CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020615	Tatlockia micdadei strain NZ2016 chromosome, complete genome	1 crisprs	cas3,WYL,DEDDh,DinG	1	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020615_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020615_1

2629558-2629665

Orphan

Consensus_repeat	Method
CGTTAGCAACAGAGCACCCTAACACGCGTTCTATAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020615_1

>merge|NZ_CP020615|1|2629558-2629665|CRISPRCasFinder
CGTTAGCAACAGAGCACCCTAACACGCGTTCTATAATTTGGGTCTTTCCCAATTACGGGGGCACTAATACGTTAGCAACAGAGCACCCTAACACGCGTTCTATAATTT

>NZ_CP020615|1|1|2629558-2629665|CRISPRCasFinder
CGTTAGCAACAGAGCACCCTAACACGCGTTCTATAATTT	GGGTCTTTCCCAATTACGGGGGCACTAATA
CGTTAGCAACAGAGCACCCTAACACGCGTTCTATAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020615.1\|WP_083012695.1\|2631845_2634272_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP020615.1\|WP_045098575.1\|2620613_2621162_-\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_CP020615.1\|WP_083012694.1\|2631027_2631372_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020615.1\|WP_083012700.1\|2641116_2642205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP020615.1\|WP_045098526.1\|2644158_2645340_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP020615.1\|WP_083012692.1\|2625275_2627000_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP020615.1\|WP_083012699.1\|2638867_2639197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020615.1\|WP_083012702.1\|2643050_2644001_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020615.1\|WP_083012704.1\|2645349_2646054_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020615.1\|WP_045098570.1\|2624823_2625267_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP020615.1\|WP_083012697.1\|2634322_2638522_+\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|341253
NZ_CP020615.1\|WP_045098571.1\|2624590_2624821_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP020615.1\|WP_052679438.1\|2639654_2640131_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP020615.1\|WP_045098577.1\|2619092_2619314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020615.1\|WP_045098573.1\|2622500_2623328_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP020615.1\|WP_083012690.1\|2621263_2622394_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP020615.1\|WP_045098572.1\|2623406_2624429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP020615.1\|WP_045098568.1\|2627096_2628977_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP020615.1\|WP_045098576.1\|2619620_2620610_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235468
NZ_CP020615.1\|WP_172838913.1\|2631453_2631636_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020615.1\|WP_083012695.1\|2631845_2634272_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.30992e-80
NZ_CP020615.1\|WP_045098575.1\|2620613_2621162_-\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	3.91756e-103
NZ_CP020615.1\|WP_083012700.1\|2641116_2642205_-\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	4.14302e-13
NZ_CP020615.1\|WP_083012692.1\|2625275_2627000_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP020615.1\|WP_045098570.1\|2624823_2625267_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	2.49247e-58
NZ_CP020615.1\|WP_083012697.1\|2634322_2638522_+\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	8.61288e-147
NZ_CP020615.1\|WP_045098571.1\|2624590_2624821_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	5.18623e-15
NZ_CP020615.1\|WP_045098526.1\|2644158_2645340_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP020615.1\|WP_045098573.1\|2622500_2623328_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	3.52603e-80
NZ_CP020615.1\|WP_083012690.1\|2621263_2622394_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP020615.1\|WP_045098572.1\|2623406_2624429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP020615.1\|WP_045098568.1\|2627096_2628977_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP020615.1\|WP_045098576.1\|2619620_2620610_-\|malate-dehydrogenase	gnl\|CDD\|235468	PRK05442, PRK05442, malate dehydrogenase; Provisional.	0
NZ_CP020615.1\|WP_052679438.1\|2639654_2640131_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.23784e-13

>NZ_CP020615.1|WP_045098568.1|2627096_2628977_+|RNA-polymerase-sigma-factor-RpoD
MNMNDQEQQRSQITKVISLGKEQNYLTYAQINDLLPNIVDTEHFDVIISMLEGMNIKVFETPPSDDELALLGTTEEAPEDVEEAAAVLASVDKETGRTTDPVRMYMREMGTVELLTRDGEIRIAKRIEEGIYQVLKSLAHYPETVELVLQDYDRVATEEMRLSEIISGFADIEEEAPAANIGSMLDESQQEEIIEEEEIIAVDEDEDGEGGGIVETDDGPNPEQAKIYFDELRENYHHAMKSLKEHGRTNSKTVELLDTMSESFLKLKLTSRQVDRLTRHFRQLRNHIREFERSVMRLCIEKARVPRKLFIDTFPGQETDIKWLDDLIRNHGKKLEMQRIEEYRDEILRLQSKLAAFEEEYGLTISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMELSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIESPIDCATAEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLEGDET
>NZ_CP020615.1|WP_083012692.1|2625275_2627000_+|DNA-primase
MSGLIPRPFIDELLSRIDLVELIDSYVPLKKQGTSYVACCPFHSEKTPSFNVVAKKQFYHCFGCGVSGNAISFMMSYLNQGFTDAVETLASRIGMKVPREGNSEKHQETLSLYQLLTQVSQFYQQSLRTKGEIAINYLRGRGLSGEIAKLYQLGYAPAGWQTLESQFKKNKNELIATGMLIKKEDGKTYDRYRHRIMFPIHDRHGRIIGFGGRVIDPQQKPKYLNSPETTIFQKSRELYGLHQVLQQQQIIDNILIVEGYMDVIALAQHGIRNAVATLGTATSSYHIQLLAKHTKQLIFCFDGDEAGRQAAWRALESCLPELNTGLDVNFIFLPEEHDPDSLVREEGGEKFRERLKKATPLNRFFLDTIARGIDIFTVTGKSQLINAARPYMLKMMEGPYKQLLLNELSRMTHIENYRIAQILSDKPQQKIQESSKKIANSPIRLAIALLIQNPEIYNACKAQVNAGVLDGKEQEVLRKLLHQIENSPNANTATLIEAWRDTPYFEALGKLASWDHREPEEELIKKFTDIIIFLQKQNLENKIKLYLAKSRNQGLTDSERLMLQEMMKQRHQIE
>NZ_CP020615.1|WP_045098570.1|2624823_2625267_+|GatB/YqeY-domain-containing-protein
MTIKDCISNDLKDAMRARDKKKLDTLRLVTAAVKQVEVDERIVVDDERMLIILDKLAKQRKESIAQFQTAGRDDLVAQEQYELEIISHYLPEPLSDQEIEALIAKALADTGATKMSDMGKVMTQLKPQVQGRADMSKVSQLIKAKLS
>NZ_CP020615.1|WP_045098571.1|2624590_2624821_+|30S-ribosomal-protein-S21
MPTVRVKEGENPEYALRRFKRSCEKAGILTELRRREFYEKPTAERKRKQAAAVKRHLKKISRDTTASRRNVKHRRK
>NZ_CP020615.1|WP_045098572.1|2623406_2624429_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIESSCDETGVAIYDSEKGLLAHALHSQVLIHQRYGGVVPELASRDHVKYLVPLVDTVLRQAGVLKSALDAIAYTAGPGLVGALLTGACFAKSLALGLNKPALAIHHLEAHLLAAKLDSPQLDFPFLALLVSGGHTQLIEVHGLGDYQLLGDTLDDAVGEAFDKTAKLMGLAYPGGAVLAKLADNCLLGTEVFPAFPRPMTDRPGLDFSFSGLKTHALTTWNSSAKDDEARAAIAKAFQQAVVDTLLIKCKRALNQTACRRLVVAGGVGANRSLRVSLRALMEELGGEVYFPRPEYCTDNGAMVAFAGCLHLLQGKKDLSTAVEVKARWPLTEHSL
>NZ_CP020615.1|WP_045098573.1|2622500_2623328_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MAALVFIFFVVLGYVFGSVCSAVIVSQVFSLPDPRISGSRNPGATNVLRLAGKKYAAMVLVADILKGLLPVLLAKAFDVSPITVSFTCLATVLGHMYPAFFGFHGGKGVATAIGALLGLHFILGVMVIATWLLVANFTRYSSLASIVSMVLAPLYALLTIGRLDIFPPLFFIALFILYKHRNNITRLIDGEEPKIQFNRSSLNEEIDATLTEAIRESQIEQEEDPSLLIPDEAEEKISPIIKEKQTSTEPKDNLSPVIETGEKPSPRTPTKKKKQ
>NZ_CP020615.1|WP_083012690.1|2621263_2622394_+|radical-SAM-family-heme-chaperone-HemW
MLPTSLYIHIPWCIRKCPYCDFNSHKSPDILPEKEYIAALIADFKADLARFPAREIHTIFIGGGTPSLLSAEAYALLFTQLQKLVNFAKDIEITLEANPGTVEQQRFSDYRQLGINRLSLGIQSFNPLHLKALGRIHDDKQAHKAIEAARNAGFTNLNIDLMHGLPGQSAGQGLDDLNMALAHEPEHLSWYQLTIEPNTIFYKKTPLLPSEDEVCQLEEQGLNLLAAHGYQRYEISAFCKTEKFARHNLNYWLFGDYYGVGAGAHGKITEAGQVFRLKKHRQPNEYLHPEKSYLAAEEQVGADSLLFEFMLNTSRLEQAIPMSLFTERTGLPLSVLKPFLIKAAEIGLITMDDHFWQVTSFGRRYTNNLQAMFLPD
>NZ_CP020615.1|WP_045098575.1|2620613_2621162_-|ADP-compounds-hydrolase-NudE
MREKPICTNKTVIAKSRLFTVEEMKLRFANGAQRCFERIRSHGHGAVLIVALTAGESLLLAREYAAGTDTYELGFPKGLIERGESLFEAANRELREEVGFAAKKFDWVKTMTLAPAYFGAKIDLVIARDLFPSPLPGDEPEPPEVIEWPLSAYQELLVRPDFSEARSIAALLLVKQWLEKGK
>NZ_CP020615.1|WP_045098576.1|2619620_2620610_-|malate-dehydrogenase
MNKRLRIAVTGAAGQIGYALLFRIASGQMFGPHTEVELHLLELEQALPALEGVAMELEDCAFPLLKNVVCTSELKHAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGKAINDYAAQDVRVFVVGNPCNTNCLIAKHHARDVPDDRFYAMTTLDELRARAQLAKKAGVDVTRVSQMTIWGNHSSTQYPDFYNAKINGFSAATVIDDEDWLKNTFVSTIQQRGAAIIKARGASSAASAANAIIHGVGCLTNDTPPMESFSVCRSSQGEYGVDEGLIFSFPCRHEHNDVHVVENLKFNEYSQAKFNETLNELRQERDAVKELGLLD
>NZ_CP020615.1|WP_045098577.1|2619092_2619314_-|hypothetical-protein
MKAIKTLLSVAVLCVISVGAANAAWMCSVSDAKQLTFTGTGNDRASALASAMAACSKGSTYAKNCVVQNCSQQ
>NZ_CP020615.1|WP_083012694.1|2631027_2631372_+|hypothetical-protein
MTDVVIPPYVYEDRSSESSLLQGDILKINGQFRQYFDEFYPAIQPSDGKIQYVMILTQSCDLVRTKKRKPKLSHVNVCLVRRLSCLIKRLIKDEIRPTEIGNKKIISRDALDQL
>NZ_CP020615.1|WP_172838913.1|2631453_2631636_+|hypothetical-protein
MVAVLPLSFSFRTDHYDLLLENRVLGIKPEFQAKVGHIIAQLYSSCNTLHQKYHTLDKLL
>NZ_CP020615.1|WP_083012695.1|2631845_2634272_-|response-regulator
MSINHLNFIKQNPLLLSIANQLPEILVILDDQFDIAIFNDGAEKLFHCTLLEAQGKPFSEICYKSRIPCFISDYARINAHIKTFNQEIETIINNTKYKWQIYSVETPDGLFHVFKTINFSESESKNAIYQLETLLENMPCNVYWMDKNCLMLGCNKNVLTMLNMTIEQFRGKTYEELSFLCNWPEGLAQKLKNDDLTVLRTGKAIYGIEDPPLPGTNDTVFNFLTSRVPLRNKNGEIIGVAGISTDITALKRAKEQAEIASRAKSEFIANMSHDVRTPLTGIIGMARNLELNLDDEPAKMDAHLINESGEQLLDLLNGVLDIISAESISEDDLQEESFDLRQSIEAIAALEMPTIKLKDLELKIDMDDDIPNYLIGDRVKLNRILLNLLGNAIKFTLKGYVEIKIKVIEQSKNKVMLNFMVIDTGIGIPVGAREKIFKRFYRGSPSYKGIYKGHGIGLHIVKKYVKLLGGKIKLQSQINHGSTFYFDLPFKIGSPEPIQIDNHTRQSTQSVISQIKDKVREIKKNTHTPHLLLVEDDLVALRVIEGIIKETDCRFTSTMDGKEALAIATTNLFDLILTDIGLPNLSGIEFAQCLRDWEKSHHKKPIPVVALTGHAKQEVEAKGIKSGIDKVVQKPLRLEMLGSIFDEFLLSSNNSKAMNKEHKPESTSDHSLKKASIDVGLGIDLPNTEAELFEMGQFPLLDVDKGIETLGNETTLDEMLKMMIVEIPKSKEEIQTAYALSDWDKVEKLAHKAKGGASYVGTIRMQYACQYLERYRKAGYAKSLELLYQQLIKVLDETYLFIKNRFDQ
>NZ_CP020615.1|WP_083012697.1|2634322_2638522_+|amino-acid-adenylation-domain-containing-protein
MQSTCYLIGEDSLLIQCGNLLLSNDYIISLVISSTKSIHQWAKKHSIPVIKSIHEINFEASSQVDYIFSIVNSHILSSSFINLARKLVINYHDSLLPDYAGLNATSWVLVNGEKQHGITWHVVNEKIDEGDILIQRSFPIVQNDTALSLNLRCYEQAISSFSELLNCLKSGVYSARPQSLVNRRYFAATHLLPDLGFINWQIMSAQFIVKMHRALLLGHYKNNIGLLKIYLGTDFLIVLDAHVLDKPLERKNPGTIINISLSEIQVVTHDGIINLRFKLPTSDKVSTETILKYNLLPGIQLPLLPDNFVELHSKSYKDALHNEEFWIKKLQDSVEHKIFPSLSTHQNHFNQRIGPLKISSLLIDTSNKQKAIILLTGLLVYFFRLNNYEKTSIYLIPQTQTFSQKSLNLLFPCCMPFNWPSLKNAYSLEEMTKTVVKKYHSLLAHAGYLGDILLRHPELENHVSPSIAISFSSIEFHRLPNSVTIYIHIDEKNDCINCYHRLDEVKNESQLKLISYFNLHFSKIIEVLANSPKTPINEFSFLSATEENSLFQIGSGKPYPLPSHSITTLFEKQVEEKPNHPAILMNSEEVISYLKLWQMGEIIADAIRSKVPPQTFIGIYTSRNPIMLAIILGILKADCVYVPLDIKYPLGKINLIATNANLRLILTTSDLAPTLGNFFGNQNSVSIIDAEMLLETEYSPQKTFKAPLVRDADKRLAYIMFTSGTTGEPKGVIISQRNVINYCYWFQETTHLSPRSIVDFSSSIAFDLSVPCTLAPLIAGGAIAICSEEEKFNPKQYLEHLQRYGVTHTELTPGYVEILLNYPEEIRKLNKLKYLMLGADTVHTNEVKQWLSLAPQTQIVNEYGPTEATVSVTSYFVKPDLPINTSTIPIGKPAFNCSCYVLDKFNNLCPLGMRGELHVSGEQVALGYLDKPQTTDEKFINLHLSNHDPIRVYKTGDEVCWNSDGQLIFFGRNDFQIKLHGYRVELPAIESLLMQHESVHQAVVVLKKSIKEKFLRAYLVVSSNATIVLDELKDYLANYLPTYMIPKEFYLVESIPLKESEKIDFERIENEINKQLLSPPTAQFDRLTPTQEYCLTIWQSVFNKQPIRLEDDFFDLGGDSLIALQIITSLKNHYSIPISLTCLFECPTITSLSQKIEQLLKQHSPQKLMLNYESTLIKLSTGTYPIPIFLIHPVGGSVFWYQQVAKQLEGKFTIYGIQDPNLEEDKYPFENLEEMAAFYLQAISSVYQGDEFCLGGASFGATVAFEMAYQLQQADLKIKFLGLLDGWAHYPSSLMQEETLNLISHNKECLTEAQRAHFQKQEEYRKKLLSNYSIPALSANVTLFKAQKLWKGFNEINDTYNGWQRYVQGKITVHLVPGTHESMFFHPNIEKWAPLFLEI
>NZ_CP020615.1|WP_083012699.1|2638867_2639197_-|hypothetical-protein
MSNPYLGNSWHINLFLKLITNQNGLLITIYLVGLVIAIWRASIAFYSFKLMKRKFSHQYLQSDVIRYVILKTVFWPFYIFAEKVLLFDCPRHFLNVTGIKRIITTVPAA
>NZ_CP020615.1|WP_052679438.1|2639654_2640131_-|GNAT-family-N-acetyltransferase
MQKKIRFATIDDFDFIYDSMREDLEEQGVLHRFKYSKEEFRKAIFGEKPLAHFLILLIDNQPAGFANYSIDYRNFTANSLANLYLNDLFIKKPYRRMRGATLLMDKLKEIAKQENCGRIEGVVLVENTEALEFYKKFLKAKIISDKLHYMRLELAQEV
>NZ_CP020615.1|WP_083012700.1|2641116_2642205_-|hypothetical-protein
MTNIIIEFFNAIAQNDLEKIKKVKEQRIISGNACYKQLTALGLALSLGKEDVVKLLLEFERIDVNQPTQFRGKDGAIIYGTPLSICVHHNKPSLLQTLLEKNADPNLANQDKSIPLMWAFFFGHTECVNLLSAKSDWQSKDKNGLTVHDLHIASQVAEKDGYSSLYQYQKQHKCSHPALIARFKATQSQTGSAQPVQSLLTQSVQVRSVSAPALAETKKKTNQNPGVTRHITKKNPSNNLKGLVAKIKNLEAQIASKDELIESLRKEIEELKSLVAKQEMQISSTTMNCRYESITDEDEVTTDEDEVTRREIVVEEQDDKREDQDNRQTQQSEYSFFTRAHKLRIDYLLSNDDNSTPKLDSV
>NZ_CP020615.1|WP_083012702.1|2643050_2644001_+|hypothetical-protein
MTQLSEKHQFVLSFIKDNVEFFAAPLWNQFLFKEWAKDVPLIAHFSQQMHEQDVIEDINEYQEALIGKGNCDRHNSLLYGSDARIIQLLKKSDKLVDFLYSFSEKESLCSIWDEYYGSHPQIVPQKKTITQSNSNLAISSSPSTSNATQKLVAQDFGLVQICRLFETNSGGLEFFSSIALVFDDEGHALSFRKALWAKFEQEKVYSINVAYSNFNKQVYPTQFIFRVIACANSDIAFQIRENELNSGDILLEELEKLIDLKGVSQHDTDYYGRIKNKAICNGGNLTKFSVLFQEPVLIKANVTVADPVNESREITP
>NZ_CP020615.1|WP_045098526.1|2644158_2645340_+|NAD(P)/FAD-dependent-oxidoreductase
MEQIEAIIIGAGAAGLMCAIEAGKRGRKVLILDHANKVGKKILMSGGGRCNFTNYYIEPHHYFSHNPHFFKSALSRYTQWDFIELVKKHAIPFHEKTLGQLFCDNKSKDIVDMLLVECEKAGVLIHLNTIIEKIQLMDTSHFKIHASRGTFLCNSLVIATGGLSIPTMGASPFAYKVAEQFGIKVWPTRAGLVPLTLDVIDKEKCSTLSGISIDSKVKNERNEFRENILFTHRGLSGPAILQLSSYWHPGEPISVNFLPGQNLFEDLKKARLEMPQKQLNSILSMYLPKRLVEVFIPPSLAETKLSELSNREMTTIAHQLHSWIVKPNGTEGYRTAEVTIGGVDCNAISSKTMEANDVPGLYFIGEALDVTGWLGGYNFQWAWSSGWAAGQVV
>NZ_CP020615.1|WP_083012704.1|2645349_2646054_-|hypothetical-protein
MTSNIVPIGTYTIRSKRTAKPEDFIISPGAQTCLIVVLESPAGIAVAHIDTPLVAARVTLTMIEELEGMGPGQVTARMYGGDYGNPLFNSTMISTPIYAELNRRKIPYTHTDYRLTAGFAIATAAAVWACSALGPESRLMALVSIGLAYKATNIIKIALPRKWHPGFLGNNIDVCVNVMTGQVQLEKDNEQNSEMLLYQAKDKLGNTLWNRITTRASLNPEDQKNKSGLAMLRV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	37896-37925	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	544874-544903	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	545042-545071	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	2132386-2132415	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	2139788-2139817	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	3032541-3032570	1.0
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP020615.1	3033409-3033438	1.0

1. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 37896-37925, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

2. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 544874-544903, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

3. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 545042-545071, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

4. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 2132386-2132415, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

5. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 2139788-2139817, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

6. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 3032541-3032570, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

7. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to position: 3033409-3033438, mismatch: 0, identity: 1.0

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactaata	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	415383-415412	3	0.9
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_CP039693	Agrobacterium larrymoorei strain CFBP5473 plasmid pAlCFBP5473, complete sequence	159772-159801	8	0.733
NZ_CP020615_1	1.1\|2629597\|30\|NZ_CP020615\|CRISPRCasFinder	2629597-2629626	30	NZ_KY000074	Agrobacterium larrymoorei strain CFBP5481 plasmid pTi_CFBP5481, complete sequence	26859-26888	8	0.733

1. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 3, identity: 0.9

gggtctttcccaattacgggggcactaata	CRISPR spacer
gggtctttcccaattacgggggcactcaat	Protospacer
************************** *

2. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to NZ_CP039693 (Agrobacterium larrymoorei strain CFBP5473 plasmid pAlCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.733

gggtctttcccaattacgggggcactaata	CRISPR spacer
tcgtctttcccaatgacggtggcacttcag	Protospacer
  ************ **** ******   .

3. spacer 1.1|2629597|30|NZ_CP020615|CRISPRCasFinder matches to NZ_KY000074 (Agrobacterium larrymoorei strain CFBP5481 plasmid pTi_CFBP5481, complete sequence) position: , mismatch: 8, identity: 0.733

gggtctttcccaattacgggggcactaata	CRISPR spacer
tcgtctttcccaatgacggtggcacttcag	Protospacer
  ************ **** ******   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1123350 : 1132208

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083012063.1\|1123350_1124730_-	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	5.7e-36	32.2
WP_052679466.1\|1124777_1124987_+	hypothetical protein	NA	NA	NA	NA
WP_045098936.1\|1125305_1126238_-	glutaminase A	NA	NA	NA	NA
WP_045098937.1\|1126464_1127235_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	4.7e-64	51.4
WP_045098938.1\|1127231_1128257_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-80	46.4
WP_045098939.1\|1128243_1128813_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.5e-55	52.1
WP_045098940.1\|1128895_1129621_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	29.3
WP_083012065.1\|1129623_1130130_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_045098941.1\|1130122_1130701_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_045098942.1\|1130697_1131225_-	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	7.9e-23	44.6
WP_045098943.1\|1131245_1132208_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.4e-35	31.0

DBSCAN-SWA_2

1887770 : 1938792

Burkholderia_phage(10.0%)

protease,transposase,integrase

attL 1910867:1910884|attR 1942209:1942226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083012348.1\|1887770_1888946_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	6.5e-17	22.9
WP_083012349.1\|1889265_1890447_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.3e-41	30.3
WP_083012351.1\|1890536_1891478_+	Abi family protein	A3QSC6	Clostridium_virus	4.7e-34	33.6
WP_083012353.1\|1891501_1891705_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_083012354.1\|1891716_1891974_-	hypothetical protein	NA	NA	NA	NA
WP_083012975.1\|1892183_1892675_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_172838974.1\|1892664_1893279_+	flagellar biosynthesis protein FlgJ	NA	NA	NA	NA
WP_083012356.1\|1893259_1893778_+	peptide deformylase	E3SLL2	Synechococcus_phage	5.4e-16	38.3
WP_083012358.1\|1893782_1895066_+	MFS transporter	NA	NA	NA	NA
WP_083012362.1\|1895365_1896757_-	hypothetical protein	NA	NA	NA	NA
WP_083012364.1\|1896743_1903001_-	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_083012366.1\|1902997_1903654_-	radical SAM protein	A0A1Q1N979	Escherichia_phage	1.8e-16	35.9
WP_083012368.1\|1903650_1905519_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	5.1e-40	34.4
WP_083012369.1\|1905739_1905991_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083012371.1\|1906157_1907057_+	Vir protein	NA	NA	NA	NA
WP_083012372.1\|1907061_1907421_+	hypothetical protein	NA	NA	NA	NA
WP_083012374.1\|1907414_1907633_+	carbon storage regulator	NA	NA	NA	NA
WP_083012376.1\|1907625_1908039_+	hypothetical protein	NA	NA	NA	NA
WP_083012377.1\|1908035_1908620_+	hypothetical protein	NA	NA	NA	NA
WP_083012379.1\|1908612_1909434_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_083012381.1\|1909433_1909865_+	integrating conjugative element protein	NA	NA	NA	NA
WP_083012382.1\|1909855_1910488_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_083012384.1\|1910497_1910824_+	hypothetical protein	NA	NA	NA	NA
WP_010946731.1\|1910823_1911090_+	hypothetical protein	NA	NA	NA	NA
1910867:1910884	attL	NA	NA	NA	NA
WP_011213425.1\|1911086_1911452_+	hypothetical protein	NA	NA	NA	NA
WP_083012386.1\|1911463_1911826_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_083012387.1\|1911818_1912475_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_083012389.1\|1912461_1913238_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_083012390.1\|1913234_1914494_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_045098548.1\|1914450_1914798_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_083012392.1\|1914807_1917558_+	conjugative transfer ATPase	NA	NA	NA	NA
WP_083012394.1\|1917550_1918525_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_083012396.1\|1918534_1919902_+	integrating conjugative element protein	NA	NA	NA	NA
WP_083012397.1\|1919904_1921458_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_156875053.1\|1921463_1921637_-	hypothetical protein	NA	NA	NA	NA
WP_083012399.1\|1921651_1921981_+	hypothetical protein	NA	NA	NA	NA
WP_083012400.1\|1921977_1923912_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_083012402.1\|1923917_1925582_-	AAA family ATPase	NA	NA	NA	NA
WP_172838993.1\|1926262_1927069_+\|integrase	integrase	NA	NA	NA	NA
WP_083012405.1\|1927061_1927961_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_083012407.1\|1928081_1928759_-	hypothetical protein	NA	NA	NA	NA
WP_083012409.1\|1928847_1930104_-	hypothetical protein	NA	NA	NA	NA
WP_083012410.1\|1930519_1930714_+	hypothetical protein	NA	NA	NA	NA
WP_083012412.1\|1930814_1931237_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	2.8e-18	44.4
WP_083012414.1\|1931302_1931806_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	4.3e-18	33.9
WP_083012415.1\|1931879_1932830_+	HrgA protein	NA	NA	NA	NA
WP_083012417.1\|1932839_1933538_+	site-specific DNA-methyltransferase	B3GAM7	uncultured_virus	1.4e-22	33.3
WP_083012419.1\|1933549_1934821_+	hypothetical protein	NA	NA	NA	NA
WP_083012420.1\|1934926_1935994_-	hypothetical protein	NA	NA	NA	NA
WP_083012422.1\|1936070_1936829_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_083012425.1\|1937376_1938792_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.2e-57	33.3
1942209:1942226	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2623406 : 2634272

Moraxella_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045098572.1\|2623406_2624429_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.7e-91	53.5
WP_045098571.1\|2624590_2624821_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_045098570.1\|2624823_2625267_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.3e-23	46.6
WP_083012692.1\|2625275_2627000_+	DNA primase	A0A1S5RF71	Helicobacter_phage	4.3e-49	34.6
WP_045098568.1\|2627096_2628977_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.2e-35	32.8
WP_045098007.1\|2629628_2630804_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.9e-16	23.1
WP_083012694.1\|2631027_2631372_+	hypothetical protein	NA	NA	NA	NA
WP_172838913.1\|2631453_2631636_+	hypothetical protein	NA	NA	NA	NA
WP_083012695.1\|2631845_2634272_-	response regulator	A0A1V0SGX0	Hokovirus	1.1e-39	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage