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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020559 Clostridium formicaceticum strain DSM 92 chromosome, complete genome 5 crisprs csa3,WYL,cas14j,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,RT,DinG,DEDDh,cas7,cas8b2,cas14k,Cas14u_CAS-V,c2c9_V-U4,PD-DExK 0 9 13 0

Results visualization

1. NZ_CP020559
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020559_1 1347744-1348827 TypeI-B II-B
16 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020559_2 2530794-2532610 Unclear NA
27 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020559_3 3005799-3005891 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020559_4 3611877-3611939 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020559_5 4056365-4056456 TypeV NA
1 spacers
cas14k

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020559_1 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348434-1348469 36 NZ_CP013332 Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence 1050-1085 7 0.806
NZ_CP020559_1 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348500-1348535 36 NZ_CP013332 Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence 1050-1085 7 0.806
NZ_CP020559_3 3.1|3005831|29|NZ_CP020559|CRISPRCasFinder 3005831-3005859 29 KY290955 Aeromonas phage 65.2, complete genome 192318-192346 7 0.759
NZ_CP020559_3 3.1|3005831|29|NZ_CP020559|CRISPRCasFinder 3005831-3005859 29 NC_015251 Aeromonas phage 65, complete genome 192355-192383 7 0.759
NZ_CP020559_1 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348434-1348469 36 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 73863-73898 8 0.778
NZ_CP020559_1 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348500-1348535 36 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 73863-73898 8 0.778
NZ_CP020559_1 1.13|1348566|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348566-1348601 36 NC_018493 Bacillus cereus FRI-35 plasmid p02, complete sequence 23134-23169 8 0.778
NZ_CP020559_2 2.27|2532545|36|NZ_CP020559|CRISPRCasFinder,CRT 2532545-2532580 36 NC_021709 Alteromonas mediterranea 615 plasmid unnamed, complete sequence 89284-89319 8 0.778
NZ_CP020559_2 2.52|2532548|36|NZ_CP020559|PILER-CR 2532548-2532583 36 NC_021709 Alteromonas mediterranea 615 plasmid unnamed, complete sequence 89284-89319 8 0.778
NZ_CP020559_1 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348036-1348071 36 MK017819 Clostridium phage CPD4, complete genome 2759-2794 9 0.75
NZ_CP020559_1 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348036-1348071 36 MN417334 Clostridium phage CPAS-15, complete genome 6638-6673 9 0.75
NZ_CP020559_1 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348036-1348071 36 KY206887 Clostridium phage Clo-PEP-1, complete genome 44977-45012 9 0.75
NZ_CP020559_1 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348036-1348071 36 MF001357 Clostridium phage CP3, partial genome 36076-36111 9 0.75
NZ_CP020559_1 1.10|1348368|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348368-1348403 36 NZ_CP019175 Salmonella enterica subsp. enterica serovar Give strain CFSAN024229 plasmid pCFSAN024229, complete sequence 47165-47200 10 0.722
NZ_CP020559_1 1.16|1348764|34|NZ_CP020559|CRISPRCasFinder,CRT 1348764-1348797 34 MH622943 Myoviridae sp. isolate ctbc_4, complete genome 337301-337334 10 0.706
NZ_CP020559_1 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348434-1348469 36 KJ010548 Bacillus phage Bp8p-T, complete genome 148296-148331 11 0.694
NZ_CP020559_1 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348434-1348469 36 NC_029121 Bacillus phage Bp8p-C, complete genome 148294-148329 11 0.694
NZ_CP020559_1 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348500-1348535 36 KJ010548 Bacillus phage Bp8p-T, complete genome 148296-148331 11 0.694
NZ_CP020559_1 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT 1348500-1348535 36 NC_029121 Bacillus phage Bp8p-C, complete genome 148294-148329 11 0.694

1. spacer 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tgcaattttttcattttaaaactcctcct-tttcata	CRISPR spacer
ttaaattttttcatttaaaaagtcctcctaatttat-	Protospacer
*  ************* **** *******  **.** 

2. spacer 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tgcaattttttcattttaaaactcctcct-tttcata	CRISPR spacer
ttaaattttttcatttaaaaagtcctcctaatttat-	Protospacer
*  ************* **** *******  **.** 

3. spacer 3.1|3005831|29|NZ_CP020559|CRISPRCasFinder matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 7, identity: 0.759

tttcactaataacgtgatcatcaacgctt	CRISPR spacer
tttcactaacaacgtgatcctcaaattcg	Protospacer
*********.********* ****  .. 

4. spacer 3.1|3005831|29|NZ_CP020559|CRISPRCasFinder matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 7, identity: 0.759

tttcactaataacgtgatcatcaacgctt	CRISPR spacer
tttcactaacaacgtgatcctcaaattcg	Protospacer
*********.********* ****  .. 

5. spacer 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
ttccattttttcattttaaaaattctcctttaaaat	Protospacer
* * ***************** *.*******  *  

6. spacer 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
ttccattttttcattttaaaaattctcctttaaaat	Protospacer
* * ***************** *.*******  *  

7. spacer 1.13|1348566|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NC_018493 (Bacillus cereus FRI-35 plasmid p02, complete sequence) position: , mismatch: 8, identity: 0.778

-----atacttttggtacaattttataccaaattacattac	CRISPR spacer
tcaaaaaac-----gtacaatttaatacaaaattacattac	Protospacer
     * **     ********* **** ************

8. spacer 2.27|2532545|36|NZ_CP020559|CRISPRCasFinder,CRT matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

ttttagaagggtgtttttttatgccttttaaaaagg	CRISPR spacer
aatttctatggtgtttttttatgcgtttaaaaaagg	Protospacer
  **   * *************** *** *******

9. spacer 2.52|2532548|36|NZ_CP020559|PILER-CR matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.778

ttttagaagggtgtttttttatgccttttaaaaagg	CRISPR spacer
aatttctatggtgtttttttatgcgtttaaaaaagg	Protospacer
  **   * *************** *** *******

10. spacer 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to MK017819 (Clostridium phage CPD4, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

11. spacer 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

12. spacer 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

13. spacer 1.5|1348036|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to MF001357 (Clostridium phage CP3, partial genome) position: , mismatch: 9, identity: 0.75

tataatcttctagcatttctaagatttcatcaaaat	CRISPR spacer
catcttcttctagcatttctatgatgtcatccttag	Protospacer
.**  **************** *** *****   * 

14. spacer 1.10|1348368|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019175 (Salmonella enterica subsp. enterica serovar Give strain CFSAN024229 plasmid pCFSAN024229, complete sequence) position: , mismatch: 10, identity: 0.722

ccatatttttttctgtaaaaaaacatttctgaatca	CRISPR spacer
cgtctgttttttctgtcaaaaaacatttttgacaaa	Protospacer
*  .  ********** ***********.***   *

15. spacer 1.16|1348764|34|NZ_CP020559|CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 10, identity: 0.706

-----atccttgtttttctagaacttctaatgaaatttg	CRISPR spacer
caatgat-----tttttctagttcttctaatgaaataaa	Protospacer
     **     *********  *************  .

16. spacer 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

17. spacer 1.11|1348434|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

18. spacer 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

19. spacer 1.12|1348500|36|NZ_CP020559|PILER-CR,CRISPRCasFinder,CRT matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 11, identity: 0.694

tgcaattttttcattttaaaactcctccttttcata	CRISPR spacer
tttgttttttccattgtaaaactcctcctttaatcc	Protospacer
* .. *****.**** ***************   . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 431312 : 439964 8 Prochlorococcus_phage(28.57%) NA NA
DBSCAN-SWA_2 744274 : 793181 37 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_3 1664277 : 1672824 17 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_4 1676169 : 1730149 63 Bacillus_phage(19.05%) portal,head,transposase,plate,capsid,integrase,terminase,bacteriocin,tail,protease attL 1695586:1695600|attR 1730399:1730413
DBSCAN-SWA_5 1733964 : 1784855 56 Leptospira_phage(30.0%) portal,tRNA,capsid,transposase NA
DBSCAN-SWA_6 1868279 : 1959053 98 Clostridium_phage(15.15%) portal,head,transposase,plate,integrase,capsid,terminase,tRNA,bacteriocin,tail,protease attL 1891070:1891129|attR 1928534:1928676
DBSCAN-SWA_7 2114008 : 2122624 8 uncultured_Mediterranean_phage(33.33%) protease NA
DBSCAN-SWA_8 2185768 : 2261211 95 Clostridium_phage(23.91%) portal,plate,integrase,tRNA,tail attL 2186112:2186128|attR 2228773:2228789
DBSCAN-SWA_9 3328303 : 3343758 11 Bacillus_phage(62.5%) NA NA
DBSCAN-SWA_10 3611405 : 3660084 49 Leptospira_phage(22.22%) transposase NA
DBSCAN-SWA_11 3683121 : 3694526 13 Thermoanaerobacterium_phage(50.0%) integrase attL 3675141:3675155|attR 3695533:3695547
DBSCAN-SWA_12 4028730 : 4046650 15 Leptospira_phage(100.0%) integrase,transposase attL 4041154:4041169|attR 4046424:4046439
DBSCAN-SWA_13 4523334 : 4573573 44 Streptococcus_phage(25.0%) integrase,transposase,protease attL 4524335:4524394|attR 4566565:4566996
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage