGSAADWRYAGWQPSDPLEARPAPAEPAVGALFSPGGDGDPDHHCSAVVVHSPGGDLIATAAHCVYGGGFRTNLAFAPGYRDGVAPYGIWVPTRIDVDPRWTQDQDPDHDVAFLRLRRPGYPGQRLEDVTGAMTLTLGAELPAPARLVGYPNFSEQPLECQNTAVPAGPTQVRLDCADVPNGTSGGPVTTGRTALIGVIGGRDGGGDEETSYSVRFGDDVRALYERSTTSPAP
>NZ_CP020555.1|WP_081522101.1|1811390_1812665_-|hypothetical-protein
MRFLFVHGTGVRRERHDRLFAQVRERLTARFPGAAVDSCYWGDRFGATLGAGGRSVPGLRPGPQDAPDPADAETAAWALLFADPLCELRVLAEAGWQGADGGGGGGYGGGGHGDDPFAMPGVRSAGARVLQLLEGLPPEPPRTGDELGALLHGTGLAPGFAAALDSTARSTEAARAAERATGEPQARELATALARAVTAAALAAAGEEADCTGAERDRLVELLTARLGGDGRVPGARVAAVLGRLALRATTQPLLNARRGSLTVGATPVLGDILRYQSRGRELREFLHESITAEPGPTVLIGHSLGGIALVDLLTLAAARGEAVPGAELLVTVGSQAPFLYELGALTALEPGAKLPYGFPRWLNVYDRHDVLAYLAGPVFPGDPRVTDHEVRSRQPFPACHSAYWKQDSLYERIEQAVAEAEIG
>NZ_CP020555.1|WP_081522108.1|1822744_1826362_+|cobaltochelatase-subunit-CobN
MILLLSTSDTDLLSARAANTADGPVPYRFANPSRLPLDDLPGLLDGADLVVVRLLGGLRAWQDGLDLLLAPGQTRPVVVLTGEQAPDAQLMEASTVPIGIAAEAHGYLAHGGPANLEQLARFLSDTVLLTGHGFEPPAASPTWGPLERTPGTTAGPRIAVLYYRAHQMSGNTSFVHALCDAIEAHDAQALPLYVSSLRTPEPELIAALESADAVVTTVLAAGGTKPATASAGGDDESWDAGALAGLGVPILQALCLTGSRAAWEENDEGLSPLDAATQVAVPEFDGRLITVPFSFKEIDEDGLPAYVADPERAARVAGIAVRHARLRHIDRRDKKVALVLSAYPTKHSRIGNAVGLDTPASAVELLRTLIAGGYDFGPTEDIPGLVSGDGDELIRALIEAGGHDQDWLTEEQLARNPVRIPAADYKRWFAELPAELRDSVTEHWGEAPGNMFVDRSANPEGDIVLAALRRGNLLILIQPPRGFGENPIAIYHDPDLPPSHHYLAAYRWIQARAEDGGFGADAMIHLGKHGNLEWLPGKNAGLSAACAPDAALGDLPLIYPFLVNDPGEGTQAKRRVHATLVDHLVPPMARAESYGDIARLEQHLDEYAQISAMDPAKLPAIRAQIWTLIQAAKLDHDLGLEERPDDDGFDDFLLHVDGWLCEVKDAQIRDGLHVLGGAPTGEARVNLVLAILRARQIWGGTTALPGLREALGLDESKATRTSADEVEAQARALVQAMEDANWSLDAVSSVASGHSADVAAVLSFAAREVVPRLAGTTDEIAHVVAALDGRFIPAGPSGSPLRGLVNVLPTGRNFYSVDPKAVPSRLAWETGQALAESLLTRYRTDNGEWPASVGLSLWGTSAMRTSGDDVAEALSLLGIRPVWDEASRRVTGLEPIPLAELGRPRIDVTLRISGFFRDAFPHVIGLLDDAVRLAASLDEPASDNYIRAHAQADLAEHGDERRATTRIFGSRPGTYGAGILQLIDSRDWRTDADLAEVYTVWGGYAYGRGLEGRPARDEMETAYKRITVAAKNTDTREHDIADSDDYFQYHGGMVATVRALRGTAPEAYIGDSTRPETVKTRTLVEETSRVFRARVVNPKWIEAMRRHGYKGAFELAATVDYLFGYDATTGVVADWMYDKLTETYVLDPTNRAFLEEANPWALHGIAERLLEAESRGMWEKPDPQILESLRQVYLDTEGNLEGESE
>NZ_CP020555.1|WP_030390548.1|1826469_1826691_-|hypothetical-protein
MAIDLDKVLDKAWADKPLAEVLAAPVAALKGVSDEDGKLLHEAFGVKTVADFGQLKYVRWAQALVALNQTVKA
>NZ_CP020555.1|WP_081522109.1|1826985_1829202_+|Geosmin-synthase
MTQPFQLPDFYVPYPARLNPHLEDARTHTKQWARDFGMLEGSGVWEESDLDSHDYALLCSYTHPDCDRDALALVTDWYVWVFFFDDHFLEMYKRSQDRNGAKEYLDRLAAFMPMDLSGGFPEATNPVEAGLADLWARTVPAMSADWRERFSLSTKNLLNESMWELANINIGRVANPLEYIEMRRKVGGAPWSAGLIEYVSAEVPARVAHSRALGVLRDSFSDAVHIRNDIFSYQREVADEGELSNAILVLETFLGCTTQEAAEASNDLLTSRLQQFEQTALVELPQLFADHALDPAEIAAVLAYTKGLQDWQSGGHEWHMVSSRYMNKEARPTAPATLPFLPSGLGTTALDLRSVFTKRSMELRHRSFTHVPFESTGPSVIPEIYMPHRLSLSPHLAHAREESVAWARRMGLLDPQPGDPGSAIWTEERLRGFDFAVCSAGIDPDATPEQLVLNASWLTWGTYGDDYYPVVFARCRNLPAAKATTARLLSMITVDHAEQPEPVTAMERSLGDLWVRTSAGMSVEQRTEFRATLVSMLESWLWEVDNQIQNRIPDPVDYAEMRRHTFGSHLTMYLCRLGHRGRSIPEEIYASGTIRSLENAVADAACLINDIYSYQKEVEVEGEVHNYILVTQNFFDIDYPQALHICHELMTRRTEEFEHIVATQLPVLYDDWKLDAGAREALDAYVGELQDWHAGILNWHQKIRRYRPQDLHPQPDLLATGILGNGFGMSAARISLPA
>NZ_CP020555.1|WP_081522110.1|1829250_1830495_-|GNAT-family-N-acetyltransferase
MVDIREVPESDIDRALELAYLVFHDRPEKEVREKHHALLASCDRIGAYDGAALVGFMAAHDFRLSVPGADLPCPGLTFVCVAPTHRRRGVLTGLMERMLRRTAAAAGPIAALWASEAAIYGRFGYGSATTGATIEIDSSRPLALRIAPDRRPLRLLDPEEALAVIGPFHEAARAGRAGRPTRSAQRWREEWLAEQDEEDEELSPPRIIVLGDPGEPIAGYVLYRTKAEDDAAAVRVPGRVRVDELEADSPAVAAALWECVASLDLTGKVSAWGRPVDDPLLHFAADRDQVRVTAQFPALWVRLVDVRAALTARSWAAPVEVVLEVQDVRLPANAGRFRLKAGPHGATYEHDHPDSGAAADLALDVRELAACYLGGTRVEELVAAGLVREHTPGAAAALDAALRTPVMPHTSDEF
>NZ_CP020555.1|WP_030390551.1|1830683_1831226_+|GNAT-family-N-acetyltransferase
MIEGERVALRALRAQDAEHHLRWRNDPEVVRWATAGDPCFGPVTREALTMFFERMLMLPPRESAVFTVETVADRRVIGMVDYRDLDPWAGTATLGITIGEREFWGRGHGSEALRLLVDHLFGSFPLTRLQLDTWSGNERAVRAFTRLGFREEGRRRAAVLLAGERYDEVLFGMLREEWRP
>NZ_CP020555.1|WP_030390552.1|1831400_1831868_+|peroxiredoxin
MARLHSYATRVTWTGNLGTGTSHYRAYSRAHEVAAGELPAILGSSDPAFRGDASRWNPEQLLLAALSQCHMLSYLHFCTVNGVVVTSYVDEATGTMATAGDSGHFTEVVVHPRITVGEESMVAAAIDLHKEAHRACFIANSVNFPVRHEPTVTVG
>NZ_CP020555.1|WP_081525025.1|1831926_1833219_-|serine/threonine-protein-kinase
MRPARTPRTLRTLGLLAAAALLTALTPLPAAVGAGPAPGSGPGSGPGGGLREVLFVGNNWEGTADVLASTGDLAKVGRIDVVPDKAERLREIYLNPVKLAFFLGIRESAGEGHDQFVDDMYTTPDGSVVVVSRPSFADVVSIDVTSGRINWRFPVSGFRSDHMAVSPDGTRVAVSASTSNTVHVLDITTGRQVGSFGTGDKPHENTFTRDGRFLWNSSIGEVNTALDAPWLDWTKGDRKITVVDAQTFRTVRVIDMRERLDAFGRRDLSDAVRPVSFSPDESKLYFQVSFFGGFLEYDVPSDRITRLKNLPANPATSPDRTTWVNDSRHHGMSMSPDGSKLCIAGTMDDYATVVDRATLAEGPLVPAAKPYWATIDGDGSSCVISESGADQVTAIDFATGAKRVSVPVGDHPQRIRLGHVPAGWTGPGTR
>NZ_CP020555.1|WP_053177586.1|1833410_1834562_-|XdhC-family-protein
MLDIAEELNRWVEQGRDFAVATVVAVGGSAPRQPGAALAVDSEGTAIGSVSGGCVEGAVYELCLQALEDGETVQERFGYSDDDAFAVGLTCGGIIDILVTPVRVGSPAREVFAAGLAAAARGEAAAVARIAQGPAELMGRAVFVRTEGAHQGGFGGHPELDRTVAEEARAMLDAGRTGVLEIGADGRLCGEPLQVLVESSVPPPRMIVFGAIDFASALVRIGKFLGYRVTVCDARPVFATKTRFPEADEIVVDWPHRYLETTDVDGRTVLCVLTHDAKFDVPLLELALKLPVAYVGAMGSRRTHEDRNKRLREVGVTELELARLRSPIGLDLGARSPEETALSIAAEIVANRRGGSGAALTGAHIPIHPDITKTVIDRIGSVA
>NZ_CP020555.1|WP_159396304.1|1834551_1834767_+|hypothetical-protein
MSSMGASSVRFGSSIGYGERSVHDDRVDRIGSTRSIGRSRSTTGAVDRAEQVEQIDQVEQVDQAGLIGGPT
>NZ_CP020555.1|WP_030390555.1|1834777_1836241_-|NCS2-family-permease
MTQSSVEPKTAAEEAGDGSQPPAGRSWLDRYFHITHRGSNIGNEVRGGITTFMAMAYILLLNPLLLSGKDVAGTSMAASAIITATAFAAAVTTLLMGFVGKVPLALAAGLSVSGVLASQVAPQMTWPQAMGMCVVYGVVICLLVVTGLREMIMNAIPLALKHAITMGIGLFVALIGFVKAGFVGRGPEFGPPVQLGAVGELSGWPVMLFCITLIAIFMLQARKVPGAILIGIVGGTVLAAILNAIVDIDPKAWKSGPPELSGSAISKPDFSLFGDVSFGGWGDVGYMTVGMIVFTLVLAGFFDAMATIIGVGTEAKLADDKGRMPGLSKALFIDGAGGAIGGISGGSGQTVFVESATGVGEGARTGLASVVTGLFFAACLFFTPITQIVPGEVASAALVVIGAMMMQNARHVDWSDSATSIPVFLTVVIMPYTYSITAGVAAGVISYVAIKIAQGKAREIGGFMWALTGIFLVFFALNPIEHWLGVG

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Crispr_ID: NZ_CP020555_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_3

3342578-3342663

Orphan

Consensus_repeat	Method
GGGCTTCGCCGCAGGCGACCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_3

>merge|NZ_CP020555|3|3342578-3342663|CRISPRCasFinder
GGGCTTCGCCGCAGGCGACCCGGCATCCGAAGCCGCGGCGCCAGCCTCGGACTTCTCACTGCTGGGCTTCGCCGCAGGCGACTCGG

>NZ_CP020555|3|3|3342578-3342663|CRISPRCasFinder
GGGCTTCGCCGCAGGCGACCCGG	CATCCGAAGCCGCGGCGCCAGCCTCGGACTTCTCACTGCT
GGGCTTCGCCGCAGGCGACTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_003948568.1\|3350660_3351272_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP020555.1\|WP_081522660.1\|3325625_3326942_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_030011164.1\|3351651_3351978_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP020555.1\|WP_030389121.1\|3327897_3329484_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP020555.1\|WP_030389112.1\|3344782_3346012_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_CP020555.1\|WP_053704305.1\|3342843_3344550_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_CP020555.1\|WP_030389124.1\|3325091_3325607_-\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|282080
NZ_CP020555.1\|WP_030389111.1\|3346127_3346598_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_030389108.1\|3349670_3350300_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236607
NZ_CP020555.1\|WP_159396328.1\|3330318_3331968_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081522663.1\|3332169_3333957_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP020555.1\|WP_030389109.1\|3347940_3349440_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NZ_CP020555.1\|WP_053177006.1\|3333986_3335618_-\|succinate-semialdehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|236501
NZ_CP020555.1\|WP_107475517.1\|3337502_3340094_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP020555.1\|WP_081522665.1\|3346671_3347796_-\|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl\|CDD\|236322
NZ_CP020555.1\|WP_030389107.1\|3352120_3353020_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
NZ_CP020555.1\|WP_081522664.1\|3335721_3337377_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP020555.1\|WP_081522661.1\|3326984_3327746_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235743
NZ_CP020555.1\|WP_030389120.1\|3329778_3330042_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236117
NZ_CP020555.1\|WP_081525106.1\|3353110_3353797_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030011164.1\|3351651_3351978_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	6.71868e-28
NZ_CP020555.1\|WP_030389121.1\|3327897_3329484_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP020555.1\|WP_030389112.1\|3344782_3346012_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	2.37032e-126
NZ_CP020555.1\|WP_053704305.1\|3342843_3344550_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	3.61862e-159
NZ_CP020555.1\|WP_030389124.1\|3325091_3325607_-\|DoxX-family-membrane-protein	gnl\|CDD\|282080	pfam04173, DoxD, TQO small subunit DoxD. DoxD is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in BT_0515.	4.04359e-11
NZ_CP020555.1\|WP_030389108.1\|3349670_3350300_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	4.71734e-88
NZ_CP020555.1\|WP_003948568.1\|3350660_3351272_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.73082e-50
NZ_CP020555.1\|WP_081522663.1\|3332169_3333957_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.8301e-50
NZ_CP020555.1\|WP_030389109.1\|3347940_3349440_-\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP020555.1\|WP_053177006.1\|3333986_3335618_-\|succinate-semialdehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|236501	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.	0
NZ_CP020555.1\|WP_107475517.1\|3337502_3340094_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.22458e-17
NZ_CP020555.1\|WP_081522665.1\|3346671_3347796_-\|GuaB3-family-IMP-dehydrogenase-related-protein	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NZ_CP020555.1\|WP_030389107.1\|3352120_3353020_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.0536e-57
NZ_CP020555.1\|WP_081522664.1\|3335721_3337377_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.22994e-104
NZ_CP020555.1\|WP_081522661.1\|3326984_3327746_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235743	PRK06208, PRK06208, class II aldolase/adducin family protein.	6.06185e-113
NZ_CP020555.1\|WP_030389120.1\|3329778_3330042_+\|chorismate-mutase	gnl\|CDD\|236117	PRK07857, PRK07857, chorismate mutase.	7.3549e-32
NZ_CP020555.1\|WP_081525106.1\|3353110_3353797_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.07908e-58

>NZ_CP020555.1|WP_107475517.1|3337502_3340094_-|protein-kinase
MEEYAGRILAGRYRLPLPPSDEYELVETRAFDTRSGQEVLVRQVPLPEIVDAELLDGHRAVPAARRSPADLPAVRRAIEAAQAAASIPDHPRLDQVFDVFAEGESLWIVSELVPARPLAALIADEPLSPYRAAEVASDVLTALRVLHAHGWTHRNITVRTVLVCEDGRVVLTGLAAGAAEEALCGYDPVPSAEDTGVATGWGTGPAPAPGTGAVPLPAQASAPAPTPAPMQVPAPAPVVLPDPDPDPAPAAGPVDLRTEPPAAYAPLVAPGYDTGPRYNDHITPGRPQERPDLQAAARAGAIAAYRAGARAAAARVIEERRAGAGTEIEAGSPPPERRPEGSTLPHGYSYPYGGPETGTASWHGATPRRAELPAATPEPEPERERERETESDPEPLLEGPVREALPQPRPQPEPWPEPRPEQAPAPDLQPERPALPARLALPQGYRQAEAEAPATPTPGQPQSSGWTGPRTGLDAERARQTRMAVVGAVTERWAPEQAGPVHGHWQLAAPVGPATDLWALGALLYRAVQGHAPYPEDSVAELVEMVCAEPPAFAEECGALRPIVESLLRQDPTERPDFEELRGWLRSLVRSAPEPDAGFGVLPMPEPDPARLPVVRRRGEVHGRHRNPSAPRKPRALGRTLLVGILVLLAGAVAYALLFMPRAADPEAAGDARGSTGQAPAKPSPSQVPSGTPESKPAPQTTEPAASQPAPAPAPAGYTTQQDPEHFEIAVPDGWERRGINESGQVRYTDGQFVLTVVPGRDKVQGNPDPAAYQKDKEPELTPYRTSTWSTVGDVKTTKVGQQLRASGRYTWIDGTGRNVFARNFVVALGGSYHVVLVTGPEDEQSKVTEVFEKATASYKAGG
>NZ_CP020555.1|WP_081522664.1|3335721_3337377_-|serine/threonine-protein-kinase
MEQQTGGGDVLAGRYRLVEPIGRGGMGKVWRAHDELLHRTVAVKELTAGLYVAQADRDVMHARTQKEARAAARIQHPAVVTVHDVLEHDDRPWIVMEYIDGPSLAEAAKAAGRIEPREAARIGLHVLGALRAAHAVGVLHRDVKPGNVLLAKDGRVLLTDFGIAAIEGDSSITRTGEIVGSIDYLAPERVTGGSPDPSSDLWSLGATLYTAVEARSPFRRTSPISSLQAVVNDEPPALRQAGALGPIITALLRKDPAERPSAAEAERMLLEAMEGREPKAAQAYVPTRAVSPEELAPAQDRPEEPRPAPQRDVAQTAALPEPAISGTVSAAAAAPADRDGGWIKRAAVVALVAALLGGGGVFGILKYTGDDGQESDPDRIVSSTGGQSGDSGKPQAATPPAGYKKVVDPLAGFTLFVPEGWTRKANGDQIDYTPDDGKHFIRIAADPTPDYRDPLAHLLDLETQVAKRTDYKKVRLNQNTFRDSTRAALWDFTYTEKQNHPGPRRAKEQMYIAPDGTEYAIYMSSPVASWATTEQQFDVVLTGWEPPAKQP
>NZ_CP020555.1|WP_053177006.1|3333986_3335618_-|succinate-semialdehyde-dehydrogenase-(NADP(+))
MTDSQAPDAPLRTAPQPTNPVAPAPAGARTAADVVTPDLVARLTRGVIGSGRTANHTPFTGDRLAELPEATPEDVAEAFDRARAAQPAWAAVPVRKRAAVLLRFHDLVLARQAEVLDLIQLETGKARLHAHEEVQAVAVSARHYGRKAPGYLRPKGHTGAMPTLTKVTELRQPRGVVGQIAPWNYPLELSVGDALPAFVSGNALVMKPDTETALTALWARDLLIEAGLPAEVFQIVLGEGPVVGPEVVRHADYVSFTGSTRTGREVARGAADRLVGVSLELGGKNAMLVLHDADIEKAAAGAVRACFSSAGQLCISIERLYVHASIADAFVERFAARTKAMRLGASLAYGADMGSLVGTRQLETVQRHVDEAVAKGATLVAGGTARPDIGPLFYEPTILDGVEAPMAVCGEETFGPVVSIYRFTDEDRAIDEANATAYGLNSSVWTKDSRRGHAVAARLRTGTVNINEGYAPAYGSAQAPMGGMKDSGLGRRHGSEGILKYTEAQTVAHQRLLPMAPSLGMDDEKYAAFMTRSLQVMKALRLR
>NZ_CP020555.1|WP_081522663.1|3332169_3333957_-|GMC-family-oxidoreductase
MSESYDYDVIVIGSGFGGSVSALRLTEKGYRVGVLEAGRRFTRESLPKNSWDLRNYLWAPALGLYGIQRIHLLGNVMVLAGAGVGGGSLNYANTLYVPPTAFFEDRQWASITDWRSELAPYYEQAKRMLGVRLNPTMTPSDVHLKAAAEKMGVADSFHMAPVGVFFGDGDDAEGQPKVRPGQEVPDPYFGGAGPTRRACTECGECMTGCRHGAKNTLNENYLHLAERAGAVIHPMTTVTALSDHPEGGYRIRTVPTDGRRRGRAKVLRARYVVVAAGTYGTQTLLHTMKDRGELPRLSQRLGELTRTNSEGLVGAQTDDRRYRKRHGDGSGRAQRADFTRGVAITSSVHPNADTHIEPVRYGRGSNAMGFMTVLQVPHSKHRVRAWLGRTVRHPLQLARSLSNRRWSERTIIGLVMQSLDNSLTTYRKPGGIGKGLLTARQGHGAPNPVQIAEATQAATLLAEEINGFPGSNIGELMGTPLTAHFLGGCPIGASPEEGVVDPYHRLYGHPGISVVDGSAVSANLGVNPSLTITAQAERAMSYWPNKGERDPRPEQGTAYVRLDAVEPVRPAVPKEAFGALRLPFLAVPEVPPRQP
>NZ_CP020555.1|WP_159396328.1|3330318_3331968_-|LPXTG-cell-wall-anchor-domain-containing-protein
MSLLAAGALVALGLATTPAHAADPVFTLAGPAGIGLRPHPGQSGEPQKTSVEFRILNDSTKTFDRQSTFTIDLTPLKGIADVTLAKEQQGANCTLAATAVTCTRWALWTGETTVVGLDVRAAKDSKVGRTADLTVTGRAEGATFKSATTKVRVGGPDLVLDRADLKAQLKPGDKQNLPIIFANEGTDPVNGVVLEVRTTHGIGLVEQYDNCSYSEDSAAGQPWNTGWSTVQCLLEGEYEPGALYGVDGPLTLKAAPHAFVDGLTYAVYAAGDQPKSGKHRTPAGGKKLAVAKQAGKASAQSAQQTGDLDPRDNIQEFDFATRNTADLVAAGVSLKGKAGETVRADFGFRNNGPAWVAYLRSGESVARTDIVIPAGAKATRVPAGCTGVNANGTPREQALGAPRYFCSTGHVVGEAATFSYPFELKIETVVADAKGSVTVGEWTAEGTTPHRWDPNAANNKGAFVINAKDGGPAPTPTTSVGPTPTASATATATATASASATGTGSGTTANGGLASTGSSAAAIALGGAVLVAAGGGLFLAFRRKAGGHA
>NZ_CP020555.1|WP_030389120.1|3329778_3330042_+|chorismate-mutase
MTTITTTPEQLIADSRGRIDALDDRIIGLIQERMAVSTVIQDARIASGGRRVHLSREMEVLSHWSDALGKPGTALAMTLLELCRGRV
>NZ_CP020555.1|WP_030389121.1|3327897_3329484_-|glutamine-hydrolyzing-GMP-synthase
MPEAPSAAHDSAPDTVLVVDFGAQYAQLIARRVREARVYSEIVPSSMPVDEMLAKQPKAIILSGGPSSVYEEGAPRIDRALFEAGIPVFGMCYGFQLMAVTLGGQVDNTGAREYGRTPLAVSKNGSTLFEGTPANQSVWMSHGDACSAAPEGFAVTASTDVVPVAAFENDEKKLYGVQYHPEVMHSTHGQQILEHFLYRGAGLAPTWTTGNIVEEQIAAIREQVGDKRAICGLSGGVDSAVAAALVQKAIGSQLTCVYVDHGLMRKGETEQVEKDFVAATGVQLKVVDAQERFLTALAGVSDPETKRKIIGREFIRVFEQAQLEILQEDGPAVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDIEFELVEPLRQLFKDEVRMVGQELGLPDEIVQRQPFPGPGLGIRIVGEVTKERLDLLREADAIARHELTAAGLDREIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMTADWTRMPYEVLARISTRITNEVPDVNRVVLDCTSKPPGTIEWE
>NZ_CP020555.1|WP_081522661.1|3326984_3327746_-|class-II-aldolase/adducin-family-protein
MPDQPVPVPVERLGFEMPPVHDTVEAARAHRKERLAEALRLLECLGYGDGVAGQITARDPEFEDCFWVNPFGRALGALTADDLLLVDGDGRVVRGARRVNQLAFAVHAAVHRRRPEVVAVVRAQGPYGRALAALGELLAPITEEACAFYEDHALLDEYSGADEPERTALALGPYKALILRNRGLLTVGDSVDAAVWWFIEAERAAQVQLIARAAGKPVPADHRAAALTRQRFGSDLAAWVSYQPLRERVASTS
>NZ_CP020555.1|WP_081522660.1|3325625_3326942_-|hypothetical-protein
MPQWCTIRWHCTVVQRGGTYVAVQEMSRGTHTTACACEECAREGHRRAVAAFLEKRDEFASGRGVPAAVAHSLGASRQWVSDELTLSARTVADRGREAGSSWLYLFSRRAVLAVWIAAGVLLLVQVAAALGTGWSTARTAGLLAALALAGLLTVAARAQSVRGGLLAPLVGEDNRLSTSKAVPSAWVVLTAFATLLPALRLAASAPGPERQALYAGLALDRALPLLAVVSLTSGVAVLVRRVVSVRIMGQRLQKLPADRPRGADLLTDDAGRGSFPDAQYVLVSTVVLGYAAVCLARFPDRLPQLPWALALLVALSAAVYLAAKYAEGSRPLVLSVVRRREPGDLDAAVRPGDDIEIRGVGFVPPGAQTPEMLARLVVRVGAVHVHVPLVPVAGGFTNPSDAVLTVPVPAEVEPGRVEVQVVTAAGVESNRCTIDVAE
>NZ_CP020555.1|WP_030389124.1|3325091_3325607_-|DoxX-family-membrane-protein
MNRTDVLETDAPRDAVGLRELASRHALLPLRLFLGVTFVYAGIDKLTDPAFLSASGDGSIGDLMRGVRDTSAIPGLVDLSLNSPVGFAVALAIGEILVGLGALVGLLTRIAAVGGALIALSLWLTVSWAVTPYYYGNDLIYMMAWTPLILAGAPYLSLDSVIRSRLSRRTA
>NZ_CP020555.1|WP_053704305.1|3342843_3344550_-|glycerol-3-phosphate-dehydrogenase/oxidase
MRTATLGPTQRAEALSRMAERELDVLVVGAGVVGAGTALDAVTRGLSTGLVEARDWASGTSSRSSKLIHGGLRYLEMLDFALVREALKERGLLLERLAPHLVKPVPFLYPLQHKGWERLYAGSGVALYDAMSVSSGHGRGLPVHRHLSRARALRVAPALRKDALVGALQYYDAQMDDARYVTTLVRTAAAYGAHCANRARVVGFLREGERVVGARVRDVEAGGEYEIRAKQVVNATGVWTDDTQALIGERGQFHVRASKGIHLVVPKDRIHSSTGLILRTEKSVLFVIPWGRHWIVGTTDTDWDLDKAHPAASSADIDYLLEHVNSVLAVPLTRDDVQGVYAGLRPLLAGESDATSKLSREHTVAHPVPGLVVVAGGKYTTYRVMAKDAVDEAVHGLDQRVADCVTEDVPLVGAEGYRALWNGRARIAARTGLHVVRVEHLLNRFGSLTEELLDLMAADPGLREPLSGADDYLRAEIVYAASHEGARHLDDVLTRRTRISIETFDRGTRSARECAELMAPVLGWDKQQIEKEVEHYEKRVQAERESQRQPDDQTADAARLGAPDIVPL
>NZ_CP020555.1|WP_030389112.1|3344782_3346012_+|nucleotide-sugar-dehydrogenase
MPADLAVIGLGHLGLPLAQAAVAAGIETVGYDSGPVTDSTLTAAEIRRMSAAGFRVTTNPAELGRVRTAVICAPTQLGADRALDLSAVGEAGRALAARLRPHTTVILESAAHPGVTEDYLRPILEAGSGLRAGRDFHLAYSPSRHDPGNRTHGISNTPKVIGGLTPACTESAHAFYARLTEKVVRARGLREAETVQLLETNYRHVNIALMNEMAVLCHDLGVDLWDVIRCAETKPYGFQAFRPGPGVGGHGVPLDPNYLPHTTRTPGHPLRMVGLAQEINNRMPQYVIQRSATLLNEHGKSARGARVLLLGVTYKPDLADQEGSPACEIASRLLDLGALISYHDPYITGWRVRDQPVPRAESLYEAAANADLTILLQHHRTYDLQGLAVKAQLLLDTRGASPVGAAHRL
>NZ_CP020555.1|WP_030389111.1|3346127_3346598_+|hypothetical-protein
MSQNFTPPAPDSYTAAPAPAPARTGNIGLAILGALAAALAAGAAYGGLMGAIEYQIGYAAAGVGFLVGLVAVRLGGSNPVLPVLSALLTLAGVYAGYLLTEAMFIAKANPPLTATELLTSHLADVHQSYLDNFDPISVLFFAIGAYAAFQTARKAA
>NZ_CP020555.1|WP_081522665.1|3346671_3347796_-|GuaB3-family-IMP-dehydrogenase-related-protein
MTEIEIGRGKRGRRAYAFDDIAIVPSRRTRDPKEVSIAWQIDAYRFELPFLAAPMDSVVSPQTAIRIGELGGLGVLNLEGLWTRYEDPQPLLDEIRELDEEAATRRLQEIYSAPIQADLIRQRIKEVRDSGVVTAAALSPQRTAEFSKAVVDAGVDIFVIRGTTVSAEHVSGAAEPLNLKQFIYELDVPVIVGGCATYTAALHLMRTGAAGVLVGFGGGAAHTTRNVLGIQVPMATAVADVAAARRDYMDESGGRYVHVIADGGVGWSGDIPKAVACGADAVMMGSPLARATDAPGRGNHWGMEAVHEDVPRGKKVDLGTVGTTEEILTGPSHTPDGSMNIFGALRRSMATTGYSELKEFQRVEVTIADSQHSR
>NZ_CP020555.1|WP_030389109.1|3347940_3349440_-|IMP-dehydrogenase
MTADGVPDKFATLGLTYDDVLLLPGASDMSPDAIDTSSLISRNVRVNVPLLSAAMDKVTEARMAIAMARQGGVGVLHRNLSIADQANQVDLVKRSESGMVTDPITVHPDATLGEADQLCAKFRISGVPVTDAGGKLLGIVTNRDMAFESDRSRQVREVMTPMPLVTGKVGISGVDAMELLRRHKIEKLPLVDDAGILKGLITVKDFVKAEKYPNAAKDKDGRLLVGAAVGVAGDAYERAQALIEAGADFIVVDTAHGHSRLVGDMVAKIKSNSTVDVIGGNVATRDGAQALIDAGCDGIKVGVGPGSICTTRVVAGIGVPQVTAIYEASLAAKAAGVPVIGDGGLQYSGDIAKALVAGADTVMLGSLLAGCEESPGELLFINGKQFKSYRGMGSLGAMQSRGDQRSFSKDRYFQEGVGGDDKLIPEGIEGQVPYRGPLSAVVHQLVGGLRQSMFYVGGRTVPELQDRGRFVRITSAGLKESHPHDIQMTVEAPNYSRKG
>NZ_CP020555.1|WP_030389108.1|3349670_3350300_-|sigma-70-family-RNA-polymerase-sigma-factor
MRDDEALGSPAATGPTGAAKGGSAGGVSALVRRAVEGDEQATHDLLAFVHPLAIRYCRTRLSRLPGDARHFVEDLAQEVCVAVLMALPRYRDTGRPFEAFVFAIAAHKVADLQRAAMRHPGSTAVPSDEMPERPDDSLGPEERALLSSDAAWAKKLLANLPENQRELLVLRVAVGLTAEETGQMLGMSPGAVRVAQHRALSRLRALAEQ
>NZ_CP020555.1|WP_003948568.1|3350660_3351272_-|response-regulator-transcription-factor
MTSVLVCDDSPLAREALRRAVATVPGVERVTTAANGEEVLRRWGADRSDLILMDVRMPGLGGVETVRRLLSADPGARIIMLTVAEDLDGVALAVAAGARGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLVR
>NZ_CP020555.1|WP_030011164.1|3351651_3351978_+|WhiB-family-transcriptional-regulator
MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSAREASAKEVCMRCPVRSECAAHALAVREPYGVWGGLTEDEREELMGRARHRLIPASSAIGPIAPN
>NZ_CP020555.1|WP_030389107.1|3352120_3353020_-|LysR-family-transcriptional-regulator
MIEARHLRVLRAVAGTGSFSAAARELGCTQPAVSQQMKALEQSAGTPLLIRTGREMRLTQAGEALVRHAAGILAGLTAAEEEVAAIAGLRAGRVRLVSFPSGSSTLVPTALAAMRAEHPGTRISLVEAEPPRSVEMLREGDCDLALAFRYGGAAHSAAEWDDLVVRPLLTDRLVGLVPQGHRLAGAERVGMAELADEPWIAGCPRCRRHLVEVCEGVGFTPRIDFATDDYPAVVGLVGAGLGVAVLPELAVESVRAKGVSTVAVEPAVEREVVALTLPDLARVPAVAATLAELERAAAR
>NZ_CP020555.1|WP_081525106.1|3353110_3353797_+|MOSC-domain-containing-protein
MHLISVNLGRATAVDYSDAEGGVTGIGKRPVPGPVRVVAPGPKATGLGSGLEGDAVCDRRHHGGDHQAVYAYAREDLDLWERSLDRELPAGIFGENFTTSGIDLNTARLGDRWRVGADLVLEVASARIPCRTFQGALGEAGWVKRFTKEARPGAYLRVIEEGSVSPGDAIEVIHRPDHEVTVELWFRAFTTERALLPLTLAAGGAMEPEAHERVRLYVEKYGAGAGAK

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Crispr_ID: NZ_CP020555_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_4

3358371-3358453

Orphan

Consensus_repeat	Method
CGGGCCGCCCGCAGGGCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_4

>merge|NZ_CP020555|4|3358371-3358453|CRISPRCasFinder
CGGGCCGCCCGCAGGGCACCCGGCAGAGCCCGGCACACCGCCGCGAGCCGCACACCGCCGAGCCGCCCGCAGGGCACCCGGCA

>NZ_CP020555|4|4|3358371-3358453|CRISPRCasFinder
CGGGCCGCCCGCAGGGCACCCGGCA	GAGCCCGGCACACCGCCGCGAGCCGCACACCGC
CGAGCCGCCCGCAGGGCACCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030011164.1\|3351651_3351978_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP020555.1\|WP_081522668.1\|3363747_3365100_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274868
NZ_CP020555.1\|WP_081522666.1\|3354698_3355409_+\|ester-cyclase	unknown	unknown	gnl\|CDD\|377824
NZ_CP020555.1\|WP_081522667.1\|3360595_3361792_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP020555.1\|WP_003948568.1\|3350660_3351272_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP020555.1\|WP_081525109.1\|3365986_3366856_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP020555.1\|WP_030389108.1\|3349670_3350300_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236607
NZ_CP020555.1\|WP_030389107.1\|3352120_3353020_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
NZ_CP020555.1\|WP_053169722.1\|3363333_3363618_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_030389109.1\|3347940_3349440_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NZ_CP020555.1\|WP_051779974.1\|3361779_3363216_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP020555.1\|WP_081525108.1\|3365096_3365516_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|369472
NZ_CP020555.1\|WP_081522669.1\|3366870_3367818_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP020555.1\|WP_053704308.1\|3358513_3359194_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP020555.1\|WP_107475519.1\|3359186_3360539_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020555.1\|WP_030389102.1\|3357221_3357530_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP020555.1\|WP_030389105.1\|3353828_3354602_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP020555.1\|WP_030389103.1\|3355477_3357109_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP020555.1\|WP_081525106.1\|3353110_3353797_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP020555.1\|WP_078937989.1\|3367890_3369144_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|380115

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030011164.1\|3351651_3351978_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	6.71868e-28
NZ_CP020555.1\|WP_081522668.1\|3363747_3365100_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	0.0022777
NZ_CP020555.1\|WP_081522666.1\|3354698_3355409_+\|ester-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	1.14383e-28
NZ_CP020555.1\|WP_081522667.1\|3360595_3361792_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.71768e-59
NZ_CP020555.1\|WP_003948568.1\|3350660_3351272_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.73082e-50
NZ_CP020555.1\|WP_081525109.1\|3365986_3366856_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	8.98673e-32
NZ_CP020555.1\|WP_030389108.1\|3349670_3350300_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	4.71734e-88
NZ_CP020555.1\|WP_030389107.1\|3352120_3353020_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.0536e-57
NZ_CP020555.1\|WP_030389109.1\|3347940_3349440_-\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP020555.1\|WP_051779974.1\|3361779_3363216_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	6.12663e-80
NZ_CP020555.1\|WP_081525108.1\|3365096_3365516_-\|UTRA-domain-containing-protein	gnl\|CDD\|369472	pfam07702, UTRA, UTRA domain. The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to pfam04345. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.	1.43218e-19
NZ_CP020555.1\|WP_081522669.1\|3366870_3367818_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.13564e-36
NZ_CP020555.1\|WP_053704308.1\|3358513_3359194_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.19866e-78
NZ_CP020555.1\|WP_107475519.1\|3359186_3360539_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.35976e-56
NZ_CP020555.1\|WP_030389102.1\|3357221_3357530_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.63622e-48
NZ_CP020555.1\|WP_030389105.1\|3353828_3354602_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.68946e-78
NZ_CP020555.1\|WP_030389103.1\|3355477_3357109_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP020555.1\|WP_081525106.1\|3353110_3353797_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.07908e-58
NZ_CP020555.1\|WP_078937989.1\|3367890_3369144_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|380115	pfam18096, Thump_like, THUMP domain-like. This is a domain of unknown function found in bacteria.	9.7062e-19

>NZ_CP020555.1|WP_030389102.1|3357221_3357530_-|co-chaperone-GroES
MTTTSSKVAIKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRFEDGQRLPLDVTVGDIVLYSKYGGTEVKYSGEEYLVLSARDVLAIVEK
>NZ_CP020555.1|WP_030389103.1|3355477_3357109_-|chaperonin-GroEL
MAKILKFDEDARRALERGVNKLADTVKVTIGPKGRNVVIDKKFGAPTITNDGVTIAREVELDDPYENLGAQLVKEVATKTNDIAGDGTTTATVLAQALVREGLRNVAAGASPAALKKGIDAAVKAVSEELLATARPIEDKSDIAAVAALSAQDQQVGELIAEAMDKVGKDGVITVEESNTFGLELEFTEGMAFDKGYLSPYMVSDQERMEAVLDDPYILINQGKISSIQDLLPLLEKVIQAGASKPLLIIAEDVEGEALSTLVVNKIRGTFNAVAVKAPGFGDRRKAMLQDMATLTGATVIAEEVGLKLDQAGLDVLGSARRVTISKDDTTIVDGGGSHEEVLGRVNQIKAEIESTDSDWDREKLQERLAKLAGGVCVIKVGAATEVELKEKKHRLEDAISATRAAVEEGIVSGGGSALVHAVKVLEGNLGLSGDEATGVAVVRRAAVEPLRWIAENAGLEGYVITSKVAELDKGQGFNAATGEYGDLVKAGVIDPVKVTRSALENAASIASLLLTTETLVVEKPAEDEGDAGHGHGGHGHSH
>NZ_CP020555.1|WP_081522666.1|3354698_3355409_+|ester-cyclase
MTFVQVIDYETRRFDEMNALIDRWAEQSSGRRTATHTMIGQDREARNHYVDMVEFPSYEEAMKNSHLPETDRMFQEMVALCEGMPKFMNLDVVRDEHLNKQLARRVFEEAAMGGNMGVLDECFATNYIDHDVSKAESTVIGRDAMRSDMETWRAAFDMTFEPQAMLAEGDMVTTVWNWRGTHKGTFMGVPPTGKTYEMSGSTTFRCLEGEIVEGWWHYNTAALQRQMGGSGSPYGT
>NZ_CP020555.1|WP_030389105.1|3353828_3354602_+|SDR-family-oxidoreductase
MTTALITGSTAGIGAAFARRLAAQGHNLVLVARDTKRLGEQATELHDRHGIEAEVLAADLSTEEGIAAVERRLDDRTHPVDLLVNNAGFGNKGRYLEVSMADELTMLKVHIEAVLRLTSAATASMRSRGRGGVINVASVAAFVPRGTYGASKAWVVQFTQGAARDLGGSGVRLMALCPGFVRTEFHERAGMGTDNIPSWMWLDADKLVASALADLARGKTVSIPDPRYKALMGVVKLTPRGLLGGVSSRTGRKYGPQ
>NZ_CP020555.1|WP_081525106.1|3353110_3353797_+|MOSC-domain-containing-protein
MHLISVNLGRATAVDYSDAEGGVTGIGKRPVPGPVRVVAPGPKATGLGSGLEGDAVCDRRHHGGDHQAVYAYAREDLDLWERSLDRELPAGIFGENFTTSGIDLNTARLGDRWRVGADLVLEVASARIPCRTFQGALGEAGWVKRFTKEARPGAYLRVIEEGSVSPGDAIEVIHRPDHEVTVELWFRAFTTERALLPLTLAAGGAMEPEAHERVRLYVEKYGAGAGAK
>NZ_CP020555.1|WP_030389107.1|3352120_3353020_-|LysR-family-transcriptional-regulator
MIEARHLRVLRAVAGTGSFSAAARELGCTQPAVSQQMKALEQSAGTPLLIRTGREMRLTQAGEALVRHAAGILAGLTAAEEEVAAIAGLRAGRVRLVSFPSGSSTLVPTALAAMRAEHPGTRISLVEAEPPRSVEMLREGDCDLALAFRYGGAAHSAAEWDDLVVRPLLTDRLVGLVPQGHRLAGAERVGMAELADEPWIAGCPRCRRHLVEVCEGVGFTPRIDFATDDYPAVVGLVGAGLGVAVLPELAVESVRAKGVSTVAVEPAVEREVVALTLPDLARVPAVAATLAELERAAAR
>NZ_CP020555.1|WP_030011164.1|3351651_3351978_+|WhiB-family-transcriptional-regulator
MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSAREASAKEVCMRCPVRSECAAHALAVREPYGVWGGLTEDEREELMGRARHRLIPASSAIGPIAPN
>NZ_CP020555.1|WP_003948568.1|3350660_3351272_-|response-regulator-transcription-factor
MTSVLVCDDSPLAREALRRAVATVPGVERVTTAANGEEVLRRWGADRSDLILMDVRMPGLGGVETVRRLLSADPGARIIMLTVAEDLDGVALAVAAGARGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLVR
>NZ_CP020555.1|WP_030389108.1|3349670_3350300_-|sigma-70-family-RNA-polymerase-sigma-factor
MRDDEALGSPAATGPTGAAKGGSAGGVSALVRRAVEGDEQATHDLLAFVHPLAIRYCRTRLSRLPGDARHFVEDLAQEVCVAVLMALPRYRDTGRPFEAFVFAIAAHKVADLQRAAMRHPGSTAVPSDEMPERPDDSLGPEERALLSSDAAWAKKLLANLPENQRELLVLRVAVGLTAEETGQMLGMSPGAVRVAQHRALSRLRALAEQ
>NZ_CP020555.1|WP_030389109.1|3347940_3349440_-|IMP-dehydrogenase
MTADGVPDKFATLGLTYDDVLLLPGASDMSPDAIDTSSLISRNVRVNVPLLSAAMDKVTEARMAIAMARQGGVGVLHRNLSIADQANQVDLVKRSESGMVTDPITVHPDATLGEADQLCAKFRISGVPVTDAGGKLLGIVTNRDMAFESDRSRQVREVMTPMPLVTGKVGISGVDAMELLRRHKIEKLPLVDDAGILKGLITVKDFVKAEKYPNAAKDKDGRLLVGAAVGVAGDAYERAQALIEAGADFIVVDTAHGHSRLVGDMVAKIKSNSTVDVIGGNVATRDGAQALIDAGCDGIKVGVGPGSICTTRVVAGIGVPQVTAIYEASLAAKAAGVPVIGDGGLQYSGDIAKALVAGADTVMLGSLLAGCEESPGELLFINGKQFKSYRGMGSLGAMQSRGDQRSFSKDRYFQEGVGGDDKLIPEGIEGQVPYRGPLSAVVHQLVGGLRQSMFYVGGRTVPELQDRGRFVRITSAGLKESHPHDIQMTVEAPNYSRKG
>NZ_CP020555.1|WP_053704308.1|3358513_3359194_+|response-regulator-transcription-factor
MRILVVEDEEGLAESLRRGLSADGHRVDIAHDGHLGMDLALAGGPYDVVLLDLMLPGPSGHAICTRMRAHGDTTPVLMLTARDGEYDEAEGLDSGADDYLTKPFSFVVLAARIRALARRAGAPDRGTLQAGDLVLDPQGRRCRRGDRDIELTARELGVLACLMEQPGRAVAKQDILDEVWDSPHGIDPNIVEVYVSSLRKKIDAPFGRRSIRTVHGTGYRLAPDGG
>NZ_CP020555.1|WP_107475519.1|3359186_3360539_+|HAMP-domain-containing-histidine-kinase
MVSSIRARTAAAAALAMAAVLAAGGLWLHALLRANLLDNTTGRAELAARKVAAQLDSRTLPPGGRLPAPESGVDLVLVRDEAGRTVASTGSGTGDPKHTPDLAGAPRPGPGEDSRSAVLPPARPGGERRAVVVVNAPGAHTVYAMTVLGDVDDATRAVAIGLLAGGPPLAGFAAALAWWVTGRALRPVNAIRRELAAVTASELDRRVPDPGGADEIARLARTVNDTLDRLERSDARQRQFTADASHELRNPLAAVRSRLEVALAMDRPDRESVGAALADTERLQRIAADLLLLARLDGGPAPRSEPVDLALLAAEDAARRGGPRGDARVSLRLDARAPVPASGDPARLERALANLVDNALRYARAEVVVRAAEHDGWRLLEVTDDGPGIPEADRDRVFERFVRLDADRGRASGGTGLGLAIAREIARAHGGDVRALPAPGGGARLVLRIR
>NZ_CP020555.1|WP_081522667.1|3360595_3361792_+|LCP-family-protein
MSAHRRKPTTRSRRPSRRRRAVRTLLVTGCALGALAGGGAWYLYRDLAAGIGSSKALEGAEKSKSGDSNILLVGLDSRRDRNGEKLPEEVLDKLHAGSSDIGGYNANTLILLHVPGDGSRAKAFSVPRDDFVDIPGHGKDKIKKAYGLAKEKKQEQLAAQGVTDVRQLERDGREAGRAAQIETVRNFLGVPIDHFAELNLAGFYHLADALGGVPVCLNRAVKDSYSGADFPAGPQTLDGRQSLAFVRQRHGLERGDLDRTKRQQAFLAGATKKLNSAGTFTDPAKLIKLIDAAKQDVVTDEGWDLLAFVKQAKNLSGGKVQFTTLPIEGFGRNHGEDINVVDDMKIKRLITEQIGPKASPGPGAPSSPAAPSPSSPPSPSSPPSPPASRDGGGIPCVD
>NZ_CP020555.1|WP_051779974.1|3361779_3363216_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MRGLKPLTTAVARRRTEALLLLFVIAIAVFGHAAAGLAMNDELPPNLAGFTISMTLLSLVGHLGVRRFAAYADPLILPLAMLLTGLGLVLLHRLDQGYIERYNSDANAPGQLMWTVVGVAACLLVLALLRDHRLLQRFIYITMAVALVLLIAPAFFGADTYGAKRWIKLFGFSLQPGEFVKIMIAIFFAGYLVVHRDSLALTGRRFLGMRLPPMRQLGPIVTVWIVSMLVLVFERDLGTSLIFFGVFVVMLYVATERTSWIVCGLLMAAAGAFVVGSTEPHVKARVAAWLNPLSYYWENRPAGVTSDQSAQALFSFGTGGISGTGLGMGHPELIAFAGRSDFILTTVGEELGLAGVMAVLILYALLVQRGLRMALGARDPFGKLLAVGLAAALALQVFVVAGGVTGLIPLTGKALPFLAKGGSSLLANWIMIALLLRISDSAERQREADTHGPAETTITPLVSAEARPGGSEREPLGR
>NZ_CP020555.1|WP_053169722.1|3363333_3363618_-|hypothetical-protein
MYAAVRRYEGVTDPAEAGRLVDEGFVPIMRQVPGFVAYYWVDAGGGVMVSTSVFRDRAGIDESIARAAQFVRDNLAQFLPNPPQVTAGEVVASA
>NZ_CP020555.1|WP_081522668.1|3363747_3365100_+|tetratricopeptide-repeat-protein
MDAAVLHRRTNMHDECVPPDLVDRLLALGHAEVVRRQAVAEDGDWFCARAWARLLAGRGELDEALEVLAPYVATGWWTAAAEAARLLDAGGRGEEAVALVRPFASQGELSALHDLALLLARHGQGEEAYELLLPHVTDWMLAEALVEVGVGLGRGDEVAELLEACRAPGMPCAHCGSPECGRPYMEPFNAVNLLALVREKQGRTDEAIAVLHSPGATVVNNRDPLAELLVRHDRIDELRAYVAGPGTHEALRRLAELLEERGDVAGAVDVYRKHGEEDRLNTAVLLAELLARHGRGAEAIEVMRAPDSAEDWVVDLLCKLFAAEGRAEEGLAHLDALKARRGEEEWELFRLRGPLMAACGRLDEALAEARAHPEGGSWYATESLACLLIDAGHPEEAIALLDTDRLDHRWPLGPALVELGRVEEAVTLLRTPRPRTPPPRPTAYSDTPPF
>NZ_CP020555.1|WP_081525108.1|3365096_3365516_-|UTRA-domain-containing-protein
MHARTRRGCRRVPPGALCGQGTRVWARSRRFVLDGKPVLFAVSHLPSDIVADSAVTQVDTGPGGTYARLAELGHAPVHFREEIRCRMPSADEAERLSLSIGTPVVRIVRTAFAEGGRVVEVNEMTLDSASYVLEYGFDA
>NZ_CP020555.1|WP_081525109.1|3365986_3366856_-|polysaccharide-deacetylase-family-protein
MVAGTLAAGALALSLTGCGDNVDTTERLGRKTAEATPDAGGATPSAAPSGATPAPGGASDEAYKKWGLTAPLQYAPKPARKPQIPKPTAGKVPVIDRIPVAPDDKVVFLTFDDGAEKDPEFLKMAADLKLPISMFLTDNVASSDYGHFEKLRDNGSASTINNHTLSHPNLRTLSFEGQKKEICGQQDRLEKRFGQRPPLFRPPFGNYNDDTLRAASECGVSSLVLWRVSMQINNFQYAEGSALKPGDIVLAHFRGPGELKGTTETQMTTRMLQRIQEQGYRIGRLEDYL
>NZ_CP020555.1|WP_081522669.1|3366870_3367818_-|polysaccharide-deacetylase-family-protein
MQLVRQKGNKSQQGHRYAAGPRGRFGVAVAALLVAALGTACGSGDSGPDKAAKEKAAKAAEAGAAGALSAAEKAKAAQQARVVAAKKWGLRKTPLAAPPAPKEKPEITTRDGFEVEDQEEYPHVFTTVPTEDKVVFLTIDDGSEKDPEFLKMMQELKIPYTAFLSDYVVRDNYPYFKKMQAAGVTLNNHTLNHRYMPGLSYEQQREEICGQQDTIQKQFGKRPTLFRPPYGNYNQDTLRAAKSCGIKAVPLWNAEAFTNRMDYREWDRDLHPGDIILTHFRGKEDWKGTMPDMIRHVMKTVTDKGYAVARLEDYL
>NZ_CP020555.1|WP_078937989.1|3367890_3369144_+|methyltransferase-domain-containing-protein
MAHTVRVPPVADNGAVTPEDFAALLAPEGRALLDSLRDYDPAQELAVATRLRREHPAGLVSAALGQARLRQRAVAKFGAEDAFRMYFTPGGGEMATRASVASYRAERLAALGVRSLADLCCGIGGDALALARLGIRVLAVDHDPLTVAVARANAEALGLADLIEVREADVTEVDTSGYDAVFIDPARRGGRGRIFDPESYSPPLSWAVETARAAKYAAIKIAPGIPHEAVPAEAEAEWISDQGDVKEAVLWFGTAPGTVRATLLPGPRGLHTADPLPDPAAGPVGRWLYEPDGAVIRAHLVAEVAEQLDGRLIDPTIAYVTADELRATPYATAYEITDVLPFGLKKLKALLRERGVGILTVKKRGSAIEPEELRRKVKPQGPNSATVFLTRVAGAPSMLIGAPAVPPAGPPAATLDG

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Crispr_ID: NZ_CP020555_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_5

3816618-3816703

Orphan

Consensus_repeat	Method
GCGGTCGGGTTGGGGGCGCTGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_5

>merge|NZ_CP020555|5|3816618-3816703|CRISPRCasFinder
GCGGTCGGGTTGGGGGCGCTGTCGGCCGGATGCGGGGGAGCGGTCGGCCGGCTCCGGCGGCGCTGTCGGGTTGGGGGCGCTGTCGG

>NZ_CP020555|5|5|3816618-3816703|CRISPRCasFinder
GCGGTCGGGTTGGGGGCGCTGTCGG	CCGGATGCGGGGGAGCGGTCGGCCGGCTCCGGCGGC
GCTGTCGGGTTGGGGGCGCTGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030383696.1\|3828769_3829663_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP020555.1\|WP_030383682.1\|3813017_3813683_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP020555.1\|WP_037858854.1\|3811476_3812208_+\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375613
NZ_CP020555.1\|WP_078626035.1\|3810846_3811191_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP020555.1\|WP_030383691.1\|3823141_3823813_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP020555.1\|WP_081522852.1\|3819459_3820542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP020555.1\|WP_030383678.1\|3810209_3810809_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP020555.1\|WP_030383677.1\|3809569_3810217_-\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP020555.1\|WP_081522853.1\|3821798_3823145_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP020555.1\|WP_053701333.1\|3816106_3816592_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP020555.1\|WP_030383681.1\|3812280_3812931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081522848.1\|3815472_3816102_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153234
NZ_CP020555.1\|WP_081522856.1\|3827171_3828773_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226089
NZ_CP020555.1\|WP_081522847.1\|3813932_3815294_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
NZ_CP020555.1\|WP_081522854.1\|3823901_3825239_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP020555.1\|WP_081522855.1\|3825924_3827133_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP020555.1\|WP_030383676.1\|3808174_3809449_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP020555.1\|WP_030383693.1\|3825235_3825895_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP020555.1\|WP_081522850.1\|3818540_3818930_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP020555.1\|WP_081522849.1\|3816806_3818459_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030383696.1\|3828769_3829663_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.17167e-86
NZ_CP020555.1\|WP_030383682.1\|3813017_3813683_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.57243e-26
NZ_CP020555.1\|WP_037858854.1\|3811476_3812208_+\|SLATT-domain-containing-protein	gnl\|CDD\|375613	pfam18183, SLATT_2, SMODS and SLOG-associating 2TM effector domain 2. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is the only prokaryotic SLATT family to exist as a standalone domain, with no as-yet discernable genome associations.	1.31328e-122
NZ_CP020555.1\|WP_078626035.1\|3810846_3811191_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	4.91846e-37
NZ_CP020555.1\|WP_030383691.1\|3823141_3823813_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.42755e-73
NZ_CP020555.1\|WP_081522852.1\|3819459_3820542_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.62982e-34
NZ_CP020555.1\|WP_030383678.1\|3810209_3810809_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.24603e-123
NZ_CP020555.1\|WP_030383677.1\|3809569_3810217_-\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	1.31251e-47
NZ_CP020555.1\|WP_081522853.1\|3821798_3823145_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.8819e-37
NZ_CP020555.1\|WP_053701333.1\|3816106_3816592_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	2.51625e-12
NZ_CP020555.1\|WP_030383693.1\|3825235_3825895_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.08265e-73
NZ_CP020555.1\|WP_081522848.1\|3815472_3816102_+\|glutamine-amidotransferase	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	1.29378e-61
NZ_CP020555.1\|WP_081522856.1\|3827171_3828773_-\|ABC-transporter-permease	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	2.91656e-103
NZ_CP020555.1\|WP_081522847.1\|3813932_3815294_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP020555.1\|WP_081522854.1\|3823901_3825239_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.32451e-30
NZ_CP020555.1\|WP_081522855.1\|3825924_3827133_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.16404e-93
NZ_CP020555.1\|WP_030383676.1\|3808174_3809449_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP020555.1\|WP_081522850.1\|3818540_3818930_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.74266e-12
NZ_CP020555.1\|WP_081522849.1\|3816806_3818459_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	7.94655e-79

>NZ_CP020555.1|WP_053701333.1|3816106_3816592_+|MarR-family-transcriptional-regulator
MDSRTRQDLLSSTALGVFRLNGQFLAISEELARPAGLTAAWWQVLGAVLREPLPVAGIARSMGITRQSVQRIADLLVDKGLAEYAPNPAHRRAKLLRPTQEGRDAVDRIGPGHAALAARLAAELGDAAFAETVHALERLATALDTLEAAAAIPGPAASDGP
>NZ_CP020555.1|WP_081522848.1|3815472_3816102_+|glutamine-amidotransferase
MSETPRKPVHLAVYDTYADWETGHTTAHLTQRGHLVRTVGIDAAQPVTTMGGLRIQPDLALADLRPEDSSLLILTGASLWDTSEDLAPFAAKAREFLAAGVPVAAICGATAGLAREGLLDGRTHTSGASFYLAEQPGYGGADGYVEADAVTDGDLITAGPTEPVAFAREVFARLDVYKPDVLDAWYGLFHDSDPDAYPVLMAASAAGDA
>NZ_CP020555.1|WP_081522847.1|3813932_3815294_-|aspartate-aminotransferase-family-protein
MTPHVTPHTLAAVKDADRKHVFHSWSAQALIDPLAVAGAEGSYFWDYEGKRFLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTLAPGFAVDVRSEAARLIAERTPGDLDKIFFTNGGAEAVENAVRMARLHTGRAKVLSTYRSYHGATAAAINLTGDPRRWPSDTAAAGVVHFWGPYLYRSAFHATTEAEECARALAHLADTIAFEGPQTIAAIILESVPGTAGIMTPPAGYLAGVRELCDRHGIVFILDEVMSGFGRTGQWFAADHWGVTPDLITFAKGVNSGYVPLGGVAISDAIAETFATRPYPGGLTYSGHPLACAAAVATINTMEEEGIVEHAAHLGENVIGPALAEIAERHPSVGEVRGLGAFWALELVRDKETREPLVPYNAAGADNAPMAEFAAACKASGLWPFVNMNRTHVVPPCNVTEAEAKEGLALLDEALTVADRHTTAG
>NZ_CP020555.1|WP_030383682.1|3813017_3813683_-|GntR-family-transcriptional-regulator
MPGSGAVTRNTLRQQIADALRDEVLAGRLPPGTEFTVKQIAEQYEVSATPVREALVDLSAQGLLELVQHRGFRVRIFTVDDFRGMIEARSLVVDGIFRRLAERGTAPGSGELLVSVRRRGEEARRAAQSGSLEVLIGYDLRFWRELSGLVANTYISEFLHRIRVQCWVFAVPHLQREPQLRAALWDGHSELVDAVTLADADAVRGLVQGYNEHALAWAARL
>NZ_CP020555.1|WP_030383681.1|3812280_3812931_-|hypothetical-protein
MACDLWLVPLVDVLCHSPDNPFAEEIASYDKALGAAGLPSVPVFAYMPGLSGDVAPVAGFDYDALHFLRRAYLLQLCGLPVTPVDELGGDYEQLLEMFEPTAQQSHLVWHYDHAGAYVPVDFAAPLANEELLAGGGPLGSVQGLLRELLFVAPAIGIDPGNPPAAPAPPGRPTLLEEPAGPIPYDDSPFARERHVWLGLHAAATRSLGQGSMIIFS
>NZ_CP020555.1|WP_037858854.1|3811476_3812208_+|SLATT-domain-containing-protein
MQPEGPPRDPREEGGGPMAAGDLTGRPFPLGDWGEPAERLDELYRRVEADALRTAEWYLSDRAWKRRGARVLRAGAAVGAVTGASMPLLELTGSIPGASTYGYLALLLGAAALACDRFFGLTSGWMRDVATAQAVQRRLQTLQFDWASENVREVLGPTEGTASEAAERCLTVLRRFSEDITELVRSETADWMVEFRAGPAPLVMQSLGSSGGRADANIPPARFPLPPGTRPNMPRQRPPEQPR
>NZ_CP020555.1|WP_078626035.1|3810846_3811191_-|YbaB/EbfC-family-nucleoid-associated-protein
MIPGGGQPNMQQLLQQAQKMQQDLAAAQEELAHAEVEGQAGGGLVRATVTGSGELRALVIDPKAVDPEDTETLADLVVAAVQAANENAQALQQQKLGPLAQGLGGGSGIPGLPF
>NZ_CP020555.1|WP_030383678.1|3810209_3810809_-|recombination-protein-RecR
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTVICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIKPMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV
>NZ_CP020555.1|WP_030383677.1|3809569_3810217_-|DUF5063-domain-containing-protein
MSDATLHALGQDPDDFAASIADQIESFIVAVTEVAKGEDPDSAVPFLLLEVSQLLLAGGRLGAYQDVLPDERYEPDLGPEPDVDDLRERFAIMLEPVDVYSEVFDPYEPRKAPVAHRISDDLADVVADLRHGLIHHQSGRITEALWWWQFSYFTNWGPTASATLRALQSLIAHVRLDQPLAALDGLDTDEDLAEDDLAEQAGAVMAEELGGLGRK
>NZ_CP020555.1|WP_030383676.1|3808174_3809449_-|aspartate-kinase
MGLVVQKYGGSSVADAEGIKRVAKRIVDAKKNGHQVVVVVSAMGDTTDELIDLAEQVSPMPAGREFDMLLTAGERISMALLAMAIKNLGHEAQSFTGSQAGVITDSVHNKARIIDVTPGRIRTALDEGNIAIVAGFQGVSADSKDITTLGRGGSDTTAVALAAALDAEVCEIYTDVDGVFTADPRVVKKARKIDWISSEDMLELAASGSKVLLHRCVEYARRYNIPIHVRSSFSGLPGTWVSNENPQGDAQVEHAIISGVAHDVSEAKITVVGVPDKPGEAAAIFRAIADAEINIDMIVQNVSAASTGLTDISFTLPKAEGHKAIEALEKAKGAIGFDSLRYDDQIGKISLVGAGMKTNPGVTASFFQALSDAGVNIELISTSEIRISVVTRQDDVNEAVRAVHTAFGLDSDSDEAVVYGGTGR
>NZ_CP020555.1|WP_081522849.1|3816806_3818459_+|serine/threonine-protein-kinase
MEQLHPYDPHQIGPYRLLSRLGAGGMGQVYLARSDRGRTVAVKLVHHDLAAREEFRIRFRQEVDAARRVGGEWTAPVLDADTEAATPWFATGYVAGPSLRQVVAHEFGPLPGRSVRILAAGLAYALQDIHRAGIVHRDLKPSNVLITLDGPRVIDFGIARAPAGSAAGPDRPDPGLTRVGEVIGSPGFMAPEQIRGEPVTAACDIFCLGAVLVYAATGRLPFGDAEQPGGLAGLLLRSTGAEPDLTGVPAELHDLVRDCLRADPAARPGPAEVLARVGAGDTVADGRALEPWLPAPLVAGLGRHAVRLLDREDAGPDRAAAPPPPAPAPAVPAYSAAVPAPSYPAYPGYPGYPAHPGCPPGVSQPQPQPLPPRPRTASTALLLVVATLVAVLSAGTVYAVMSGAEDPRPPVGTGRTPSASASSAASASASASASPSASASAAPYGALPEAYLGTWEAVQDGRTWTLTLSRGAVGDPVMSLAVEGSGFACAWSAPLRSASEPVELDASTVTSGAPPTCTPGAWSRLRLLPDGTLSRELAGSDNPPLTYRRQ
>NZ_CP020555.1|WP_081522850.1|3818540_3818930_+|nuclear-transport-factor-2-family-protein
MEPLKVVARLWERIEARDWDGVAALIAEDAVIEWPVSGERIVGRANFIAVISDDGCTDERSVELLRILADGNLVVTEVEMPQEHVVYRAVSLWTVRDGEVVGAREYWTSPGQDPAPRWRAGYVEPLAAD
>NZ_CP020555.1|WP_081522852.1|3819459_3820542_+|hypothetical-protein
MATGTGTGAGTGAVTGPGTGSGAGSGPGAGAEVCGAGTVRASRRAGAGRGRLRRTLLGALVAAAVAVPISAAASPHVPAPAPAVFAEDAAPQSRYAANRANIAEAVRRAEDADRPGRAARLRTMEASGAAQFLVFDGRGRGRAVEVFGELESADRVAVLVPGSDTTLDTYERFRAGALSLQQRLQREHPRSAVVAWLGYDTPGTVSTTVVTAGRADEAAAELGPFLDRLRGLAGPGARLSLLCHSYGSVVCARTATGPAVGDMALFGSPGTGAGSVRELPTGARVWAGRGDGDWIGNVPHVRLGGIGFGTDPVDPAFGARAFRAGAVGHSDYLKPGTASLDSLAAIVLGTTAPDPEADHG
>NZ_CP020555.1|WP_081522853.1|3821798_3823145_+|sensor-histidine-kinase
MSRARLSLDGVNQQSAPPADDRTRLPRGLARELFTLKRDPLPKMSRPRWLAWLPHVVLCYVAIPCGVLTGMQLNDHYKVYGSAVLGLSLLTSASVVLSMFRPIAAWWLALVTAASTAWVIHDHVGQGQSWPWTPAGPLTLAPVLLMVALRVPPRVTVSVIGITLTLNGLADIVLRPPQSQTIIGGVALLFAFVGILGYALRATRLARTKLVEQETLTEEERARRTLLEERSRIARELHDVVAHHMSVISIQAQVAPHLVENPSEELKENLAGIRENALKALTELRRVLGVLRSEQPDDPATRQHPQPTLAELDGLVDNVRGAGLDVTTEIAGIRRPLTPGVELTAYRIVQEALSNALRHAPGSRVEVGIAYGPRDLHLCVANSAPTRSAPPSPGAGHGLLGMRERAGMLGGELAAGPRPDGGYEVSAVLPMDPQDLPAVLAPETKKAS
>NZ_CP020555.1|WP_030383691.1|3823141_3823813_+|response-regulator-transcription-factor
MSTPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGADAVAKVAELAPDVVLMDIRMPGMGGIEATSVITAVPDAAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIEALTERETEVLSLIAQGLSNAEISEHLVLAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLIRPTGY
>NZ_CP020555.1|WP_081522854.1|3823901_3825239_+|two-component-sensor-histidine-kinase
MTDTTTGGTARTPEFRMASEVIGTLRQDLLTDAFAYRPLPLAEGPGRFARVLPRVLRQYAPWRQYAAVAALAFLVLLFTVNTHSGYLGDAAQLAMGLIAAVPVLMTLVRPIAAWWAAVAMTVVLAALGGAVNWPWPPGSFLSYIAVMVLVTLRTRPRVAAWMWALTLALGFALTVVLGNRWGSNLPEMAVTSAFALVIAGSIQIRRAARAEVSAQQEVTAVERDKRTLLEERTTIARELHDVVAHHMSVVAIQAEAAPYRVKNPPPELEAAFVTIRENAVAALTELRRVLGVVRSADYEAPDAPQPTLASLDGLLANVREAGLSVEKTITGAVRELPQGVELSAYRIIQEALSNTLRHAPGAAAGVEVSYVLGGLGIRIVNDPATGDARPSPGAGHGITGMRERVAMLEGEMTAGRTADGGYEVAVFIPVPHRPEPVPEPQGEQA
>NZ_CP020555.1|WP_030383693.1|3825235_3825895_+|response-regulator-transcription-factor
MTIRVLIVDDQVMVREGFSVLLNAMDGIEVVGEAVDGREAIDQVAALRPDVVLMDIRMPRMNGLEATREIVAADTDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLIVEFSKISEARRLADPAGAGELTERETEVLVLIAQGLSNAEIADRLVVAESTIKTHVSRILVKLGLRDRTQAAVYAYETRLVTPA
>NZ_CP020555.1|WP_081522855.1|3825924_3827133_+|cytochrome-P450
MGFDPWDAAFVADPYPAYRELREQGRAVWCEATGQWLVPHYADVSALLRDRRLGRTYLHRFTHEEFGREAPPPEHEPFHVLNGNGLLDLEDPAHARVRRLVAKAFTPRTVERLVPAVQRLAGELVGRLRADGGGDLLSVVAEPLPVAVIAELLGVPEADRGLLRPWSADICGMFELRPDEETARRAVRASVEFSAYLRGLIAERRTRPGEDLISGLIAAHDEDGRLSEQEMISTCVLLLNAGHEATVNTTVNGWWALFRNPAELAALRASRDPEKLSTAVDELMRYDTPLQMFERWVLDDIHIGDTVIPRGAEVVLLFGSANRDPARFDEPDALDLVRADNPHLTFGAGIHYCLGAPLARRELEASFGALLADGVPPLRLVEEPQWQDGYVIRGLKQLLVEF
>NZ_CP020555.1|WP_081522856.1|3827171_3828773_-|ABC-transporter-permease
MTDQLAGTGTLLRLALRRDRVMMPVWILLTTLLVVSMPGSLGSVYATAAERARAAASMNANSSMRALYGPVFGDSLGALTAWRGGVYAAVLAAVMSLVIVVRHTREEEETGRQELLSAAMVGRRAPLTASLLAALAADAAVALLIAGGLAGQGAPGALALGLAVAGTGMLFACTAAIAAQLTESARAAKGITAAALGAAFVLKAAGDAGTQGGRSALTRVSPLGWVENVRAFAAERWWVLLLFAAAVAVQAGAAYVLAGRRDLGMSFLPSRPGPAEGRLGTAGALARRLQRGSVLGWSAAFLIAGVVFGGMADGAADLVGDNDRTREIIERMGGSGGSGGSGGSGVLTDAFLATMAGMFGMVAALYAVASVLRLSGEESGQRAEPLLANAVGRLRWAGGHLAVAFGGSALILLLAGLGLGLGHGRGLGAAIGATLAQLPAVWLIGALAALLYGAVPQYAAAAWAVAGGVLALGWIGPALNLPQGVLNLSPFAHLPRLPGAQALDWTPLLALTALAVALTAAGLGALRHRDMIA
>NZ_CP020555.1|WP_030383696.1|3828769_3829663_-|ABC-transporter-ATP-binding-protein
MTKAISVAGLHKAFGRTCALDGLDLSVATGEVHGFLGPNGAGKSTTIRVLLGLLRADSGTAELLGGDPWADAVSLHRRIAYVPGDVTLWRNLSGGEVIDLYGRLRGGLDRTRRAELVERFELDPTKKGRTYSKGNRQKVALVAAFASDAELLVLDEPTSGLDPLMEEVFQSCVAEARAAGRTVLLSSHLLSEVEALCDRVSIVRKGRTVESGTLAELRHLTRTSISAELAGPPNGLAHLPGVHDVEVQGLKVRLQADTDKLDAVLRSLTASGVRSLTSTPPTLEELFLRHYTEEASR

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Crispr_ID: NZ_CP020555_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_6

4257192-4257562

Orphan

Consensus_repeat	Method
GTGGCGGCTTCCGNCGCGACGACCGTCCGTCGGGTGGCTTC	CRT

5 spacers

The CRISPR arrays of NZ_CP020555_6

>merge|NZ_CP020555|6|4257192-4257562|CRT
GTGACCGCGGTGACCGTGGTGGCCGTCCGTCGGGTGGCTTCAACCGTGACGACCGTGGTGGCGACCGTGGCGGCTTCCGCCGCGACGACCGTCCGTCGGGTGGCTTCCGCTCCGGTGGCGACCGTCCGGCCGGTGGCGGCTTCCGTCGCGACGACCGTCCGTCCGGTGGCTTCAACCGTGACGACCGTGGTGGCGACCGTGGCGGCTTCCGCCGCGACGACCGTCCGTCGGGTGGCTTCCGCTCCGGTGGCGACCGTCCGGCCGGTGGCGGCTTCCGTCGCGACGACCGTCCGTCGGGTGGCTTCAACCGTGACGACCGTGGTGGCGACCGTGGCGGCTTCCGTCGCGACGACCGTCCGTCGGGTGGCTTC

>NZ_CP020555|6|1|4257192-4257562|CRT
GTGACCGCGGTGACCGTGGTGGCCGTCCGTCGGGTGGCTTC	AACCGTGACGACCGTGGTGGCGACC
GTGGCGGCTTCCGCCGCGACGACCGTCCGTCGGGTGGCTTC	CGCTCCGGTGGCGACCGTCCGGCCG
GTGGCGGCTTCCGTCGCGACGACCGTCCGTCCGGTGGCTTC	AACCGTGACGACCGTGGTGGCGACC
GTGGCGGCTTCCGCCGCGACGACCGTCCGTCGGGTGGCTTC	CGCTCCGGTGGCGACCGTCCGGCCG
GTGGCGGCTTCCGTCGCGACGACCGTCCGTCGGGTGGCTTC	AACCGTGACGACCGTGGTGGCGACC
GTGGCGGCTTCCGTCGCGACGACCGTCCGTCGGGTGGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030390750.1\|4263213_4264026_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP020555.1\|WP_081523027.1\|4246700_4250633_-\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|182986
NZ_CP020555.1\|WP_159396342.1\|4250977_4251166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_003949541.1\|4245736_4245943_+\|developmental-transcriptional-regulator-BldC	unknown	unknown	gnl\|CDD\|133390
NZ_CP020555.1\|WP_053176974.1\|4251223_4251970_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP020555.1\|WP_081523032.1\|4260841_4261858_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP020555.1\|WP_081523034.1\|4265377_4267150_-\|sporulation-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP020555.1\|WP_081525154.1\|4258373_4258886_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP020555.1\|WP_081525155.1\|4271515_4272022_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP020555.1\|WP_107475720.1\|4253672_4254122_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NZ_CP020555.1\|WP_081523030.1\|4254638_4255175_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP020555.1\|WP_053177344.1\|4264100_4265303_-\|L-2-hydroxyglutarate-oxidase	unknown	unknown	gnl\|CDD\|183292
NZ_CP020555.1\|WP_030390747.1\|4267753_4269994_+\|asparagine-synthase	unknown	unknown	gnl\|CDD\|238949
NZ_CP020555.1\|WP_081523029.1\|4254118_4254493_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|223317
NZ_CP020555.1\|WP_081523033.1\|4261766_4263170_-\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143
NZ_CP020555.1\|WP_053701317.1\|4251966_4252803_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_CP020555.1\|WP_076046684.1\|4253238_4253580_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240572
NZ_CP020555.1\|WP_081525152.1\|4244338_4245169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_079405395.1\|4259326_4260541_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP020555.1\|WP_081523035.1\|4270094_4271369_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030390750.1\|4263213_4264026_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	8.89099e-86
NZ_CP020555.1\|WP_081523027.1\|4246700_4250633_-\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NZ_CP020555.1\|WP_081523035.1\|4270094_4271369_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.45665e-13
NZ_CP020555.1\|WP_003949541.1\|4245736_4245943_+\|developmental-transcriptional-regulator-BldC	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	3.77068e-14
NZ_CP020555.1\|WP_053176974.1\|4251223_4251970_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	2.7524e-30
NZ_CP020555.1\|WP_081525154.1\|4258373_4258886_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.02245e-24
NZ_CP020555.1\|WP_081523034.1\|4265377_4267150_-\|sporulation-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	6.58205e-05
NZ_CP020555.1\|WP_081523032.1\|4260841_4261858_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	7.8807e-36
NZ_CP020555.1\|WP_081525155.1\|4271515_4272022_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.57516e-18
NZ_CP020555.1\|WP_107475720.1\|4253672_4254122_+\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	2.82794e-32
NZ_CP020555.1\|WP_081523030.1\|4254638_4255175_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	4.76596e-06
NZ_CP020555.1\|WP_030390747.1\|4267753_4269994_+\|asparagine-synthase	gnl\|CDD\|238949	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .	0.00020155
NZ_CP020555.1\|WP_081523029.1\|4254118_4254493_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	7.6831e-34
NZ_CP020555.1\|WP_081523033.1\|4261766_4263170_-\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	2.68351e-46
NZ_CP020555.1\|WP_053701317.1\|4251966_4252803_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	3.4467e-24
NZ_CP020555.1\|WP_076046684.1\|4253238_4253580_+\|metallopeptidase-family-protein	gnl\|CDD\|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	9.68553e-47
NZ_CP020555.1\|WP_053177344.1\|4264100_4265303_-\|L-2-hydroxyglutarate-oxidase	gnl\|CDD\|183292	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase.	0
NZ_CP020555.1\|WP_079405395.1\|4259326_4260541_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.85471e-41

>NZ_CP020555.1|WP_081523030.1|4254638_4255175_+|hypothetical-protein
MRQLSASLRLAVTALAVAATAGCMSVGEDAAKPGPPAPGDRRSGAEAGAGTVSGRGSGVHGNGHGTKDGTGSQDGRAKEDGKASGATGASPSAGAPSGRPGEPAPSAGPVGGAGGQGPQQPTSGGGSGGPGGPGGSAGGQQSASPTPEPPAPTPPVTEPTPAQPSPQPEPSTVPAPEL
>NZ_CP020555.1|WP_081523029.1|4254118_4254493_+|fluoride-efflux-transporter-CrcB
MNWLIVVAGAAVGAPLRYLMDRAVQARHDSAFPWGTFVVNASACLVLGALAGAALEGAASSQVRLLLGTGLCGALSTYSTFSYETLRLAERGHRFLAAANVVVSVLVGLGAVHLGSQVARQLFA
>NZ_CP020555.1|WP_107475720.1|4253672_4254122_+|CrcB-family-protein
MDPDVDLHVPAQRAEPRGRVLAAVAVGGAVGGAARYGISLLWPAGPGAFPWATLWINASGSALIGVLMVLISEGGRTSPHPLLRPFAGVGVLGGFTTFSTYAVDFSRLLDEGEAGTALAYAGLTVVAALGAVWAAASVARFAVRGRVPR
>NZ_CP020555.1|WP_076046684.1|4253238_4253580_+|metallopeptidase-family-protein
MTREEFEELVAEALDRIPPELTRLMDNVAVFVEDEPPADDPELLGLYEGTPLTDRGEWYAGVLPDRITIYRNPTLRMCEDRESVVAETEVTVVHEIAHHFGIDDERLHALGYG
>NZ_CP020555.1|WP_053701317.1|4251966_4252803_+|cytochrome-c-biogenesis-protein-CcdA
MTHIGYLAALLGGLLALLSPCSALLLPAFFAYSIDSTSRLLARTGIFYAGLASTLVPLGAAGSYAGRFFHSNRDQLVLAGGWLIIALGLAQILGLGFAPKRIAQLSGRIRPTTALSVYALGAVYGLAGFCAGPILGSVLTVAAVSGSPVYGGLLLAVYALGMALPLFLLALLWERFDLGRRRWLRGRAFAVGRFELHTTSLLSGLFFITLGALFLAYDGASALPGLLDVDDSFAVEQWVGSLADAVPDGALLGLVAAGALAVGVVQWRRRSRPTGETE
>NZ_CP020555.1|WP_053176974.1|4251223_4251970_+|thioredoxin-domain-containing-protein
MPSSTSSTSKTSTKPLLISAGVALAAITLGIVSWQATAPDAAGSAGSGSGSGAVAAPRTDPAAELKALARRESGDKLAVGRADAPVVLIEYSDFKCGYCAKFARDTEPELVKKYVADGTLRIEWRNFPIFGAESEAAARAAWAAGQQDRFEAFHAAAYADGSKDKGFAEPRLVELAREAGVPDLERFKADLAGEQAAAALKKDQEEGYRIGVTSTPSFLLNGRPIAGAQPLDTFTAAIARAKAEAAKQ
>NZ_CP020555.1|WP_159396342.1|4250977_4251166_+|hypothetical-protein
MAPERGGAPAVPARAWGEHAQVPPARAAPEEAGPPAAVPVRPLVRGPDRPAPDRLELCVMRV
>NZ_CP020555.1|WP_081523027.1|4246700_4250633_-|ATP-dependent-RNA-helicase-HrpA
MSTSFAALQTLLGEISLRDAHRLGRRLEGARRIRKPEAKQAVLDEIATEATRAAERLAGRASRMPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAARTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILLAEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVVITSATIDPERFSRHFGEAPIVEVSGRTYPVEVRYRPLLEEGTEDAEDADRDQITAICEAVDELQSEGPGDILVFLSGEREIRDTADALNKRNLRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDDFEARPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPAEKDPKKRLTQMGRQLSQLPVDPRLARMVIEADKNNCVREVMVIAAALSIQDPRERPSDKQTQADQNHARFKDETSDFLSYLNMWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYSQLRTVARSMGIHVNEADAPEQVIHVSLLAGLLSHIGLKDTDKNEYLGARSAKFAIFPGSSLFKKQPKFVMSAELVETSRLWARVNAKVEPEWVEPLAQHLIKRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKINYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRKLLTEVEELENRARRRDIVVDDETLFDFYEQKIPAHVVSGAHFDSWWKHKKREEPELLDFEREMLLTEKAAGVTKADYPDSWRQGPLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQIPGLREEVVTELIRSLPKPIRRHYVPAPNYAGRFLDTAVPLQEPLPVTLARELQRMVGVPVSAEDFDLGRIPDHLKITFRIIDERRKNLAEDKDLEALRLKLKPKARQALSKAAAATAERAGGESVERTGLTDWTIGTLTKVFETRRAGQPVKAYPALVDEGATVSVRLFDTEAEQQQAMWLGTRRLILLNIPVNPAKFASDHLTNQQKLALSRNPHGSIQALFDDCATAATDRLIADHGGPAWDEAGFRRLYEAVRADLVDTTVRTVGQVQQVLAAWQACERRLKGTASLALVANVQDVKTQLAALMPAGFVTLTGLRRLPDLMRYLVAVDRRLQQMPTGVQRDTTRMEKVHEMQDEYAWLLEQLPKGRPVPSTVTDIRWMIEELRVSYFAHALGTAYPISDKRIVKAVDAAAP
>NZ_CP020555.1|WP_003949541.1|4245736_4245943_+|developmental-transcriptional-regulator-BldC
MTARTPDAEPLLTPAEVATMFRVDPKTVTRWAKAGKLTSIRTLGGHRRYREAEVRALLAGIPQQRSEA
>NZ_CP020555.1|WP_081525152.1|4244338_4245169_+|hypothetical-protein
MPSARSAPTVPYASYLRVYEPLTAFAEPERTHWSDYARRGAAPSAQDELRRSLADLVRVPVVGVPAHESADAFTAVVDGVLLVCPWRTRLRGWLALEELVEWFPRPVLDAALPPGARRRAAEEYEHWRERNPDARPWIRTGVWQIPLRWFVLVADEEREYVPGERLRYRTPMVQARRRLARALRTLRDAEGYGMLADGLVEVGSWLEEFHPRSMVELDYGGLLHALPADRLAADRSAGDLAAGIAALRAGDTEGATEVYGELAERWRAVRERLFAN
>NZ_CP020555.1|WP_081525154.1|4258373_4258886_+|GNAT-family-N-acetyltransferase
MTPVLRTERLLLDPYTPEDEEGFVALFQDVRVSRWMGDGTATEAEDRALFGRVFTKVYAENLFDVWAVRRDGRLVGHAEIKRTDAVGGHEIIYALAPEAWGAGLGTEIAEAIVAYGFDALGLAEVHATVAESNTASLVLLERIGFSHVRVVREDDGSTTRVLTRRRDRAA
>NZ_CP020555.1|WP_079405395.1|4259326_4260541_+|serine/threonine-protein-phosphatase
MVGLGRQGNGGGRAGRTGRAGRVGRAGGAGSGAARRVVRVLPAALIAFGIVFNLLTPPSFTGSPFFTAAPLIAAPLFTLRATAATGALAVLAVFVLQIIGGTGWKVEAMTELATVLTVSGLALLINRVVRRSGEQLASARGIAEAAQRAVLPEPAERIGGLHVSAWYEAAQADAFIGGDLYAVQETPFGVRLAVGDVRGKGLGAVEAVAVVLGAFREAADTEPTLEALAQRLERALTREGTRRDSLDAVEGFTTCVLGEIPPGASGLRLLNRGHPAPLLLHANGELAVLAPAEPALPLGMGELGGWPDLVQEWAFPAGTTLLLFTDGLTEARDGAGNFYDPAARLRGRVFPGPQALLSALSSDVRRHTGGGATDDMALLAVGRPGEREPERRLTVPVVPRDDAT
>NZ_CP020555.1|WP_081523032.1|4260841_4261858_+|M23-family-metallopeptidase
MASNLPAPEGTEIQEPPTAGAWGEWNPTEDSVRPVRGKHRVAKQRGGLARSSTVLGVGVIAAVGAGGIATAQDRPQVAISMPSLPDLVSGDKSQQDDGGSGAAARAAGERTGIMTQQSVHGADAGEVLRNRILQQAESQQDAAGAKARAEAEQAAQQAAAQEAKEKLEAARKAAEEAKAQAEAKAAEEAAEKAAAQKAEQERLAKPAGSYSLPTSAYTLTSHYGDSGSMWSSGHHTGLDFAAPTGTPAKAVSGGKITSAGWSGAYGYRIVLELPDGTEIWYCHLSSMSVTSGTVGAGETIGRVGATGNVTGPHLHLEVRKGGSTMDPLAWLNSKGLNV
>NZ_CP020555.1|WP_081523033.1|4261766_4263170_-|PrsW-family-intramembrane-metalloprotease
MFRALRPVRARPSGTIRTCVLLALLAATGIAILELVREQTGTSGFFVGLGLALLPVAPLMAAFRWLGRAAPAPWSQLLFCFGWGACTAALIAILANNFATEWIAAATADASAADHLGSVAIAPVVEESAKAAALLLVFAFRRRHFTGPADGFVVAGFTATGFAFTENILYLGNAFVEDLAEDSGALESVTAATFFVRIVLSPFAHPLFTVLTGLGFGVAAVSARRSRRIFLPLLGLALAMGMHALWNGSSQFGEHGFYVVYACVMVPAFGLLVWLAVRIRRDRLRAVARELSLYAAAGWLGPAEVPALASMPARSLARALARRSGGRAAGRTVARYEADAAALALLRNRARRGGPVRERDFAGRERELLHRLWQGRATAGPALARAAVMEELVPPWFDPLAPVGARADVPRPRRVAGAPPAPAAAPASAPAAAPDPGLRRSGPWSSATPAGPSSIRPCVLPGGDGVR
>NZ_CP020555.1|WP_030390750.1|4263213_4264026_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSESLNPQSPRLPDAAPEANSYVPPKWRTEPRFPDGPAPDPAGSHHERRIRSFQPRRSRVTTGQGEALKRLWGTWGLDIDGHEVIDLKALFDGLPVVLEIGFGMGEATAQMAADDPGTGILAADVHTPGQGNLLALAERGGMTNIRVANGDAIILLREMLPPDSLAGMRVYFPDPWPKARHHKRRLIQPEFLTLAATRLAPGAVLHCATDWEPYAEQMLEVLTAHPDFENTQPDGGFSPRPAFRPLTRFEGQGLDKGHLVHDLLFRRREN
>NZ_CP020555.1|WP_053177344.1|4264100_4265303_-|L-2-hydroxyglutarate-oxidase
MGGGVDCDVLVIGGGIVGLSTAHALSRLAPGTRVVVLEKESGPARHQTGRNSGVIHSGIYYRPGSLKARFAVSGAAEMVKFCAEHGIPHEVTGKLIVATEREELPRLHALVQRGRENGIPVRELGPAQITEYEPQVRGLAAIHVGSTGIVDYGRVTAQLAESSGAEIVYGGAVDLISRRASAVAVRTTSGLVVRARVLVNCAGLQCDRIARLAGDDPGMRIVPFRGEYYDLARPELVRGLVYPVPDPAFPFLGVHLTRGIGGGVHVGPNAVPALAREGYAWSTVRPRDIADELAWPGSWRMAARHWRYGTGEIHRSLSKQAFTRAVRRLLPAVTSADLHPAAAGVRAQAVLRDGTLVDDFLIRDAPRTVHVLNAPSPAATASLPIGREIATRALRTLGSA
>NZ_CP020555.1|WP_081523034.1|4265377_4267150_-|sporulation-protein
MSRELREPNEKLGAVLALAGISNAGLARRVNDLGAQRGLTLRYDKTSVARWVSKGMVPQGAAPHLIAAAIGAKLGRPVPLHEIGLADADPAPEVGLAFPRDVGAAVRSATDLYRLDLAGRRGGGGIWQSLAGSFSVAAYATPASRWLISPADSSVAREPAGSAAHRADRHPAHDSTAGTADTSATGASAAGTSAADEPAAQHSMVQSPVSATSSAHDAPAHEATAAGPRSVPDGRTTGPATGPMTGSMTGPATGSAASPAAGPASGPPSTVVPAQTGAETPRDHGQRVGHSDVTKLREAAEDARRWDSKYGGGDWRSSMVPECLRVDAAPLLLGSYTDEVGRALFGATAELTRLAGWMAFDTGQQEAAQRYYIQALRLARAAADVPLGGYVLASMSLQATYRDFPDEGVDLAQAAVERNRGLATARTMSFFRLVEARAHAKAGDSAAAGAALRAAEGWLERSRAGDPDPTWLGFYSYDRFAADAAECYRDLKLPRQVRRFTEQALSRPTEEYVRSHGLRLVVSAVAELESGNLDAACAAGTRAVEVAGRISSARTTEYVRDLLHRLEPYGDEPRVAELRERARPLLVAPA
>NZ_CP020555.1|WP_030390747.1|4267753_4269994_+|asparagine-synthase
MCPRAGEAAVRWLVGWSSIAASFGTAGRISGQGLGQGPGQGSGQGGYGDGGAPLRGGIADAAHPGDPGADAERTVHPVGAQLLWGDPDPLWAVGDWRPDEIRTLTADPADPFTRLAVLGCCGATDAELRRALYAARGGALRHLTQWSGSYTAVVQAGRRITVLGDLAGARPVFYTPWASGTAYATAALPLADLIEAQLDIGHLAALLACPDSPEALGDGTPYAGVRRIPPGHALILREGSREITGYEQVASLAVAAPEADAERAVEGVREALVDAVRARLTAPRHAPDAAPPYDPGPVPGMGPADRRAARGAPAPGVGADLSGGSASATLALLAAGLPGAPGTLLSPAGARLLAVTFNDLATPQGREAELERARAIAADPRLHHVVVAAAAEALPYAELDGPLTDEPGPSLVFAARERRRLAAGSADHFTGHGARQVLDAHPARMADLLLDRRRRHLLRPVAALARSASASGASGESLLVPLTVYSAARRLARTTYRAGMEAAAARLREGGVPERTTGPVDASLAALTWSRPGPAAGWLTGEALAEVSIRLTVAAGRPPLSLRPGEARARSLLARHAADHRVFEQAVEVRSQRLHAPFLDNQVVRAARALPESLRVQPGARAAILRSVLSSAGVREFPPGWGATDRTPNETATRLGLRAALGDLLDLFASPLLADAGLIEARVVRQALLDAADGRPVPLDGLAELVSMELWLRRLLARRGTCWTGTSTARRRAVPEGVPVHRPALS
>NZ_CP020555.1|WP_081523035.1|4270094_4271369_-|MFS-transporter
MTTTAANRAAPEAPTATAGSAAATPTAGSAARVGPVPVLWLALLATPMAAGANAPVLILPDMARALGVSASTAGWLVAAYAWAMAVATPLLAGLLRRRGLRTALRSAGALLVVGTLLVAASPWLPLTLAGRATQAAGGAGLAAVAMSLAGSARRMGVISAGFGILGACGPLLGAQLAQAVSWRLSLSVSVIAILAVPAVSRYAAAPTATPTPQDRFDARGAALLAALATGLVLLPHAAGAALGVAALAAALLTLHVRRRPDGFVPAALIRKPLFLGSALLALVLSGSYFTLLFSVPRLLADRAGWDVATAGTGQLVALLTGSALSWLLATASARMSRTAVRAVLLGAGALAAATAAFADRGPLLLAATMGGVFAATGANAVLSMHAASSAPDPQRPTAIGLFALCYQLGGAFGPALATALVLAA
>NZ_CP020555.1|WP_081525155.1|4271515_4272022_+|MarR-family-transcriptional-regulator
MSDAVDAIVGQWTAERPDLAAGLWPVEVMARIQRMNRVIDRHQKAFAAENDLELGELDILFTLCRSGPPYALTAGALIPAAMVTSGAITNRIDRMEAKGLVERIRDGQDRRTVRIRLTERSLALTESMITEHLRRYAEMLAPLDPATCASVAQALRTLLEAHGDTSIT

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Crispr_ID: NZ_CP020555_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_7

4599149-4599252

Orphan

Consensus_repeat	Method
GACAGCGAGCGCACCGCCGTGTTCCG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP020555_7

>merge|NZ_CP020555|7|4599149-4599252|CRISPRCasFinder
GACAGCGAGCGCACCGCCGTGTTCCGTGCGGTGAAGCCGCCGTCCGAGCCTGCTCCCGCTGCCGAGGCGAAGCCCGCCGACAGCGAGCGCACCGCCGTGTTCCG

>NZ_CP020555|7|6|4599149-4599252|CRISPRCasFinder
GACAGCGAGCGCACCGCCGTGTTCCG	TGCGGTGAAGCCGCCGTCCGAGCCTGCTCCCGCTGCCGAGGCGAAGCCCGCC
GACAGCGAGCGCACCGCCGTGTTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030386308.1\|4612884_4613613_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP020555.1\|WP_081523179.1\|4587525_4588608_+\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP020555.1\|WP_081523187.1\|4606516_4606912_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP020555.1\|WP_107475725.1\|4610623_4611358_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP020555.1\|WP_106977641.1\|4601433_4603158_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378373
NZ_CP020555.1\|WP_081523189.1\|4607993_4610567_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP020555.1\|WP_030390047.1\|4593995_4594232_+\|amphi-Trp-domain-containing-protein	unknown	unknown	gnl\|CDD\|275149
NZ_CP020555.1\|WP_081523182.1\|4594858_4595716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_107085022.1\|4603629_4604970_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236846
NZ_CP020555.1\|WP_081523186.1\|4604872_4605853_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|281995
NZ_CP020555.1\|WP_030390043.1\|4595960_4596170_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP020555.1\|WP_107475726.1\|4611550_4612870_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020555.1\|WP_081523183.1\|4596390_4597275_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP020555.1\|WP_081523188.1\|4607009_4607981_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP020555.1\|WP_081525174.1\|4594228_4594744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_030390041.1\|4597546_4598281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377552
NZ_CP020555.1\|WP_081523180.1\|4591294_4592077_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181159
NZ_CP020555.1\|WP_030390038.1\|4603243_4603474_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_053176833.1\|4588677_4591254_-\|bifunctional-FO-biosynthesis-protein-CofGH	unknown	unknown	gnl\|CDD\|236422
NZ_CP020555.1\|WP_081523181.1\|4592529_4593999_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|224513

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030386308.1\|4612884_4613613_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.47938e-76
NZ_CP020555.1\|WP_081523179.1\|4587525_4588608_+\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	3.92224e-79
NZ_CP020555.1\|WP_081523187.1\|4606516_4606912_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.533e-19
NZ_CP020555.1\|WP_030390047.1\|4593995_4594232_+\|amphi-Trp-domain-containing-protein	gnl\|CDD\|275149	TIGR04354, conserved_hypothetical_protein, amphi-Trp domain. This domain usually comprises most of the span of bacterial or archaeal proteins with a length of about 90 amino acids. Some members, however, are extended by one or two copies of domain pfam07411 in the C-terminal region. No residue in this domain is invariant. A striking feature of this domain is a C-terminal region that alternates strongly charged with strongly hydrophobic residues and usually ends with a Trp residue, e.g. LEIEIEW or FEIKVRW, suggesting an amphipathic beta strand structure. We suggest the name amphi-Trp for this domain. Some members of this function occur regularly in genomic contexts that include putative kinases of unknown specificity related to (but distinct from) HPr kinase, a Ser-specific protein kinase. The function is unknown.	3.66539e-10
NZ_CP020555.1\|WP_081523189.1\|4607993_4610567_-\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.28074e-27
NZ_CP020555.1\|WP_106977641.1\|4601433_4603158_+\|hypothetical-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00178756
NZ_CP020555.1\|WP_107475725.1\|4610623_4611358_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.92156e-106
NZ_CP020555.1\|WP_107085022.1\|4603629_4604970_+\|HAMP-domain-containing-protein	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	4.55411e-38
NZ_CP020555.1\|WP_081523186.1\|4604872_4605853_-\|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl\|CDD\|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	9.34161e-40
NZ_CP020555.1\|WP_030390043.1\|4595960_4596170_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	2.7948e-15
NZ_CP020555.1\|WP_107475726.1\|4611550_4612870_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.4909e-32
NZ_CP020555.1\|WP_081523183.1\|4596390_4597275_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.14129e-13
NZ_CP020555.1\|WP_081523188.1\|4607009_4607981_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.34502e-39
NZ_CP020555.1\|WP_030390041.1\|4597546_4598281_-\|hypothetical-protein	gnl\|CDD\|377552	pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34). This family consists of several eukaryotic GPP34 like proteins. GPP34 localizes to the Golgi complex and is conserved from yeast to humans. The cytosolic-ally exposed location of GPP34 predict a role for a novel coat protein in Golgi trafficking.	1.77711e-42
NZ_CP020555.1\|WP_081523180.1\|4591294_4592077_-\|SDR-family-oxidoreductase	gnl\|CDD\|181159	PRK07890, PRK07890, short chain dehydrogenase; Provisional.	1.41848e-124
NZ_CP020555.1\|WP_053176833.1\|4588677_4591254_-\|bifunctional-FO-biosynthesis-protein-CofGH	gnl\|CDD\|236422	PRK09234, fbiC, FO synthase; Reviewed.	0
NZ_CP020555.1\|WP_081523181.1\|4592529_4593999_+\|diacylglycerol-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.12306e-32

>NZ_CP020555.1|WP_030390041.1|4597546_4598281_-|hypothetical-protein
MGRSRRTIPEELLLLALDPATGTTAQPQSLDLGLAGAQLVELALAGRIAPDGDRIAVVMPRPTGDPTLDSALELLRRRGSPVRAVHWIGGPRLGLRQIYLAHLERCGMVHAVAGQMCGVLPTTRYQATDTEISREIRARLDSAIRTGVPPDPRTAALAALAHAVGLGKHLYPGNEGRSSRSRLRDLIRHDPMGGLVAHAVMDVQNGVAAQPRRDRAPAPPARATASSVPLQPRRTGAMARAAAH
>NZ_CP020555.1|WP_081523183.1|4596390_4597275_-|helix-turn-helix-domain-containing-protein
MASNVNPTVRRRRLGMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCDVYEVEDRRLIDSLMQMAKDSRQQGWWHAFGDIPYSVYIGLETDAASLRTYEPLVIPGLLQTTEYAQSLVRGAWPETAPADVDKRVQVRMHRQKRLSETENNNPDLGPLRLWAVIDEAALRRRVGDAPLMVRQLEYLIEQSEQPHVTVQVMPFELGAHPGVNGHYAILEFPDASDSTVVYIEGVTSDLYLEKANDVQKYSVMYEHLRAQALNVDQTRDFISGIINEYADKGA
>NZ_CP020555.1|WP_030390043.1|4595960_4596170_-|DUF397-domain-containing-protein
MAIRQGATTNWIKSSYSANGACVEVKSPVVEAIAVRDSKVQDGPSLTFAPGSWTSFVTDVTEGRLGRLA
>NZ_CP020555.1|WP_081523182.1|4594858_4595716_+|hypothetical-protein
MTTGEQDRQQDTRVDDYAELAAVGPYGVRPGHALITMVEPHPGHEYAYNRWYEDDHYYAGAMAMPWMYAGRRWVATRALQELRYPEKSAVAQPVTAGCYISTYWVTEGRYDEHMKWTVGINKRLNRDGRVYQDRTHVFTSFQDHVATVYRDGAAGPRDHHALDHPYEGLVVQVVDADGREQRAELLEWLRSRALPKRLHGGPAAMVTVFRPTPLPGDRMTYVKQVEGVDTRLTLLWFLQEDPRTCWDRFRGLDEEVAQAGLGRVELVAPFIPTVPGTDRYVDQLR
>NZ_CP020555.1|WP_081525174.1|4594228_4594744_+|hypothetical-protein
MSRGRVTVSAGAPARRERHGDYTGAVYGSLLAASVVVGAGTLGPYPRLQLVVLLLSTGVVFWAAHVFSRLFGARMVNRLSWAVIRSEAREERPIIEAAVPPAIAAAISPWFGLGPQGVAWLALLVALVGQVGWATLAASRAGASRRLMLMAGAINLFLGLLIVLLKVGLQH
>NZ_CP020555.1|WP_030390047.1|4593995_4594232_+|amphi-Trp-domain-containing-protein
MKDLKFEQKRSLSRLEAADQLSALAEALRHGGNAELELGPGKMSLRVPDELRTEIEVEVGDGEIEMEIELKWPTASTG
>NZ_CP020555.1|WP_081523181.1|4592529_4593999_+|diacylglycerol-kinase
MSLPDPSGPPRRARWWALLAVVCAVCAALTLVGEGIVGGLLVLAFGVAGAALTAMGTWWVVSHRGAVRLWGTLLVVGAPVAILFIYARADLWPTALVAIALWAAAVACARTALRSARRSHGMRAAARAAPRYPVLIMNPKSGGGKVGRFGLVEKGEALGARVVLLDPEVVTDVAALARRAVAEGADLLGVAGGDGTQALVAEVAAEHDLPFLVISAGTRNHFAMDLGLDREDPARCLDALVDGEELRVDLGSVGGHAFVNTASFGVYAEIVQRPEYRDAKADSALAALPDLLLGYAGTTLDAATDGTRLEAQQALLISNNPYSSPEPMGARRSRLDLGVLGVVGIRVNNAAQAADVALRGARAAGLHILTSRQVVVGSAAERIAVAVDGEALTLPTPVTCSVRPGALRVRVPRLRPGAPPVAPPMQWSEVLALAFKRRPEPEPGPGTGPEPGPGPGPESGPAGAARDARPPVRRHNEAYPVFVADWRHP
>NZ_CP020555.1|WP_081523180.1|4591294_4592077_-|SDR-family-oxidoreductase
MLLQGKTVIVSGVGAGLGHQVAAAVVRDGGNAVLGARTEANLAKSAAEIDPDGAHTAYRATDIGDERQCEALAELALTRFGRIDAVVHVAAWDSYFGGLEDADFGTWQQIIDVNLLGTLRMTRACLPGLKERGGAVVIIGTQSAVAAPNEVQQAAYAASKGALTSAMYSMARELGPHRIRVNTVLPGWMWGPPVQAFVTFTAHTEGIPEAEVHARLTRRMALPDLATDGDVADSAAFLASDRARAITGQSLLVNAGELMR
>NZ_CP020555.1|WP_053176833.1|4588677_4591254_-|bifunctional-FO-biosynthesis-protein-CofGH
MTTPSDAPTENAMRRALRRARDGVALDATEAAVLLQARGEDLKDLAASAARVRDAGLAAAGRPGVITYSRKVFIPLTRLCRDRCHYCTFVTVPGKLRASGHGMYLSPDEVLDIARQGAAMGCKEALFTLGDRPEDRWPEAREWLDAHGYDDTLAYVRAMAIRVLEETGLLPHLNPGVMSWSDLQRLKPVAPSMGMMLETTATRLWSEPGGPHHGSPDKDPALRLRVLEDAGRSNVPFTTGVLIGIGESYGERAEAFFELRRIQRSYHGIQEVIVQNFRAKPDTAMRGMPDAELEELAAAIAVARHILGPGARIQAPPNLVDAEYALLIGAGIDDWGGVSPLTPDHVNPERPWPHIEELAERTAAAGFELRERLTIYPEFLQRGEPWLDPRLLPHVRALADPQTGLADEGAPVEGRPWQEPDEGFAAYGRTDLHATIDTEGRTGDRRDDFDDVYGDWEALREAAAPGMVAERIDTDVRGALAQAADDPTKLTDAQALALLHADGPALDALCRIADDLRRSVVGDEVTYIVTRNINFTNVCYTGCRFCAFAQRRTDADAYTLSLDQVADRAAQAWDVGAVEVCMQGGIHPDLPGTAYFDIARAVKQRVPGMHVHAFSPMEVVNGATRTGMSVRDWLTAAKEAGLDSIPGTAAEILDDEVRWVLTKGKLPTADWIDVITTAHELGIRSSSTMMYGHVDQPRHWLGHFRTLSRIQQQTGGFTEFVTLPFIHTNAPVYLAGIARPGPTVRDNRAVTAMARILLHPHIPNIQTSWVKLGADGAAEMLRSGANDLGGTLMEETISRMAGSSYGSYKSVRDLIAVAGAAGRPAKARTTLYGEVPQERQEAARASDGHLPELLPVLD
>NZ_CP020555.1|WP_081523179.1|4587525_4588608_+|tyrosine-protein-phosphatase
MKKALLAATVVASALTASLVAAPLASASGRDGSDGRDGRDRSAVPFTEATVTAGADGSFTLRWKARGTDRVEIRANGKVVAKGGAQGRAVVTGLPAADRQWFDFTPQRGQGLRLADRLIRLDGTANFRDAGGYRTSTGQWVRMGEVYRSDALDKLTENDLAKLQRLRIKTVFDLRMEDERTKDADKVPAGATYVVADVFAGSGSFRAMPRTPDEAVKAMVDAERAMVSGAGGKKAYTQVFEGIERDRSRSVLFHCTAGKDRTGWANAALLTALGVPRATVEADYLASNDYRKAANDAILAHLPAQQAAVYKPMLDVRPEYLNAGYDEVKATYGSFDRYLEDGLGIDSRELKQLKKDLLVG
>NZ_CP020555.1|WP_106977641.1|4601433_4603158_+|hypothetical-protein
MLAGLLHVAWFFSFANSGGDLAAQDAWAEFVGRHPDSAYNLAWYGGMHPVSYSVVSPYLMHMLGVRTTMMIAGTVSAGLLALILTRCRGAVREPLWPALAGVYGLLCNALSGRVTFGLGVMFALGAVAAVFCWPRKWAERRWAKAAVAAPLAGLATAASPVAGLFLGVIAAALFLSGRRPGAYALGLAPVAVVGLSAWLFPFSGTQPMKIGSAGLPFVFALLILFLVPRRWRTVRIASAVYALGVFLTWAIDSQVGSNVTRMVMLFGGAVLLAALAYEVPRTRRWYGVLLALVGLNAWITANSITDIVRTTPLAAWSRELAPLVDQLQKAGADRGRVEVVPASSHRESSAFPSYVNLARGWNRQADLERNPLFYDDTLTADSYRAWLERWAVHYVVLPADKPDSGGEDEAKLVRAGVPYLQQVWGDANWQLFKVLDPTDLVSGPATVVRASADRLVVDVKQPGRVLVRIPHSPWLGLVDAAGKPVPPPQETFASKARGDSGDGGALRRQYANTAGCLFKAAPDDTGDVWTELLAPAPGEYRVAAKYQLPRGTPCPEDLVHQTLGQPNRPAPPRP
>NZ_CP020555.1|WP_030390038.1|4603243_4603474_+|hypothetical-protein
MLPEGVDDGMNKEQKRDVRAALAKAQEQAQPPRSAGHGFDGPVRSKVKGGMHTKAALKRAGTPQGDRIGERTSGLS
>NZ_CP020555.1|WP_107085022.1|4603629_4604970_+|HAMP-domain-containing-protein
MQRGERLRPRRRLLPAWTSTLTWKATVFITLMCCGLAALLGCLVHGAMTRQTVGTAREKALTRLERTIEAYEAGARMPRGEGVDPPGLPPELRALALGGKRGTAVGRHRGRPVMWAAGPAAQGTAIAVSVDFRASERTIDELDRAILGSSGLAIGGTLLIGAFVVTRITRRLHLTAQVARRISAGDLDARVADSTRSKDEVAAVSRALDTMAASLQGKLEAEQRFTADVAHELRTPLTGLNAAAELLPPGRPAELVRDRVRAMRSLTEDLLEISRLETRSERVELDSHDLADLASRTIRASGTDTALEVRGSRGSLRVDTDHRRLERILGNLVANAHRHGAPPVALTVDGRTLTVTDSGPGYPEYLLTTGPQRFRTEGTGKGHGLGLTIAAGQARILGATLTFRNREAGGAEARVTLPGPAAPGATAPPHRRDAPPAPGSSAPPAR
>NZ_CP020555.1|WP_081523186.1|4604872_4605853_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MWAGRLLGRHLSLKDRAHGHVRHRLRVISLGCFAAVARTHTVRNPHSVSSFNHTVIEEFRANAGHVGGPFAGSELILLTTTGARSGKPHTVPLGFVREDGRLLVVASAAGADRHPAWYHNLLARPLVQVETGAEEYEAVAVPAEGARRDELFAHVVRAEPGYGEYQERTRRVLPVVELRRTHEVPSGEGGIAGKLLDVHGWLRAQLALVRDLAREEPQGGGGRASLGLQLRQHCLAFCHSLEFHHRSEDAGLFPYLEQQHPHMGEFFRRIGAEHAAIARLQDELVRALDAPGTGFSERVERMSRELEAHLDGEEAQLLPVLRALGA
>NZ_CP020555.1|WP_081523187.1|4606516_4606912_-|RidA-family-protein
MERTAVNPVKWSVELGFNQGELVSGDTRTLYVSGQTAMGPDGTPRHEGNMAAQLALSIDNLEAVLGEADMSLANLVRLNVYTTDVDLLFRHYGDLAARLGAARVAPATTMLGVTRLAIPGQLVELEATAVA
>NZ_CP020555.1|WP_081523188.1|4607009_4607981_+|WYL-domain-containing-protein
MRADRLVSLVLLLRRHGRLTADTLARELGVSTRTVLRDIDALSTAGVPVYAERGRHGGFALMPGFRTELTGLNHDEALALLAAGPVRGEQVFGLGPALASALRKVVDALPESHRATASDAAGRFLVDPETDLLARRTATDEVPGAAMSEIRRAVLAGHRLRIHYAAADRAPQWRTVDPIGLVTVRDRGYLLATRDGADRTYRLSRVLAAEELPEPAQRPGRVDLDRIWRERSARFLGEDHITVLVRVDPARREDLLDTAVAVRAEEADGDGRLRLELTFQDARHAEWALWQLGADAEAVAPRSLRTALRRRAAAMAALYEDPP
>NZ_CP020555.1|WP_081523189.1|4607993_4610567_-|FtsX-like-permease-family-protein
MLKTALRNVLAHKARLLMTVLAVTLGVAFVCGTLVFADSSTAAHRAAVSKNYADIAVSVTPKDLPPGAAGSPAAAPDEHATVLDDALARTLAALPGVAAVRPSADGLATLNASDGSPLRTGRIWAHRAAAYVPGPDGKDGRHPLTEGRAPRTGDEVAVDSGTAADGGFHIGDRITLATDGPTMTKRLVGIVTTADTRVTAGGTLTLFDRATAQQLFASPGRYTSIDLSAVPGTDAAELSRRVAAVLPADRAEATTGSALAAQQSVFVDTITRGNEKLSLVFAGVALFIGSFLIVNTFTMLVARRTREIALLRAIGATRRQVVRSLLWEAALLGLFASALGFVLGLGIASALPELLSTTQEELPRGPLVIGPLPVVAALAVGVGVTVLAAWLPSRRAARIAPVEAMRTAGQPPTATASRVRGAAGGLLLVLGAGLLLSLSGAKDASEGNLQSAMFGCALLVVAVIVLAPLLAVPVIGLSGRLTGLLGIAGRLAHRNALRDPRRTAATASALMVSTALVAGLAVIGHSTGRALDRQAAAGLSADYVISTHTSTTGIDPAAVQRVAETPGVRTATAVSDSTLFIGGGVRQISGVDPAAAASVMKLDFVSGSLKDLGPGRIALSRTLARESGVSTGGYVNARTGGPGQDLTPYTVVGVYEDNPTARDALGVRAEVGRSGFDPGSVQRVLVRADSAATKDRLRTATGNNPLLEVQDRDELVQEAAGSLSTLLTLTYGLLALGGVIAVLGIMNTLAMSVSDRTREIGVLRSIGMDRAGIRRMIRLESLTVAAFGTLLGLAAGLFGAWTVGALTNGALKDYSLALPWDTLLLLLLVSLTTGTVAAALPARHAAALSPLEAVAEQ
>NZ_CP020555.1|WP_107475725.1|4610623_4611358_-|ABC-transporter-ATP-binding-protein
MAASTTDLSKVYGSGDTRVVALERVSVSFREAEFTAIMGPSGCGKSTLMHCAAGLDSVSSGSVRIGTTELGGLGDRQLTELRRDRVGFIFQAFNLLPTLTALENITLPLSIAGRRPDRQWLERVVSMVGLSERLDHRPGQLSGGQQQRVAVARALVTRPAIVFGDEPTGNLDSRAGAEVLGFLRDSVRELGQTVVMVTHDPVAAGFADRVVFLSDGRLVDEMVRPTPDRVLDRMKQFDTRARTS
>NZ_CP020555.1|WP_107475726.1|4611550_4612870_-|HAMP-domain-containing-histidine-kinase
MPRPWWPARVPLRWKIAALAAATACLVALTVGVLVHLWTAGDIRDRAEMEATNSVYSAMDVYRRTGTLAGGAELDPAELPAVLRHPSDGDRRVAYDGHVEGNLGPSVWGAQRVDGPGSPMLAVRINMSPQLHDLRRLDASMAVASLVSLAAALPLAVYGAGLVARRLRRVAETAARISGGDLDARTGARTDGGEDHARGRDEVTDIAATVDLMADSLGRRLRIERQFTADVAHELRTPVGGLLAAADLLPPGETEDLLRARVRDLRGLVEDLLEISRLDAGAEAPVPARVPLAAVVREAVARTGLNTEVETGERGGPGESEGSGDFGGSGESGDPVETDPRRLERIVGNLVVNAHRHGRTPVRVTVAGRTVVVRDHGPGFPADLLLDGPRRFRTGATERGTGHGLGLTIALGQARVLGAELRLDNAPDGGAVATLRLPL
>NZ_CP020555.1|WP_030386308.1|4612884_4613613_-|response-regulator-transcription-factor
MSSSAPAPESQPPVRVLLVEDDDLMRRSFAVALERYGYRVTAAADGLTGLEHFRDDEGFDLLILDVMLPGLDGIGLCRRVRESSLVPVLMMSARGDGLDVVAGLEAGADDYVVKPVETNVLVARIRSLLRRASYAPAAGGESAAGREDGVLVFGDLTVDTAGMEVSVCGSPVALTPTELKLLLEFAAHPGIVLERHTLLRNVWEYGWDGDSRVVDLAVQRLRRKLGRERIETVRGFGYKLRR

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Crispr_ID: NZ_CP020555_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_8

5172581-5172648

Orphan

Consensus_repeat	Method
GGGGTGGGGCGCGGCGGTGCGCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_8

>merge|NZ_CP020555|8|5172581-5172648|CRISPRCasFinder
GGGGTGGGGCGCGGCGGTGCGCGGGGTGGGGCGTGGGGCGTGAGGGGTGCGCGGGGTGGGGCGCGGCG

>NZ_CP020555|8|7|5172581-5172648|CRISPRCasFinder
GGGGTGGGGCGCGGCGGTGCGCGGGG	TGGGGCGTGGGGCGTG
AGGGGTGCGCGGGGTGGGGCGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_081523533.1\|5164371_5165460_-\|glutamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270408
NZ_CP020555.1\|WP_081523531.1\|5160080_5162963_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|319004
NZ_CP020555.1\|WP_081523538.1\|5176144_5179192_-\|hyaluronidase	unknown	unknown	gnl\|CDD\|369423
NZ_CP020555.1\|WP_081523541.1\|5182365_5183298_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP020555.1\|WP_081523536.1\|5169331_5170237_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP020555.1\|WP_030384728.1\|5171188_5172532_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP020555.1\|WP_053177824.1\|5170233_5171184_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP020555.1\|WP_081523532.1\|5162959_5164249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235175
NZ_CP020555.1\|WP_107475568.1\|5165465_5166758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081523539.1\|5179336_5181364_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|376788
NZ_CP020555.1\|WP_053704082.1\|5167080_5168070_-\|ATPase	unknown	unknown	gnl\|CDD\|225518
NZ_CP020555.1\|WP_030011969.1\|5175467_5176004_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP020555.1\|WP_051778989.1\|5183348_5184269_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP020555.1\|WP_030384723.1\|5181384_5181624_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081523535.1\|5168060_5169326_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP020555.1\|WP_053704126.1\|5174098_5175160_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP020555.1\|WP_107475567.1\|5158493_5160080_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223704
NZ_CP020555.1\|WP_081523540.1\|5181733_5182225_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP020555.1\|WP_081523542.1\|5184279_5185182_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
NZ_CP020555.1\|WP_081523537.1\|5172687_5173953_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_081523533.1\|5164371_5165460_-\|glutamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0312e-83
NZ_CP020555.1\|WP_081523531.1\|5160080_5162963_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|319004	pfam16918, PknG_TPR, Protein kinase G tetratricopeptide repeat. This domain is found at the C-terminus of protein kinase G and contains a tetratricopeptide repeat (TPR).	3.33422e-88
NZ_CP020555.1\|WP_081523538.1\|5176144_5179192_-\|hyaluronidase	gnl\|CDD\|369423	pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.	7.3145e-128
NZ_CP020555.1\|WP_081523541.1\|5182365_5183298_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.66608e-44
NZ_CP020555.1\|WP_081523536.1\|5169331_5170237_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.0463e-86
NZ_CP020555.1\|WP_030384728.1\|5171188_5172532_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.0945e-74
NZ_CP020555.1\|WP_053177824.1\|5170233_5171184_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.90563e-72
NZ_CP020555.1\|WP_081523532.1\|5162959_5164249_-\|hypothetical-protein	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	0.000398578
NZ_CP020555.1\|WP_081523539.1\|5179336_5181364_+\|4-alpha-glucanotransferase	gnl\|CDD\|376788	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.	7.4128e-150
NZ_CP020555.1\|WP_053704082.1\|5167080_5168070_-\|ATPase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	2.11772e-20
NZ_CP020555.1\|WP_030011969.1\|5175467_5176004_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	9.7281e-24
NZ_CP020555.1\|WP_051778989.1\|5183348_5184269_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.99908e-19
NZ_CP020555.1\|WP_081523535.1\|5168060_5169326_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP020555.1\|WP_053704126.1\|5174098_5175160_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.97385e-41
NZ_CP020555.1\|WP_107475567.1\|5158493_5160080_-\|hypothetical-protein	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.44262e-38
NZ_CP020555.1\|WP_081523540.1\|5181733_5182225_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.8627e-19
NZ_CP020555.1\|WP_081523542.1\|5184279_5185182_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.79083e-50
NZ_CP020555.1\|WP_081523537.1\|5172687_5173953_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.85243e-37

>NZ_CP020555.1|WP_030384728.1|5171188_5172532_-|ABC-transporter-substrate-binding-protein
MPRTGRTARLTTATALLAAISALATACTGQSADTASDDPKADVTLNFWHGWSAPSEAKAIEDNIARFEKAHPNIKVKVTGNMTDDKINQALRAGGDKAPDVVSSFTTDSVGKFCNSRAFADLNPFLEKSGVDKTKVFPKTLLEYTEFNGNQCTLPLLNDAYGLVYNKTAFAAAGITEPPKTWSQFVEVAQKLTRPKGDSYEQVGLMPTFHGYETTPMRLAAQWSPTYFGADGSSNLAADPAFAKMLTAQKDLVEKLGGYEKLERFRNTFGDEWGAEHPFHTGQVAMQIDGEWRAPMAKEAGVTFEIGTAPLPVPDEQAADYGKGYLSGTIMGIAAGSAKQNAAWELVKYMTTDTEAVVAFANAIHNVPSTLAALESPDLRVTPEFKTFLDIARHPKSSTTPAKADGGTYQLTFQDFAYAVEKGDVTDIPAGLARTDQQIDTDIAKAK
>NZ_CP020555.1|WP_053177824.1|5170233_5171184_-|sugar-ABC-transporter-permease
MPGTGTRPLRSKQRRSALRTAAFMSPWLIGFSVFFVYPLLSTLYFSFTQYDGFRQPSFNGVDNWSYVFSDYPLFWPAMRNTLWLVLVMVTCRVAFGLGIGLLITKIKTATGVFRTLFYLPYLAPPVAATLAFVFLLNPGTGPVNTLLDAVGLPTPGWFTDADWSKPALTALALWGVGDLMVIFMAALLDVPKEQYEAAELDGAGAWARFRHITLPNISPIIMFAVVTGVIQAMQYYAQPLVAGKVAAGVIGGSGQQFEPGYPDKSTLTLPQLVYNLGFQRFDYGTACVVALVLFALSMAFTALLMRRRGGLIGAGG
>NZ_CP020555.1|WP_081523536.1|5169331_5170237_-|carbohydrate-ABC-transporter-permease
MSTRTHDGGSRSSSSSSSEESGSGRRSSRAVLHWVGVHSLGVAAALFFVLPFVFLLLTSLMGDRQALTRDLWPHTWEWGNYAKVWHTPGFLTWWRNTLLYAGVGTLLTVVSSVPVAYALAKFRFRGRRLSLLLVIAMMMLPPQVVVIPMYLFWAKQLDLSGTLWPLIIPMAFGDAFSIFLLRQFLLTIPDEYLDAARVDGCGEVRTLLRVVLPMARPGIAAVALFQFFSAWNDYFGPQIYASDNPAAWTLSYGLESFKGAHHTNWNLTMAATVLVMAPVIVLFFFAQKAFVEGVTLTGVKG
>NZ_CP020555.1|WP_081523535.1|5168060_5169326_-|6-phospho-beta-glucosidase
MKLAVVGGGSTYTPELIDGFARLRDTLPVSELVLIDPAADRLELIGGLARRIFARQGHPGRVTTTSDLDAGIAGADAVLLQLRIGGQAARLQDETWPLECGCVGQETTGAGGLAKALRTVPVVLDIAERVRRTNPDAWIIDFTNPVGIVTRALLRAGHKAVGLCNVAIGLQRKFAALLDLAPADIHLDHVGLNHLTWELGVRRGGPDGEDLLATLLAEHGDAVAGDLRLPRAVLDRLGVVPSYYLRYYYAHDEVVRELGTKPSRAAEVAAMERELLALYGDPSLDEKPALLAKRGGAFYSEAAVDLAASLLGDGGPAVQVVNTYNNGTLPFLPDDAVIEVQARVDGSGAAPLPVPRLDPLFAGLIAHVSAYEDLALDAALRGGRERVFKALLAHPLVGQFERAEGLTDRLLAHNKEHLPWA
>NZ_CP020555.1|WP_053704082.1|5167080_5168070_-|ATPase
MGVTLPSVLAIDAGNSKTDVALLAPDGSVLCAGRAGGFQPPRTGVAAAVDVLAEAMADAGLRADRAAGPWAERVSACLANADFAVEEAELAREIEGRNWGRATAVHNDTFALLRSGLPTGADPCGVAVVCGAGINCVGMTPDGRTARFPAVGRISGDWGGGGGLAEEALWFAARAEDGRGGPTELARALPAHLGHDSMASLIEAMHLGRVPHGRRHELAPVLFAVAAAGDPVALSLVHRQADEVVAMAAVALERLGLLEQEVPVVLGGSVLAAGHAQLDDRIATGLARRAPHARISVITAPPVLGAALLGLDALAAPHGAYEKLRAHFG
>NZ_CP020555.1|WP_107475568.1|5165465_5166758_-|hypothetical-protein
MERLREAATTEPGRLRIIGAVLAALIVLFGTVSVWEISDRASAADDVVGRSQPLSADAASIYRSLADADTASSSGFLLGAQEPREVRQRYEKDIANASRLLVSAAANTGGNEDSRKQITLLSEQLPRYTGLIEQARATNRQGLPLGGAYLRYANEQMTTQLLPAAQRLYESETKRLHTDHDDARSWPLASIGLGLVAVAALVWAQRRNYRHTNRVLNHGLVAATAAAVVVLLWLAVGHTVARSSLNEARVDGQESMKVLNDARIASLQARAGENLTLIARGAVLAEDKKSDKYDVDFTNNMKQLDAGLATALRLADDEAGRSPVSRAADGVKQWKQRHTAAREADLKGDYEAALPQVVGDDQHKESSGAAFDTVDASLEQAVAHEQREFTRAAGDGLGALSGLVTGSAALVVIGAAAALLGIGRRLSEYR
>NZ_CP020555.1|WP_081523533.1|5164371_5165460_-|glutamate-ABC-transporter-substrate-binding-protein
MRIRTGRAAEGHENHGSPEGPEAAPVAASGVRRAARRLRGWGGVSAMAVACATTAAVVLLPLAHATPDTGRPAVRRPAAMAAAPAAPWVLTDTCQDPEASLRPAEVDGAAIARIKAAGKLVAGVDQNSFRWGYRNQTADGSRLDGFDIDLVKAIAKDILGDENAVIYRAIPTSQRIPALQEGRVDIVVRTMTINCKRLEDVAFSTAYFEAGQQVLAPKGSPITGYDTSLKDRRICVAAGSTAEAALKAQSYGSAPVTVANQLDCLVRLQLGEVDGIITDNALAAGQAAQDPSVQLVGSPFTREFYGVAMNKDASDLVRRVNKVLENYRAGGGESPWMKAYLKHLQPVLPGVTAPPAPKYRDG
>NZ_CP020555.1|WP_081523532.1|5162959_5164249_-|hypothetical-protein
MDRDDVDRALARLGAEHEAVETSLLALQDHAGRRLLEGASLTGITKDRWTAADADITRLWTYFDAYSGALTAAREVRERRRWPGREDLIELTERLRGPGVLIAGAAAEGVALAERLSLAELVARMNGLYARSLDVVVAADAVWSALPARIDLLAAELHRTRSLAHSVGVRPGEHPSGDDLEDITAELAELRTQVIADPLAFWLPAAGSSAPGGGRPDTGRYDRAALALEDVRREVEAVLDVRQDAEQRLIALRDVLSRADRTLAEARTARGEVLAKIAASEVPAVSGPPTVLQEQLAAAAEHRRQARWHRLSPLLESLEERAEEELRRARESLTAVTAPLAVRAELRGRLDAYKAKVARHGLAEDPLLIERYDAARRMLWSAPCDLRAAEQAVLRYQQATAEALAAPQDRPEQPRHQEQRPDGPGEEDA
>NZ_CP020555.1|WP_081523531.1|5160080_5162963_-|tetratricopeptide-repeat-protein
MSLIGTACVRPGCPGAYEDMGGGEVYCDTCGLAPIGSIAAGADELVSPPTGMTSAARGSLGSGGSRGSMGSQGSHGSARSSASARSSRSSSSRRSVSGRLSRSVSGTTSTRSVSVRSSGSAASGRSRLGAGLVNVPEVPRPNPSTAVLENPEVPERKRFCSRSDCGAPVGRSRGDRPGRTEGFCTKCGHPYSFVPKLRSGDVVRGQYEVAGCLAHGGLGWVYLAVDRAVADRWVVLKGLLDTGDQDAMEAAISERRFLAEIEHSNIVRIYNFVEHLDQRTGSLDGYIVMEYVGGKSLKEIANERRRPDGRRDPLPVEQACAYGIEALEALGHLHSRNLLYCDFKVDNAIQQQDQLKLIDMGAVRRMDDEESAIYGTVGYQAPEVAELGPSVASDLYTVARTLAVLTFDFQGYTNVFVDSLPDPEHIEVFRRYESFYRLLVRATDPDPGRRFASAQEMADQLTGVLREVVALQTGRPRPQLSTLFGPELRVPDTRLFADADDTVVSRLGHRPIAPRRGGLFGLLGRGPGPTGAHAGAHGTGGAAARPAAATATATAAAAAAGVAQAPAAGPAPAAAPWGPGTALPSGAPGGAPLPALASTATHVTGAPVPGPRRTPPAPGTAPATPSPLAAGAGVAGAWAAGAGAALAPVAPPPLAGASARDTALALPVPLVDAGDPNAGFLTGLLASAPGDLLGALSAAPADSAELRLRELRARLELGELAEAGHTLADLEARHPDDWRVVWARGIASLATGDDEIAALSFDAIYDAFPGEPAPKLALGLCAEVLGQLDNAAEYYRLVWITDPGFVSAAFGLARVQLAAGDRDAAVRTLESVPEASIHYTAARVAAVRARLRDRSPQEPLLADLSAAADQVEALRRFGLDPERQERLATEVLGSALDWVLSGSRGSDPGRTSLLGSQLDERGLRFGLERSYRVLARLARRGEERIELVERANRFRPRTWV
>NZ_CP020555.1|WP_107475567.1|5158493_5160080_-|hypothetical-protein
MMSMHRLSGCPSCAEPLEEGDRFCGVCGYAVSAPAAASAVDNPTIPIPPAPPAPPAPAAPPVPAPAPAAAGGYGTPAPGVPHAAAGPAPGWGSAASAAPTLVDEPAAWAATPAEPETEPEAEPRQGPAGVTHASSGHGNPYGTGTPPEGTPWGPAETPYAPAAAAAAEASADGADGPETRHDRPEGHPGTPSEGTPWGTGEAPYETPYENPPQPGAAAGGKTCVACRAGHVDTDGYCEHCGHAQPRERDHLEEELGSVAAVSDRGLRHHRNEDSFAVAATALPDGSAATVAIVCDGVSSASRPDEASAAAAGAANEALLEALPRGAHPQEAMHEAILAAATAVNALAPETPGAQNAPACTLVGAVVSGGLLTIGWVGDSRAYWVPDDRAALPRRLTEDDSWAAQMVAAGLMGEAEAYADVRAHAITGWLGADAYDLDPHTATFKPDHPGVVVVCTDGLWNYAESAREMAQVLPADAATRPLHSAQVLVGHALDGGGHDNVTVAIVPFAMHPEQEPGPDAEPGPAAGPE
>NZ_CP020555.1|WP_081523537.1|5172687_5173953_-|ROK-family-transcriptional-regulator
MPAATPGTPSLLRAMNDRAALELLLTHGPLSRTRIGHLTGLSKPTASQLLARLEAVGLVVATGTDGGRPGPSAQLYAINPRAAYVGGLDVTPERVLAAVADITGTVVATHELPYTEGAEAVGQVTEALGEAVKAAGLHRSDLRRVVIATPGAFDPQTGRLRYASHLPGWHSPTLLEDLAAALPMPVEYENDVNLAAVAEQRLGAARGHEDFVLLWNEEGLGAALVLGGRLHRGWTGGAGEVGFLPVPGRPLVRQVTRANSGGYQELAGVEGLPRLAAELGVEPPAASASPDGADAADAPGAPAGSGTPHGPEVAAAVALLTRAADAPEGASLRFLQSYATALATGLASVVAVLDPEIVVLSGAAISAGGEPLRALLEAELAELAPSRPRLVPGEVREHPVLHGALESALAATRDEVFDTSG
>NZ_CP020555.1|WP_053704126.1|5174098_5175160_-|mechanosensitive-ion-channel-family-protein
MPQAAEVPDAPASVKEAQASVNEAASFIEQNWATWLSIGLRILLIVVIAAVIRSAVRKALTKLINRMNSSAEAVEGTALGGLLVNAERRRQRSEAIGSVLRSVASFLILGTAALMVLAALKIDLAPLLASAGVAGVAIGFGARNLVTDFLSGVFMIMEDQYGVGDKIDAGVASGEVIEVGLRVTKLRGDNGEIWYVRNGEIKRIGNLSQGWATAGVDVQVKPSESLSRIREVVKEVADSMAKESPWDERLWGPVEVLGLDEVLLASMTVRVSAKTMPGQQFAVERELRWRIKEAFDAAGIRIIGGMPAADEDEEAPVDPSASVAAPSALSNPASPQSLATTPIPPPAGPRITK
>NZ_CP020555.1|WP_030011969.1|5175467_5176004_+|HNH-endonuclease
MPHVLVLNASYEPLGVVPLRRALVLVLENKAVSLEESGAYLHSATRVVPAPSVVRLKRFVRVPYRGPVPLTRRALFARDGGRCMYCGAVATSVDHVIPRSRGGQHAWDNVVAACRRCNHVKADRHLLELGWRLRHQPAPPSGLAWRIIGTGHRDPRWMPYLQPYGAEDALERIGVAAG
>NZ_CP020555.1|WP_081523538.1|5176144_5179192_-|hyaluronidase
MVGSSSFVRVGDVSRRGGSVQLRGRRRNTAVAAAVIGTLLGGAVASAPPGSLAAPSAPTGPGRVPASGIALGGPALDPGADTPRAATEGPAVWPRPQSMTADPARELPLGAEAVLVAPADADPYAVQVVRDSLRAAGVRTVHEQAPGTPLPARGTVVRLQEPGAEEALRALGATAPSDLPPGGYRLAVGRHAGRDTIALSGVGEDGLFHAAQTLRQVLAAGGGKAPGVLVRDWPAAPVRGITEGFYGQPWTREQRLAQVDFMGRTKQNRLLLAPGDDPYRTTAWRQDYPQEQQQEFRALAERARANRIVLAWAVTPGQSMCLSSEADRAALTRKLDAMWDLGFRAFQVQFQDVSYTEWGCRADRDRYGKGPASAAKAHAEVAGRLAAHLAARYPGAPALSLLPTEYYQEGATAYRTALAGALDPRVEVAWTGVGVVPQTITGKDLAGARSALGHPLITMDNYPVNDWDPGRIFLGPYTGRDPAVVGGSAALLANAMPQGTLSRIPLFTAADFSWNPRGYRAGESWAAAVRDLAGSDPRTREAVAALAGNTASSGLGQEESAYLKPLVEQFWRARAAGDPAAGTALRRAFAVLREAPGRLPALSGEAGPWLERLARYGTAAELAVDVLQAQARGDGAAAWEASRALTEAREALKEQGTAQVDKAVLEPFLAKAASEADAWTGVTRRTGTVTKEAEAWTVRLEAPRPVSAVTVMTEPLPAGARGAVVEAHVPGEGWRKVADAAAAGWTQVDTAGLRADAVRLSWAGAESAPAVHQVVPWFADGPRARFELADRAAVDAEIGGTPQRVSAQLSALGPGEVRGPLSARPPAGIEVRLPQSAVVPRGGQASIPLEVKVAPGTAPGSYRVPVTFDGESRTLTVRAVARTGGPDLLRTARATSSANETADFPAPAAVDGSAGTRWSSPAVDGAWWQAELRAPARVGRVELHWQDAYPSAYRVETSADGVTWRPGAAVSASRGGRESLRLDAPDTRFLRITCETRATRYGCSLWSAEAYAVTP
>NZ_CP020555.1|WP_081523539.1|5179336_5181364_+|4-alpha-glucanotransferase
MPARTKERPQMDDLARLAAQYGVATDYRPAADVTVPVPETTVRAVLGLLGVVTDDARSIRVGAESAEREAAGRLLPPTVVLWQGEPVAPEPAGLPPGTRVRVVEEETGAVLAWGPGLPLGVHRLTAEAPDGRTADATLVVAPQRAPAAPARAYGLLVQLYSLLSERSWGMGDLGDLAELARWAGRTHGAGFIQVNPLHAAVPGAPTDPSPYRPSSRRFPDPVHLRIEDVPEYAHCPDRTVLDELAARGGELRRQVLEKGALIDRDAVWELKRSALELLYAVPRTPEREADYRAFCAEQGPALDVHATWCAGHAGAEDPKEGSDFHRWLVWLTDGQLAAAQRAAREAGMAVGIVHDLAVGVHPQGSDVWGSSCYAGHISVGAPPDAFNARGQDWGLPPWRPDVLAATGYAPFRSLLRGVFRYAGALRIDHVMGLFRLWWIPEGTPPAEGAYVSYDGEAMLAILVLEAHRAGALVIGEDLGTVEPRVRQELARRGVLGTSVLWFERDWDGGGSPLAPQAWRADCLATVTTHDLPPTAAKLAGGHVELRDRLGLLTRPAELERAEDAADTAEWLELLDGLGLDTKGEEAAVRALYAFLLRTPARLVGVWLPDAVGDRRPQNLPGTWDQYPNWRLPVADAAGRPLTLEELVASPRANALLGAVGEGVRTRTAPPGARAV
>NZ_CP020555.1|WP_030384723.1|5181384_5181624_+|hypothetical-protein
MDKKNALRAGAVTAGTALMMLLMTSPALALTRDDGDDPGPGLSIGETVGLYVALPIVIFLVIVGLVMVLDKSDRKPKQA
>NZ_CP020555.1|WP_081523540.1|5181733_5182225_-|MarR-family-transcriptional-regulator
MSDDKDAVDAITAQWFAVRPDLETAPMAVFGRIYRIAKAMGDAMEQCYGRFGISRGEFDVVATLRRSGDPYTLSPRQLSATLMLTTGGMTGRLDKLEKAGLLVRKPDPHDRRGLQVTITDRGLALVDEAVTAGLEVQRAALTGLTDEEIAVLTGLLRRLLAGT
>NZ_CP020555.1|WP_081523541.1|5182365_5183298_+|EamA-family-transporter
MKRLATVALTALAPISWGSTYAVATELLPPDRPLFTGVMRALPAGLLLTALARTLPKGQWWWKSAVLGILNIGAFFPLLFLSAYRLPGGVAAVLGAAGPLFVVGLAALVLGERASLRTVLAAVVGAFGVSMVVLTAEAKLDAVGVIAGVISSASMGAGTVMTKRWGRPEGVGPLAMTGWQLTAGGLFIIPVAALVEGAPPALDGKAFLGYGYMMLINTGIAYWLWFRGIGALSATSVTLLGPLSPLTAAVIGWAALGQALSPVQLVGMAIAFGATVAGQLAAARTAKSFSSPEKNDQNISMDLMDEGVRR
>NZ_CP020555.1|WP_051778989.1|5183348_5184269_+|EamA-family-transporter
MDRVRTVSQAEPGSTGRKGAAGLGVLLALLATVVWSGSFVATRGMAETVPPVQAVFWRWIIALLAVAPFAARQAWQQRALIRRHLGFVALASLFGVTLYNTLVHQAGLTTSASNMGMIMAASPVIMALYARLGGERLGKRRTFGLLLAALGVLLLVGDGSIGFDFGAGDLWMFAAALSFATYSALLRRKPAELGGLAFLITTFVLGALMLAPAYAVSVAVQGGFEVTAGTVGPLLYVGVFSSAVAFFAWNKAVSMIGAARAGVVYYLQPVCVAGLGLLLLGERTGPAQLLCMALILGGVGLGSARR
>NZ_CP020555.1|WP_081523542.1|5184279_5185182_+|LysR-family-transcriptional-regulator
MTEWDIKKLRILRTLADQGTVTRTAEALHMTPSAVSQQLTNLARQLGVVLLEAEGRRVRLTDAAHLVLRHTEAVFAQLERADAELAGYLAGDTGEVRVGAFSTAVPALVVPAVAALRRAHPGVEVRVRETEAAESYELLSAGGVDLALSLAAHAPTARDPRFTRVVLLEDPLDVALPPGHPLAAAADLRLADLSGDPWIYGGSGPWSEIARSACEAAGFVPEQAHSASGWTAILAMVEAGMGVALVPRMVSSRASGSTVRVLAHDRPTRHVIAAVRRGAESAPALSHVLAALREAASARR

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Crispr_ID: NZ_CP020555_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_9

6121379-6121472

Orphan

Consensus_repeat	Method
GCCCGGCACACCACCGCGAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_9

>merge|NZ_CP020555|9|6121379-6121472|CRISPRCasFinder
GCCCGGCACACCACCGCGAGCCGCACACCGCAGAGCCGCCCGCAGGGCACCCCGCGCGGGGTCCGGGCGGCGCCCGGCACACCACCGCGAGCCG

>NZ_CP020555|9|8|6121379-6121472|CRISPRCasFinder
GCCCGGCACACCACCGCGAGCCG	CACACCGCAGAGCCGCCCGCAGGGCACCCCGCGCGGGGTCCGGGCGGC
GCCCGGCACACCACCGCGAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_053168272.1\|6129191_6132047_+\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|368582
NZ_CP020555.1\|WP_081523925.1\|6134008_6135631_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP020555.1\|WP_081523922.1\|6121681_6125248_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP020555.1\|WP_081523927.1\|6136583_6137012_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|153418
NZ_CP020555.1\|WP_081525286.1\|6111979_6112714_-\|AAC(3)-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|376807
NZ_CP020555.1\|WP_037861279.1\|6115652_6116555_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP020555.1\|WP_081523921.1\|6119029_6120685_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
NZ_CP020555.1\|WP_107475591.1\|6106550_6110540_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379328
NZ_CP020555.1\|WP_081523920.1\|6117602_6118997_+\|cytosine-or-purine-or-uracil-or-thiamine-or-allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP020555.1\|WP_053702647.1\|6116852_6117464_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP020555.1\|WP_053168270.1\|6132242_6132428_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_078626627.1\|6115115_6115316_-\|FXSXX-COOH-protein	unknown	unknown	gnl\|CDD\|275092
NZ_CP020555.1\|WP_081525283.1\|6105569_6106466_-\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|375614
NZ_CP020555.1\|WP_081525285.1\|6112833_6115077_-\|FxsB-family-radical-SAM/SPASM-domain-protein	unknown	unknown	gnl\|CDD\|275093
NZ_CP020555.1\|WP_081523926.1\|6135642_6136587_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187558
NZ_CP020555.1\|WP_158721329.1\|6110523_6111936_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|275098
NZ_CP020555.1\|WP_053704553.1\|6126444_6127305_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224001
NZ_CP020555.1\|WP_053168274.1\|6128849_6129050_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081523924.1\|6127326_6128406_-\|lytic-polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|376983
NZ_CP020555.1\|WP_081523923.1\|6125244_6126255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176459

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_053168272.1\|6129191_6132047_+\|NACHT-domain-containing-protein	gnl\|CDD\|368582	pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.	5.79701e-24
NZ_CP020555.1\|WP_081523925.1\|6134008_6135631_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	3.23224e-09
NZ_CP020555.1\|WP_081523922.1\|6121681_6125248_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP020555.1\|WP_081523927.1\|6136583_6137012_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	1.13179e-16
NZ_CP020555.1\|WP_081525286.1\|6111979_6112714_-\|AAC(3)-family-N-acetyltransferase	gnl\|CDD\|376807	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase. This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.	1.98752e-80
NZ_CP020555.1\|WP_037861279.1\|6115652_6116555_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.64102e-19
NZ_CP020555.1\|WP_081523921.1\|6119029_6120685_+\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	1.34473e-138
NZ_CP020555.1\|WP_107475591.1\|6106550_6110540_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	3.81417e-15
NZ_CP020555.1\|WP_081523920.1\|6117602_6118997_+\|cytosine-or-purine-or-uracil-or-thiamine-or-allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	5.71022e-39
NZ_CP020555.1\|WP_053702647.1\|6116852_6117464_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.01779e-12
NZ_CP020555.1\|WP_078626627.1\|6115115_6115316_-\|FXSXX-COOH-protein	gnl\|CDD\|275092	TIGR04268, FxSxx-COOH, FXSXX-COOH protein. Members of this family are very short (~60 residue) polypeptides, among which the fifth and third to last residues are nearly always Phe and Ser, respectively. Because members occur in a conserved context with a putative peptide-modifying radical SAM/SPASM domain protein, we suggest that members of this family may be the modification target. The gene symbol fxsA reflects both the FXA motif and the proposed role as a ribosomal natural product.	0.00227362
NZ_CP020555.1\|WP_081525283.1\|6105569_6106466_-\|DUF4231-domain-containing-protein	gnl\|CDD\|375614	pfam18184, SLATT_3, SMODS and SLOG-associating 2TM effector domain 3. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is always N-terminally fused to the SLATT_1 family, and is typically operonically linked to either inactive TIR domains or SLOG domains which could act as regulators of the SLATT channels.	1.63153e-47
NZ_CP020555.1\|WP_081525285.1\|6112833_6115077_-\|FxsB-family-radical-SAM/SPASM-domain-protein	gnl\|CDD\|275093	TIGR04269, radical_SAM_family_protein, radical SAM/SPASM domain protein, FxsB family. This model describes a radical SAM (pfam04055)/SPASM domain (TIGR04085) fusion subfamily distinct from PqqE, MftC, anaerobic sulfatase maturases, and other peptide maturases. The combined region described in this model can itself be fused to another domain, such as TIGR04267, or stand alone. Members occurring in the same cassette as a member of family TIGR04268 should be designated FxsB.	0
NZ_CP020555.1\|WP_081523926.1\|6135642_6136587_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.29335e-73
NZ_CP020555.1\|WP_158721329.1\|6110523_6111936_-\|TIR-domain-containing-protein	gnl\|CDD\|275098	TIGR04276, conserved_hypothetical_protein, FxsC C-terminal domain. This model describes a sequence region found regularly as the C-terminal domain of a protein (where the N-terminal domain resembles a TIR domain - see pfam13676) in the vicinity of a proposed peptide-modifying radical SAM/SPASM domain protein, FxsB (TIGR04269).	1.95898e-57
NZ_CP020555.1\|WP_053704553.1\|6126444_6127305_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	6.64162e-27
NZ_CP020555.1\|WP_081523924.1\|6127326_6128406_-\|lytic-polysaccharide-monooxygenase	gnl\|CDD\|376983	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.	3.5347e-65
NZ_CP020555.1\|WP_081523923.1\|6125244_6126255_+\|hypothetical-protein	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	7.60595e-38

>NZ_CP020555.1|WP_081523921.1|6119029_6120685_+|amidohydrolase
MARHPFPADLLLTGARIHTVDPDLPAAEALAVHDGLIVWVGPDDQAAAWAGPDTERIDAGGKLVLPGFIDAHNHVRLGSDADCVQLAGVRTLAGIHERILAWRQANPDAGWIEAEAFDYSAIPDGRMPCAADLDPVTGDTPAIVLSYDVHTAWLNTAAMRRLGVTRDRTDLPFGTAAVDPETGEPTGFVKDFAIKGLSRDGHRALRELGVPWASPDRQYGRLAKSLDDAIGFGITTVVEPQNSLDDLELFERARSEGRLRSRIVAALFHPRGTGDADLDEFADAARRFAGDRLRVGPLKLYIDDVVEPRTAALLEPYTGCGAHRGETFYPAEEFAELLAKLDARGFQCFVHATGDRGIRTVLDAVEHARTLNGPRDARHQVVHVECLDPADVPRFAQLGVIACMQPRHCAPEIAGPGQDWAQNVGEDRWHKAWPMRSLHEAGAVLAFSSDWNVAEMDPMVGIYTAVTRRPLSGDGPAWQPAETVDVETAVYGYTMGSAHANFLERERGSLTVGKAADFVILSRDILTVPADRIPGTVAETVVVAGEVVHRA
>NZ_CP020555.1|WP_081523920.1|6117602_6118997_+|cytosine-or-purine-or-uracil-or-thiamine-or-allantoin-permease
MGQQETIDVDEVFRVETHGIDPIPDAERHGSAKDLFWLWFGSNLTFTYVINGALAVAFGLSFWQATAVVVIGGLSFFAISAAGLSGIRTGTATLVISRAAFGVRGNFPAGVLNWVVSIGYTIVNTVVGTLALEVFFAEIGWQSGTAGRAVALLTTLALTFAVAMWGHATVQFAERWMAYVLAAGFGVLLLFVLPGTDTAAPAGAAPGLSGWSLAFVVMLAGPFSYLPMPADYTRYLPRTTSLKSLTWMGALGGFLSSVALGIAGVAAATQTDMTDAVAGAESLLPGWFQPLFLALVLGGSVTNSIITLYSSSLNLQVLGIPWSRARAIVISAAVTALGSLAALFFTDFTTSLLSFLSLLIIVFAPWGGVFLADMLLRRCHYDADALHTGSMGAYWYRSGYHPAGITALLTGMTFAALTCDSELWTGPLVAPLGGADLTLLGAAVSGLTYWALTRRRVAAYAPAA
>NZ_CP020555.1|WP_053702647.1|6116852_6117464_-|TetR-family-transcriptional-regulator
MAGAARRRDGQIAQERMLEEAMAAIAEDGLAALTMSALAERLGTSGGHILYYFGSKDRLLLEALRWSEEQLTGERRALLGRRVTAARKLDQFLELYLPEGPRDPRWTLWIELWARTASNQPLKAAQEEIDDSWQRDLEALLAKGVDQGRFAPMDVPARASELLALLDGLSTRVVLGQRGADRARALEQARSAAALLVPLVPRA
>NZ_CP020555.1|WP_037861279.1|6115652_6116555_-|alpha/beta-hydrolase
MRNQVRTADGRALTVERRGDPDGRPVFLLHGMPGSRLGPAPRGMVLYQRRMQLIAYDRPGYGGSDRHPGRTVADVAQDVAAIADALGIDTFAVAGRSGGAAGALACAALLPDRVTRTAAMVGLAPRDAEDLDWFAGMAASNVREYTTATDDPEELAARLIPRAAGIRKDPGRLLDELRRELTDNDRMIVSDAGLRSMLLRNYREGLRHSAYGWIDDVLAFSRPWGFDPADIRCPVLIWHGELDVFSPVGHSRWLARRIPGATTNIVPAAAHFAALRALPDVLNWLLRDLPAPGLTEQQPA
>NZ_CP020555.1|WP_078626627.1|6115115_6115316_-|FXSXX-COOH-protein
MPIPHGFPKDGAVNTSTTPATSSVKAHRVPLTKIDVHSASAATTLGRVLPAESARPVQAPIFNSAL
>NZ_CP020555.1|WP_081525285.1|6112833_6115077_-|FxsB-family-radical-SAM/SPASM-domain-protein
MIAFREIVLKVHSRCDLACDHCYVYEHADQSWRARPKVISPEVISHTASRLAEHARDHALPSVTVILHGGEPLLAGTSRLRLVCEEFGRALSGIAALDLRIHTNGLQLSRRYLDLFDEFDVRVGISLDGDRAANDRHRRFADGRTSHPLVLAAVALLRSEPYRHLYQGLLCTVDVANDPVAVLDALVELEPPRVDFLLPHGTWETPPARPDGAPDAYARWLLRVFDHWDRLGRPVPVRLFESLLSTLRGGPSLTESLGLAPTDLVVVETDGTLEQVDSLKSAFDGAAATGFNVFDHAFDQVAAHPGVRARQLGLAGVSDSCRRCPVVRSCGGGLYTHRYRERNGFDNPSVYCTDLRELVDGVEGRTALRETAPELSDPAELTRSQQELTRMLLARLHADLAGDPDWARAWELLAAVERAGEAGADALDAVLDHPFTRTWVLAALDAARGGTQDTAEAARRLTALGAAAVLRGGLELPAEVAYRDGEVYLPTLGLLRLGEPGTEGRAALHVTDEGYAVRDGRAEHRFGPAAGDARWQPVRTWSPGPDAAPVALEDLDPYRKCFARPPRLRLGTGEAEEWRGRLDRAWALLHEVVPEFARAAAAGLTTLTPLAGGPRAGGWGEAGRHGPGALGVPYAAGVRETALALLTGRRRTRLRALTEVADLYALDGEWQHRSPWRERPVPVSRLLADVHERVAVEAYRRATAAAEPGGSDRIHRALDRLSEAAELTVTGKRLVAELRYELKTVDA
>NZ_CP020555.1|WP_081525286.1|6111979_6112714_-|AAC(3)-family-N-acetyltransferase
MRLLVHAALGGTGLRAELLRDALTGVLGPRGTLVVPAFTPANSKTSTAHLERIGGLDEAGVRAFRERMPPFDAASTPSQGMGSLAEAVRTAPGAARSAHPQTSFAALGADAERICAGHRLESHLGEESPLGKLCWEGGQVLMINVGFSVCTAFHLAEYRIPKPPLRMYECVVKVNLPGLQRHRQEGEWTSYEDVALDDSDFAEIGEAFPDSRVRRGRVGGASAMLFSLPEAVDHALDWMTENRR
>NZ_CP020555.1|WP_158721329.1|6110523_6111936_-|TIR-domain-containing-protein
MFLRSHLRDGGRVPASGEPYFFLSYAHTPRFGAGGPDPDMWVERLFRDLCGHVMALTDLRAGYDVGFMDREIRSGEGWSERLARALANCRVFVPLFSPRYFASEMCGKEWFAFAQRAVQHGAVRNTPAEAIVPALWVPVPPEQLPGPAERLQFNHNTFGERYVTDGLYGLIKLRGYAEQYEQAVYELARRIVQVAETAHLEPIRPLDYRNVPSAFGSSGSPARTLHVTVAAASRHELPEGRTPEYYGDSALEWNPYHPVAQRPIAYVAEDLVKNLNYQTTMSSFDDDAGHLDGKQLPTRPEILIVDRWAVEDEDRRQRLAAFDRDPRPWINVVVPWNRYDHQSRTKESELADRLEATMPKTMSQGRAACRAAANGVANVETLGQILPQVVEAAAQQFLRHAQPYPPKGDTSIERPRLLGPMGMNGPPGPPSPRVPFPPDSDRYRTGPAGAGLHDNDDNDTDRGDADDSEQ
>NZ_CP020555.1|WP_107475591.1|6106550_6110540_-|tetratricopeptide-repeat-protein
MTASSDSDSDSRDGRIVTFYSYKGGTGRTMALANTAWILAANGKRVLAVDWDLEAPGLHRFFHPFLDPSTLGATTGVIDLISEYAWAATSPVQRPDDWHKDYARIQPHAVSLTPETHGWEFPDGGTLDFVSAGRQNREYSATVSTFDWDNFYDRLGGGLFFDALRADMKRNYDYVLIDSRTGLSDIADICTVHLPDVLVDCFTLSDQSIDGAASVARQIDERFNDRGIKIYPVPMRIDEGEKEKADAGRALARIKFDRFPNGLVGDELTSYWGAVEIPYRPYYAYEETLATFGDEAGLTNSLLSAFERLTAVVTEGHITSMPVIGEEVRLRIRDAFTRRRPALPADLFLSYVAENRMWADWIESVLTRAGFRVVPKDVSAERAPGATAGDTLGGAGISIDTAARTVVLLSTAYLKSARAVDVWERAAAEDPTGGRRQLVPLRVGDVRLSTPYIDRNPVDLFRLDEVHATTALLRAVERPMALPDSAGSASQPGPRFPGTVPKIWNAPPRNPGFTGRSIVLERMRDQLGGGMAVVLPQPQTLFGLGGVGKTQVALEYVHRFMADYDLVWWISSEQTDDVVAALAELAVRLGAQTGEDMAAASQEAIDLLRRGVPSSRWLLVFDNADDPETLKRFFPPGGPGHVLVTSRNQSWSQYGDALPVDVFLREESIEHLQRRAPGLSKDDAEQVAVAVGDLPLAVEQAGAWIAETATPVSAYIEQLAQQAARVLALNQPPGYPEPVAATWNISIERLQSRSPAAVRLLQLCAFLAPEPISANLLYSKEMIDALKPYDSSLQEKLVLGRVIREIGRFALAKVDQVSNSIQVHRLVQAVIRNQLTEEEQREARHAVHRILAGARPDDDEPIDNPETWPRFNTIWSHLTPSEARFCKEPETRRLLIDRVRYLWKRGDFKAAYSLGEELRESWKEMLGNDDLQYLYLRFHLSNILRSQGRFVEAKELDEVTLERQRAVLGPSHPHTYMTMSGLANTLGALGQYGQAMELATDAHEGFSQIFHEAHPRTLAAANNLALNLRLVGQYTRAREIDQEVHDLRTEVLGPEHPYTLSSAQNLARDLREVGRYEDSVQLLSRTYETYKRTLGRAFPGTLSAAKNLAVSLRRAGQLEDALRLTTATRARYRAKYTAVNPDLLSCELNLASDLFATGDPGGARDLAQEVVDEYMKVPGERHPYTLAAVNNLAVFHWGTGAAETAETMLRQTIRGMRDVLGDNHPHTVFAHLNLANTRADLGDPEGALELERLAVMRLREALGAHHPETLASSSNMAVSLDSMGRKEEAARLRAEAVSELTRLLGEDHSLTRYARDERRIHRDLEPLAV
>NZ_CP020555.1|WP_081525283.1|6105569_6106466_-|DUF4231-domain-containing-protein
MTFRNEDLPALFHHTDQAAISRQRESTQATRAQLLLLVLAAAAAALPAGPKLGSMYLFGLLSVLSYVGVLVVGMRATRRRARPQWQLNRSAAEFIKSLAWRYAVHGAPFGSEVADPGATYRTRLEAGLAELRKMGWEDPRTSGAVPEGGEITGAMQRLRGMDYQARRETYVRDRLIEQRNWYRRRTEVSRRATNLWSWTIVLLTCLALLFALLGSFGSGPGPRLTALLSAAAAAGIAWNEVRRHHPLIEAHTLIEQDLAAMMVVMQTTITESQWPSSVYETERYVSPQHTDWLARHSS
>NZ_CP020555.1|WP_081523922.1|6121681_6125248_+|DNA-polymerase-III-subunit-alpha
MPGFTHLHTVSGFSMRYGGSHPERLAERAADRGMDALALTDRDTLAGAVRFAKACAGAGIRPLFGVDMAVSPAAGPAVPGGSTGSAAGGGPGEASYRRRTPVKGGAFVDESAARAVFLARDGAAGWAELCRMVTAAHAGAAEVPLVPWGALRGESVFVLLGPDSEVGRALAAGRPDRAARLLGPWREVYGDSLRLEAVHHGRTGTGPGSLRLAARTVGFAADQGLPAVLTNAVRYADPGQGPVADILDAARRLVPIDPRNPAHPLDSGERWLKDPAAMAEAADRIAQAAGLRPADARRLLAETRRTAEACSVDPEDDLGMGSVHFPEARLVGAAHRSAQRVLASRASAGMVLRGYAGDRAYWERMHQELDIIAYHGFASYFLTVAQVVDDVKEMGIRVAARGSGAGSLVNHLLGIAHADPVAHGLLMERFLSKRRRVLPDIDIDVESARRLEVYRRIMDRFGTERVATVSMPETYRVRHAIRDVGAALSMDPAVTDRLAKAFPHIRARDARAALEELPELRDVRGQSYGRLWELVESLDALPRGIAMHPCGVLLSDDSLLARTPVVPTSGEGFPMSQFDKDDVEELGLLKLDVLGVRMQSAMAHAVAEIRRGTGQDLDLDDPAQVPPGDRATYELIRSAETLGCFQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRFPHPDLADALRETYGVVVFHEQIIEIVHVMTGCGRDEADRVRRGLSDPQSQARIKVWFAARAAERGYPVEVIGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPKRLLLADARRRGVPVLPLDVNRSAAAHRIELVSDAGGVWGLRLGLSDVHGISGAEADRIEAGQPYASLRDFWDRAHPGRPVAERLAQVGALDAFGANRRDLLLHVSELHGAQRAAGVRGPQLPLDGGRSTASVGLPDLTEAERLSAELGVLGMDASRHLMGDHHAFLAELGVIPARRLRDTEHGQTVLVAGAKAATQTPPIRSGKRVIFTTLDDGTGLVDLAFFDDSHERCAHTVFHSFLLLVRGVVQRRGPQSLSVVGAAVWNLAELVELRAAGGLDAVAARLAEPAEPVEPTGSGDGTAEGGGGDGGEGDGGEGGKSGAKAPGRRIRMSTGYEMNPWADLQPPGTGPATGRKLWHSSPGSAG
>NZ_CP020555.1|WP_081523923.1|6125244_6126255_+|hypothetical-protein
MTTAERVVMCLRPHPADGGPLGAREYAGVLALLGGITPAVQALPPETVLADVRGALRYFDCDATRLAAVIRVRALALYGVDATVGVAGNPMLARAAAREARPGGTLVIPGDPAAVREFLAGKPVTVLDGVGPKAARTLCSYGLDSVGRVAAAPPAALRRILGARLGREVHERALGIDRTPVRPGAAARAIAAERLFDLDELDPARHRRALLSLTEELGAKLRTQEQGRGQVCRALSLTVRCADRTTLTRTRTLAEPTAHSAALTDTAYALYAGLGLQRARVRALSLRAEDLTSADRAVRQLSLDPEDEKARRLEAVTDRVRARFGPHAIARGTLAA
>NZ_CP020555.1|WP_053704553.1|6126444_6127305_+|alpha/beta-fold-hydrolase
MLPWRRLLRPLVVLALTAAALVAPTGAAQAAAAPSSGWNNWSCKPSAAHPRPVVLVHGTFGNSWDNWLGFAPYLVNRGYCVYSLDYGQLPGVPLFNGLGPIDKSAEQLAVFVDKVLAATGSAKTDIVGHSQGGMMPRYYLKFLGGASKVNALVGLAPDNHGTTLLGFTKLLPYFPGAEDLISTATPGLADQIAGSAFQQKLNAGGDTVPGVKYTVIATQYDQVVTPYRSAFLDGPNVRNVVLQDLCFLDLSEHVAIGLTDRIAWHEAVNALDPAHAERTTCASVFD
>NZ_CP020555.1|WP_081523924.1|6127326_6128406_-|lytic-polysaccharide-monooxygenase
MPARRRTAVALTRIASAGLAPLALAAYAAAPAVAHGSMTDPVSRVAACYAEGPESPKTAACKAAVASSGAQAFYDWNAVNIANAAGNHRTLIPNGRLCSAGNDKYRGLDLARADWPASPMTAGAHTFRYKGTAPHKGSFELYVTKDGYDPAKPLAWSDLEPAPFAKATDPGMQNGDYVFSGTVPKKSGRHLIYSIWQRSDSPEAFYTCSDVVFGKDNGGGTGTGAGAGTGTAPTAKPGTGTGTEPTGKPADKPSAPTDQQIADGADKSSVEHKGHGDNDPKTNGTADAAAPIAAGASSSSSAPSALSAAGKENLAETGGNSATPTIAIAGAAALAVGAAALFAAARRRTARTATGRHGR
>NZ_CP020555.1|WP_053168274.1|6128849_6129050_-|hypothetical-protein
MTFGTHDALIAMAVLVALLIALLCAVVAGVLARADGATIPGAFSRAGVAFAATMGVATGLLTLFGR
>NZ_CP020555.1|WP_053168272.1|6129191_6132047_+|NACHT-domain-containing-protein
MNETDSLLMLHRALRNARLGRGLSMTAVATRSRLSRTTVSQAFNSSVPPSEETLAALAPILRLDLETLLTYRRACPGPRSSNSAPVATVKSAGRVPEDDAVFEARYRDYLKTRHGQLTVVGLDLRGPAASSWPLDAAYLSLELADSATQAQRVERAEHALRRNNRLLIRGLAGSGKTTLLQWVACAAADGELLGPNDGPAQPPVAFVLPLRTFARRSEGLPTPQEFLSAVGCPLAGAQPSGWTDRVLDSGRGIVLVDGLDEVPERMRDRTSIWLQELVAAYTRARFVVTTRPTAVAEGWLAASGFRELTVRPMSRDDVTVFVARWHTAAKASTDDSEVQAHLDGLENDLKEQVRAKRDLSLLTTTPLLCALVCALHRDRRGQLPHDRVELYEAALTMFLYRRDHEREVVAPEGFTLSEKESVQLLQRLAYWLIRNGQTEMPHGTAVAIMTDALMSMHAVAQQGDATQLLNHLLTRSGLLRRPTPDTIDFVHRTFQDFLGAKAAVEAHDLPLIARNAHDAQWEDVVRMAVAHAREGERVELLEAILARSHEEEYRKRLALLALACLRHATELPPATREKVEINAGSLLPPQSWTAANELGDIGPLVLDLMPSAVDTPMRHARYSIRTAKTIGGDGALAYLKSFSGTQDLWARAGLCAGWSDFDPDEYVAQVLAAMAGELPNVHLVEDRQIQAIRPLRVTKVTFVGDHTLQAIGRLPHPERIKSLTLQGNGRVAELNQLPTLFPQLEELQLEACRKMRDLAGLETTSVSQLSLIGSTMLRNLGPLKRMNGLRSLRLLDLERLTPGRVPALPQLEWLDVDHGGFLTMLDRWPGLTRLSVQGAGFLRGGNFELPPRLSHLDLWNVELEAACRPWFEGLTQVTDASFGTRSGVVAPLVDYFPQVRSLRIIAIHGSIEVDVRPLLELSELSKLTLDGFTRVIGGEAFAPDVIRIEHS
>NZ_CP020555.1|WP_053168270.1|6132242_6132428_-|hypothetical-protein
MSDETEIIVHPVSSQGGRKVTVHALGVDADRGRAHAPRDVAEFLRRAGLKDVDLSEDGPIT
>NZ_CP020555.1|WP_081523925.1|6134008_6135631_+|helix-turn-helix-transcriptional-regulator
MTVAPPTPSLCTRCGTKLSRSNIDTVCSPCRRAVGPKASGSPLRAVPADTEPHWLAGSAERSAPPDGSNLADVLKAYRALHKLKQQDLADLLGYDQSYVSLLERGKRNIRDMVELRRLPHALALPEDELGLLPPAEATVTVGASAGESGKGSPLAALDDQRRWRMTRRELNRHRADLTKAAARLYPDASRAGNSPVLTRESWMWPEPVDFADIELAWLTQTSPPEVTGRERQAEGVRPLAPHGTKFDRYTQAIRMIDRPSLFVNRPSFRLLDVAQTEGHPKLSFGYTTYFDMADVCEGVAHELASAWLTTGSDPAWIGDPSWAELPFRSLVGDPFDLAHRPLLPSIDTLTIRLGPDGASFPLHHRSASNVALAGGTYHVMPAGVFQPSSVMPWDQSNDFNLWRNVLREYAEEFLGDPEADGSSGEPIDYDGTEPFRTLNQARREGKVRPYCFGIGLDPLTLAGEILSVVVIDADVYDSVFSGMVSRNSEGAVVAGSPGSSGAGIEFTEANVRRLLDNEPLASAAAACLDLAWQHRGLILG
>NZ_CP020555.1|WP_081523926.1|6135642_6136587_+|NAD-dependent-epimerase/dehydratase-family-protein
MRVLVTGAYGFVGNAVVRRLVEAGHDTVVLTHRPADVPLPELPISEIFRGDIRDPNALTEALDGVQGVCHLAALTRVRESFKRSEEYQAVNAGGTMTLLDALASARAGSKVPTVVLGSTAAIYGAPERQPIGEDTVPAPGNPYGTSKLAADRALQARAESGAINAVSLRCFNISGSVNGVGDADESRIIPKAVAVAAGHHPHLDMNGDGEAVRDFVHVDDLARAYVMALEAPASAPFRAYNVGATPASMREIVATVERVSGREVPVVHRPPQPEPPRLVADISRITTDLGWKPECSSLERQVTDAWAVVSGTSR
>NZ_CP020555.1|WP_081523927.1|6136583_6137012_-|GntR-family-transcriptional-regulator
MTEFRGQPAYLQLADDLRERIRSGKIPDGVALPSAQELIDSSGASSTVVKNAVSLLRAEGYVVGHQGKGVFAQFPPRLADHSRGVADWAMPLLQAGTELEAALRDALSETATASAHSEAALERWREAFADLPESVKDRLAKS

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Crispr_ID: NZ_CP020555_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_10

6155326-6155429

Orphan

Consensus_repeat	Method
CTGCCCCCGGACCCCCGCGCCTCAAACGCCGGCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_10

>merge|NZ_CP020555|10|6155326-6155429|CRISPRCasFinder
CTGCCCCCGGACCCCCGCGCCTCAAACGCCGGCGGGGCTGGGTCGGCAGGGCCGTTGTCGGGAGTTCTGCGCCCGGACCCCCGCGCCTCAAACGCCGGCGGGGC

>NZ_CP020555|10|9|6155326-6155429|CRISPRCasFinder
CTGCCCCCGGACCCCCGCGCCTCAAACGCCGGCGGGGC	TGGGTCGGCAGGGCCGTTGTCGGGAGTT
CTGCGCCCGGACCCCCGCGCCTCAAACGCCGGCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_107475592.1\|6152077_6153151_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP020555.1\|WP_030031714.1\|6159550_6159805_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_159396447.1\|6163858_6164983_-\|DNA-methyltransferase	unknown	unknown	gnl\|CDD\|380119
NZ_CP020555.1\|WP_081523948.1\|6153863_6154838_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP020555.1\|WP_030388757.1\|6154909_6155299_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP020555.1\|WP_030388756.1\|6155448_6156546_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NZ_CP020555.1\|WP_081523943.1\|6147878_6149423_+\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NZ_CP020555.1\|WP_053177136.1\|6149766_6149964_+\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP020555.1\|WP_081523950.1\|6159854_6161051_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP020555.1\|WP_081523940.1\|6145867_6146524_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020555.1\|WP_081523945.1\|6151396_6152068_-\|histone-deacetylase	unknown	unknown	unknown
NZ_CP020555.1\|WP_081523941.1\|6146611_6147532_+\|DNA-primase	unknown	unknown	gnl\|CDD\|378140
NZ_CP020555.1\|WP_081523947.1\|6153384_6153867_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|377233
NZ_CP020555.1\|WP_081523944.1\|6150034_6151228_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP020555.1\|WP_081523951.1\|6161139_6161928_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NZ_CP020555.1\|WP_081523953.1\|6166187_6167501_-\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421
NZ_CP020555.1\|WP_030388750.1\|6163020_6163746_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367243
NZ_CP020555.1\|WP_053177135.1\|6156752_6157556_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238861
NZ_CP020555.1\|WP_081523949.1\|6157525_6159256_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP020555.1\|WP_030388748.1\|6165374_6166124_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_107475592.1\|6152077_6153151_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	1.39977e-172
NZ_CP020555.1\|WP_159396447.1\|6163858_6164983_-\|DNA-methyltransferase	gnl\|CDD\|380119	pfam18135, Type_ISP_C, Type ISP C-terminal specificity domain. This is the C-terminal domain of Type ISP restriction-modification enzyme LLaBIII present in Lactococcus lactis subsp. cremoris. Type ISP restriction-modification (RM) enzymes provide a potent defence against infection by foreign and bacteriophage DNA. This domain interacts extensively with DNA and is known as the target recognition domain (TRD). TRD works by recognising 6/7 base pairs of asymmetric sequence.	3.52936e-47
NZ_CP020555.1\|WP_081523948.1\|6153863_6154838_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.60257e-09
NZ_CP020555.1\|WP_030388757.1\|6154909_6155299_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	5.15257e-21
NZ_CP020555.1\|WP_030388756.1\|6155448_6156546_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	1.67998e-09
NZ_CP020555.1\|WP_081523943.1\|6147878_6149423_+\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.46412e-101
NZ_CP020555.1\|WP_053177136.1\|6149766_6149964_+\|excisionase-family-DNA-binding-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	7.90095e-09
NZ_CP020555.1\|WP_081523950.1\|6159854_6161051_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	2.87551e-130
NZ_CP020555.1\|WP_081523941.1\|6146611_6147532_+\|DNA-primase	gnl\|CDD\|378140	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	1.04721e-49
NZ_CP020555.1\|WP_081523947.1\|6153384_6153867_-\|DUF402-domain-containing-protein	gnl\|CDD\|377233	pfam04167, DUF402, Protein of unknown function (DUF402). Family member FomD is a predicted protein from a fosfomycin biosynthesis gene cluster in Streptomyces wedmorensis. Its function is unknown.	1.06521e-17
NZ_CP020555.1\|WP_081523944.1\|6150034_6151228_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.82115e-19
NZ_CP020555.1\|WP_081523951.1\|6161139_6161928_-\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	2.59402e-18
NZ_CP020555.1\|WP_081523953.1\|6166187_6167501_-\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
NZ_CP020555.1\|WP_030388750.1\|6163020_6163746_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	2.28848e-10
NZ_CP020555.1\|WP_053177135.1\|6156752_6157556_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	4.21654e-54
NZ_CP020555.1\|WP_081523949.1\|6157525_6159256_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.19063e-109
NZ_CP020555.1\|WP_030388748.1\|6165374_6166124_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	6.43555e-43

>NZ_CP020555.1|WP_030388757.1|6154909_6155299_+|GntR-family-transcriptional-regulator
MTSTNLKITIDGSAGSAAPYEQLRAQIADRARTGKLPAGFKLPTVRGLAEELGLAANTVAKAYRALEADAVIETRGRNGTFIAAAGDGVSREAASAAQAYADRVHRLGLTQAEALAAATEALRARYAAK
>NZ_CP020555.1|WP_081523948.1|6153863_6154838_-|GNAT-family-N-acetyltransferase
MTVSIRDLRPVDPSDAESVVRVLRAALPFTITTAEGVAFELSSGHPAKHHRILVAEGPDGLVIGTAQVGIAYDSPEPGQSYVNAYVHPAHRGLGAGRLLLRAAEEHLAALGAVDVYAWVLDEPAHRAFAERHGYRASRSAHFLRLDLTTAELPEPPRDGDLPAGVELRPGSAFAADPRPLFEADAETTSDEPGDVAAGFDDYEQWLAQTWHSPSLDKELTTVALVDGVVASFAAAQTDGATRYGSAMTGTLRAFRGRGLAKLAKTVSLHRARAAGYTEAFTGNDAGNDPMLAINEWFGYEICATETRFTKKLTTPKKPNELEKP
>NZ_CP020555.1|WP_081523947.1|6153384_6153867_-|DUF402-domain-containing-protein
MTSQLTVVLTKAGRTKIRYPAAQVADDGDRISVRAPWAAEGVRDFGFVRFEPGDVFVEHFWRTRWYAVKEVWTGDGVLKGWYCDVTRPALVQSGEILVEDLDLDLWVSADGTSVLRLDEDEFAESGLTTSDPEAAAQAVRALDALDDQARSAAGLAALLT
>NZ_CP020555.1|WP_107475592.1|6152077_6153151_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MGSPVVLGIESSCDETGAGLVRDGRLLGHAVASSMDAHARFGGVVPEIAARAHVHSFTPVVREALDRAGLRMADIGAVAVTTGPGLSGALQVGLAGAKTLAFSLGVPLYGVHHLAGHVAADTLEHGPLPDPCVVLIVSGGHTSLLLVRDLARDPIVHLGDTIDDAAGECFDKVARVFGLPYPGGPAIDRTAREGDPRAVRFPRPLTGPRDAPYDFSFSGLKTAAARWAEQHRIRGEDLPLADGAASLQEAVADVLTRKAVAACREHGVGTLVVVGGVAANSRVRALAEARCRSAGITLRVPPLKLCTDNGAMIAAVGDLLMRAGAEPAPLDVSIDPSAPLEYAALHPVARAAARLAS
>NZ_CP020555.1|WP_081523945.1|6151396_6152068_-|histone-deacetylase
MPVHTAAPLAGTVPVPERVWYASYGSNMHMDRLAAYLAGGTPPGATRTYPGCRDHRAPERSIAVELSGCLYFATESPVWTGGRAFYDPTAPGPTRARAHLVTAGQMSDIAAQEMYERPGRDLDLTAVLRDGRDELGPGRYETLICPGTIEGIPLLTFTAPWSLQDVEVRTPSAAYLRYLAGGLLESGPWQEQDIAEYLATRPGATGHWTPAQVKTLLTTDTPG
>NZ_CP020555.1|WP_081523944.1|6150034_6151228_+|tyrosine-type-recombinase/integrase
MENERAPARKAANGEDSIYWDASKSRYIGAISLGYTAAGKRNRAKVSGTTKTEVRRKLRELRKELDKGAKAPAQYTVKQAVDDWLAQGLKGKAIASVGTYRSLATTHIYTELGAAKLCQLEADDVDGWLDSRAALLATTSLRLLLSILSRSIAHAQRRGKAVRNVAELVEAPEGKPGRPSKSLSLEQGEAILRAGVGTWIHAYVVLSLLVGTRPEETRPLPWKHVHTAPADGRKPHVDVWRSVRSHGDTKTPKSRRSLAMPRQAAEVMEAHRRRQQAESKAADRVWSDEDLVFPREGGEVRTALDVRRNFRRLLAEAGIERPHEWTTRELRTTFVSLLSDHGIPIEVIARVVGHSGSNTTERVYRKQLRPVIAEGAEAMDEIFSGEEKEVPFRPESA
>NZ_CP020555.1|WP_053177136.1|6149766_6149964_+|excisionase-family-DNA-binding-protein
MVVPEKRLHSVEEAAELLNVGRSTAFEEIRLGRLRTVRVGRRRLVPTEYVDEYVELLKIEAHKAA
>NZ_CP020555.1|WP_081523943.1|6147878_6149423_+|DUF3987-domain-containing-protein
MTTYDPELWDGFDTMTPEDITGSGPGWDEPVPLNPRGPLPAFPVDALPDWLAAMTAGVAEETQTPVDLAGCLALAVIGTAAGGRLTVNVRGQWSEPVNLYTAVALPPGNRKSAVFGLMTKPLLAAEKALIELTAPQRTEAAASARIAKAAAERAEKLAANAEADKQAGLTAQAVSLSEAAERAVVPVEPQLVADDITAESLTTLLAQQDGRISILSPEGEIFEIIAGRYSGVPNMGIFLKGHAGDMARVNRQARDPQYIENPAITMGLAIQPDVLDSIGQIKGADGRGLLARFLYSKPESLVGYRNLTPELLSPDTADTYARKLGGLALTLAAWTETAELTLTPEADAVLLAYQRVTESRLRKDGPLAPIVNWASKRDGAVARIAGLLHLAAHPEDGWHLPIAAATMAAATRLGDYFTAHALDVFNAMKADPAQQAAHTVLTHLTETRTATFTKRDLFRAMPRSEFPAMGDLDPALDLLEEHGWVRQQPPRPRTTRGGRPPSPRYETHPRITPA
>NZ_CP020555.1|WP_081523941.1|6146611_6147532_+|DNA-primase
MTQPAPIRRDGRLQLIADALALAARGWPVFPLRCGSKAPALHRQDRCPRTGACGDGHVKWEQRATTDPAVIVRCWNHKPYNIGLATGPAGLIVIDLDMPKPDSSQDAPGGAGNLWALCERAGQPVPATLTVRTPSGGTHLYFTAPDGIRLGNTAGKLAPLVDTRAHGGYVVAPGSTTPAGLYEVTDSLPVAELPDWLLSLLQPPAPAPVRRLVGPAVSGTSAARAALDAECDVVRAAPEGQANNTLNRSAFKVGRFVAWGDIAREEVEGAFQVAGEERGLTVAECRSTIRSALDSSARTVRARDTA
>NZ_CP020555.1|WP_081523940.1|6145867_6146524_+|hypothetical-protein
MTRTTMPWFETLTDSVSALGAAAREARIAHRAAQAAAEQYSLDRLRPVDGAITVRGWQSGVPDRPHDRALFEIGASHRAHERRMTELYDNAAAAYAYGAAWAIHRVLDGQQPPFVELGRKPGGRIAIPEELFPVPPAFKGLDRWSGHQRFEHARSELERLGDLWACVDLDEDDFPDGFNVADTLEDLEAFPDAAFLYGQIAESALTFTLLEPRHGHRS
>NZ_CP020555.1|WP_030388756.1|6155448_6156546_-|AAA-family-ATPase
MSANPQDALPIRLNVDDSDSPSDVVDALFLGRFASGEQPYSHSVSIERVKAEATLLPPEATVLRSARDSDRSATLAEGEGWTMLVSRWSRGADVTVTAVSDELAAGVLGKATEGVQDEPEPQPENVTMGFWYVSPRRGPYRTTRQIAAGTWPEVRPNYTAPVAGAMDRLMKVTPDDIAGRLLLLHGPPGTGKTSALRTLARSWRDWCQVDCVLDPERLFNDVGYLMDIAIGEDEGTAKGRWRLLLLEDCDELIRGEARHTAGQALSRLLNLTDGLLGQGRNVLVGVTTNEDLERLHPAVVRPGRCLARIEVGRLTHREAVDWLGTDEGVSREGASLAELFALRRGTGPAAVLPPQPHTSEAGLYL
>NZ_CP020555.1|WP_053177135.1|6156752_6157556_+|SGNH/GDSL-hydrolase-family-protein
MRLSRFAALSSSLLLAAGAALFGAGQAAAAQADFGYVALGDSYSSGVGAGNYDSGSGNCKRTTRAYPALWAAAHSPQTFSFTACSGARTGDVLANQLAPLNSGTDLVSITIGGNDAGFSDVMTTCVLQSESTCVNRVNQAKAYVDSTLPGQLDQVYNAIDSRSPGAHVVVLGYPRFYKLNGTCTTGLTEGERAAINGAADHLNAAIAKRAANHGFTFASVAGAFTGHEICSGNAWLHSVNWLNIGESYHPTAAGQSGGYLPAFTNAA
>NZ_CP020555.1|WP_081523949.1|6157525_6159256_-|serine/threonine-protein-kinase
MSEQSNSDRVISGRYRLLEPIGRGGMGIVWRARDEVLAREVAVKEVRAPAGLEPAELERLYRRLEREAWAAARVSHRGVVTVYDVASEDGRPWIVMELVRGLSLADVLEAEGPMPPQRAAHIGEQVLAALRSAHDCGVLHRDVKPANVLIANDGRVVLGDFGIASLEGSSAITMTGEVVGSPEFLSPERALGRDPGPASDLWALGVMLYAAVEGATPFHGATPLDTLRAVVDAPLPPPRRAGALEPVLEGLLRKDPAERLPAAEAARMLRVVGAGGTVRASGGPVSGPDGPTTVARHGLQGAGEPHDPYGAQPARVAQPARPAPYGTPPPVAREGHAGLVLTAGIVLMLLALVAVGWLLLRDRGNGGGTSGGNGAPTGAATSAQTVTTAPSTAPSAPVSASASGAAGQHVSVYVDSVRSSYTGSCPPPAEYAPAFTATVEVERTPVVLEYRWATRSGRTSGPGWQSVTYEESGPRSRRLEHAELTHEPDGVFEDAVRLEVRGPAEVATQWVATSVTCRKETPTSGAPSPGPSTSPASPTASAPASPATGEPDGTDGTDRAGRVDRADQAAFVKAGR
>NZ_CP020555.1|WP_030031714.1|6159550_6159805_+|hypothetical-protein
MRSRPPRVPAITCGSSATSSRLDRHLAVLGGPAVPHREAAEATLLMRELTSRDHTHRLRSRSARVSLFAPLRRLRRTLFGSRRS
>NZ_CP020555.1|WP_081523950.1|6159854_6161051_-|CoA-transferase
MATEPLPLDGVTVVAVEQAVSAPFATRQLADLGARVIKVERPDGGDFARAYDTAAHGLASHFVWANRGKESIALDLKDPRGREVLHGLLADADVFVQNLAQGAAARLGLDSAALCARYPRLVAVDVSGYGAEGPYAHKRAYDMLVQCEAGLVSVTGTPDQPVKAGIPAADIAAAMYAFSGVLAALLRRGVTGRGGRVEVSMLDALAEWMGHPLHHTMHGGEQPVRTGLAHAVIAPYDAYATADGDRVLLSVQNDREWRRLTQQVLEQPELAEDPAYATNTARTGNRERTDAVVAEALGRLGADEAIGRMEAAGIACARLNSVAQLAGHPQLAARDRWREVASPVGPLRALLPPIGLPGGAAPHMGAVPALGEHTESLLRALGMADAQISELRRDGVIG
>NZ_CP020555.1|WP_081523951.1|6161139_6161928_-|ABC-transporter-permease
MSTLLSDGGAVLTRQLQKARHAPALLILTQTMPITMLLFFGYVFGSAVAMPGAEYREFLVPGLLAATAANGLMTGLFTAAQDAHRGVMDRFRTLPMSRSAVPLGQTAADLLTTGVAMVPLMLVGLAMGWRIENGLPGALGALGVLLLFRFATAWVGTYLGLLSRNEEAAGQLGGATFILPMLSSAYLPTGGLPGWLRAVAEWNPISAVATAVRTLCGNAGGGAAAGAAWPAAHPVAGALLWSGLLLAVFVPLATRRFARGAR
>NZ_CP020555.1|WP_030388750.1|6163020_6163746_+|TetR/AcrR-family-transcriptional-regulator
MTAGGRPAEPEVIWSRPQRAGRGPRPAHSRESIASEAVRIADEEGIEAVSMRRVAAGIGAGTMSLYNYVPRKEDLYELMVDAVSGEYEFPAPTGDWRADLLVLARGTRALMHRHPWLPRLLTPVYGFGPNALRYLEYTLDCLAPLDVPDAEKLELVAAVNGTVATYVAGELALAERARSLPWSEAEEQRVRTAWLGSRLASGEYPRLAAALTGGGPVPGAGLDMAAVFDRTMTRLLGAWES
>NZ_CP020555.1|WP_159396447.1|6163858_6164983_-|DNA-methyltransferase
MPWAVGSLRLGRDWVAAPDPAALRARWAALTGSEGAERERLFRPSRSRRPDAGAAALPGQRSAATARFADSPGPCPEPVRVLREPFDEQWLLPDQRLIDMARPELWRVRDEHQLFLVETPDPLVTAHLPVGRLGRIRPLHRRPGGAEPNLAPGLLHLLGERHGGWVTPEDVLCWILAAGRPGPRGYEVPLAADPGRWRAGLELGHRLLTVQLRGARGGEAPRLPGGRRPYVRSAVPGRPHEMAYDAESETLSLGSGTVSPVPAGAWEYEAQGVRVLPAWFAARTAHRAPDAEGLAALGPAEWPQSWTSELLALVTTLALLAELAPERAAFEPGPGLPAEALRAAGVLPPPAWARRPASVLDHQEEGPGGQFALL
>NZ_CP020555.1|WP_030388748.1|6165374_6166124_-|GntR-family-transcriptional-regulator
MTAFAPDSLVLNRKLPLWYQVSQSLRASILGRTPDASLRLPTEEQLAEHYGVSVLTMRQALKELEGEGLISRHRRRGTFIEPGALRSTPVRLLGSVDAIVAQQSGDRTTILGHGRTAVSGELLEHFPGTPEVVTYRRLRHDRESGEPTNWVENAVLPEFADTVDLADLERWPMTKVLRDVVGVRISRITDTVEARLADPETAELLQVPLLSPILHYTGVTYDEDGRVVDVARIRYRGDRFSFTVTVDAH
>NZ_CP020555.1|WP_081523953.1|6166187_6167501_-|homogentisate-1,2-dioxygenase
MSEQARKTAEALEYLTGFGNEHSSEAVPGALPIGRNSPQRAPLGLYAEQLSGSAFTEPRTHNRRSWLYRIRPSAAHPPFTRVDNGALRSAPFTEAAADPNRLRWNPLPAPAPGTDFLAGLWTLGGNGDAAQRSGMAIHLYAANADMTDRVFSDSDGELLIVPERGGLLLRTELGLLAARPGDMALIPRGVRFRVELLDADARGYVCENYGQPFELPNLGPIGANGLAAARDFQAPVAAYEDSERPTEVINKFCGNLWSATYDHSPLDVVAWHGSHVPYVYDMRRFNVLGSISYDHPDPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMSEYMGLIEGAYDAKAEGFVPGGGSLHNMMSAHGPDHETFERASAAELKPQKIDDGLAFMFETRWPITATAQAAGADHLQRGYDDVWQGLQRHFRA

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Crispr_ID: NZ_CP020555_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020555_11

6311337-6311431

Orphan

Consensus_repeat	Method
CGTGGGCGGCCAGGGCGGCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020555_11

>merge|NZ_CP020555|11|6311337-6311431|CRISPRCasFinder
CGTCCGGGCCGTGGGCGGCCAGGGCGGCCAGCGCCGCGTCCGTCCACACCCCGCTCGTCGGCGGGTCGGTCTCGTCGGCGGCCAGGGCGGCCAGC

>NZ_CP020555|11|10|6311337-6311431|CRISPRCasFinder
CGTCCGGGCCGTGGGCGGCCAGG	GCGGCCAGCGCCGCGTCCGTCCACACCCCGCTCGTCGGCGGGTCGGTCT
CGTCGGCGGCCAGGGCGGCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020555.1\|WP_030387130.1\|6301426_6301624_-\|DUF1918-domain-containing-protein	unknown	unknown	gnl\|CDD\|378101
NZ_CP020555.1\|WP_030387143.1\|6315611_6316163_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP020555.1\|WP_081524006.1\|6304077_6304656_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP020555.1\|WP_030387149.1\|6322062_6322569_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP020555.1\|WP_081525301.1\|6309814_6310501_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP020555.1\|WP_081524007.1\|6305901_6307059_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP020555.1\|WP_081524010.1\|6315009_6315522_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380121
NZ_CP020555.1\|WP_081524011.1\|6317773_6319249_+\|membrane-associated-oxidoreductase	unknown	unknown	unknown
NZ_CP020555.1\|WP_030010023.1\|6309206_6309743_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|235116
NZ_CP020555.1\|WP_030765574.1\|6319261_6319891_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP020555.1\|WP_030387136.1\|6307055_6307997_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP020555.1\|WP_081524012.1\|6320185_6321367_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176544
NZ_CP020555.1\|WP_030387140.1\|6312102_6313296_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP020555.1\|WP_081524013.1\|6321440_6322025_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP020555.1\|WP_081524008.1\|6307993_6309199_+\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|235112
NZ_CP020555.1\|WP_030387144.1\|6316159_6317704_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_CP020555.1\|WP_030387141.1\|6313423_6314851_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP020555.1\|WP_081524004.1\|6301681_6302602_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP020555.1\|WP_053704343.1\|6304876_6305905_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP020555.1\|WP_081524005.1\|6302600_6304046_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NZ_CP020555.1\|WP_030387130.1\|6301426_6301624_-\|DUF1918-domain-containing-protein	gnl\|CDD\|378101	pfam08940, DUF1918, Domain of unknown function (DUF1918). This domain, found in various hypothetical bacterial proteins, has no known function.	2.5138e-23
NZ_CP020555.1\|WP_030387143.1\|6315611_6316163_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.16122e-06
NZ_CP020555.1\|WP_081524006.1\|6304077_6304656_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	9.26128e-21
NZ_CP020555.1\|WP_030387149.1\|6322062_6322569_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.47906e-13
NZ_CP020555.1\|WP_081525301.1\|6309814_6310501_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.21607e-28
NZ_CP020555.1\|WP_081524007.1\|6305901_6307059_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP020555.1\|WP_081524010.1\|6315009_6315522_-\|hypothetical-protein	gnl\|CDD\|380121	pfam18143, HAD_SAK_2, HAD domain in Swiss Army Knife RNA repair proteins. Family of HAD domain phophoesterases observed in large eukaryotic proteins with predicted role in RNA repair, the so-called 'Swiss Army Knife' repair proteins. May be involved in phosphate group removal during RNA re-ligation.	3.20094e-05
NZ_CP020555.1\|WP_030765574.1\|6319261_6319891_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.31665e-51
NZ_CP020555.1\|WP_030010023.1\|6309206_6309743_+\|arginine-repressor	gnl\|CDD\|235116	PRK03341, PRK03341, arginine repressor; Provisional.	2.33722e-85
NZ_CP020555.1\|WP_030387136.1\|6307055_6307997_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	4.62899e-147
NZ_CP020555.1\|WP_081524012.1\|6320185_6321367_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176544	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.	1.21197e-155
NZ_CP020555.1\|WP_030387140.1\|6312102_6313296_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP020555.1\|WP_081524013.1\|6321440_6322025_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.71451e-12
NZ_CP020555.1\|WP_081524008.1\|6307993_6309199_+\|acetylornithine-transaminase	gnl\|CDD\|235112	PRK03244, argD, acetylornithine transaminase.	0
NZ_CP020555.1\|WP_030387144.1\|6316159_6317704_+\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	7.78652e-104
NZ_CP020555.1\|WP_030387141.1\|6313423_6314851_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP020555.1\|WP_081524004.1\|6301681_6302602_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	8.90675e-10
NZ_CP020555.1\|WP_053704343.1\|6304876_6305905_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	1.48159e-171
NZ_CP020555.1\|WP_081524005.1\|6302600_6304046_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.51751e-96

>NZ_CP020555.1|WP_081525301.1|6309814_6310501_-|L,D-transpeptidase-family-protein
MRTALVTGVTLVAALLPQAPAPLPDRLADTGGGSQLITAVAPSPGSTTGRVIWWERWAGRWHESGSAPARFGANGLTDGATRTQGTNTTPTGLYELPYAFGIRRAPVGTGHAYRRVSADSWWCQDNASAQYNRWVEPLPADCAPGEAEHLVTYEKQYAHALVIGFNYDRPVRGRGAGIFLHVNGKGATAGCVSVPERAMRAILRWADPGRRPHIAIGTESGDLAVTRY
>NZ_CP020555.1|WP_030010023.1|6309206_6309743_+|arginine-repressor
MSQAQDNEQGGQAVPQTRTARHRRIVDILNRQPVRSQSQLAKLLADDGLSVTQATLSRDLDELGAVKIRNTGGELIYAVPSEGGFRTPQAPLGESAKEERMRRLSGELLISAEASANLVVLRTPPGAAQFLASAIDQAELRAILGTIAGDDTLMLISRDPAGGQALADHLLRLAQKES
>NZ_CP020555.1|WP_081524008.1|6307993_6309199_+|acetylornithine-transaminase
MTKGTGNQEYGARWQAALTDNYGTPAVALVRGEGAQVWDADGNQYTDFVGGIAVNALGHAHPAIVAAVTEQISTLGHVSNLFISEPVVALGERLLQLFGRPGKVFFCNSGAESIEAAFKIGRLTGRTHMVATDGGFHGRTMGALALTGQPKKQEPFRPLPGDVTHVPFGDVEALRAAVTEETALVVIEPIQGENGVVVPPAGYLTAAREITRATGTLLVLDEVQTGIGRCGQWFEHQAHEDVEPDIVTLAKGLGGGLPIGAVAAFGPVADLLRPGQHGTTFGGNPVACAAGLAVIDTIATGGLLDQVKARGERLRSGIEATGHSLVSHVRGAGLLLGIVLTEPLAARVQQAAQDAGFLVNAPAPDVVRLMPPYVLTEAEADAFVRALPGILDAAGGDGSGE
>NZ_CP020555.1|WP_030387136.1|6307055_6307997_+|acetylglutamate-kinase
MSDEKAGQPGTSGTARKHTALPKAQILIEALPWLTRHNGKVVVIKFGGNAMIDEDLKAAFAQDVVFLRQAGLKPVVVHGGGPQINAQLDKQGLVSEFKAGLRVTTPEAMDVVRMVLAGHVQRELVGLLNQHGPLAVGMTGEDARTIIATKHSPQIGGESIDIGRVGEITSIDTGAIEALLADGRIPVISSIAGSADDHHVYNVNADTAAAALAAALGAETLMVLTDVEGLYADWPHSDEVISKLTVSELEKLLPDLSSGMVPKMEGCLHAVRNGVNTARVLDGRVQHSILLEIFTDSGIGTMVVPDHQSGGTE
>NZ_CP020555.1|WP_081524007.1|6305901_6307059_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MSVTAAQGFTAAGIAAGIKANGNPDLALVVNNGPRLAAAGVFTSNRVKAAPVHWSEQVLRGGTVSAVVLNSGGANACTGPKGFQDTHATAEKVAQVLGGDFNAGEIAVASTGLIGVLLPMDKLLPGVETAAAALSADGGEDAAIAIKTTDTVHKTATVSRAGWTVGGMAKGAGMLAPGLATMLVVITTDADLDSATLDKALRAATRTTFDRVDSDGCMSTNDTVLLLASGASGQVPAYEDFAEAVRTVCDDLARQLIGDAEGASKDIRIEVIGAASEDDAVEVGRSIARNNLLKCAIHGEDPNWGRVLSAIGTTKAGFDPDRLNVAINGVWVCRNGSVGEDRDLVSMKDREVRITADLANGGESAVIWANDLTAEYVHENSAYSS
>NZ_CP020555.1|WP_053704343.1|6304876_6305905_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MVVRVAVAGASGYAGGEALRLLLSHPEVEIGALTGNSNAGQLLGSLQPHLVPLAGRTLEATTPEVLAGHDVVFLALPHGQSAAVAAQLGDEVLVVDMGADHRLKDSADWDAFYGAPHAGTWPYGLPELPGAREALTGTRRIAVPGCFPTAVSLALFPAYQGGFAEPEAVIVAATGTSGAGKALKPHLLGAEVMGSVTPYGVGGGHRHTPEMVQNLSPLAGERVSVSFTPTLVPMARGILATCSAKALPGTTAESLRAAYEKAYADEPFVHLLPEGQMPSTKSVHGSNAVHVQVAYDESARRIIAISAIDNLTKGTAGGAVQSMNIALGLPEQLGLSTIGVAP
>NZ_CP020555.1|WP_081524006.1|6304077_6304656_+|histidine-phosphatase-family-protein
MHVRVSLVAAARSSSLLAERFDDDRPLDGAGWRAVESAARGLVPLGSAELRYCSPTPRSRATGEALGYAPLAQPALRECDMGRWRGLTLAEVAAHEPGAVELWLSDPRSAPHGGESLLAFISRVGGWLDTRPADDGGAIVAVAEPSVVRAALVYALKAPPLTYWNVDVRPLSTMTLTGWSGRWYLSLQPAPA
>NZ_CP020555.1|WP_081524005.1|6302600_6304046_+|PLP-dependent-aminotransferase-family-protein
MYERSSVAELAESLRSELNRYSIGGKLPSSRALVERYRVSPVTVSRALAQLAAEGLVVTRPGAGVFRAAPRTAAPAAGDTSWQEVALSAEGAGDIVPRSVDATGVLGSLAAPPPGVIELNGGYLHPSLQPERAMAAALARAGRRPGAWGRPPLEGLPELRDWFAREIGGALVAADVLITAGGQSALATALRALAPPGAPILVESPTYPGLLAIARASGCRPVPVPVDAEGVRPELLAAAFEATGARVFVCQPLFQNPTGAVLAPGRRAEVLRIARAAGAFVVEDDYARALAHEDAGPLPATLAAEDADGVVVHVRSLTKSTSPSLRVGALAARGPVVDRLRAIQIVDSFFVPRPLQEAALELVGAPAWPRHLRTVAAELRHRREVLAGALRRELPALELPHLPSGGYQLWVRPAGGGDDTAFAAAALRAGVAVAPGRPYFCAEPPGPYVRLSFAGVAGPGELVEAARRLRTGLAEGLGPDA
>NZ_CP020555.1|WP_081524004.1|6301681_6302602_-|DMT-family-transporter
MTAQNSATLPTTIAVKNPVRRGTALALLGVVAFSLTFPATAWGLESFGPWSLVALRSALAAAIAGAFLLARRVPLPAREHWAGLAVVAAGVVVGFPMLTTLALTTSTTSHAAVVVGLLPLTTAALSAVRTGARPSRAFWAAALAGAAVVLAFVVWDGALAQSGGALSAGDAYLFAALLVCAAGYTEGGRLARMLPGWQVIGWALVLCLPLSLAGSVAGLAYEPVHLGFHGLTGLIWAAAGSTFLGLYVWYRGMAEIGAPRASQLQLAQPLLTLVWSVALLGEHLSPAAPVAACAVLVCIAVTQRVK
>NZ_CP020555.1|WP_030387130.1|6301426_6301624_-|DUF1918-domain-containing-protein
MRATEGDQLVQHGRIVGQHDKVGEITQVLGENGTPPYRVRFQDGHEALMAPGPDCTVRHPAEPPH
>NZ_CP020555.1|WP_030387140.1|6312102_6313296_+|argininosuccinate-synthase
MTERVVLAYSGGLDTSVAIGWIAEETGAEVIAVAVDVGQGGEDLDVIRKRALDCGAVEAEVADASDEFANEYCLPAIKANALYMDRYPLVSALSRPAIVKHLVAAAKKHGATTVAHGCTGKGNDQVRFEAGIVALAPDLKCIAPVRDYAMTRDKAIAFCEEKQLPIATTKKSPYSIDQNVFGRAVETGFLEDIWNAPIEDIYEYTSNPALQREPDEVVISFKEGVPVAIDGKPVSVLQAIQQLNDRAGAQGIGRIDIVEDRLVGIKSREVYEAPGAIALITAHQELENVTVERELARYKRQVEQRWGEMVYDGLWFSPLKRALDGFINEANQHVTGDIRMTLHGGRAVVTGRKSDESLYDFNLATYDSGDTFDQSKAQGFIEIFGLSSKIAARRDLA
>NZ_CP020555.1|WP_030387141.1|6313423_6314851_+|argininosuccinate-lyase
MSSNKGDVRLWGGRFADGPSEALALLSASVHFDWRLAPYDIAGSRAHARVLHKAGLLTAEELDRMIAGLDRLEADVADGSFTGTVADEDVHTALERGLLERLGAELGGKLRAGRSRNDQVATLFRMYLRDHGRIIGGLIADLQDALVGLAETHHDVAMPGRTHLQHAQPVLFAHHVLAHVQSLSRDAERLRQWDTRTAVSPYGSGALAGSSLGLDPEQVAADLGFERGSVGNSIDGTASRDFVAEFAFITAMIGINLSRIAEEIIIWNTKEFSFVTLHDAFSTGSSIMPQKKNPDIAELARGKSGRLIGNLTGLLATLKALPLAYNRDLQEDKEPVFDSCDTLEVLLPAFTGMMATLTVNRERMEELAPAGFSLATDIAEWLVKQGVPFRVAHEVAGECVKVCEGEGIELDQLTDDQFAKISEHLTPEVRTVLNVKGALASRNGRGGTAPSAVAVQLTELKADLVIQHAWAAHKQ
>NZ_CP020555.1|WP_081524010.1|6315009_6315522_-|hypothetical-protein
MKPLLLIDVDGPLNPYAAKAQRRPEGYRTHRMRPTGWTEAERAKPLRVWLNHDHGAELLALADAYELVWATTWKDEANDWIGPHLGLPRLPFVDWPVMHGRAPRGTFWKTQYILEYAGERPFAWIDDDITAMDREYVERHHPAHALLLRIDERIGLVREDFGALAAWAAP
>NZ_CP020555.1|WP_030387143.1|6315611_6316163_+|TetR/AcrR-family-transcriptional-regulator
MAMDRDQVLRDAAALLSRKSTATMDEVARAAGIGRATLHRHFAGRDALVRALEDLGIREFEVAFDNARLDEGTAVEALGRLVAEAEPNAQLLAFLVTENQLFEGDEVNEGWARLDARVGALFRRGQQQGDIRIDLSPAWLTEALYALVGACAWAVMDGRVAAKDFQYMITELLLGGARRSVEK
>NZ_CP020555.1|WP_030387144.1|6316159_6317704_+|MFS-transporter
MSTTQQLNSPSGTETRSRGRWLALSVLVLAVLLVAVDATVLGLATPALSEDLKPSGTQLLWIGDIYSFVIAGLLVSMGSLGDRIGRKKLLLTGAAAFGAVSVLNAYATSPEMMIVARALLGVAGATLMPSTLALIRNIFHDPKERSLAIGIWGATASAGAAVGPVVGGALLQHFWWGSVFLINLPVMIALVVVGIKLLPESKNPVAGPWDLVSVGLSLVGVIGVVYAVKEVATHGVTWEVAVTAAAGAGALYAFVRRQFSLPSPLLDMRLFKHRGFSGAVLADLLTVFGLSGLVFFLSQFLQLVQGRDPLEAGLAELPAAIGAVVTGLIAGRYARRYSVRAIVAGGLGAIGLALGALTLIHKESGYPLLGAALLVVGLGAGFSFTVTADVILSSVPKEQAGSASAVSETAYELGAALGIALLGSIVTGVYQSFTAPASVAGPVADAAHESLGGAVEAAKVLDPHTAQVMVGAAQDAFVDGLRLASGVGAAVLLATAVAAWFLLRGQRLQDGVEH
>NZ_CP020555.1|WP_081524011.1|6317773_6319249_+|membrane-associated-oxidoreductase
MEINELTPAERRVWEAFPRGDGVDFRTAPEDSSADGADWGPGRTLRAEFLRAVLLGACPTVQGRVPGLKIKGAKIVGKLDLRYAVIDHPIRLRDCWFERKPLIYGAQLRALVLSDSTLPGLTASTVRVEVVLRLSCCRIAGPVRLQGAKISGGLFLQGAVIGPTGGEEADEPPLQLNHVEVDTDIIANDLTVHGQLRLNGCTVGGQIQLDRARLLAPGAIALHAENLTVGTDLRGHRLKARGTVNLTGSRIPGQANLTRADLDNTGGTALRASSCAIGELWLRRCDQIRGDVNLRRSTIDLLHIDPEAWPARIAIDGLTYRTLAPHLPAEQRLPALEREESGYLTYAYEQLTAAYRTAGDETAARTVQLAKLRRHRGTLPRPARVWGLLQDATVGYGFRPLRAAGWLLALLMTGTLAYGFEPPRALKAGEAPDFNALFYTIDLMVPIVSFGQEAAFAPGGWYQWLSYLLIVTGWILATTTAAGISRSLQRQ
>NZ_CP020555.1|WP_030765574.1|6319261_6319891_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MRMMFRTRVEGIENIPGSGPVILAGNHLTFIDSMILPLVCDRTVHFIGKDEYVTGKGIKGRAMAWFFTGSGMIPVDRDGANGGVAALMTGRRILEEGKIFGIYPEGTRSPDGRLYRGRTGIARLTLMTGAPVVPFAMIGTDKLQPGGAGMPRPGRVTVRFGEPMEFSRYEGMDRDRYVLRAVTDSVMAEVMRLSGQEYVDMYATKAKAA
>NZ_CP020555.1|WP_081524012.1|6320185_6321367_+|glycerophosphodiester-phosphodiesterase
MTQGGAARRTVLGAAVLAAGTGITGLAAGSASAAGDGYGDGHGGGDGGFRDLPYPTVIGHRGASGYRPEHTLGSYQLALDLGADVIEQDLVPTRDGQLVCRHENEIGGTTDVADHPEFASRRTTKTVDGVSVTGWFTEDLTLAELRTLRAKERIPAVRQRNTLYDGQWAVPTFEEVLRWADREGRRRGRRVWLHVETKHPTYFRGLGLGLEEPLAKLLRRYGRDGRNAAVFLQSFEPSSIQRLSRLVSAPRVVLLSAASTRPWDFEVAKDPRTVADLVKPEGLKWIAGFAQGIGPTMDLILPRDAAGGLGAPTTLVKDAHARGLLLHPYTARNENSFLPAEYRKGTDPTAYGNALAAFRTYFEQGIDGIFTDNPDTGLLAAEAFRPGRRPVNR
>NZ_CP020555.1|WP_081524013.1|6321440_6322025_+|sigma-70-family-RNA-polymerase-sigma-factor
MDLLKAEYLDKLGPLLSAEAAAEAPGAGVDAADLEQAVWVRLLESGRRAPDPAEPAEPARWLRRAVRAEARLARRRARREVPYDHRRTAGEGHRRPSADGGPPAGTAAGAAPEDALMHGEENRALRSAVARLPGRCPELMKALLSPRDLTYREIAGELGISQGSLGPVRSRCLGCLRRMLAAEVAAPGLRGKER
>NZ_CP020555.1|WP_030387149.1|6322062_6322569_+|GNAT-family-N-acetyltransferase
MGMSVTISAAAAEDAEQIFKLQYLAFQREAELYGNYLIQPLTQSLDSLKGELATDTVLVARLGDEIVGTVRGNVDEDGTAKIAKLCVHPRLQGHGLGARLLRAVEEALASPGTTNRFRLHTGHKSESNLRLYRKAGYVQVGGRTASDGVQLVILEKEAKDPTDFTVSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	3228049-3228076	0	1.0
NZ_CP020555_8	8.1\|5172607\|16\|NZ_CP020555\|CRISPRCasFinder	5172607-5172622	16	NZ_CP020555.1	1271156-1271171	0	1.0
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	6426159-6426186	1	0.964
NZ_CP020555_4	4.1\|3358396\|33\|NZ_CP020555\|CRISPRCasFinder	3358396-3358428	33	NZ_CP020555.1	6121377-6121409	1	0.97
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5082899-5082926	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5297945-5297972	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5297976-5298003	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5298007-5298034	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5616448-5616475	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5651160-5651187	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	6426188-6426215	2	0.929
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP020555.1	5616354-5616381	2	0.929

1. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 3228049-3228076, mismatch: 0, identity: 1.0

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacttccagcctcgccggcgtttgaggc	Protospacer
****************************

2. spacer 8.1|5172607|16|NZ_CP020555|CRISPRCasFinder matches to position: 1271156-1271171, mismatch: 0, identity: 1.0

tggggcgtggggcgtg	CRISPR spacer
tggggcgtggggcgtg	Protospacer
****************

3. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 6426159-6426186, mismatch: 1, identity: 0.964

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cactttcagcctcgccggcgtttgaggc	Protospacer
*****.**********************

4. spacer 4.1|3358396|33|NZ_CP020555|CRISPRCasFinder matches to position: 6121377-6121409, mismatch: 1, identity: 0.97

gagcccggcacaccgccgcgagccgcacaccgc	CRISPR spacer
gagcccggcacaccaccgcgagccgcacaccgc	Protospacer
**************.******************

5. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5082899-5082926, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cactttcagcctcgccggcgattgaggc	Protospacer
*****.************** *******

6. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5297945-5297972, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacctccagccccgccggcgtttgaggc	Protospacer
***.*******.****************

7. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5297976-5298003, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacctccagccccgccggcgtttgaggc	Protospacer
***.*******.****************

8. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5298007-5298034, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacctccagccccgccggcgtttgaggc	Protospacer
***.*******.****************

9. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5616448-5616475, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacattcagcctcgccggcgtttgaggc	Protospacer
*** *.**********************

10. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5651160-5651187, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacatcaagcctcgccggcgtttgaggc	Protospacer
*** ** *********************

11. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 6426188-6426215, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cactttcagcctcgccggcgcttgaggc	Protospacer
*****.**************.*******

12. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to position: 5616354-5616381, mismatch: 2, identity: 0.929

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacatccagccccgccggcgtttgaggc	Protospacer
*** *******.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020555_6	6.2\|4257299\|25\|NZ_CP020555\|CRT	4257299-4257323	25	MT936332	Streptomyces phage phiRKBJ001, complete genome	24095-24119	2	0.92
NZ_CP020555_6	6.4\|4257431\|25\|NZ_CP020555\|CRT	4257431-4257455	25	MT936332	Streptomyces phage phiRKBJ001, complete genome	24095-24119	2	0.92
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	474236-474260	3	0.88
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	465553-465577	3	0.88
NZ_CP020555_6	6.2\|4257299\|25\|NZ_CP020555\|CRT	4257299-4257323	25	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	73328-73352	3	0.88
NZ_CP020555_6	6.2\|4257299\|25\|NZ_CP020555\|CRT	4257299-4257323	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	583326-583350	3	0.88
NZ_CP020555_6	6.2\|4257299\|25\|NZ_CP020555\|CRT	4257299-4257323	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1229749-1229773	3	0.88
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	474236-474260	3	0.88
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	465553-465577	3	0.88
NZ_CP020555_6	6.4\|4257431\|25\|NZ_CP020555\|CRT	4257431-4257455	25	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	73328-73352	3	0.88
NZ_CP020555_6	6.4\|4257431\|25\|NZ_CP020555\|CRT	4257431-4257455	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	583326-583350	3	0.88
NZ_CP020555_6	6.4\|4257431\|25\|NZ_CP020555\|CRT	4257431-4257455	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1229749-1229773	3	0.88
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	474236-474260	3	0.88
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	465553-465577	3	0.88
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	534954-534978	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	88168-88192	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1057135-1057159	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	755997-756021	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	58315-58339	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	NC_027204	Sinorhizobium phage phiM12, complete genome	59172-59196	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	KR052482	Sinorhizobium phage phiN3, complete genome	61743-61767	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	KR052481	Sinorhizobium phage phiM19, complete genome	56821-56845	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	KR052480	Sinorhizobium phage phiM7, complete genome	56564-56588	4	0.84
NZ_CP020555_6	6.2\|4257299\|25\|NZ_CP020555\|CRT	4257299-4257323	25	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	319439-319463	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	534954-534978	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	88168-88192	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1057135-1057159	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	755997-756021	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	58315-58339	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	NC_027204	Sinorhizobium phage phiM12, complete genome	59172-59196	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	KR052482	Sinorhizobium phage phiN3, complete genome	61743-61767	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	KR052481	Sinorhizobium phage phiM19, complete genome	56821-56845	4	0.84
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	KR052480	Sinorhizobium phage phiM7, complete genome	56564-56588	4	0.84
NZ_CP020555_6	6.4\|4257431\|25\|NZ_CP020555\|CRT	4257431-4257455	25	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	319439-319463	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	534954-534978	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	88168-88192	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1057135-1057159	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	755997-756021	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	58315-58339	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	NC_027204	Sinorhizobium phage phiM12, complete genome	59172-59196	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	KR052482	Sinorhizobium phage phiN3, complete genome	61743-61767	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	KR052481	Sinorhizobium phage phiM19, complete genome	56821-56845	4	0.84
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	KR052480	Sinorhizobium phage phiM7, complete genome	56564-56588	4	0.84
NZ_CP020555_6	6.1\|4257233\|25\|NZ_CP020555\|CRT	4257233-4257257	25	CP054924	Verrucosispora sp. NA02020 plasmid unnamed, complete sequence	18341-18365	5	0.8
NZ_CP020555_6	6.3\|4257365\|25\|NZ_CP020555\|CRT	4257365-4257389	25	CP054924	Verrucosispora sp. NA02020 plasmid unnamed, complete sequence	18341-18365	5	0.8
NZ_CP020555_6	6.5\|4257497\|25\|NZ_CP020555\|CRT	4257497-4257521	25	CP054924	Verrucosispora sp. NA02020 plasmid unnamed, complete sequence	18341-18365	5	0.8
NZ_CP020555_1	1.1\|1224023\|31\|NZ_CP020555\|CRISPRCasFinder	1224023-1224053	31	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	137727-137757	6	0.806
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP026305	Streptomyces lunaelactis strain MM109 plasmid pSLUN1, complete sequence	7604-7631	6	0.786
NZ_CP020555_2	2.1\|1822329\|28\|NZ_CP020555\|CRISPRCasFinder	1822329-1822356	28	NZ_CP014169	Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence	138971-138998	6	0.786
NZ_CP020555_10	10.1\|6155364\|28\|NZ_CP020555\|CRISPRCasFinder	6155364-6155391	28	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	598652-598679	6	0.786
NZ_CP020555_1	1.1\|1224023\|31\|NZ_CP020555\|CRISPRCasFinder	1224023-1224053	31	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	143351-143381	7	0.774
NZ_CP020555_1	1.1\|1224023\|31\|NZ_CP020555\|CRISPRCasFinder	1224023-1224053	31	NC_031237	Gordonia phage Obliviate, complete genome	22576-22606	7	0.774
NZ_CP020555_10	10.1\|6155364\|28\|NZ_CP020555\|CRISPRCasFinder	6155364-6155391	28	CP000876	Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence	285022-285049	7	0.75
NZ_CP020555_1	1.1\|1224023\|31\|NZ_CP020555\|CRISPRCasFinder	1224023-1224053	31	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	724314-724344	8	0.742
NZ_CP020555_1	1.1\|1224023\|31\|NZ_CP020555\|CRISPRCasFinder	1224023-1224053	31	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	25788-25818	8	0.742
NZ_CP020555_4	4.1\|3358396\|33\|NZ_CP020555\|CRISPRCasFinder	3358396-3358428	33	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	888740-888772	8	0.758
NZ_CP020555_4	4.1\|3358396\|33\|NZ_CP020555\|CRISPRCasFinder	3358396-3358428	33	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	79095-79127	10	0.697

1. spacer 6.2|4257299|25|NZ_CP020555|CRT matches to MT936332 (Streptomyces phage phiRKBJ001, complete genome) position: , mismatch: 2, identity: 0.92

cgctccggtggcgaccgtc-cggccg	CRISPR spacer
cgctccggtggcgaccgtcacggtc-	Protospacer
******************* ***.*

2. spacer 6.4|4257431|25|NZ_CP020555|CRT matches to MT936332 (Streptomyces phage phiRKBJ001, complete genome) position: , mismatch: 2, identity: 0.92

cgctccggtggcgaccgtc-cggccg	CRISPR spacer
cgctccggtggcgaccgtcacggtc-	Protospacer
******************* ***.*

3. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

4. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

5. spacer 6.2|4257299|25|NZ_CP020555|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgcaccggtggcgcccgtccggccc	Protospacer
*** ********* **********

6. spacer 6.2|4257299|25|NZ_CP020555|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgctccggtggcgcccgttcggcag	Protospacer
************* ****.**** *

7. spacer 6.2|4257299|25|NZ_CP020555|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgctccggtggcgcccgttcggcag	Protospacer
************* ****.**** *

8. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

9. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

10. spacer 6.4|4257431|25|NZ_CP020555|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgcaccggtggcgcccgtccggccc	Protospacer
*** ********* **********

11. spacer 6.4|4257431|25|NZ_CP020555|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgctccggtggcgcccgttcggcag	Protospacer
************* ****.**** *

12. spacer 6.4|4257431|25|NZ_CP020555|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.88

cgctccggtggcgaccgtccggccg	CRISPR spacer
cgctccggtggcgcccgttcggcag	Protospacer
************* ****.**** *

13. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

14. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 3, identity: 0.88

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
caccgagacgaccgtcgtggcgacc	Protospacer
 **** ********* *********

15. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gttcgtgacgaccctggtggcgacc	Protospacer
. .********** ***********

16. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgacgaccgtggtggccacc	Protospacer
..** **************** ***

17. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

18. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

19. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgaccaccgtggtggcgacc	Protospacer
..** **** ***************

20. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to NC_027204 (Sinorhizobium phage phiM12, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

21. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

22. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to KR052481 (Sinorhizobium phage phiM19, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

23. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to KR052480 (Sinorhizobium phage phiM7, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

24. spacer 6.2|4257299|25|NZ_CP020555|CRT matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 4, identity: 0.84

cgctccggtggcgaccgtccggccg	CRISPR spacer
gacaccggtggcgaccgtccgtccg	Protospacer
 .* ***************** ***

25. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gttcgtgacgaccctggtggcgacc	Protospacer
. .********** ***********

26. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgacgaccgtggtggccacc	Protospacer
..** **************** ***

27. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

28. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

29. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgaccaccgtggtggcgacc	Protospacer
..** **** ***************

30. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to NC_027204 (Sinorhizobium phage phiM12, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

31. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

32. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to KR052481 (Sinorhizobium phage phiM19, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

33. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to KR052480 (Sinorhizobium phage phiM7, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

34. spacer 6.4|4257431|25|NZ_CP020555|CRT matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 4, identity: 0.84

cgctccggtggcgaccgtccggccg	CRISPR spacer
gacaccggtggcgaccgtccgtccg	Protospacer
 .* ***************** ***

35. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gttcgtgacgaccctggtggcgacc	Protospacer
. .********** ***********

36. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgacgaccgtggtggccacc	Protospacer
..** **************** ***

37. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

38. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
gaccgtggcgtccgtggtggcgacg	Protospacer
.******.** *************

39. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccctgaccaccgtggtggcgacc	Protospacer
..** **** ***************

40. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to NC_027204 (Sinorhizobium phage phiM12, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

41. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

42. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to KR052481 (Sinorhizobium phage phiM19, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

43. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to KR052480 (Sinorhizobium phage phiM7, complete genome) position: , mismatch: 4, identity: 0.84

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
aaccgtgacaaccgtgttggcgaaa	Protospacer
*********.****** ******

44. spacer 6.1|4257233|25|NZ_CP020555|CRT matches to CP054924 (Verrucosispora sp. NA02020 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccgtgacgaccatggtggcgatg	Protospacer
..***********.*********.

45. spacer 6.3|4257365|25|NZ_CP020555|CRT matches to CP054924 (Verrucosispora sp. NA02020 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccgtgacgaccatggtggcgatg	Protospacer
..***********.*********.

46. spacer 6.5|4257497|25|NZ_CP020555|CRT matches to CP054924 (Verrucosispora sp. NA02020 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

aaccgtgacgaccgtggtggcgacc	CRISPR spacer
ggccgtgacgaccatggtggcgatg	Protospacer
..***********.*********.

47. spacer 1.1|1224023|31|NZ_CP020555|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 6, identity: 0.806

ggtgcgaccgggcccggtcgggacgcggccg	CRISPR spacer
ggtgatggcgggcctgttcgggacgcggccg	Protospacer
****  . ******.* **************

48. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to NZ_CP026305 (Streptomyces lunaelactis strain MM109 plasmid pSLUN1, complete sequence) position: , mismatch: 6, identity: 0.786

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
gcaatcaagcctcgtcggcgtttgaggc	Protospacer
    ** *******.*************

49. spacer 2.1|1822329|28|NZ_CP020555|CRISPRCasFinder matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cacttccagcctcgccggcgtttgaggc	CRISPR spacer
cacttccggcctcgccggcgtctgtaag	Protospacer
*******.*************.** ..

50. spacer 10.1|6155364|28|NZ_CP020555|CRISPRCasFinder matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 6, identity: 0.786

tgggtcggcagggccgttgtcgggagtt	CRISPR spacer
ctgctcggcagggccgctgtcgggcgtg	Protospacer
. * ************.******* **

51. spacer 1.1|1224023|31|NZ_CP020555|CRISPRCasFinder matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 7, identity: 0.774

ggtgcgaccgggcccggtcgggacgcggccg	CRISPR spacer
tggtccaccgggccaggtcgggacgcagcag	Protospacer
 *  * ******** ***********.** *

52. spacer 1.1|1224023|31|NZ_CP020555|CRISPRCasFinder matches to NC_031237 (Gordonia phage Obliviate, complete genome) position: , mismatch: 7, identity: 0.774

-ggtgcgaccgggcccggtcgggacgcggccg	CRISPR spacer
cggcac-cccgggcccggtcgggccgccgccc	Protospacer
 **..*  *************** *** ***

53. spacer 10.1|6155364|28|NZ_CP020555|CRISPRCasFinder matches to CP000876 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence) position: , mismatch: 7, identity: 0.75

tgggtcggcagggccgttgtcgggagtt	CRISPR spacer
gccgttggcagggccgttgtctggagca	Protospacer
   **.*************** ****.

54. spacer 1.1|1224023|31|NZ_CP020555|CRISPRCasFinder matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 8, identity: 0.742

ggtgcgaccgggcccggtcgggacgcggccg	CRISPR spacer
cgtgcggccgggcccggtcgtgacgctttat	Protospacer
 *****.************* *****  .

55. spacer 1.1|1224023|31|NZ_CP020555|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 8, identity: 0.742

ggtgcgaccgggcccggtcgggacgcggccg	CRISPR spacer
gacgtacgcgggcaccgtcgggacgcggccg	Protospacer
*..*..  ***** * ***************

56. spacer 4.1|3358396|33|NZ_CP020555|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.758

gagcccggcacaccgccgcgagccgcacaccgc	CRISPR spacer
ccgcccggcacgccgccgcaagccgctgatggc	Protospacer
  *********.*******.******  *. **

57. spacer 4.1|3358396|33|NZ_CP020555|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

gagcccggcacaccgccgcgagccgcacaccgc	CRISPR spacer
gagcccggcacaccaccgcgcgccacctgttct	Protospacer
**************.***** ***.* .... .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31032 : 75111

Agrobacterium_phage(66.67%)

protease,transposase,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081521111.1\|31032_31611_-\|protease	snapalysin family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_081521112.1\|31930_32182_+	hypothetical protein	NA	NA	NA	NA
WP_159396238.1\|32425_32950_+\|transposase	transposase	NA	NA	NA	NA
WP_107475652.1\|35101_35773_+	hypothetical protein	NA	NA	NA	NA
WP_081521115.1\|36491_37154_-	hypothetical protein	NA	NA	NA	NA
WP_081521116.1\|37329_37857_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_081521117.1\|37772_38228_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_081521118.1\|38638_39079_+	cupin domain-containing protein	NA	NA	NA	NA
WP_081521119.1\|39202_39529_-	hypothetical protein	NA	NA	NA	NA
WP_030390123.1\|40329_40881_+	hypothetical protein	NA	NA	NA	NA
WP_053177368.1\|41829_42408_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_081521120.1\|42499_42946_+	DUF1772 domain-containing protein	NA	NA	NA	NA
WP_081521121.1\|43228_43498_+	hypothetical protein	NA	NA	NA	NA
WP_159396239.1\|43805_44447_-	response regulator	NA	NA	NA	NA
WP_081521123.1\|45274_45913_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.6e-39	43.6
WP_030390118.1\|45914_46517_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-37	41.5
WP_081521124.1\|46619_47042_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081521125.1\|47388_48486_-	esterase	NA	NA	NA	NA
WP_081521126.1\|48660_49251_-	hypothetical protein	NA	NA	NA	NA
WP_078626721.1\|49468_49642_-	CsbD family protein	NA	NA	NA	NA
WP_030390112.1\|49735_49918_-	hypothetical protein	NA	NA	NA	NA
WP_081521127.1\|50146_50923_+	hypothetical protein	NA	NA	NA	NA
WP_053177356.1\|51388_51736_-	hypothetical protein	NA	NA	NA	NA
WP_159062018.1\|52005_52695_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081521128.1\|52769_53186_-	hypothetical protein	NA	NA	NA	NA
WP_053177354.1\|55916_56342_-	hypothetical protein	NA	NA	NA	NA
WP_159396240.1\|56338_57109_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_081521130.1\|57105_57885_-	hypothetical protein	NA	NA	NA	NA
WP_081521131.1\|58178_58514_-	winged helix-turn-helix transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.0e-07	37.3
WP_107475430.1\|58704_59952_+	PH domain-containing protein	NA	NA	NA	NA
WP_030390101.1\|60408_61500_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_159396241.1\|61589_63344_-	PKD domain-containing protein	NA	NA	NA	NA
WP_081521133.1\|63527_64136_-	cadmium transporter	NA	NA	NA	NA
WP_081521134.1\|64179_65970_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_081521135.1\|66000_67920_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_081521136.1\|67916_69836_-	hypothetical protein	NA	NA	NA	NA
WP_159396242.1\|70015_71212_-	hypothetical protein	NA	NA	NA	NA
WP_107475431.1\|71256_74400_-	hypothetical protein	NA	NA	NA	NA
WP_030390517.1\|74713_74896_-\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_030390516.1\|74922_75111_-\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_2

3558628 : 3594195

Acanthamoeba_polyphaga_moumouvirus(25.0%)

protease,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030388094.1\|3558628_3559225_+\|protease	rhomboid family intramembrane serine protease	L7RCY0	Acanthamoeba_polyphaga_moumouvirus	1.0e-05	28.9
WP_107085048.1\|3559309_3560230_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_081522734.1\|3560229_3560706_-	hypothetical protein	NA	NA	NA	NA
WP_030388091.1\|3560702_3562157_-	menaquinone biosynthesis decarboxylase	NA	NA	NA	NA
WP_081522735.1\|3562247_3562544_+	hypothetical protein	NA	NA	NA	NA
WP_107475523.1\|3562590_3563025_-	cupin	NA	NA	NA	NA
WP_078626518.1\|3563113_3563518_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_053704323.1\|3563546_3564050_-	hypothetical protein	NA	NA	NA	NA
WP_081522737.1\|3564075_3565173_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
WP_081522738.1\|3565169_3566882_-	cytochrome c biogenesis protein ResB	NA	NA	NA	NA
WP_030388084.1\|3566895_3567669_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_079405774.1\|3567673_3568300_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_081525116.1\|3568387_3569623_-	hypothetical protein	NA	NA	NA	NA
WP_030388081.1\|3569813_3570518_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_030388080.1\|3570514_3571837_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_078626517.1\|3571970_3572570_+	hypothetical protein	NA	NA	NA	NA
WP_081525117.1\|3573274_3574627_-	hydrolytic protein	NA	NA	NA	NA
WP_081522740.1\|3574831_3575515_+	response regulator transcription factor	NA	NA	NA	NA
WP_081522741.1\|3575725_3578893_+	hypothetical protein	NA	NA	NA	NA
WP_081522742.1\|3578889_3579594_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_081525118.1\|3579668_3581702_+	AAA family ATPase	A0A0R6PCP6	Moraxella_phage	4.0e-22	32.2
WP_030388074.1\|3581874_3583434_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	3.4e-69	34.1
WP_030388073.1\|3583472_3583913_+\|tail	phage tail protein	NA	NA	NA	NA
WP_030388072.1\|3583909_3584413_+	hypothetical protein	NA	NA	NA	NA
WP_081522743.1\|3584572_3587764_+	hypothetical protein	NA	NA	NA	NA
WP_030388071.1\|3587798_3588224_+\|tail	phage tail protein	NA	NA	NA	NA
WP_030388070.1\|3588325_3589051_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_030388069.1\|3589047_3590865_+	VgrG-related protein	NA	NA	NA	NA
WP_030388068.1\|3590916_3591234_+	hypothetical protein	NA	NA	NA	NA
WP_030388067.1\|3591233_3591656_+	GPW/gp25 family protein	A0A1D8KT65	Synechococcus_phage	1.7e-07	30.8
WP_081522744.1\|3591655_3593635_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_053169659.1\|3593631_3594195_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_3

6077482 : 6084506

Streptomyces_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081523901.1\|6077482_6078115_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.1e-10	29.9
WP_053702668.1\|6078114_6079503_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_053702667.1\|6079649_6080267_+	nicotinamide mononucleotide transporter	A0A0F6YPU8	Sinorhizobium_phage	1.3e-13	32.1
WP_081523902.1\|6080263_6081343_+	AAA family ATPase	A0A2K8HHU5	Bacteriophage	1.9e-31	30.6
WP_081523903.1\|6081339_6082068_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	6.0e-21	45.7
WP_081523904.1\|6082064_6083075_+	ADP-ribosylglycohydrolase family protein	G3M9X5	Bacillus_virus	6.4e-05	27.5
WP_081523905.1\|6083078_6083837_+	nucleotidyltransferase	K4K696	Caulobacter_phage	1.5e-06	39.2
WP_081523906.1\|6083825_6084506_-	nucleotidyltransferase	A0A1J0GW18	Streptomyces_phage	2.1e-15	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9792 : 53509

Salmonella_phage(20.0%)

integrase,transposase,tail

attL 52118:52135|attR 59689:59706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081525438.1\|9792_10983_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_159396452.1\|11253_14286_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.6e-112	32.2
WP_159396453.1\|14237_15500_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_159396454.1\|15516_15909_+	recombinase family protein	A0A219YB42	Aeromonas_phage	7.0e-08	35.7
WP_081525442.1\|16011_17676_-	hypothetical protein	NA	NA	NA	NA
WP_081525443.1\|17925_18270_+	hypothetical protein	NA	NA	NA	NA
WP_107475781.1\|18321_21768_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_081525444.1\|22414_23224_-	hypothetical protein	NA	NA	NA	NA
WP_081525445.1\|23232_24408_-	cupin	A0A1D7SFD0	Cyanophage	3.6e-07	27.0
WP_158714804.1\|26224_26386_-	hypothetical protein	NA	NA	NA	NA
WP_031152865.1\|27174_28521_-	hypothetical protein	NA	NA	NA	NA
WP_081525446.1\|28683_28911_+	hypothetical protein	NA	NA	NA	NA
WP_051893287.1\|29356_29968_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_051893288.1\|29973_31635_+	hypothetical protein	NA	NA	NA	NA
WP_031152877.1\|31799_32321_+	hypothetical protein	NA	NA	NA	NA
WP_031152879.1\|32720_33965_+	hypothetical protein	NA	NA	NA	NA
WP_081525447.1\|34252_35554_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_031152886.1\|35550_35793_-	hypothetical protein	NA	NA	NA	NA
WP_081525448.1\|35820_36792_-	hypothetical protein	NA	NA	NA	NA
WP_031152890.1\|36872_37862_-	hypothetical protein	NA	NA	NA	NA
WP_081525449.1\|38039_38750_+	hypothetical protein	NA	NA	NA	NA
WP_081525450.1\|39079_39271_-	hypothetical protein	NA	NA	NA	NA
WP_081525451.1\|39659_40019_-	hypothetical protein	NA	NA	NA	NA
WP_081525453.1\|41385_41610_+	hypothetical protein	NA	NA	NA	NA
WP_081525454.1\|41844_42315_-\|tail	lamin tail domain-containing protein	NA	NA	NA	NA
WP_081525455.1\|42779_43868_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.7e-14	35.0
WP_081525456.1\|43985_44615_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_159396455.1\|44419_48271_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_081525458.1\|48343_48688_-	hypothetical protein	NA	NA	NA	NA
WP_081525515.1\|48895_52033_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	3.5e-190	39.7
52118:52135	attL	NA	NA	NA	NA
WP_081525459.1\|52390_53509_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081525459.1\|52390_53509_+\|integrase	site-specific integrase	NA	NA	NA	NA
59689:59706	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020555

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020556

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection