CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020562	Halomonas sp. GT chromosome, complete genome	1 crisprs	DEDDh,csa3,DinG,WYL,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020562_1

1297655-1297754

Orphan

Consensus_repeat	Method
GTTGGAGCGGGAAAGTAGATTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020562_1

>merge|NZ_CP020562|1|1297655-1297754|CRISPRCasFinder
GTTGGAGCGGGAAAGTAGATTCGATCGGACTGGCGTTCCAGCTCACGACCCTCACTTGCTTAACCACGCTGTCCAAGTTGGAGCGGGAAAGGAGATTCGA

>NZ_CP020562|1|1|1297655-1297754|CRISPRCasFinder
GTTGGAGCGGGAAAGTAGATTCGA	TCGGACTGGCGTTCCAGCTCACGACCCTCACTTGCTTAACCACGCTGTCCAA
GTTGGAGCGGGAAAGGAGATTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020562.1\|WP_083002571.1\|1294802_1295096_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NZ_CP020562.1\|WP_083002587.1\|1300399_1301050_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP020562.1\|WP_009722715.1\|1294300_1294597_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|178925
NZ_CP020562.1\|WP_083002578.1\|1297891_1298440_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP020562.1\|WP_083002568.1\|1293851_1294157_-\|LapA-family-protein	unknown	unknown	gnl\|CDD\|377648
NZ_CP020562.1\|WP_083002558.1\|1291377_1291662_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|378965
NZ_CP020562.1\|WP_083007861.1\|1291936_1292635_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP020562.1\|WP_083007863.1\|1306154_1307285_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|130455
NZ_CP020562.1\|WP_083002590.1\|1301478_1302402_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_CP020562.1\|WP_083002550.1\|1287196_1289836_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|236445
NZ_CP020562.1\|WP_083002554.1\|1290001_1291180_+\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
NZ_CP020562.1\|WP_083002596.1\|1305496_1306102_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP020562.1\|WP_038482905.1\|1305167_1305494_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP020562.1\|WP_083007862.1\|1295175_1295454_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020562.1\|WP_038482899.1\|1302623_1302974_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|182759
NZ_CP020562.1\|WP_083002563.1\|1292651_1293851_-\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|236983
NZ_CP020562.1\|WP_083002574.1\|1295430_1297107_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236374
NZ_CP020562.1\|WP_083002593.1\|1303109_1305113_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_CP020562.1\|WP_083002583.1\|1298538_1300353_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP020562.1\|WP_038482913.1\|1307284_1307578_+\|YcgL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377477

Protein	Function_ID	Function_description	E-value
NZ_CP020562.1\|WP_083002571.1\|1294802_1295096_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	4.29783e-23
NZ_CP020562.1\|WP_083002587.1\|1300399_1301050_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	2.24095e-96
NZ_CP020562.1\|WP_009722715.1\|1294300_1294597_-\|integration-host-factor-subunit-beta	gnl\|CDD\|178925	PRK00199, ihfB, integration host factor subunit beta; Reviewed.	1.19219e-58
NZ_CP020562.1\|WP_083007861.1\|1291936_1292635_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	6.87117e-132
NZ_CP020562.1\|WP_083002568.1\|1293851_1294157_-\|LapA-family-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	7.67594e-09
NZ_CP020562.1\|WP_083002558.1\|1291377_1291662_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	9.21507e-22
NZ_CP020562.1\|WP_083002578.1\|1297891_1298440_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	4.6728e-70
NZ_CP020562.1\|WP_083007863.1\|1306154_1307285_+\|ribonuclease-D	gnl\|CDD\|130455	TIGR01388, Ribonuclease_D, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. [Transcription, RNA processing].	1.94268e-96
NZ_CP020562.1\|WP_083002590.1\|1301478_1302402_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_CP020562.1\|WP_083002550.1\|1287196_1289836_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP020562.1\|WP_083002583.1\|1298538_1300353_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP020562.1\|WP_083002596.1\|1305496_1306102_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.05456e-116
NZ_CP020562.1\|WP_038482905.1\|1305167_1305494_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	7.52789e-41
NZ_CP020562.1\|WP_038482899.1\|1302623_1302974_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|182759	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin.	3.06149e-67
NZ_CP020562.1\|WP_083002563.1\|1292651_1293851_-\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|236983	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.	4.43012e-133
NZ_CP020562.1\|WP_083002574.1\|1295430_1297107_-\|L-aspartate-oxidase	gnl\|CDD\|236374	PRK09077, PRK09077, L-aspartate oxidase; Provisional.	0
NZ_CP020562.1\|WP_083002593.1\|1303109_1305113_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP020562.1\|WP_083002554.1\|1290001_1291180_+\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
NZ_CP020562.1\|WP_038482913.1\|1307284_1307578_+\|YcgL-domain-containing-protein	gnl\|CDD\|377477	pfam05166, YcgL, YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.	5.22941e-37

>NZ_CP020562.1|WP_083002574.1|1295430_1297107_-|L-aspartate-oxidase
MSSPISDVLVIGGGVAGLTLALEVADHLSVTLVRPALDDQGASRWAQGGIAAVLSPDDDLDAHVRDTLIAGDGLCDEEAVRFTVTHGPDAIQWLIDNGVPFTPDPDPSARYPYHLTREGGHNARRIIHADDATGRAVVDTLYEKVASHPNIIQRNDLTILHLISDTTGCCIGAEGVDQQQQQQTLLAKHIVLATGGASGLYRHTTTPSPSSGEGMVMAAELGAKLMNLEFQQFHPTCLFDPEGPAFLISEAVRGEGGHLLNEAGHRFMPDIDSRAELAPRDVVARAIDSQIQQSSQGHVWLDISHLGASAIRHHFPTILAHCASRGIDITRQPIPVVPAAHYSCGGVATDHRGATHVTNLYAIGEIAYTGLHGANRMASNSLLECLVYARSCAKHLLTPEKRAQTLPAEPKALLSDTLDAVSPSDQQWSSSSLEILATMRSELRAIMSQYVSIVRSNQGLSIAHNKLSDLEKQLNGIHSEIAEDGSNNAIESTIVGKRRHSESVRLQQALWLAKLTVLAALQRHESRGLHYSIDWPEHQENTAASEMSLDQLSPGTMA
>NZ_CP020562.1|WP_083007862.1|1295175_1295454_+|hypothetical-protein
MLAAAAAILLLGREYRYQPIGELRISKNGNQLSAQWLSEEGELENEQPVTADYVSPWLVGLHVGPQRLWLWPDSLPAQSQRSLRRLCHRPGR
>NZ_CP020562.1|WP_083002571.1|1294802_1295096_+|succinate-dehydrogenase-assembly-factor-2
MNDDTSPAAILRKRLYWHSRRGMWELDLLLIPFLEHRFDELSEDEQLAYQRLIEEEDQDLFGWLMRREWPEEPALKRIVQMIVEHAENTDNSAYRTL
>NZ_CP020562.1|WP_009722715.1|1294300_1294597_-|integration-host-factor-subunit-beta
MTKSELIEQIAMRQPELSAKEVETAVRIILDDMTDALASGGRVEIRGFGSFSLHYREPRVGRNPKTGDPVDLDGKYVPHFKPGKELREQVDASRALGY
>NZ_CP020562.1|WP_083002568.1|1293851_1294157_-|LapA-family-protein
MRWIKGLILAVILLVVLLVGILFAVNNQQTIALNLIWAELPPVSLSVWLLATLALGVILGMLAMLGVYVRLKAQLARSERHNRQQRKELDRLRTQELKELA
>NZ_CP020562.1|WP_083002563.1|1292651_1293851_-|lipopolysaccharide-assembly-protein-LapB
MYDAVLLGVLLAAIAIGFGLGVRHASRRRLRTHDSRPSGLSREYFVGLNYLLNEQPDEAINTFVNALDVNSDTVETHIALGKLFRARGEADKAVSIHQNLLARPALSTSTNEHVQLELARDFMALGVHDRAQRMLRALLDKSVNDIYRQEAKRLLIDLLEREKDWQEALDVAQSLLKQQPGMRRPAAHWLCELAQEEIHQASRALARKHLKKALQLDERCVRATLLLAELEMDNGHYTRAIERLSHIPQQDIAHIPTMLPALQHAYERNNDIQGFETHLYRLLGQAPYTSIIIALGELVHQRDGVDSAIERTGEWLREAPSLGGLDYLIDLYHESQRLSGKTPPDTRLLLLKHHTNALLEGKSRHRCRRCGFASDSLAWQCPSCRRWGTIKPITGVDGE
>NZ_CP020562.1|WP_083007861.1|1291936_1292635_+|orotidine-5'-phosphate-decarboxylase
MATDSPLIIALDYSSLDSALCMADQLDPKRCRVKVGKELFTRSGPAVLEALHGRGFEIFLDLKFHDIPNTVAGAVQAAAEQGVWMVNVHASGGRKMMETAAKRLDDNGLSTHLIAVTVLTSMQAADLHETGIDATPEEHVLRLAALTQQSGLGGVVCSAQEAAQIKSLCGNDFLKVTPGIRPSFAAANDQQRIMTPSDAMRVGSTHLVIGRPVTQAEEPMAALAAIEAELAG
>NZ_CP020562.1|WP_083002558.1|1291377_1291662_-|ComEA-family-DNA-binding-protein
MQTTLKGLLAALLLSLSLGVSSLALAQDIAPIDVNTADAELLAELPGIGPSRAAAIIEERENNGAFTNADDLTRVSGIGPATVDRMRDQVATEE
>NZ_CP020562.1|WP_083002554.1|1290001_1291180_+|2-methylaconitate-cis-trans-isomerase-PrpF
MSHVAQISIPATYMRGGTSKGVFFTLSDLPEAARVPGEARDKLLMRVIGSPDPYEKQIDGMGGATSSTSKTVILSKSESAEHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGPYAIANGLIDPAKVPKNGVAEVRIWQVNIGKTIVSQVPIVNGQVQEAGDFELDGVTFPAAEIPVAFMDPADGEGAIFPTGNLVDELEVPGVGVLKATLINAGIPTVFVNAQDIGYTGCELQEAINSDAKALAMFETIRAHGAVRMGLIKHVDEAASRQHTPKVAFVAPPASYTASSGKAVSEENIDLVVRALSMGKLHHAMMGTAAVAIGAAAAIQGTLVNLAAGGEEREAVTFGHPSGSLRVGAKASLTDGRWQIDQAVMSRSARVLMEGSVRIPGDSF
>NZ_CP020562.1|WP_083002550.1|1287196_1289836_+|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTNYRKPLPGVTAEGAPVDYFDAHQAVEDIKPGAYATLPYTSRVLAEQLVRRCDPALLTDALKQLIERKQDLDFPWYPARVVCHDILGQTALVDLAGLRDAIADKGGDPAKVNPVVPTQLIVDHSLAVEHAGFEKDAFEKNRQVEDRRNDDRFHFINWTKVAFENVDVIPPGNGIMHQINLEKMSPVVQCRPDEQGVHIAYPDTCVGTDSHTPMVDALGVISVGVGGLEAESVMLGRASMMRLPDIVGVELSGKLQPGITSTDMVLAITEFLRKERVVGAYLEFYGEGADALTVGDRATISNMTPEYGATAAMFYIDNQTIDYLKLTGREDEQVALVEAYAKHTGLWADSLKTAEYERILRFDLSSVARTLAGPSNPHAHLPTSELAQRGIAIDLDKARADEQAGRMPDGAVIIAAITSCTNTSNPRNMVAAGLIARNANRLGLTRKPWVKSSLAPGSKTVKMYLEEAKLMDELETLGFGVVAYACTTCNGMSGALDPVIQKEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGTDHDGNPVTLKDIWPDDSEIDAIVKASVKPEQFRQTYIPMFDLDKSARTQVSPLYEWRPQSTYIRRPPYWEGNMAAERGLKGMRPLAILPDNITTDHLSPSNAIMMDSAAGEYLHKMGLPEEDFNSYATHRGDHLTAQRATLANPKLFNEMVHDEQGKVLQGSLARVEPEGTVTRMWEAIETYMARKQPLIIIAGADYGQGSSRDWAAKGVALAGVEAIVAEGFERIHRTNLIGMGVMPLQFEEGTTRKTLALDGTEVFDVEGAPQPRAKLTLVIHRQSGTTERVPVICRIDTAEEVTIYSAGGVLQRFAQDFLESTTA
>NZ_CP020562.1|WP_083002578.1|1297891_1298440_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNIPNILTLARIVFIPLLVVLFYLPFSWSMPVAAGLFALASITDWLDGYLARRWNQSTPFGAFLDPVADKLMVAVALALLIERFDTLVLTLPALVIIGREIVISALREWMAEMGKRGMVAVSWIGKLKTTLQMVALLILLAFPPGHEFALIGVVVLYAAAILTLWSMAQYLKAAWPHLSRSM
>NZ_CP020562.1|WP_083002583.1|1298538_1300353_-|excinuclease-ABC-subunit-UvrC
MTFDAKQFLSSVSASPGVYRMLDEHSNTLYVGKAKRLKARLASYFRGQLNTKTQAMVARIADIQITVTRSETEALLLEQTLIKELRPPYNILLRDDKSYPFVFVTDRHAYPALEYKRARQRRGDGRYLGPYPSSGAVKESLALMQKIFRIRNCEDSVFAHRSRPCLQYQIQRCSAPCVDFISEADYRRDVEHAVMCLEGKSEHVTQLLSEEMETASRALNFEEAARLRDQIQQLRQLQQRQFVDNESGDADVFALAQRPGALGVSILSVRDGRLLGARHHTPKNDLDLPPDMLLTEVVSQYYFGQPHNVPSEVITSHPLADSALIADALSQQAGKRVRVTSQVRGHRAQWQHLAMTNAEQQLASQLANKTQLIQRFEALQKALSLDKIPERLECFDISHSHGEATVASCVVFDHQGPRKSDYRHFRIEGVAAGDDYAAMQQALTRRLKRVKSGEAVAPDILIVDGGKGQLNMARGVLTELAVTDIILLGVAKGTTRKAGLETLFLETTDNPLPLDPASPALHLIQHIRDESHRFAIAGHRAQRDKARRTSTLQDIPGIGPKRRRELLRFFGGLQGVQKASRDELARVPGINASLAETIYQSLNG
>NZ_CP020562.1|WP_083002587.1|1300399_1301050_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MIKVLIADDHHLVRTSIAHLLNEECDIKVVGEVDDGESAVAQCRRLKPDIVVMDIRMPGIGGLEATRRIQRTMEDVKVLILTAHMEDSALRLMLEAGAIGFLSKGADITEMTDAIRQVFHGKRYVSKEIAQRLALSHFTDEDNPFRHLSHRELQIALMIVNCQRVQDISDRLHLSPKTVNTYRYRLFDKLEVATDVELTHLALRHGLVEGFDAMLG
>NZ_CP020562.1|WP_083002590.1|1301478_1302402_-|ornithine-carbamoyltransferase
MATRHFLTLLDLTPDELAYLIQRAIKIKTELKANGPTYTPLPNRTLAMIFEKSSTRTRVSFETGMAQFGGHALFLSPRDTQLGRGEPIEDTARVLSEMVDAVMIRTFSHAGLEAYASASSVPVINALSDDYHPCQLLADVMTWTELRGSVEGRTAVWVGDGNNMCHSWINAARQFGFKLRVCCPKGYEPRADILEAARDCVTLLHDPHEAAKDADLITTDVWASMGQEEEQAKREADFTGFQVTEAMLDSAQPDVLFLHCLPAHRGEEISATLLDDPRAVVWQEAGNRLHAQKALIEFLLLGKITNK
>NZ_CP020562.1|WP_038482899.1|1302623_1302974_+|Grx4-family-monothiol-glutaredoxin
MSTTAENIQRQISENPILIYMKGTPQLPQCGFSAQTVQALMGCGERFAFVNVLDNPDIRAELPKIANWPTFPQLWVEGELVGGCDIVIEMHQSGELEKLIKEAAQRAGAAESDNNA
>NZ_CP020562.1|WP_083002593.1|1303109_1305113_+|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPRTFHELVGQAHVQRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAKCLNCTANGRGNEGITSTPCGECDSCRAIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFTLKHMPPERVVEHLTYVLGEEGVEYDESALWLLGKAAEGSMRDAMSLTDQAIAFGQGAIRHADVAAMLGTLDHRHVLALVEALAEVDVQRLLAEVAQLSEQGPDFAAVLDELSAVLHRLAVAQMVPDAVDNSHGDRALIQQLASRFTAEDIQLYYQIGIQGRGDMVHAPDLRSALEMTLLRMLAFRPQGVPKPAATPLPLRREPSSDTVSQETVSHEPVSHEPTAKKPEPALPSNQVKMPDSAAVQASAATGATEELSAPGAVSSEQAPPWSLDEVESAAMLSSEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPVSSEVPANAASSQAADDRLDHAGWLACFSALGLGGLTRNLAAHCQLESDDGHTVVLRLDPGQSAMQADVHNGRIERALSSYGLPRRIEFTVADLAPDLETPRQQEERQQKERHSLAVDLLHRDPNIQKLQQAFGATLIESTVKPASDKRS
>NZ_CP020562.1|WP_038482905.1|1305167_1305494_+|YbaB/EbfC-family-nucleoid-associated-protein
MFKGGMGNIMKQAQEMQEKMQQIQEEAAKAEVHGEAGAGMVKITMNGRHDVTNVTIDPSVLEEDKELLEDLLAAAVNDAVRKVEANSKAKMEEATAGLNLPPGFKMPF
>NZ_CP020562.1|WP_083002596.1|1305496_1306102_+|recombination-protein-RecR
MRFSPLVEQLMDAFRVLPGVGPKTAQRMAMHLLERERPGGQRLAAVIQQAIEEVGYCQRCRTLTEADICALCESPRRDDALLCVVESPADQLAIEEAGGFQGRYFVLHGHLSPLDGIGPDAIGLDLLESRVAEGNIREVVLATNPTVEGEATAHFIAAQLAHYGVSFSRLAYGVPMGGELEYVDGGTLSRAFNGRQPFASD
>NZ_CP020562.1|WP_083007863.1|1306154_1307285_+|ribonuclease-D
MSSLAPSLYQWIDSADALDAACEQVAGASVIALDTEFFRENTFFPVPALIQFTTGDMAYLVDPLSTPCTAAFRDLLQNSAIKLLHACSEDLEVFQHWAGVLPVPLIDTQVAQAFLGETPGMGYQKLVEHWMGETLPKEETRSNWLERPLTPSQCEYAALDVIYLLKVWGLQAEKLEQMGRREWLNDECASLIEQAGRSVESDGQWYTRQRQLWRLDPRQLEAYRLMTIWREGETRRRDLPRNWLVSDKLLFAVAEKMPKNRYELAEIEGVKPPLVKKEGDTLLSLVKRAQHCPEGDLLARWPDPMHPVFKRRFKALKKVVTEKAAELQIAPEMLLRRRDIEALVMQRLANQPLTTPGGWRDAYLTQEIHQALEELS
>NZ_CP020562.1|WP_038482913.1|1307284_1307578_+|YcgL-domain-containing-protein
MSEKLLCEILKSSRKDEMYLYIDKQKGLSSVPDALMDTFGKPVPVLTMILTADKKLARVNAADVMDAIQEQGFYLQMPPAKEAYLLDVHRAQAANRE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1036831 : 1081690

uncultured_Caudovirales_phage(17.65%)

tRNA,tail,portal,capsid,terminase,integrase,plate,head

attL 1039327:1039346|attR 1078018:1078037

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083001905.1\|1036831_1038286_+	catalase	A0A2K9L572	Tupanvirus	8.5e-91	43.3
WP_083007848.1\|1038362_1039394_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
1039327:1039346	attL	NA	NA	NA	NA
WP_083001907.1\|1039525_1040581_+\|integrase	site-specific integrase	A0A2K8I325	Pseudomonas_phage	1.5e-68	41.8
WP_083001910.1\|1040573_1041404_-	hypothetical protein	NA	NA	NA	NA
WP_083001912.1\|1041390_1041780_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	G8DF69	Emiliania_huxleyi_virus	2.2e-06	32.3
WP_083001914.1\|1041838_1042096_-	hypothetical protein	A0A1D9C9N7	Salinivibrio_phage	2.8e-13	45.2
WP_083001916.1\|1042092_1042401_-	hypothetical protein	A0A1J0GUZ1	Halomonas_phage	9.4e-16	48.8
WP_083001919.1\|1042638_1042854_-	hypothetical protein	NA	NA	NA	NA
WP_083001922.1\|1042868_1045136_-	replication endonuclease	A4JWW0	Burkholderia_virus	5.1e-66	36.3
WP_083001924.1\|1045132_1045342_-	hypothetical protein	NA	NA	NA	NA
WP_083001927.1\|1045338_1045749_-	hypothetical protein	NA	NA	NA	NA
WP_083001929.1\|1045759_1046137_-	hypothetical protein	NA	NA	NA	NA
WP_156886194.1\|1046133_1046469_-	hypothetical protein	NA	NA	NA	NA
WP_083001934.1\|1046461_1046650_-	hypothetical protein	NA	NA	NA	NA
WP_083001936.1\|1046687_1046891_-	hypothetical protein	NA	NA	NA	NA
WP_083001939.1\|1046926_1047133_-	hypothetical protein	NA	NA	NA	NA
WP_083001941.1\|1047293_1047488_+	hypothetical protein	NA	NA	NA	NA
WP_156886195.1\|1047441_1047675_-	hypothetical protein	NA	NA	NA	NA
WP_083001943.1\|1047767_1048433_+	LexA family transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	2.6e-15	33.1
WP_083001945.1\|1048498_1049089_+	hypothetical protein	NA	NA	NA	NA
WP_156886196.1\|1049153_1049393_+	hypothetical protein	NA	NA	NA	NA
WP_156886197.1\|1049382_1050261_+	hypothetical protein	NA	NA	NA	NA
WP_083001949.1\|1050504_1050855_+	hypothetical protein	NA	NA	NA	NA
WP_156886198.1\|1051133_1051289_+	hypothetical protein	NA	NA	NA	NA
WP_156886199.1\|1051465_1052326_+	hypothetical protein	NA	NA	NA	NA
WP_083001953.1\|1052388_1052820_-	hypothetical protein	NA	NA	NA	NA
WP_083001955.1\|1052838_1053336_-	hypothetical protein	NA	NA	NA	NA
WP_083001957.1\|1053332_1054139_-	TIGR04255 family protein	NA	NA	NA	NA
WP_083001959.1\|1054803_1055223_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.0e-33	53.3
WP_083001961.1\|1055265_1055448_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.1e-16	69.5
WP_083001964.1\|1055534_1056515_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	1.2e-83	48.9
WP_083001966.1\|1056511_1056955_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	1.2e-40	61.4
WP_083001968.1\|1056965_1059611_-	hypothetical protein	Q9ZXK0	Pseudomonas_virus	7.0e-27	23.4
WP_083001970.1\|1059657_1059783_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	5.1e-05	61.8
WP_083001972.1\|1059815_1060166_-\|tail	phage tail assembly protein	E5E3Q0	Burkholderia_phage	1.9e-20	58.1
WP_083001974.1\|1060226_1060736_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	6.9e-40	46.7
WP_083001976.1\|1060751_1061921_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	5.5e-149	66.0
WP_083001978.1\|1062081_1062948_+	hypothetical protein	NA	NA	NA	NA
WP_083001980.1\|1062974_1063637_-	DUF4376 domain-containing protein	A0A291LAV4	Bordetella_phage	2.2e-06	39.8
WP_083001982.1\|1063647_1065288_-	hypothetical protein	A0A1S6KZZ8	Salmonella_phage	1.9e-38	53.3
WP_083001984.1\|1065250_1065871_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	8.1e-43	52.8
WP_083001986.1\|1065863_1066781_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	6.1e-95	62.2
WP_083001988.1\|1066777_1067113_-\|plate	baseplate assembly protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.2e-24	53.2
WP_083001990.1\|1067112_1067682_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	1.3e-31	39.0
WP_083001992.1\|1067757_1068228_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	2.1e-30	47.3
WP_083001994.1\|1068224_1068710_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.3e-19	37.7
WP_083001996.1\|1068706_1069141_-	DUF1353 domain-containing protein	K4F6K2	Cronobacter_phage	1.7e-10	44.4
WP_083001999.1\|1069143_1069494_-	DUF882 domain-containing protein	I7FWL0	Pectobacterium_phage	5.8e-30	54.4
WP_156886200.1\|1069490_1069769_-	hypothetical protein	NA	NA	NA	NA
WP_083002004.1\|1069813_1070029_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	4.5e-09	47.8
WP_083002006.1\|1070025_1070487_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	6.1e-19	41.0
WP_083002009.1\|1070601_1071282_-	hypothetical protein	A4JWP8	Burkholderia_virus	7.3e-45	48.0
WP_083002011.1\|1071281_1072295_-\|capsid	phage major capsid protein, P2 family	A0A1S5NPT2	Burkholderia_phage	6.5e-114	60.1
WP_083002014.1\|1072347_1073172_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	1.7e-56	47.9
WP_083007849.1\|1073316_1075107_+\|terminase	terminase	A0A077K8Q7	Ralstonia_phage	9.8e-206	58.3
WP_083002016.1\|1075103_1076159_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.0e-109	58.6
WP_156886201.1\|1076281_1077043_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.4e-91	60.7
WP_083002019.1\|1077118_1077730_+	hypothetical protein	NA	NA	NA	NA
WP_083002021.1\|1078797_1079379_+	hypothetical protein	NA	NA	NA	NA
1078018:1078037	attR	NA	NA	NA	NA
WP_083002023.1\|1079401_1079926_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083002025.1\|1080211_1081690_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

1716918 : 1724344

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083003613.1\|1716918_1717962_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-34	38.2
WP_039869192.1\|1718421_1719048_+	riboflavin synthase	A0A1V0SE20	Indivirus	3.4e-20	33.9
WP_083003617.1\|1719246_1720545_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.2e-73	40.4
WP_083003621.1\|1720580_1721126_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.1e-30	43.6
WP_009723428.1\|1721134_1721614_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_083003625.1\|1721615_1722299_+	uracil-DNA glycosylase	A0A0B4Q626	Equid_gammaherpesvirus	6.0e-47	46.6
WP_009723426.1\|1722396_1723026_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_083003628.1\|1723114_1724344_+	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	6.8e-57	37.8

DBSCAN-SWA_3

2077437 : 2125672

Pseudomonas_phage(24.0%)

tRNA,tail,holin,portal,capsid,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083004684.1\|2077437_2078478_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_038484762.1\|2078474_2078798_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_083004687.1\|2078858_2080439_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.4e-69	50.0
WP_083004691.1\|2080611_2082069_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_083004695.1\|2082188_2082740_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.3e-55	60.2
WP_083004698.1\|2083038_2083632_+	hypothetical protein	NA	NA	NA	NA
WP_083004702.1\|2083685_2084660_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_083004705.1\|2084693_2085413_-	ComF family protein	NA	NA	NA	NA
WP_083004708.1\|2085828_2086563_+	hypothetical protein	NA	NA	NA	NA
WP_156886215.1\|2086705_2087461_-	hypothetical protein	NA	NA	NA	NA
WP_083004714.1\|2087420_2088470_-	GSCFA domain-containing protein	NA	NA	NA	NA
WP_083004718.1\|2088740_2088998_-	hypothetical protein	NA	NA	NA	NA
WP_083004721.1\|2089032_2089992_-	hypothetical protein	A0A0D4DCQ4	Acinetobacter_phage	3.7e-26	44.8
WP_083004725.1\|2090004_2096532_-	hypothetical protein	A0A2I6PHT2	Pseudomonas_phage	2.1e-245	49.9
WP_156886216.1\|2096528_2097110_-\|tail	tail assembly protein	A0A2I6PHT6	Pseudomonas_phage	2.4e-20	52.1
WP_083004731.1\|2097121_2097844_-	hypothetical protein	W6E9P7	Rhizobium_phage	5.9e-53	45.3
WP_083004735.1\|2097927_2098194_+	hypothetical protein	NA	NA	NA	NA
WP_083004738.1\|2098269_2098968_-\|tail	phage minor tail protein L	W6EC15	Rhizobium_phage	7.8e-42	41.4
WP_083004742.1\|2098964_2099315_-	hypothetical protein	A0A0P0ZCS8	Stx2-converting_phage	8.5e-05	30.0
WP_083004745.1\|2099317_2102788_-	tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	7.8e-34	35.4
WP_083004749.1\|2102961_2103453_+	hypothetical protein	NA	NA	NA	NA
WP_083004753.1\|2103505_2103874_-	hypothetical protein	NA	NA	NA	NA
WP_083004757.1\|2103843_2104188_-	hypothetical protein	NA	NA	NA	NA
WP_156886217.1\|2104202_2105138_-	hypothetical protein	G8CLB2	Synechococcus_phage	9.7e-40	33.5
WP_083004764.1\|2105097_2105307_-	hypothetical protein	NA	NA	NA	NA
WP_083004767.1\|2105323_2105731_-	hypothetical protein	NA	NA	NA	NA
WP_083004771.1\|2105727_2106330_-	hypothetical protein	NA	NA	NA	NA
WP_083004774.1\|2106339_2106645_-	hypothetical protein	NA	NA	NA	NA
WP_083004777.1\|2106644_2106938_-	hypothetical protein	NA	NA	NA	NA
WP_083004780.1\|2107005_2108046_-\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	1.5e-65	38.4
WP_083004783.1\|2108091_2108442_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	6.5e-13	40.2
WP_083004787.1\|2108481_2109705_-	S49 family peptidase	A0A219YB02	Aeromonas_phage	7.9e-58	47.3
WP_156886251.1\|2109744_2111397_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	2.5e-75	35.2
WP_083004794.1\|2111406_2111628_-	hypothetical protein	NA	NA	NA	NA
WP_083004797.1\|2111624_2113595_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	1.4e-181	53.9
WP_083004800.1\|2113572_2114127_-	hypothetical protein	NA	NA	NA	NA
WP_156886218.1\|2114245_2114392_-	hypothetical protein	NA	NA	NA	NA
WP_083004805.1\|2114384_2114816_-	hypothetical protein	NA	NA	NA	NA
WP_083004808.1\|2114812_2115136_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.6e-18	47.5
WP_083004810.1\|2115161_2115785_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0GUZ6	Halomonas_phage	6.0e-54	58.4
WP_083004813.1\|2115998_2116376_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.3e-07	35.3
WP_083004816.1\|2116621_2118085_-	hypothetical protein	A0A2H4JF22	uncultured_Caudovirales_phage	4.1e-61	37.1
WP_083004819.1\|2118084_2119119_-	toprim domain-containing protein	D5LH15	Escherichia_phage	1.8e-26	34.5
WP_083004821.1\|2119183_2119696_+	hypothetical protein	NA	NA	NA	NA
WP_083004824.1\|2119744_2120263_+	hypothetical protein	A0A127KNL4	Pseudomonas_phage	5.8e-18	34.7
WP_083004828.1\|2120275_2120566_+	hypothetical protein	NA	NA	NA	NA
WP_156886219.1\|2120568_2120775_-	hypothetical protein	Q9MC51	Pseudomonas_phage	4.5e-06	43.3
WP_083004835.1\|2120767_2121277_-	hypothetical protein	NA	NA	NA	NA
WP_083004840.1\|2121466_2121718_-	hypothetical protein	NA	NA	NA	NA
WP_083004844.1\|2121764_2122439_+	hypothetical protein	A0A2H4J868	uncultured_Caudovirales_phage	7.1e-08	30.3
WP_083004848.1\|2122448_2123453_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_083004852.1\|2123532_2123724_+	hypothetical protein	NA	NA	NA	NA
WP_156886220.1\|2123720_2124050_+	hypothetical protein	NA	NA	NA	NA
WP_083004855.1\|2123956_2124367_+	hypothetical protein	NA	NA	NA	NA
WP_083004860.1\|2124457_2124811_+	hypothetical protein	A0A2D1GMS3	Marinobacter_phage	3.4e-22	48.6
WP_083004863.1\|2124862_2125672_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	1.4e-42	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage