CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019779	Streptomyces sp. MOE7 chromosome, complete genome	7 crisprs	WYL,csa3,casR,DEDDh,cas4,cas3,DinG	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP019779

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019779_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_1

2084663-2084766

Orphan

Consensus_repeat	Method
GTCCCCCCGCGCCGTTCCGGCGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019779_1

>merge|NZ_CP019779|1|2084663-2084766|CRISPRCasFinder
GTCCCCCCGCGCCGTTCCGGCGTGGGTGAGGTGGTGTCCGTCATGACGGTCCTCCCTGAGCAGGTCCGGCGCGAGGGGAGTCCCCCCGCGCCGTTCAGGCGTGG

>NZ_CP019779|1|1|2084663-2084766|CRISPRCasFinder
GTCCCCCCGCGCCGTTCCGGCGTGG	GTGAGGTGGTGTCCGTCATGACGGTCCTCCCTGAGCAGGTCCGGCGCGAGGGGA
GTCCCCCCGCGCCGTTCAGGCGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084770443.1\|2087803_2088514_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP019779.1\|WP_084770439.1\|2082962_2083274_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NZ_CP019779.1\|WP_084770444.1\|2089139_2090234_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|227940
NZ_CP019779.1\|WP_173675850.1\|2091559_2092594_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP019779.1\|WP_084770442.1\|2086862_2087669_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238861
NZ_CP019779.1\|WP_084770435.1\|2074858_2076286_-\|citrate:proton-symporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP019779.1\|WP_084770446.1\|2092590_2093394_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP019779.1\|WP_033267229.1\|2079629_2080988_+\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421
NZ_CP019779.1\|WP_158541791.1\|2074514_2074688_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084770433.1\|2072986_2074381_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143456
NZ_CP019779.1\|WP_033267220.1\|2090702_2091518_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP019779.1\|WP_033267224.1\|2086325_2086589_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_158541792.1\|2082807_2082963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_107487522.1\|2096977_2098261_-\|xylan-1,4-beta-xylosidase	unknown	unknown	gnl\|CDD\|366525
NZ_CP019779.1\|WP_158541793.1\|2084916_2086191_+\|DNA-methyltransferase	unknown	unknown	gnl\|CDD\|380119
NZ_CP019779.1\|WP_084770438.1\|2081734_2082658_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP019779.1\|WP_084770436.1\|2076420_2078646_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239163
NZ_CP019779.1\|WP_033267216.1\|2098476_2099589_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|99707
NZ_CP019779.1\|WP_033267228.1\|2081004_2081754_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP019779.1\|WP_084770437.1\|2078818_2079481_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380058

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084770443.1\|2087803_2088514_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	9.33102e-26
NZ_CP019779.1\|WP_084770439.1\|2082962_2083274_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	1.49421e-06
NZ_CP019779.1\|WP_084770444.1\|2089139_2090234_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|227940	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane].	1.4538e-37
NZ_CP019779.1\|WP_173675850.1\|2091559_2092594_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.51023e-19
NZ_CP019779.1\|WP_084770442.1\|2086862_2087669_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	2.16471e-57
NZ_CP019779.1\|WP_084770435.1\|2074858_2076286_-\|citrate:proton-symporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	5.38196e-171
NZ_CP019779.1\|WP_084770446.1\|2092590_2093394_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.63513e-56
NZ_CP019779.1\|WP_033267229.1\|2079629_2080988_+\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
NZ_CP019779.1\|WP_084770436.1\|2076420_2078646_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239163	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP019779.1\|WP_084770433.1\|2072986_2074381_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
NZ_CP019779.1\|WP_033267220.1\|2090702_2091518_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.21151e-45
NZ_CP019779.1\|WP_107487522.1\|2096977_2098261_-\|xylan-1,4-beta-xylosidase	gnl\|CDD\|366525	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39.	1.17767e-06
NZ_CP019779.1\|WP_084770437.1\|2078818_2079481_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380058	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the TetR Transcriptional Repressor present in sco1712 proteins from Streptomyces coelicolo which act as a regulator of antibiotic production.	3.03668e-15
NZ_CP019779.1\|WP_158541793.1\|2084916_2086191_+\|DNA-methyltransferase	gnl\|CDD\|380119	pfam18135, Type_ISP_C, Type ISP C-terminal specificity domain. This is the C-terminal domain of Type ISP restriction-modification enzyme LLaBIII present in Lactococcus lactis subsp. cremoris. Type ISP restriction-modification (RM) enzymes provide a potent defence against infection by foreign and bacteriophage DNA. This domain interacts extensively with DNA and is known as the target recognition domain (TRD). TRD works by recognising 6/7 base pairs of asymmetric sequence.	3.2398e-62
NZ_CP019779.1\|WP_084770438.1\|2081734_2082658_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.07963e-40
NZ_CP019779.1\|WP_033267216.1\|2098476_2099589_+\|AAA-family-ATPase	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	8.10546e-08
NZ_CP019779.1\|WP_033267228.1\|2081004_2081754_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.69e-44

>NZ_CP019779.1|WP_084770439.1|2082962_2083274_+|antibiotic-biosynthesis-monooxygenase
MTIEYIRYRITEPERRAAFEKAYTAAAEQLDAAPECLGYDLAHGVEEPERYILRIEWTSVEDHLKGFRGGPLFGPFLASVRPYIDDIEEMKHYTPTAVTSARR
>NZ_CP019779.1|WP_158541792.1|2082807_2082963_+|hypothetical-protein
MIPVTGATGAASAVTDTVPRLLGRPARSLATFLTDHTALLPSGPDTAQENR
>NZ_CP019779.1|WP_084770438.1|2081734_2082658_-|LysR-family-transcriptional-regulator
MEPELRQMRYFVAVAERRSFTRAAEDVYVAQQALSQQIKALEDTLGVRLLDRTSRRVDLTPAGAAYLADCKRVLSAAGRAARHARAVAAGEVGKVRIAYTVTAAYETLPALTAHLAERAPRLKVETREIFAADVCRMLRDERCDLALAPGTGYPDGIARQTVRREELRVAVGDRHPYAGAPAVELAGLRGETFQLWPREMAPGYYDAVAGACRAAGFEPVLDETASGSNAWAGIAAGRGVNLVVASLARQLPRGITLVPLAKPVPVLRVDAVWRAEHPHPAVPRVLAGCAELWPGETSGGAVSAPPG
>NZ_CP019779.1|WP_033267228.1|2081004_2081754_+|GntR-family-transcriptional-regulator
MTTFAPDSLDLNRKLPLWYQVSQSLRASILGRSPKDPLRLPTEDALAAHYGVSVLTMRQALKELEAEGLISRHRRRGTFIEPSAQRGAPVRLLGSVDAIVAQQSGMSTELLDHGPTAVPAELAEYFPELSEVGGFRRLRSDEETGEPTNHACNYVRPDVAALIDPQDLVRWPMTKVLRDAVGVRISRITDTVEARLADPETARLLRVPLLSPILHYTGVTYDEDGRPVDVARIHYRGDRFSFTVTLEAH
>NZ_CP019779.1|WP_033267229.1|2079629_2080988_+|homogentisate-1,2-dioxygenase
MAGTGNEQARKTAEGLAYATGFGNEHSSEAVPGALPVGRNSPQRAPLGLYAEQLSGSAFTEPRASNRRSWLYRIRPSAAHPPFVRGEQRALRSAPFTDCAADPNRLRWNPLPAPEGPTDFVDGLWTLGGNGDATQRTGMAVHLYHANASMERRVFSDADGELLIVPERGGLLLRTEFGLLRAEPGEVALIPRGVRFRVELLDAAPDGGPAPTARGYVCENYGRPFELPDLGPIGANGLANARDFRAPLAAYEDVEGPVEVVNKFCGNLWTATYDHSPLDVVAWHGSHVPYVYDLRSFNVIGSISYDHPDPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMTEYMGLIEGAYDAKTAGEGGFVPGGGSLHNMMSAHGPDRETFDRASAAELAPQKIDDGLAFMFETRWPLTLTEQARDAGHLQRGYDDVWQGLQRHFRL
>NZ_CP019779.1|WP_084770437.1|2078818_2079481_-|TetR-family-transcriptional-regulator
MQQPPSRPAPPASDPGPPATPLRRAPVQRRSAQRLARILDACAEVLEETGYEDLSTRAVALRAGVPIGSVYRFFPNKRAMAEALARRNLDAYADRITARLTAVDEAPPAWRRAMDVVVDEYLAMKRTVPGFALVEFTVPAPRETRQANYLVADRLLALFAGPLGLDAADQRLRTAFLVGVETADALLQLAFRTDPAGDPAIVTEAKELLRAYLARYLDTA
>NZ_CP019779.1|WP_084770436.1|2076420_2078646_-|molybdopterin-dependent-oxidoreductase
MTRTALRICPLCEATCGLTVTVDGDRITAARGDRDDVFSKGFVCPKGASFGELDADPDRLTRPLVRRDGVLTEATWDEAFAAVQAGLRPVVEAHGPDAVAVVLGNPNVHTVAGALYPPVLLAGLRSRSVFTASTVDQMPKHVSSGLLYGDPLAIPVPDLDRTDHLLIIGANPMDSNGSLCTAPDFPGRIRALRRRGGRLTVIDPRRTRTAKLADEHLAIRPGTDALLLFAMVHVLFEEGLVDLGERAAHVVQADEVERLAAGFTPEAVAGPCDLPAAAVRRLARELAAADSAAVYGRIGASTVEFGTLTSWLVDVLAVLTGNLDRPGGLMFPLSATGAAPRPAGPGRGFALGRWRSRVSGHPEAKSELPIAALAEEIDTPGEGRVRAAVAIAANPVLSVPDGDRLDAALASLDFMVSVDPYLNETSRHADVVLPPPPPSRGAHFDYAFNALAVRNQVRYTRPVLPLADGQPDECAIHARLILCLGGQDGADPALVDAMVIDTVLGKAVADPRSPVHGRQPDELAAQLTGRDGAERRLDMMLRLGPYGEGFGADPEGLSLARLLDHPHGIDLGPLTPRIPALLRTPSGAVELCPAPIAGEAERLRGRLGAVPDGLLLVGRRHLRSNNSWLHNVPALMGGSNRCTVQVHPEDAARLGLTDGEPARLKGDGGEVEVPVEITDTVRPGVVSLPHGWGHDRPGTRLGVATADPGVNVNQLNAGRLLDPLSGTAVLNGLPILLTPVR
>NZ_CP019779.1|WP_084770435.1|2074858_2076286_-|citrate:proton-symporter
MLTILGFVMIATFLALIMMKKMSPLAALVLIPALFCVLVGQGAHLGDYVIKGIGDLAPTAAMLMFAIIYFGVMIDVGLFDPVVRGILRFCKADPVRVVVGTALLAAIVSLDGDGSTTFMITVSALYPLYKRLKMSLVVMTGVAATANGVMNTLPWGGPTARAATALKLDAGDIFVPMIPALAVGLVAVFALAYVLGRRERKRLGVLTLGDSATVTEAVEEKETEQVLVGAGAGAKGGAPAAARPATGGSAAPGSDGSVQDLDLQGLDPRRPTLRPKLYWFNAALTVALLTLLILQTLPIPVLFLLGAALALTVNFPHMKDQKARIAAHAENVLNVSGMVFAAAVFTGVLTGTGMVEHMARWLVSNIPDALGPHMGLVTGVLSIPLTYFMSNDGFYFGIVPILAEAGAAHGVAPIEIARASLVGQALHMSSPLVPAVYVLVGMAKVEFGDHTRFTVKWAALTSLVVLGASLLFGIV
>NZ_CP019779.1|WP_158541791.1|2074514_2074688_-|hypothetical-protein
MRPRASGTSWRRPGPGGLNTEVLDVVKGIAGRTIAAGHGNAGCVSVIEEMRRSSAKA
>NZ_CP019779.1|WP_084770433.1|2072986_2074381_-|aldehyde-dehydrogenase-family-protein
MKQHDAMYIDGSWRPAEGGSTIEVVDPADGRVIATVPAGSAADVDAAVRAARAALPGWAATPPAERADRLAALHEQLVGRAEEIAETVTAELGSPLAFSRAVHAGVPVAVCGSYAELARTFSFEERIGNSTVLLEPVGVVGAITPWNYPLHQVVAKVAPALAAGCTVVLKPAEDTPLVAQLFAECVEAAGIPAGVFNLVTGLGPVAGQALAEHDGIDLVSFTGSTAVGRRIGAAAGAAVKRVALELGGKSANVILPSADLAKAVAVGVANVMANSGQTCSAWTRMLVHEDRYDEAVALAAAAAAKYVPGERVGPLVSARQRDRVRGYIERGVAEGARLVAGGPEAPCAQGYFVSPTVFADVTPGMTLAQEEIFGPVLSLMKYADEDDAVRIANGTVYGLAGAVWAADEAEAVSFARRLDTGQVDINGGRFNPLAPFGGYKQSGIGRELGRHGLAEYLQTKSLQF
>NZ_CP019779.1|WP_158541793.1|2084916_2086191_+|DNA-methyltransferase
MPGSNRTVREGLRVTAKQDAPRLSDLMPWSVAPLRLGRSWVRAPDPATLRARWKALVDAEDAAARERLFRPSRARTLHSAVGQLPGQATATDRLYRASGPCPEPVRILHGPFDRQWLLPDHRLIDVARPELWRVADEHQLYAVEWGQAPQAPGPAVGCSALLPDGRSPAGRPGRIHPLYRRPGGREPNLAPGLLDLLARHLGRPVGPAELLAWILASAGHSPDGAVVPLTADPEVFGRGLALGERLLWLGTRGAGSGERPRMPGGRRPYVRSALPARGMPATLAYDAEDEALLLGSGRIAPVPAGAWDFHAGGVRVLEAWFAERAGTGADGATPPEDGSLAALRPADWPQEWTSELLELITVLALLAELEPSRAELAGRTADGPHLTADALRAAGVLPAPLAARRPASVLDHHEEGPDGQFALL
>NZ_CP019779.1|WP_033267224.1|2086325_2086589_-|hypothetical-protein
MEQITVRSRARVPAINCGSVASSARLDRHLAVLGGPAIPQREVEGATSLMQELTARDHARTRNGRGARVSLFAPLRRLRRSLFGGHG
>NZ_CP019779.1|WP_084770442.1|2086862_2087669_-|SGNH/GDSL-hydrolase-family-protein
MRLSRFAALTSAFFVTTALALTGASAAASAQLPTATGYVALGDSYSSGVGAGSYDTASGSCKRSTKSYPALWNAAHGPSSFAFTACSGARTGDVVSGQLGPLNASTGLVSITIGGNDAGFADTMTTCALQGESACLSRVAQARTYIDNTLPGRLDTVYGAIAQKAPNARVVVLGYPRFYKIGGSCLAGLSDKSRTAINAAADDINGVTAKRAADHGFSFADVTTTFTGHELCSGSAWLHSVTYPVDESYHPTSAGQSGGYLPVFASAA
>NZ_CP019779.1|WP_084770443.1|2087803_2088514_-|DUF1275-domain-containing-protein
MEPPSGTALIVIMVGLTVATGVLDAVSFLALGQVFTATQTGNLLFLGFGIAGQGGLPVVATVVSLGAFMLGAALGARLESTLARHGRQWFPMALATEAVLLACSALAAWESGPARGLPPGRRYAVIGLMAMAMGMRNVTALRAAAPDLTTTVETRAMTALVSGSLLGRDRRLGYGTHAGPRRLTSVGAMFGGGLLGAVLIGLGTRPMLVILLVAALVAAVALLVPGMARRRAGADD
>NZ_CP019779.1|WP_084770444.1|2089139_2090234_+|GNAT-family-N-acetyltransferase
MDVTVQHPHELSGADRAAWTALQSAAPSQGAPQLANPFLAPEFALAVGRCRGGVRIAVIREDGRPAAFLPFHRSPLGVGRAVGLGVSDAQGLVHRPGFRWDARELLGACGLSVLEFDHLVDGQQPFRNASLRPHASPVIDVDQGYEAYLERLRGQSPKFVRTTLAKERKLGRDVGPVRYVHDERDPEALRTLARWKSAQYRRTGRSDRFAQPWIVRLVRDLFHTRTDSFAGLLSVLYAGDRPIAAHFGPRTRSVLSCWFPAYDAELAKYSPGLVLHLRMAEAAAAASMAYLDMGRGKAEYKDSLKTRELRVAEGWVMRPHPVALGHWAYRAPVRALRNAVLARPELRDPADRLLKRVGRIRSGH
>NZ_CP019779.1|WP_033267220.1|2090702_2091518_+|glycosyltransferase-family-2-protein
MNSFLRPADADEPPLTLLPDHAVYRPVSSHLAIAPPVSVVIPAMNEAENLPYVFKTLPDWIHEVVLVDGNSTDDTVAVARELWPAVTVVTQRGKGKGDALISGFAACTGEIIVMIDADGSADGNEIVSYVSALVSGADFAKGSRFANGGGTDDMTPVRKLGNRVLTALVNAKFGARYTDLCYGYNAFWRHCLDHIALDCAGFEVETLMNIRVVKAGLRVQEIPSHEYNRIHGVSNLRAVRDGLRVLKVIAGERGARRKRLARPALITGDAL
>NZ_CP019779.1|WP_173675850.1|2091559_2092594_+|glycosyltransferase-family-2-protein
MVICVHTEDRWEDILAAVASVRAQSRPAHELLLVVDHHQRLLDRLTEHFARAPGGARPPGPPPAPLRVLANAGPRGLSAGRNTGIAAADGEVIAFLDDDAVAERDWLRHFAAAYADPAVMAVGGRTEPVWESGRRPLWFPEEFDWVVGCTYRGLPAGKVRVRNVLGGNASFRRVAFDLAGGFTTGIGRDGDRRPLGCEETELCIRISQVLPDAVLLIDDRAVIHHRVPAERRRFRYFRGRAYAEGLSKALVARSVGARDGLAAERRHTVRVLPAGVLRGVRDALLGRPGGAARAGAIVAGAAAAAGGYAWGTVRGRARPTPLRPGPVGDPVGGPAAAAHEGAPA
>NZ_CP019779.1|WP_084770446.1|2092590_2093394_+|polysaccharide-deacetylase-family-protein
MSGRPGAVPILMYHAITVAPTPAVRDLSVTPAAFEEQLAVLADGGFTPLTTTALATAWRGGGPLPPRPVLITFDDGYDGVYRHALPALARHGFPATLFVSTGWLRGPYGHGSAPDTTLDWDQVRKLAGAGVEIGGHSHTHPRLDALGDERLRHEVLRCKEIIADEVGAAPESFAYPFGHSSRRVRRTVRGLGFRQALAVGNTLAAHRQGPYALARLTVRRRTGAEEFARIVEGRGLARAFARDRALTKGYAVVRRTRQAVRLCLPDH
>NZ_CP019779.1|WP_107487522.1|2096977_2098261_-|xylan-1,4-beta-xylosidase
MCAGPGGRDRDRDAKGVAPPHPTGPAVGWGFTHTQFSADRGADGATERATRLLAGSPVPQNQHIMGWGARNPEPSPGRYDFADLDRRLALIRRTGGTPVVTLCCAPDWMKGGRAGSTDWSALEKAPDPAHYADFAALAGKIARRYPDVRHFVVWNEFKGFFDDAKGRWDSEGYTRLYNLTYRALKKVNDAVQVGGPYLVMDSYLPGDDTHASRVTGPWGSLDQRTVDALTYWNRHKAGADFLVVDGSSYSKDDRYAPDEFTAARKFADVGRWLRRETGLPLWWAEWYVEVAAGGARGRAPAWSERKRVAAHAAALIEMVAGGATSGFYWNPEDEGGSGNCPGCLWSSTERDDGGRALPMFTLLSRFSRAFPPTARPRAFDTGRATVPGLADDRSALVVNTSDRAGTATVDGRQLTLAGYEVRWVDRS
>NZ_CP019779.1|WP_033267216.1|2098476_2099589_+|AAA-family-ATPase
MCADHVPPSAAEESLPLRLTMDDSDSPSDVIDALFLGRFTKGEQPYSRSRSVDRVRSGLTLLPPGARILRSARDEDRSATLAEGDGYTLLVSRWNRGADVSVTAVTDELAENVLGQAADGAEDEPAPQPENVPMGFWYFSPRRGPHRTSRQISAGTWEEIRPNYTAPVAEAMDRLMKVAPEEISGRLLLLHGPPGTGKTSALRTLARSWRDWCQVDCVLDPERLFNDVGYLMDIAIGEDDSTGKGRWRLLLLEDCDELIRGEAKHAAGQALSRLLNLTDGLLGQGRNVLVGVTTNEDLERMHPAVIRPGRCLARIEVGPLTRAEAAGWLGTDRGIGRDGASLAELYALRRGTGPASVPPQDSGADAGLYL

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Crispr_ID: NZ_CP019779_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_2

2458838-2458932

Orphan

Consensus_repeat	Method
TGCGCGGAGGCCGCGCCGTGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019779_2

>merge|NZ_CP019779|2|2458838-2458932|CRISPRCasFinder
TGCGCGGAGGCCGCGCCGTGGTGACCGGGCCCGGCCTGCGGTGACGCGCCGCCGTGGTGGCCCGCCCCGGTCTGCGGGGAGGCCGCGCCGTGGTG

>NZ_CP019779|2|2|2458838-2458932|CRISPRCasFinder
TGCGCGGAGGCCGCGCCGTGGTG	ACCGGGCCCGGCCTGCGGTGACGCGCCGCCGTGGTGGCCCGCCCCGGTC
TGCGGGGAGGCCGCGCCGTGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_077192188.1\|2464014_2464257_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084770838.1\|2467898_2468531_-\|TIGR03085-family-protein	unknown	unknown	gnl\|CDD\|132129
NZ_CP019779.1\|WP_077192187.1\|2463362_2463797_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP019779.1\|WP_084770837.1\|2467407_2467785_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP019779.1\|WP_084776116.1\|2464342_2465062_-\|TIGR02234-family-membrane-protein	unknown	unknown	gnl\|CDD\|378200
NZ_CP019779.1\|WP_033269441.1\|2448856_2449588_-\|VIT1/CCC1-transporter-family-protein	unknown	unknown	gnl\|CDD\|153124
NZ_CP019779.1\|WP_157850164.1\|2467100_2467241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084770833.1\|2459901_2460720_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP019779.1\|WP_033269402.1\|2462380_2463190_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_CP019779.1\|WP_033269397.1\|2466684_2467068_-\|phosphoribosyl-AMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234598
NZ_CP019779.1\|WP_077192186.1\|2460719_2462012_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP019779.1\|WP_084770815.1\|2442511_2443972_-\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NZ_CP019779.1\|WP_084770816.1\|2443964_2448566_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP019779.1\|WP_084770818.1\|2449865_2451032_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP019779.1\|WP_084770829.1\|2457597_2458662_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|237284
NZ_CP019779.1\|WP_107487526.1\|2451109_2452330_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP019779.1\|WP_084770824.1\|2453666_2455136_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP019779.1\|WP_084770826.1\|2456432_2457515_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP019779.1\|WP_084776115.1\|2455269_2456436_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP019779.1\|WP_084770822.1\|2452326_2453670_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084770838.1\|2467898_2468531_-\|TIGR03085-family-protein	gnl\|CDD\|132129	TIGR03085, TIGR03085, TIGR03085 family protein. This family, like pfam07398 and TIGRFAMs family TIGR03084, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized. [Hypothetical proteins, Conserved].	9.06419e-82
NZ_CP019779.1\|WP_077192187.1\|2463362_2463797_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	2.91258e-13
NZ_CP019779.1\|WP_084770837.1\|2467407_2467785_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	0.00300481
NZ_CP019779.1\|WP_084776116.1\|2464342_2465062_-\|TIGR02234-family-membrane-protein	gnl\|CDD\|378200	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp). Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.	5.26599e-31
NZ_CP019779.1\|WP_033269441.1\|2448856_2449588_-\|VIT1/CCC1-transporter-family-protein	gnl\|CDD\|153124	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	2.31513e-92
NZ_CP019779.1\|WP_084770833.1\|2459901_2460720_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	2.04841e-115
NZ_CP019779.1\|WP_033269402.1\|2462380_2463190_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	5.08623e-121
NZ_CP019779.1\|WP_033269397.1\|2466684_2467068_-\|phosphoribosyl-AMP-cyclohydrolase	gnl\|CDD\|234598	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.	6.31514e-68
NZ_CP019779.1\|WP_077192186.1\|2460719_2462012_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP019779.1\|WP_084770815.1\|2442511_2443972_-\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NZ_CP019779.1\|WP_084770816.1\|2443964_2448566_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP019779.1\|WP_084770818.1\|2449865_2451032_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.30597e-38
NZ_CP019779.1\|WP_084770829.1\|2457597_2458662_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|237284	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed.	3.03974e-112
NZ_CP019779.1\|WP_107487526.1\|2451109_2452330_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.4416e-23
NZ_CP019779.1\|WP_084770824.1\|2453666_2455136_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.9639e-34
NZ_CP019779.1\|WP_084770826.1\|2456432_2457515_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	1.99524e-25
NZ_CP019779.1\|WP_084776115.1\|2455269_2456436_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	4.49601e-142
NZ_CP019779.1\|WP_084770822.1\|2452326_2453670_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	7.49923e-41

>NZ_CP019779.1|WP_084770829.1|2457597_2458662_-|prolipoprotein-diacylglyceryl-transferase
MDLAFIPSPSVGVVHLGPIPLRGYAFCIIIGVFVGVWLGNKRWIQRGGRSGTVADIAVWAVPFGLVGGRLYHVITTYEPYFGKNGHPLDAFKVWEGGLGIWGAVALGAVGAWIGCRRRGIPMPAYADALAPGLALGQAIGRWGNWFNQELYGKPTDVPWALKISSDPAIGRIGGTYHPTFLYECLWCIGVAALVIWADKRFRLGHGRAFALYVAAYCAGRAWIEYMRVDEAHHILGLRLNVWTALIVFVLAVVYFVVSAKRAPGREEVVEPGALEERAAAEAAAAESAGSDSDAATEADGADGGDGAEAPAGKAAAAKSAAEAEAEDGPEAVDPAASPADADAKPAGSGSTKKS
>NZ_CP019779.1|WP_084770826.1|2456432_2457515_+|CoA-ester-lyase
MRPAPPPREPAARTPLTWLYVPGDRPEVVAKALHCGADVVVVDLEDAVSPDRKDRALRATAELLSDPAPGTAPVHVRVNALDGPLAETEIRTLAALPGLAGLRLPKVQGPADIHRAAGWATTAARPAAGPALTGRLATGRRARTPGAAVAPLTTGTTHPAHPARAARTARTARTAAPGSATATLTPAAAPAPAALPATPALYALLESALGIEHAFAIATAHPALRGIALGEADLATELGVRDEAGLAWPRSRTVVAARAAGLAPPPQSVYPDVADLDGLARSCARGRALGFLGRAAIHPRQLPVIEAAHLPSPEEVEAAAEIVRAAGAEGGAQALPDGRFVDAAVVAGARRVLSLAERRN
>NZ_CP019779.1|WP_084776115.1|2455269_2456436_+|CoA-transferase
MRVLDLATLFAGPLAATLLGDFGAEVIKVEHPRRPDPSRGHGPAKDGIGLWWKLLGRNKKTLTLDLSHPGGRDVLLRLAAGTDVIVENFRPGTLEKWGLGWAELSAVNPRLVLARVTGFGQFGPYARRPGFGTLAEAMSGFAAITGEPDGPPTLPPFGLADAITALTTAYAVMAALRARDTGGRGQVIDLALIEPMLTVLGPHPLWYDQLGHVQPRTGNRSANVAPRNTYRTADGSWVVVSTSAESVAERVMRLVGRPEVIDEPWFGTGAGRARHADELDAAVGDWIARRDRAEVLAAFEKAEAAVAPVYDIRDVLADPQYRALGSITEVPDEELGTLRMQNVLFRLSETPGAIRWAGRPHGADTDEVLSGLGLGEAEIADLRGAGAL
>NZ_CP019779.1|WP_084770824.1|2453666_2455136_+|ADP-ribosylglycohydrolase-family-protein
MTTTAAGTARTAPAATGPPLRVTWVQPEDLLGHELRQAAEDGRDATGIARRWQAAGGPPAPDRAGASPGPAGPSLRRLATTLLDEIALLPSPLADDEPTDLTAIQRACAPAPLPRRAGARPDQDRTAARLEAAWLGRAAGCLLGKPVEKLPLDGIRALARSTGNWPLTSYFTGAGLDPEVAARYPWNRRSAATSLAENIDGMPEDDDLTYPLLGLLLLERHGPGFTTADVARLWLDELPAGRTFTAERVAYRNLLDGIEPPHTARHRNPFREWIGAQIRADVHGWTRPGDPAGAAAQAWRDAVLSHTGNGVYAAMFTAAALAEAAGGRADVHGALRAGLAVIPPRSRLARAVRLGIAAAREEPTGTAEGFAAVADRLHTVHGHHHWVHAVPNAALLAAALTHADGDFAGSICRAVSGGWDTDSNGATAGSLAGLLAGSPAALPESWTAPLRGRLTSSVGGQAVHAFGTLARRTAALVVRTPDRPEAPAP
>NZ_CP019779.1|WP_084770822.1|2452326_2453670_+|ADP-ribosylglycohydrolase-family-protein
MTYTSERTPGVPGVPDPQATQVLPVTALKPTVTPVTSGPPVTPSGTPRTPEAVTPGPPVTPSLEDRAIGALVGAAVGDALGGPVEGRTPEEIVKRHGGPVEGIVGPFHDDWRTARPLAPYHKGDGHVTDDTLMTHALVRVYESVRDHLDAYDIADHLVPDLIGTPRWIPELEAEALPLQRIFLAEKWIVARLHYGHADPREAGVGNIVNCGAAMYMAPVGVVNAGNPDRAYAEALDIAGAHQSSYGREAAGVFAAAVAAAFVPEATPSSVVVQALRLAKDGTRAAIEAVCEAAAAVDDPASAGVALRAAVAPFDTVGPDYRNPSLGARRPSRLHSVEELPIALGMLLVGRGDYRTTVLGSVNYGRDCDSIATMSGALAGALRGASAVPDEWSREVARASRLDLQAPGAALATVAREIFTRDRARARTHEQAFTAISAIPAMTEAGER
>NZ_CP019779.1|WP_107487526.1|2451109_2452330_+|ADP-ribosylglycohydrolase-family-protein
MEGLLLGLAAGDAAGWPAARHRAARMPEWTRRLTRELDTFAEQNATTTLPVPIALNQPPEPLRLGPSDDAEWAAFTAESVLTAADALLSDLGRDRRMRAALDLAWNALANEVAAAADRAPEVESAVLPLRARISVRAGLGNLAAGLRPPATGHDNPHFFDDAACVRAAVLAVVHPGEPAAAADLAEYDARYTQDGDGVHGARAMAAAVAAALGGRPAADCVDTALGQLPEGTEIRRNALHAVRLAEAVAADRPGRCGHHRHGHGFALVPVLEHEIVDHVYSYGIAAAETVPVALALALATDGQVTEAVPAAACLSRVADSAPALAGALTGALGGSTALPRTWRNACRVLSGCALPRLAGTDLVELAGLLARTELTAPQTPPDTVAEARPGPHHSPTVPSVEGLIRT
>NZ_CP019779.1|WP_084770818.1|2449865_2451032_+|ADP-ribosylglycohydrolase-family-protein
MSAAHPEPPQPGSPGAAGDVRDRARGALLGLAVGDALGAPAENMKPSQIRRRWGRIEGYVEDEPAGTDDTEYAIFSGLLLAAHGSALTVAHVEAAWHRWIADRDEGPFRGAGFSERGTLENLRRGLAAPISAQHRHAWSDGLAMRAAPFGVFAAGRPTEAARLVAIDGTVSHDGEGIYGGRAVAAGVAAAMVALPQGPSAGPRPGGTSITDTVIAAALSVVPEDSWTARSLRRAISAAQRCRHDPGITRLGTERAVRSAVVVGGYPWTDLAPEAVGLAFGAFAAAHGDFAGSVLTAVNMGRDADTTAAVAGALAGALCGAAALPETWTAAIGPARGSCLPSMAGYHVLDIADLLAPGGTAAAPAPAAGTGAAYGADAGTGAPAGVRAG
>NZ_CP019779.1|WP_033269441.1|2448856_2449588_-|VIT1/CCC1-transporter-family-protein
MEIMDAAAPTHVAHRDNHTHRDVNGGWLRPAVFGAMDGLVSNLALMTGVAGGALSQQTIIITGLAGLAAGAFSMAAGEYTSVASQRELVQAELDVERAELRKHPADELEELAALYESRGVEPALARQVAEQLSRDPEQALEIHAREELGIDPSDLPSPAVAAISSFGSFALGALLPVLPYLLGASAIWPAVLLALVGLFACGAVVARVTARSWWFSGLRQLALGGAAAGVTYALGALFGTVVG
>NZ_CP019779.1|WP_084770816.1|2443964_2448566_-|glutamate-synthase-large-subunit
MRFASTHSATTDGATAAWSPMDGRPAQQGMYDPRNEHDACGVGFVATLTGEASHALVEQALTVLTNLEHRGATGSEPDSGDGAGILLQVPDAFLRENVTFELPEAGGYAVGIAFLPSEAQEAAAAVSAIEKIAAEEGLDVLGWRVVPVAPQLLGNGARATMPAFSQLFVGDGENTGLALDRKAFALRKRAEREAGVYFPSLSARTLVYKGMLTTGQLEPFFPDLSDRRFATAIALVHSRFSTNTFPSWPLAHPYRFVAHNGEINTVKGNRNWMRARESQLASELFGERDLARIFPVCTPDASDSASFDEVLELLHLGGRSLPHSVLMMVPEAWENSTAMDPARRAFYQYHSTLMEPWDGPACVTFTDGTQVGAVLDRNGLRPGRYWVTDDGLVVLSSEVGVLDIDPAKVVRKGRLQPGRMFLVDTAEGRIIEDDEIKAQLAAEQPYQEWLDSGLIELADLPEREHIVHTHASVTRRQQTFGYTEEELRVILAPMAKAGAEPIGSMGTDSPIAALSERPRLLFDYFTQLFAQVTNPPLDAIREELVTSLISSLGPQGNLLEPTAAACRSVTLPFPVIDNDELAKLVHINADGDMPGMKAVTLSGLYRVSGGGESLAARIEEICAEADAAIDDGARLIVLSDRHSDAEHAPIPSLLLTAAVHHHLIGTKERTKVGLLVEAGDVREVHHIALLIGYGAAAVNPYLAMESVEDLVRAGTFLPGVDTETAIKNLIKALGKGVLKVMSKMGISTVASYRGAQVFEAVGLDEEFVAKYFHGTATKIGGAGLDVIAKEVAARHAKAYPASGIAATHRALEIGGEYQWRREGEPHLFDPDTVFRLQHSTRSRRYDIFKQYTERVNEQSQRLMTLRGLFGFKSDRPSIPIEEVEPASEIVKRFSTGAMSYGSISQEAHETLAIAMNQLGGKSNTGEGGEDPERLYDPARRSSIKQVASGRFGVTSEYLVNSDDIQIKMAQGAKPGEGGQLPGHKVYPWVAKTRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARIHVKLVSEVGVGTVAAGVSKAHADVVLISGHDGGTGASPLTSLKHAGGPWELGLAETQQTLLLNGLRDRIVVQTDGQLKTGRDVVIAALLGAEEYGFATAPLVVSGCVMMRVCHLDTCPVGIATQNPTLRERFSGKAEYIVNFFQFIAEEVRELLAELGFRTLEEAVGHAELLDTGKAVDHWKAQGLDLAPLLHVPELPEGAVRHRITAQDHGLEKALDNELIKLAADALAADTAEAAQPVRAQVAVRNINRTVGTMLGHEVTKKFGGAGLPDDTIDITFTGSAGQSFGAFLPRGVTLRLEGDANDYVGKGLSGGRIVVRPDRGADHLAEYSTIAGNTLAYGATGGELFLRGRVGERFCVRNSGATVVSEGVGDHGCEYMTGGNAVVLGETGRNFAAGMSGGFAYVIDLDPANVNKEMTGAVNALDDADKQWLHDVVRRHQEETGSTVAAKLLADWDAAAARFSKVIPPTYQAVLVAKEAAELAGLSESETHEKMMEAATNG
>NZ_CP019779.1|WP_084770815.1|2442511_2443972_-|glutamate-synthase-subunit-beta
MADPKGFLTHEREIAKTRPVEERVKDWNEVYQPGSLLPIISKQASRCMDCGIPFCHNGCPLGNLIPEWNDYAYREDWTEASERLHATNNFPEFTGRLCPAPCEAACVLGINQPPVTIKNVEVSIIDKAWDNGDVTPQPPERLSGKTVAVIGSGPAGLAAAQQLTRAGHTVAVYERADRIGGLLRYGIPEFKMEKRHINRRIEQMRAEGTKFRTEVEIGRDIDAKKLRKRYDAVVIAAGATTSRDLPVPGRELNGIHFAMEYLPLANKVQEGDLTVAPITAEGKHVVVIGGGDTGADCVGTAHRQGAASVTQLEIMGKPGEERNANQPWPTFPMLYKVTSAHEEGGERLYSVSTTHFEGDEDGNVQWLHLTEVEFKDGKPEPKPGTERKLPAQLVTLAMGFTGTDQQNGLVEQFGLELDARGNIARDSDFATNVPGVYVAGDAGRGQSLIVWAIAEGRSAARGVDRFLTGVSALPAPIKPTDRALTV
>NZ_CP019779.1|WP_084770833.1|2459901_2460720_-|tryptophan-synthase-subunit-alpha
MAGNIELLNSVLAQARTENRAALVGYLPAGFPTVDGGIRAMTEMLDGGCDIVEVGLPHSDPVLDGPVIQTADDIALRGGLKIVDVIRTVREVHAATGAPVLCMTYWNPVDAYGVERFAADLAEAGGAGCILPDLPVEESEVWRKAAEQHGLATVFVVAPSSRDERLAKITAAGSGFVYAASLMGVTGTRESVGREAQDLVARTRATTELPVCVGLGVSTPAQAAEVAAFADGVIVGSAFVKRLLVAGDDLTAGLAGVRTLAGELAEGVRSRS
>NZ_CP019779.1|WP_077192186.1|2460719_2462012_-|tryptophan-synthase-subunit-beta
MSSDFFLPDPEGRVPTPEGYFGAFGGKFIPEALVAAVDEVAAEYEKAKADPAFAAELDDLLVNYTGRPSALTEVPRFAEHAGGARVFLKREDLNHTGSHKINNVLGQALLTKRMGKTRVIAETGAGQHGVATATACALFGLECTIYMGEVDTQRQALNVARMRMLGAEVIAVKSGSRTLKDAINEAFRDWVANVDRTHYLFGTVAGPHPFPALVRDFHRVIGVEARRQLLERAGRLPDAALACVGGGSNAIGLFHAFLPDTGVRLIGCEPGGHGVETGEHAATLTEGTPGILHGSRSYVLQDEDGQITEPYSISAGLDYPGIGPEHAYLKDVGRAEYRAVTDDAAMQALRLLSQTEGIIPAIESAHALAGALEVGRELGPDGLLLINLSGRGDKDMDTAARYFGLYDDDAAQGRGADVNGAVQPTGEGEK
>NZ_CP019779.1|WP_033269402.1|2462380_2463190_-|indole-3-glycerol-phosphate-synthase-TrpC
MSVLDEIIDGVRADLAERQARVTLDELKERAQKARPAMDGVAALKGESVTVICEVKRSSPSKGALAAIADPAGLAADYEAGGAAVISVLTEQRKFGGSLADLEAVRARVDIPLLRKDFIVTAYQLWEARAYGADLALLIVSALEQEALVSLIERAESIGLTPLVEVHDEEEVARAVDAGAKIIGVNARNLKTLEVDRGNFARIAPEIPDHIVKIAESGVRGPHDLIAYANDGADAVLVGESLVTGKDPRTAVADLVAAGSHPAIRHGRS
>NZ_CP019779.1|WP_077192187.1|2463362_2463797_-|DUF2752-domain-containing-protein
MAQARPDARPRGGPARRLAPPLGALAATAAAFAYVGAVDPNRPGHYPVCPLLHLTGLYCPACGGLRSAHAVAHGDLTAALGANALAVAGYAACAVFWVLWLGRAARGRPTAGPRPRAVHWWALAALLLAFTVVRNLPFGSGLAP
>NZ_CP019779.1|WP_077192188.1|2464014_2464257_-|hypothetical-protein
MSSSGHGHTPAAWTGVIISFIGFCVAGAFIVLDSVPGFWAGIVLIGLGAVAGGLMRAAGLGQEPKRSAAKPAAQAQPQEG
>NZ_CP019779.1|WP_084776116.1|2464342_2465062_-|TIGR02234-family-membrane-protein
MSAAPQTRTDPEPSDETELPDGAAPPGGDATEDAPAGPARGADRGARRSLALALLAGAAGAGLALLASGRIWARGSAQLAQGELPRSVTGADVTGVPGALAVVGLAALVAVFAVRRAGRTAVAALLALSGTGIVAAALLGNADTSALREKAATAVGLAGADVHHVTHTGWPWVAAAGGLLLLLAGLLALVRGRHWPAMSGRYERTPGGARGPRRTPPAPDLDRPEEIWKSLDRGEDPTR
>NZ_CP019779.1|WP_033269397.1|2466684_2467068_-|phosphoribosyl-AMP-cyclohydrolase
MTSSRSTAASSLDPAVAARLKRGADGLVPAIAQQYDTGEVLMMGWMDDEALHRTLTTGRCTYWSRSRQEYWVKGDTSGHFQYVKSVALDCDADTVLVKVDQVGAACHTGDRTCFDADVLATEDHRGQ
>NZ_CP019779.1|WP_157850164.1|2467100_2467241_+|hypothetical-protein
MHPQQPPVPPPPDPDRAARVAARVLGAVFVAAVVVGVVLAVVMLGR
>NZ_CP019779.1|WP_084770837.1|2467407_2467785_-|nuclear-transport-factor-2-family-protein
MQEETARSAIDTFISAFNASDDSFVTALLSQALTSDVVFWGPLGRSEGIEAVERFVLDIRRHPAGTGTMVRCSAVDMPGEWARYQWVFTTPDGGPRLAGTDVVHLRRSLIDQVIVFAGEIEPSAS
>NZ_CP019779.1|WP_084770838.1|2467898_2468531_-|TIGR03085-family-protein
MSTHAKRERLLLADLLESAGPDAPTLCENWTTRELAAHLVVRERRADAAGGILVKPLAARLERVQAEFAARPYEELLRLIRTGPPRLSPFALKPIDEASNTVEFYVHAEDVRRAQPDWAPREPDPVFADALWSRIERMARVLGRKSPVGLVLRRPDGRTAVAHRGTPVVTVVGEPGELTLFAFGRQDAAHVELDGDKEAVARLRTAQLGV

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Crispr_ID: NZ_CP019779_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_3

2767127-2767234

Orphan

Consensus_repeat	Method
GGCTCGGTGGGTGGGGGTTGCGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019779_3

>merge|NZ_CP019779|3|2767127-2767234|CRISPRCasFinder
GGCTCGGTGGGTGGGGGTTGCGCGGCGCCCCGGGCGCCGGTGGCTCGGTGGGTGGGGGTTGCGCGGCGCCCCGGGCGCCGGTGGCTCGGTGGGTGGGGGTTGCGCGGC

>NZ_CP019779|3|3|2767127-2767234|CRISPRCasFinder
GGCTCGGTGGGTGGGGGTTGCGCGGC	GCCCCGGGCGCCGGTGGCTCGGTGGGTGGGGGTTGCGCGGCGCCCCGGGCGCCGGT
GGCTCGGTGGGTGGGGGTTGCGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084771058.1\|2764059_2764869_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP019779.1\|WP_158541799.1\|2760151_2761972_-\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|375611
NZ_CP019779.1\|WP_084771067.1\|2775909_2776785_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|178455
NZ_CP019779.1\|WP_084771064.1\|2772019_2773288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771060.1\|2765571_2767095_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP019779.1\|WP_084771061.1\|2767327_2768125_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP019779.1\|WP_158541801.1\|2763288_2763477_+\|CD225/dispanin-family-protein	unknown	unknown	gnl\|CDD\|377375
NZ_CP019779.1\|WP_084771053.1\|2758056_2758416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771066.1\|2774742_2775819_-\|Zn-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176240
NZ_CP019779.1\|WP_084771063.1\|2770867_2771743_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP019779.1\|WP_084771052.1\|2757338_2757821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771051.1\|2756613_2757342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_158541800.1\|2762176_2763094_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_CP019779.1\|WP_173675714.1\|2768191_2768857_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP019779.1\|WP_084771065.1\|2773734_2774676_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|181120
NZ_CP019779.1\|WP_164993269.1\|2773451_2773619_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771050.1\|2755668_2756571_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270408
NZ_CP019779.1\|WP_084771062.1\|2768930_2770124_-\|bifunctional-RNase-H/acid-phosphatase	unknown	unknown	gnl\|CDD\|180903
NZ_CP019779.1\|WP_084771054.1\|2758517_2760155_-\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|379418
NZ_CP019779.1\|WP_084776134.1\|2770127_2770976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224495

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084771058.1\|2764059_2764869_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	9.5806e-24
NZ_CP019779.1\|WP_158541799.1\|2760151_2761972_-\|DUF4231-domain-containing-protein	gnl\|CDD\|375611	pfam18181, SLATT_1, SMODS and SLOG-associating 2TM effector domain 1. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often C-terminally fused to the SLATT_3 family, and is typically operonically linked to either inactive TIR domains or SLOG domains which could act as regulators of the SLATT channels. In relatively rare instances, it is genomically linked as a standalone domain to the RelA/SpoT nucleotide synthetase and the predicted NA37/YejK sensor domain.	6.64427e-16
NZ_CP019779.1\|WP_084771067.1\|2775909_2776785_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|178455	PLN02864, PLN02864, enoyl-CoA hydratase.	8.98286e-68
NZ_CP019779.1\|WP_084771060.1\|2765571_2767095_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	4.92709e-73
NZ_CP019779.1\|WP_084771061.1\|2767327_2768125_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	3.05464e-72
NZ_CP019779.1\|WP_084776134.1\|2770127_2770976_-\|hypothetical-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	4.38862e-36
NZ_CP019779.1\|WP_084771066.1\|2774742_2775819_-\|Zn-dependent-alcohol-dehydrogenase	gnl\|CDD\|176240	cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	6.67195e-160
NZ_CP019779.1\|WP_084771063.1\|2770867_2771743_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	2.09115e-83
NZ_CP019779.1\|WP_158541800.1\|2762176_2763094_+\|TIR-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	7.21117e-18
NZ_CP019779.1\|WP_173675714.1\|2768191_2768857_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	7.46207e-97
NZ_CP019779.1\|WP_084771065.1\|2773734_2774676_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|181120	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.30112e-156
NZ_CP019779.1\|WP_084771050.1\|2755668_2756571_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.44605e-66
NZ_CP019779.1\|WP_084771062.1\|2768930_2770124_-\|bifunctional-RNase-H/acid-phosphatase	gnl\|CDD\|180903	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional.	0
NZ_CP019779.1\|WP_084771054.1\|2758517_2760155_-\|DUF4231-domain-containing-protein	gnl\|CDD\|379418	pfam14015, DUF4231, Protein of unknown function (DUF4231). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 148 and 288 amino acids in length.	3.60438e-05
NZ_CP019779.1\|WP_158541801.1\|2763288_2763477_+\|CD225/dispanin-family-protein	gnl\|CDD\|377375	pfam04505, CD225, Interferon-induced transmembrane protein. This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.	4.18401e-11

>NZ_CP019779.1|WP_084771060.1|2765571_2767095_-|RNB-domain-containing-ribonuclease
MPRLHMHVTDAADAPLRAALHELRGTLEIPHHFPPTAQAEAESAARAPRIPAADGAVATEHTLEDATDLPLFTLDPPGSLDLDQALFLSRRPGGGYRIHYAIADVASFVTPGGALDAEAHHRVTTLYFPDERVPLHPPVLSEGAASLLPDRDRPAVLWQLDLDAEGALTSTSVRRALVRSRAALDYAGVQRVLDDETAEEPLALLREIGLLREEQEVARGAISLQVPEQEIVEHDGRYTLAYRAPLPAYGWNAQISLLTGMAAAQLMLASGTGILRTLPSPKLSTSAEPEGSPSRRGSVARLRLTARALGIDWPHHTSYSALIRTLDPRRADHAAFLQDCTALLRGAGYTVFDGSAPPPADALHAAVAAPYAHATAPLRRLVDRYTSELCLAASAGAEPPAWVRSALPALPREMEAGTQRANQVERACVDLVEAALLRDRVGETFEALVVDIQDKDPTHGTVHLYDPAVIGPVETAPEGPALPLGHHIQVRLAEAEPGRAPVRFTPA
>NZ_CP019779.1|WP_084771058.1|2764059_2764869_+|MerR-family-transcriptional-regulator
MRIGELAGLVGVTTRAVRHYHHVGLLPEPERRANGYREYGLRDAVALARLRRLTELGLGLEEVRDVLADDSGRELHEVLAELDADLARQEDEIRARRARLAALRRQAEEHGGLPAEGPVSDELAAVFREMARTSAARPGPEPAMAAKEREMLALLESTDDKAGGRMTELLGNLASAPGAMERAYEVYGLLDALAEAAPDDPGVAPAAQALADCIPDTVVAELGGEHWARAADAGRETDGGFMAAYYAHFTPAQAEALRRAIELVAERAR
>NZ_CP019779.1|WP_158541801.1|2763288_2763477_+|CD225/dispanin-family-protein
MVFLLFWFILGAIAMYYSSQVNARWRCGDVAGARQASKTALILNLIGIGVGLLFWILVIAAG
>NZ_CP019779.1|WP_158541800.1|2762176_2763094_+|TIR-domain-containing-protein
MTATTPEAASGRRLFVSYARPDSEAVQRLVEVLRALHHVPWVDRELESEGGKPWWDRILAEIEACDGIIVVLSPQLFDSVPAEREREYANELGKPPLPVMVEPVTPDILPRELSARQFVDFTRGGPLAGAMLASAVAGLPPAPPLPDPIPKRPDVPSSYLGDLRDRVRAPALSLEEQIHLITELRLRLDLERERQAVVTLLRELQQRRDLCHATWQLLDPLLKDVRGESSEPAPPGDERPAEAGPASGPATPTNPDQGLGTSTHRTPPPGWYPDPSGRHQLRWFWNGCWTRQASDHGKVVDDPNF
>NZ_CP019779.1|WP_158541799.1|2760151_2761972_-|DUF4231-domain-containing-protein
MTFGSDDERAPRGRPDGDVRAVIAVDHPGDPADVLSPLCLSPPSGKLPVLLVSGGADEPRPRVTGKPAAALGGAVLQAVEVSGAALVDDAVGSVTPAALAAARARGSRPPPVVLGVMPGRRAERPGGTGGDGAEPEPDGSPVPEPDRSHVLVLDGADGTAAAAWKPTVATSLAAGAPVVMVLAGGGAVARAELLAAVRRGIPVFVLGWSGGLARQLAERRQRVRRTGRHRRLPHRPHRPVPREATDWEAEAETEEIVRHGDLRVLAEHDSGALARRLAWELQDEPLLKAAWQTFATYDRLASRLRRAFQRMQALILALGVFATLIALIDAEIGGRRLHWVVVATPAAVSVLIAWSSRHARGPRWIALRAAAEEVKAEIYLHRTLADADDVRHGSGRPSGDRCQLLRRLTDIEGRLVRTNAATAPLTPYDGPLPLPVRGGGNTDDGLSPLTAARYVEIRLKGQVAYYHSRVRHLHRVRSLLEALAISAGAAGTLLASVGVDPWIGFTTGLSTAALAALGYLQADNIIMAYNRAAGDLEVLRQGWEMRGPEEQGKRPLLTLVMKTEAVLHGERARWVHQMSEVLQALRERQELEVKKPVPHGGSKGRS
>NZ_CP019779.1|WP_084771054.1|2758517_2760155_-|DUF4231-domain-containing-protein
MNPKSSATARLTAGEGRLPFILRVGVTGHRRLDHPDDLRPAIHEAVRGLGARLLGAKAPLPPVLVLSALAEGADRLAAGELLTGPGAMLEAVLPLPPEDYLNDFGSAESRADFFALLGRSAATWQAPPSTTREEAYERAGRRIVDRSDVVVALWDGRPARGRGGTATVVSYAEDRGVPLAWIRTAGDPGPEYRLDDVRARGMRAAAYEFRQYNAMRVGDFPRRVSTERDRLRPGPGGRSTAFAQAHEVVADWIVPYFVRADTLASRLHRQFRLMSAAIFLMAAAAVVAVATQVTFLPRYDWITAVEVVLLALLLVLPVLNHRRRVLDRWISYRFLAERLRSEYFFALCGTRSHRVRPGSGSQFFDPSEAWVRRAVMEVVAVRPAVRTAPSDVHLLKQYLCRHWIRSQIDYHRKAARRQGAWETRLYLVTSVIFGITLIAAVLHMLGTGQDADRDSTWGLLLIVLSIGMPTLGAAVHGIRTQAQFRQHCQRYRRMAQLLADLETTLQEARTLERIREVAIETERVMREETSAWFGVMRFHDIELIS
>NZ_CP019779.1|WP_084771053.1|2758056_2758416_-|hypothetical-protein
MRRVLTAAATAAAALMGSVGAAQAVELPKAPDVGGLSAVDTGGVGEAAGGAAETAGRATGAVAETAGGAVGAAAPVTGETTGAAAPAVGQGAGSAAEMLGETAKVGTEGALPVPGAGLS
>NZ_CP019779.1|WP_084771052.1|2757338_2757821_-|hypothetical-protein
MSELATVSAEIAPYLALAANSLGTSVITAAQQRIAERTVTAGEGFFRRLLRRGDDAGGELDGGAGQPLLDADRADALDALLASLTDQERQVLSAAVTSWLRAPAARRDAPHLLDQVTRLASFAGGSTVYNTPTATGQGSIAAVEIHGDIHMGGSDGRGGA
>NZ_CP019779.1|WP_084771051.1|2756613_2757342_-|hypothetical-protein
MSRAGGGGDVYNSPTAHGDHSIAANDIRNVIIRWVMHPSARWLPLLLACAAVVAAGARWPDGPARQYVLWGVLTGLSLLAAAARVLDRRPRDALVIGVLSLVSVLATVGGWLTFQQVVAHGEIDVTGQVRTEGRQPLDDDAHRTLTLRLDAPALAEPRDALRLTLAIADHDPAGPTCLPDTRATLSLLTSGAAAQPTDVRPGGTADFSLGARAGAVRIGVRLHTARGCRMDVRATGAVLHDQ
>NZ_CP019779.1|WP_084771050.1|2755668_2756571_-|transporter-substrate-binding-domain-containing-protein
MTTGAARAPHGRRRARRHRALAAAALATLAASAAACGTSEPPSLFASGKVSVGAKNDQPGTGVVHTYKFSGFDITVARQILASVGAEPDFGIVPSEDRSAVLTGKKKDLVVATFSITVDRMKDLDFAGPYASTYQGILVRRNDHRIRKPDDLFGKRVCTWPGTTSASTLEGPEYSRIAVYERPDASSCLADLKVKKVADAVSTDQMILYGFTQENPDLRVVPDITYGSANHYGIAMNKGHRKDCLRLRDALREYVGSNTWSHDFSTSLWSIPKADPTWETDYRPREETIDALSCRDRPSA
>NZ_CP019779.1|WP_084771061.1|2767327_2768125_+|peroxide-stress-protein-YaaA
MLVLLPPSEGKAAEGAGAPLELGGLSLPALTEARRAVLEELVELCAADGTKAQEVLGLSDGLRGEIAKNAGLRTAAARPAGEIYTGVLYDALGLASLDARARRLAERSLLVFSGLWGAVRIGDRIPSYRCSMGVKLPGLGALGAYWRAPMAEVLPEAAGDGLVLDLRSAAYATAWKPKGEVAGRTATVRVLQSKIVDGVEKRSVVSHFNKATKGRLVRDLLSAGLTPAGPAELVEALRELGYAVEAQAPAKGGKPWALDVIVTEL
>NZ_CP019779.1|WP_173675714.1|2768191_2768857_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MGGVTSAAASPAPASAELSVLGLAPVIPVVVLDDAADAVPLARALVAGGLPAIEVTLRTPAALDAIRAIAEEVPEAVVGAGTVLTPEHVDAAGAAGARFLVSPGWSPRLLRAMRVCGLPFLPGVSTASEVVALLDEGVTELKFFPAEAAGGTAYLKSLAAPLPQARFCPTGGIGLASAPSYLALPNVACVGGTWMLPADALAAKDWDRVRRLAKEAAELGN
>NZ_CP019779.1|WP_084771062.1|2768930_2770124_-|bifunctional-RNase-H/acid-phosphatase
MPRTLIVEADGGSRGNPGPAGYGAVVLDPETGEALAEAAEFLGTATNNVAEYKGLVAGLRAARALDPEARIHVRMDSKLVVEQMSGRWQIKHPDMKPLAAAARAVFPPEQVTYEWIPRAQNKHADRLANEAMDAGKNGKQWEPRDSRAALDTAAAPARSAAARAADEAAEAAEAPEVAEAPAPGWGAPDLGVPATLVLLRHGETALTPQKRFSGSGGTDPELSPAGRRQAEAAAVSLAARGTIQAVVSSPLRRCRETAEAVAARLGLEVRLEEGLRETDFGAWEGLTFAEVRERFPDDLDAWLGSAAVAPTGGGESFEAVARRVAAARDKLLARYTGRTVLVVTHVTPIKTLVRLALGAPPESLFRMELSAASLSAVAYYADGNASLRLLNDTSHLR
>NZ_CP019779.1|WP_084776134.1|2770127_2770976_-|hypothetical-protein
MGTAHARLPYGHRPLDRPRGVHPPLHPDAHHRSPTLNAAPADQIRLLDVQALDVRLTQLEHRRNNLPELAELQTLEADLTQQRDLLVAAQTEESDTSREQTKAEQDVDQVRQRAARDQKRLDSGAVTSPKDLENLQHEIVSLAKRQGDLEDVVLEVMERRESAQERVAELTARVEAIQAKVNDAVARRDAATSEIDAEVATATKERELTVGDIPADLLKLYDRIRSKEGGVGAARLYQRRCEGCRLELNITEVNDVRAAAPDAVVRCENCGRILVRTPDSGL
>NZ_CP019779.1|WP_084771063.1|2770867_2771743_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MPVLSEVLTALDALWPPERAEGWDAVGTVCGDPDAEVRRVLFAVDPVQEIVDEAVQLGADLLVTHHPLYLRGTTTVAASTFKGKVVHTLIKHDIALHVAHTNADTADPGVSDALAGALDLRILGPLVPDPSDPEGRRGLGRICELPHPMTLAEFASYAAARLPATAQGIRAAGDPEREIRTVAVSGGSGDSLFDDVRAAGADAFLTADLRHHPASEATQHTGGSPLALLDAAHWATEWPWCEQAAAQLDAVSDRHGWGLRTHVSRTVTDPWTAHAASTPLFTPTHTTGAPR
>NZ_CP019779.1|WP_084771064.1|2772019_2773288_+|hypothetical-protein
MTMSATEDAAAPGGPHRTALTIAADGSYAARLARHDDAAGSRFPERWTLSGPEPYAVPLPGGQPEEPDSELLPLTDGRVLILRRVADRFTLSLLYPTDPGTGELLLGTVAVPELTLLPPAPDGGLGYALAPGEQRTGLWLVHGGADGPERIAEVPGRCTGGAWLDRDGRLLALDRELDGRTKTVVVDLERGGETGPLLQITEESNDRLLLADPDSGLLLVRSDAPGHDRLGWGVLGSSLPVRFPDCLRPAGLPSGAPVTPTPFAVQPGQVLAPESCAVAFRMDAAHATWLGVWRPSGRGLRQLPAPAGWLAGAGLWTADGALLLPYATDAEPCGVARMAIPLEPVAPVARRKPAGTAGRPVGGRSRAGAPYGGGIVPAPGESDNRSTPSAHPKAAATEPRRVPAHPRLCRPVPLQQAPLAAR
>NZ_CP019779.1|WP_164993269.1|2773451_2773619_+|hypothetical-protein
MSEARTDTTQARPQEASAQAAEAARSGRHRGPAAAEESDSTAHGRHRRDKQPQGA
>NZ_CP019779.1|WP_084771065.1|2773734_2774676_-|3-oxoacyl-ACP-reductase
MAQPLEGLTAIVTGAGRGLGRAEALELARLGARVVVNDYGRSGRDGSGDASAAPAEGVAEEIRAAGGEAVAHLGDVADHEQARALVQLAVTTYGRLDILVNNAGILRDRMVFSMTEDEWDAVIRVHLKGHFNTTHFAAAHWRERAKAAGGPVHGRIVNTSSEAFLAGSAGQPNYAAAKGGIVGLTTSTALALAKYGVTANAICPRARTRMTEDVFAGFAEPQDGTLDPLAPEHVAPLVGYLASPAAAGVNGQLLVVHGGMVAVAERPRIAAKFDTAKDVFSFEELDALLTPYYAQRPPNETFAAAEVLGLKHD
>NZ_CP019779.1|WP_084771066.1|2774742_2775819_-|Zn-dependent-alcohol-dehydrogenase
MRAAVQHETGQDKLEVLDDVEAVGFGPGKVRIRIRATGLCHSDLSAMNGVLPQPAPFVPGHEGAGEVLDVGDGVTGLSSGDRVLMCWLPACGGCPACKRGQTHLCLAGFLNAGTPNFKRPGGDVFGFAGTGTFAEEVVVAANCAVPIPDDVPYEIAALIGCGVTTGLGAALNTARVEAASSVAVIGCGGVGISTIQGARACGAARIVAVDPVPARREAALRFGATEAVAPEELADAKARITAGEGFDYVFEVVGKSATARTAYEATRRGGTLCVVGAGAMDDTFRVNMFELFFDEKRILPSLYGGGDVLRSYERAIALWRAGRIDLEGLITHRVRLAEINDALDQMRSGTALRTCIEI
>NZ_CP019779.1|WP_084771067.1|2775909_2776785_-|MaoC-family-dehydratase-N-terminal-domain-containing-protein
MPIDAVKATSAEPRTTELAWDHKDVQLYHLGIGAGAATPEKPHPATDPDELRYTLESALHVLPSFATVAGGGMALAGGLSAPGIDVDLAAVLHGGQTVTVHRALPVRGRATQTSTVPAVHDKGKAAVIVLRSEVADEDGPLWTCDTQIFVRGEGGFGGERGPSVRLELPDRAPDLSTERHIRADQALLYRLSGDWNPLHADPEFARLAGFDRPILHGLCTYGVTLKAVVDTVLGGEVARVRSYATRFAGVVFPGETLRLRLWREPGRIQVSVTAPERDDAPVLADTVVEHS

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Crispr_ID: NZ_CP019779_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_4

2922164-2922267

Orphan

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019779_4

>merge|NZ_CP019779|4|2922164-2922267|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGACCGAGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGA

>NZ_CP019779|4|4|2922164-2922267|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGA	CCGAGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084771162.1\|2928771_2930037_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP019779.1\|WP_084771150.1\|2912434_2913058_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|376526
NZ_CP019779.1\|WP_084771163.1\|2931608_2932487_-\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP019779.1\|WP_084776148.1\|2933630_2934155_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|377602
NZ_CP019779.1\|WP_084771152.1\|2915177_2916179_+\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|153418
NZ_CP019779.1\|WP_084771151.1\|2913326_2915006_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_CP019779.1\|WP_084771161.1\|2927763_2928762_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|235918
NZ_CP019779.1\|WP_084771157.1\|2921102_2921684_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP019779.1\|WP_033268757.1\|2932585_2933578_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_CP019779.1\|WP_084771153.1\|2916277_2916907_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_033268672.1\|2917097_2918129_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP019779.1\|WP_107487371.1\|2920148_2921024_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP019779.1\|WP_033268666.1\|2922485_2922785_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771156.1\|2919473_2919836_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380395
NZ_CP019779.1\|WP_107487372.1\|2930298_2931612_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_CP019779.1\|WP_084771154.1\|2918198_2918795_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP019779.1\|WP_173675860.1\|2924391_2925363_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP019779.1\|WP_084771155.1\|2918806_2919199_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NZ_CP019779.1\|WP_084771158.1\|2922865_2924353_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP019779.1\|WP_084771160.1\|2925776_2927693_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084771162.1\|2928771_2930037_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	7.4139e-71
NZ_CP019779.1\|WP_084771150.1\|2912434_2913058_+\|DsbA-family-protein	gnl\|CDD\|376526	pfam01323, DSBA, DSBA-like thioredoxin domain. This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyze one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognized. Some members have been annotated as dioxygenases, dehydrogenases, or putative glycerol-3-phosphate transfer proteins, but are most likely HCCA isomerase enzymes.	3.13615e-12
NZ_CP019779.1\|WP_084771163.1\|2931608_2932487_-\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	1.43777e-26
NZ_CP019779.1\|WP_084776148.1\|2933630_2934155_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	4.90354e-20
NZ_CP019779.1\|WP_084771152.1\|2915177_2916179_+\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	6.47789e-17
NZ_CP019779.1\|WP_084771151.1\|2913326_2915006_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	2.34206e-85
NZ_CP019779.1\|WP_084771161.1\|2927763_2928762_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl\|CDD\|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	9.29351e-158
NZ_CP019779.1\|WP_084771157.1\|2921102_2921684_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.43684e-09
NZ_CP019779.1\|WP_033268757.1\|2932585_2933578_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	9.17638e-155
NZ_CP019779.1\|WP_033268672.1\|2917097_2918129_+\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	2.00881e-125
NZ_CP019779.1\|WP_107487371.1\|2920148_2921024_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.29996e-20
NZ_CP019779.1\|WP_084771156.1\|2919473_2919836_-\|cupin-domain-containing-protein	gnl\|CDD\|380395	cd06990, cupin_DUF861, domain of unknown function DUF 861, cupin domain. This family contains proteins which seem to be specific to bacteria and some fungi. The function of this family is unknown but contains a cupin domain without a metal binding site. Cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin (cupa is the Latin term for small barrel).	2.93751e-58
NZ_CP019779.1\|WP_107487372.1\|2930298_2931612_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP019779.1\|WP_084771154.1\|2918198_2918795_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.18177e-57
NZ_CP019779.1\|WP_173675860.1\|2924391_2925363_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	7.56661e-162
NZ_CP019779.1\|WP_084771155.1\|2918806_2919199_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.96777e-34
NZ_CP019779.1\|WP_084771158.1\|2922865_2924353_+\|sugar-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	6.23272e-117
NZ_CP019779.1\|WP_084771160.1\|2925776_2927693_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0

>NZ_CP019779.1|WP_084771157.1|2921102_2921684_+|GNAT-family-N-acetyltransferase
MQLLSFPEAATPPGLRAQVRELHDEAWPPSDPPADHDSDAGHDPALHPRSMLLVDDGTVLAALDILSKPLVHAGRHYRAGGLSTVVTRQAARGRGHGRRLVAAAREAMSRSGLDLGVFTCDRPLRSFYESAGWQLLPGTVLLGGTPTAPFPSDRPGFDKVTMADFFSATARKSRTAFRHTRLELYPGEIDKLW
>NZ_CP019779.1|WP_107487371.1|2920148_2921024_+|glycosyltransferase
MPHLRVGVAVLTMGNRPAELHALLDSVAKQDLQPVHVVVVGNGSPLPSLPHGAHGVELSENLGVSGGRNVALDELRKLGDVDVVVDLDDDGLLISPDVLRRVTELHEREPELGVISFRIADELGRTQRRHVPRLRVGDPRRGGPVTTFLGGGHSLSMAMLDRIGDWPEDFFYAHEETDLAWRALDDGWRIRYEPDLVLQHPYTSPTRHAVYHRMVARNRVWLAKRHLPAVLVPLYLGVWAVLTAVRSRSVAGLRAWAAGFAEGVRTPCGRRRPIRWRTVWRMTRLGRPPII
>NZ_CP019779.1|WP_084771156.1|2919473_2919836_-|cupin-domain-containing-protein
MMEVKTIDKPDERRDFPRGHLEALHLTGLDFAVATFEPGWRWSESVGPIAGTDSCEVHHNGFVVQGRMRIRMDDGAESEVGPGDVFVCPPGHDAWVVGDEQVVVYDFAGGMAVGYAKAKE
>NZ_CP019779.1|WP_084771155.1|2918806_2919199_-|thioredoxin
MSTVELTKENFDDIVSGNDFVLIDFWAEWCGPCKQFGPVFERSSEKHDDLVFAKVDTEAQPELAQAFQIQSIPTVMIVRDNIAVFAQPGALPAEALEDVIGQARALDMEEVRASVTEAQQDEQAQSGQGQ
>NZ_CP019779.1|WP_084771154.1|2918198_2918795_-|histidine-phosphatase-family-protein
MSELLLVRHGETEWSRNGRHTSWTDLPLTANGEEQARALRPLLSDRKIGQVCASPRARALRTAELAGLPEPEIDPDLREWDYGGYEGIATAEIHRERPDWYLFSHGVPPGPEGHPGESPDEVGARADRVLARLAPYLDADDGDVVLVGHAHFSRVLAARRLGLPASAGGLFTFETGAVCVLGTEHDRPAVVAWNARSL
>NZ_CP019779.1|WP_033268672.1|2917097_2918129_+|rod-shape-determining-protein
MTISLAQLRRCSAAVDLGAARTRVYVKNQGLVVDEPTVAAVNTRTGALLAVGAQAEVMDGRTPDYIRVVRPVSGGTVVDIDMAQRLLRTLVGDKLRKTWRRRPTMRAAVCLPYGSEPLAQRAAVETLTGLGARRVELVDTLVAAAIGSGLPVEQPEATMIVVCGAGTTQVAVLSLGSIVAAETVQVGGNAIDHAVIQHLRLHHELMLAGQAVRPLQLILSGGDGRTPGSTEVHGRDVVSGMARSVHVDTERVLDAITTPLTAILDGIGAVLRRCPPDLVADLGERGIMLAGGSALIPGLEPMIHQATTMPVHTADRPDTCAVMGLGAMIEGKVQPLHLDPMAP
>NZ_CP019779.1|WP_084771153.1|2916277_2916907_+|hypothetical-protein
MNPTADNDPPTDAGAPTGPGARADLPGPVAFQCVLLRRMADHHPDRVEDALRALGVTRAQMREANRRWQATMHTPRGRGVQPYRALLGAPESRTTRRIGDLTCTVLTWPVPLWPDLRFEVLTDERRGTVWNAWLVRAPGAAAPELRTAPDLAPWCCTVDEVARAFAPARPLEGSAPTRWRLACTAPGPDGTPEKLVAEFTWGLYQRRVD
>NZ_CP019779.1|WP_084771152.1|2915177_2916179_+|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MEQSAPPPYRRIVEEIRRRIDAGELAPGDRVPSTRRITREWGVAMATATKVLTTLRQEGVVRAVPGVGTVVSDPQAGHPEQPQTRARKPARGAPASERAPREPDGGGGLNRDRIVSAAVRVADAEGLRGLSMRRVAAEFGMSSMALYRHVANKDELVLLMADAAFADVTLPDPAPDGWRERMEAGARLQWELYQRHPWLAQYLSLTRPQPMPRAMALVEWTMARVEGMDPVTLIHMALTLLGFVLSTAAGLEDDLEAEQETGMDQEQWMAAMDPVFEGILTSGSYPMYAGMAGTDDNKVNLGTLFDFGLERLLDGMEVLVERRAGGDATVRTP
>NZ_CP019779.1|WP_084771151.1|2913326_2915006_-|MFS-transporter
MPFTSYTSRPYASQPSAGRREWIALAVLLLPCLLVSMDVSVLYFAVPFLTAQLEPSSVQQLWILDVYGFVLAGLLITMGALGDRVGRRKLLLSGALLFGLASGLAAYSGSAEMLIAARALLGVGGATLMPSTLALIRNLFHDAKQRGKAVAIWSAAMMGGIAIGPVLSGALLEHFWWGSVFLINAPAMVLLLVCGPLLLPEFKNPAAGRFDLPGSLLSLLAMLPLVYGIKEIARDGVSALPVVALAAGLLAAAAFVHRQRTARHPMLDLELFRHRGFSVSVLMNLLSMFAVVGCAVFFTQYLQTVRGMSPLEAALWNLLPTLAVGGMTAVATSLAQRMDRAYVIALGFAIAAAGFVWLSWLEPGSALWYVLVASSVYASGLVMVMSLGNELAIGVAPPERAGSASALLESGTELGGALGMAILGSIGSAVYRGRMDDAVSAGLPSGAADAARETLAGAAAVAGELPGRAGEALLAAARTAFTDGLQTAVLVAAGVMALAAALAIALLRGLRTTEGEGPKGAGAGDAGDVAEAADAAGVTGAGAAGVGGAADVAGAGTGI
>NZ_CP019779.1|WP_084771150.1|2912434_2913058_+|DsbA-family-protein
MTNPSSTRHSVDFYFDPICPFAWISSRWILEVEQLRDLDLRFRVMSLSVLNEGREDLPQKYRELLDAGWGPVRVCIAAAQEHGEGVLRDLYTALGTRIHNDGREDTATVIEEALAEVGLPAELAEAADSEAYDDALRKSHHEGMDPVGEEVGTPTIHIDGVAFFGPVLMAIPRGEDAVRVFDGARLLAGYDKFFELKRSRTGEFDFS
>NZ_CP019779.1|WP_033268666.1|2922485_2922785_+|hypothetical-protein
MRYRLTFMAGLATGYVLGSRAGRERYEQIRKAAQRVTRNPAVRNSAESVALTGRDAASKAFGKVSAKVEGHLPASVGSRVRSLREQRASTEDEWGTSNT
>NZ_CP019779.1|WP_084771158.1|2922865_2924353_+|sugar-kinase
MGIVAGLDSSSDSTRIVVCDADTGAVIRQGYAPHPVEKGPEADPQAWLMSLGEAAGGGLLEGVQAIGVSAQQHGLLVLDADGALVRPALLGNDRRAQSAAADLVDSLGGRTAWAQAVGAVPQAAHPVTKLRWLARTEPENAARVTEVMQPHDWLVWQLLGRPARRTTDRGAASGTGFWSAASASYRPDLVELALGHQVRLPEVLGPSGTAGFTPEGLLISAGTGETMAAAFGLGVGEGDAVVSLGASGSVFGIHHEALVDPSGTITSFADATGRHLPVVHTSNAVRVLRGAAEMLGTDLQGLSDLALKSSPGAYGMVLLPYLEGERTPHLPHTAGSLHGMRRESMKPEHMARAAVEGMLCGLADALDVLRGRGVAVRRVFLLGAAAELGAVQAAAPGLFGVQVVVPQPADYAALGAARQAAWAWGVAHGTLAPAAGAEAGPGGGSVWVDPPQWPAAASQVFEPGEELPVGQAVRQQYATVRDEIHPGAWADRREG
>NZ_CP019779.1|WP_173675860.1|2924391_2925363_-|RNA-polymerase-sigma-factor
MPQEPAAAPDPGPAPRAETGSPSSDLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLTNTPDLSSRLAYDLDQLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDEVAAHLGLTGERVTEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD
>NZ_CP019779.1|WP_084771160.1|2925776_2927693_-|DNA-primase
MAGRINDDDVKAVRDAVPIDAVVSEYLQLRNAGGGNLKGLCPFHDEKSPSFHVSPAKGLYHCFGCQEGGDTVDFVMKIDHLSFAETIERLASQAGITLRYEEGGYSPGRQQGERTRLVEAHKAAAQFYAEQLDSPEAEIARAFLAERGFDQAAAQHFGVGYSPAGWDHLTRFLRGRRFTDQELVLSGLSQEGRRGPIDRFRGRLMWPIRDIAGEVVGFGARKLRDDDNGPKYLNTPETPLYRKSQVLYGIDLAKKEIARTNRAVVVEGYTDVMACHLAGITTAIATCGTSFGEGHIKILRRLLMDNSGSEVVFTFDGDAAGQKAALRAFEDDQKFAAETSIAITPGGMDPCDLRLAKGDQAVADLVESRTPLFEFALRHVVSRHNLDTTVGRAAALDEAAPIVAHIKNSSIQHESAVQLAGMLGILDTQFVVKRVAQLARWARERGRDGRPDQNRGPQRRPASAPEQARPAPGPRGPALNLRSPAHRVERELLKLALQRPDLVSPAFDAYGADEFTAPPYAVVRQCIEDAGGATAGASDDGYVARVREAAPDDTVRAMVTELTVEPLHTRRDPDEAYAGVQLVTVRLAAVNQRVTEIRGTLQRLGPRADPEHLAAVQNELWVLQQYGQSLRERGYAAL
>NZ_CP019779.1|WP_084771161.1|2927763_2928762_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MTQRTGPAHPGGDAPDLVTFDDVRDAARRLAGVAHRTPVLRSRTLDAAVGAEVHLKCENFQRVGAFKFRGAYNALSRLSPEQLARGVAAYSSGNHAQAVALAARELGSHAVIVMPEDAPRSKTDATAGYGAEIVRYDRYTADRAALAQQLAEERGLALIPPYEHPHIIAGQGTAALELLEETGRLDALLAPIGGGGLMAGSATAATALAPDIRMIGVEPAAGDDTRRSLAAGHPVTIPVPRTIADGQAVDTPGALTFAVNRRLLDSVVLVSDDEIRAAMRFAFERLKIVTEPSGASALAALLAGRVSPLPARIGVIISGGNIGPDRFTELLG
>NZ_CP019779.1|WP_084771162.1|2928771_2930037_-|FAD-dependent-oxidoreductase
MVDAHQTFVIVGGGLAGAKAAETLRSEGFTGRVILICDERDHPYERPPLSKGYLLGKEERDSVFVHEPAWYARAHIELHLGQPAVHLDPDAKTVRLGDGTLIAYDKLLLATGAEPRRLDIPGTGLAGVHHLRRLAHAERLRGVLASLGRENGQLVIAGAGWIGLEVAAAARSYGAEVTVVEAAPTPLHGILGPELGGLFTDLHREHGVRFHFGARFTEIVGQDGMVLAVRTDDGEEHPAHDVLAAIGAAPRTALAEQAGLDLVDRAAGGGIAVDAALRTSDPYIYAAGDVAAADHPLLDTRLRVEHWANALNGGPAAARAMLGQDVSYDRIPYFFSDQYDVGMEYSGYAPPGSYAQVVCRGDVAKREFIAFWLADDGRLLAGMNVNVWDVAENIQQLIRANHPLDPIKLADPEVPLTALLP
>NZ_CP019779.1|WP_107487372.1|2930298_2931612_-|deoxyguanosinetriphosphate-triphosphohydrolase
MTGTSPTIPGYTPADTERWVPEPDKRPGRTAFQRDRARVLHSAALRRLAGKTQVVTPGAHTHVWDATPRTRLTHSLECAQVGRELGAALGCDPDLVETACLAHDLGHPPFGHNGEQALNEVAAPCGGFEGNAQSLRLLARLEPKRFVSAPGGTVLSVGLNLSRAALDAATKYPWPRGGHPTDPGSRKFGVYEDDLPVFGWFRQGTPDGAQSFEAQVMDWSDDVAYSVHDVEDGLHAGHLDPNVLLADPERAEIFAVAAERYAPGAGDAELAAALDRLLEQEWWPHGYDGSALAQARLKDATSQLIGRFCLAAEAATRVRWGSGRLTRYGAELVVPAETRLECAVLKAVADRYVMQRPDQEALRADQRIVIAELAEALLARAPDGLDPQFRSLFDAAPDDTARMRAVIDQIAALTDLSARSLHARLTRRPGNAEANPG
>NZ_CP019779.1|WP_084771163.1|2931608_2932487_-|sirohydrochlorin-chelatase
MTEPTPHPSAPSSAPLGAGDLAAEITAQLSTRLRTVRLRGFHRPGPAAPTLVAVAHGSRDPRALPTVRALLDRVRALRPGLPVRLGHLELNRPLLADTLAELAGRAVLVPLLFGHGHHVTHDLPAALAAAPHLTGRIAEPLGPHPLLAEALHGRLLEAGATAGRDWTAVVLAAAGSRAARSARDTERTAALLSARLGGLPVVSAYASAATPSVPDAVRELTARGHERIAVAGCFTAPGRFATQCAQAAPGAAAAPLGDHPALARLVLHRYDQALLTRTGSGPESTRAATVAV
>NZ_CP019779.1|WP_033268757.1|2932585_2933578_-|adenosine-deaminase
MPKAELHLHIEGTLEPGLAFALAERNGVTLPYATEDELRRAYSFSDLQSFLDLYYALMAVLRTEDDFADLAHAYLARAEEQGVRHAEIFFDPQAHTARGVPVGTVIGGLARALDSAEETYGISTRLIMCFLRDETAESALATFEAARPYLDRITAVGLDSAEVGHPPSKFEAVFRLAKEAGLKCVAHAGEEGPPAYVWEALDVLGVDRIDHGVRSMEDERLVARLAAEQVPLTVCPLSNVRLRVIDDLADHPLPAMLEAGLLVTLNSDDPAYFGGYVDDNFTAVRDALGLDPATLRTLARNSFRASFLDEAVREKYLKEVDAHEAGAHRE
>NZ_CP019779.1|WP_084776148.1|2933630_2934155_-|gamma-glutamylcyclotransferase
MTPEPERLPFFVYGTLCPGGTNHAWALRGRTAREEPARITGALLYDGPGYPYAVAGPPEAVVHGALVLPREADYDEVRATLDRLEGYAPGDPANLYERVATEAVRTDGSTEPAWVYLAAEPLAGRLRSTGTPVEGGAWRGAAAAGGHAPANLDDSSRTDGPSCPEGPSRTAEQV

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Crispr_ID: NZ_CP019779_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_5

3719737-3719899

Orphan

Consensus_repeat	Method
GGCCGGACCACCTCCGTCACCGACGCCCTCGGCGAGACCACCCAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019779_5

>merge|NZ_CP019779|5|3719737-3719899|PILER-CR
CCTCCGTCACCGACGCCCTCGGCAACACCACCCACCTCTACTGCAACAAGGCGGGCCTGCCCCTCTCCGTCACCGACCCCCTCGGCGCGGTCACCCACTACCGCCGCGACGCCTTCGGCCGGACCACCTCCGTCACCGACGCCCTCGGCGAGACCACCCACAT

>NZ_CP019779|5|1|3719737-3719899|PILER-CR
CCTCCGTCACCGACGCCCTCGGCAACACCACCCACCTCTACTGCAACAAG	GCGGGCCTGCCCCTCTCC
GTCACCGACCCCCTCGGCGCGGTCACCCACTACCGCCGCGACGCCTTCGG	CCGGACCACCTCCGTCA
CCGACGCCCTCGGCGAGACCACCCACAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084771621.1\|3730277_3731156_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP019779.1\|WP_107487394.1\|3727300_3727642_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771612.1\|3725818_3726556_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP019779.1\|WP_084771594.1\|3706419_3708417_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
NZ_CP019779.1\|WP_084771605.1\|3715115_3715835_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP019779.1\|WP_084776197.1\|3727638_3727836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771619.1\|3729381_3730281_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|235110
NZ_CP019779.1\|WP_084771608.1\|3716698_3717325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_077192647.1\|3710700_3711705_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP019779.1\|WP_084771599.1\|3709504_3710701_-\|galactokinase	unknown	unknown	gnl\|CDD\|223231
NZ_CP019779.1\|WP_084771602.1\|3713032_3714703_+\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271372
NZ_CP019779.1\|WP_084771607.1\|3716273_3716696_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP019779.1\|WP_084771596.1\|3708444_3709221_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP019779.1\|WP_084771611.1\|3725358_3725724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771588.1\|3705562_3706357_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP019779.1\|WP_084771614.1\|3726595_3727159_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|223340
NZ_CP019779.1\|WP_077192654.1\|3728095_3728950_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP019779.1\|WP_084771617.1\|3728930_3729227_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP019779.1\|WP_084771604.1\|3714735_3715047_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771610.1\|3723397_3725197_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084771621.1\|3730277_3731156_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	8.22167e-129
NZ_CP019779.1\|WP_084771612.1\|3725818_3726556_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	7.07607e-12
NZ_CP019779.1\|WP_084771594.1\|3706419_3708417_+\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	0
NZ_CP019779.1\|WP_084771605.1\|3715115_3715835_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.75797e-32
NZ_CP019779.1\|WP_084771619.1\|3729381_3730281_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|235110	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	2.39727e-145
NZ_CP019779.1\|WP_077192647.1\|3710700_3711705_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.38063e-173
NZ_CP019779.1\|WP_084771599.1\|3709504_3710701_-\|galactokinase	gnl\|CDD\|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	3.73254e-127
NZ_CP019779.1\|WP_084771602.1\|3713032_3714703_+\|sodium:solute-symporter-family-protein	gnl\|CDD\|271372	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP019779.1\|WP_084771607.1\|3716273_3716696_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00389221
NZ_CP019779.1\|WP_084771596.1\|3708444_3709221_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.68677e-40
NZ_CP019779.1\|WP_084771588.1\|3705562_3706357_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.0041e-74
NZ_CP019779.1\|WP_084771614.1\|3726595_3727159_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.76095e-22
NZ_CP019779.1\|WP_077192654.1\|3728095_3728950_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.87711e-06
NZ_CP019779.1\|WP_084771617.1\|3728930_3729227_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	3.87165e-24
NZ_CP019779.1\|WP_084771610.1\|3723397_3725197_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.06498e-165

>NZ_CP019779.1|WP_084771608.1|3716698_3717325_+|hypothetical-protein
MGLVGGNGYQLEPEAFEQLTKGIKAATAELKELGFDVEAQLGRGFDRLSLDSMECGDDGLAAALDSFCDRWGWGVRSLMQDANEFSKKLGLTAGLYYEQEQYVSDALKQTVNAAMGDPSLTPEKLHKMSWSKIGGDNPFTQIANPDFDPNSRASREAHGHMLEAGQDLAADVESIPDRMKHPFDGDRAEVTTEFHEPKGSQGQGGSSK
>NZ_CP019779.1|WP_084771607.1|3716273_3716696_+|SseB-family-protein
MSLADEIAAVHAGQPDPAALVGEFRRTHVLIPTADDTLLSTELDGIRWLYAFTDEEALARFALSRGSEPGTEWRYVTASGARVLDVLIPAIEGPTGVALNAGSEQGALFPPVAGIVPDRVAMDVAMTDIPDADASLRGKA
>NZ_CP019779.1|WP_084771605.1|3715115_3715835_-|response-regulator-transcription-factor
MGVRLMVVDDHRLLAEALASALKLRGHRVLAAAAPSAGAAELVVSRAPEVCLLGTAQPAQPGAFDPVVRIKKERPQVAVVVLGPVPSPRGIAAAFAAGASGYVRNDERIEGVERAMMKARAGESAVSPQLLQQAFEELLHPAAQPDDEGARLLELLTPREVEVLMRVADGEDTRLIAAGMDIAPSTARTHVQRVLMKLEVGSRLEAAALAARTGLLDRAGGGRAGRTTAAGPEDPAPPR
>NZ_CP019779.1|WP_084771604.1|3714735_3715047_+|hypothetical-protein
MSDHQHEVEELERESATATRLFDVRLIIGGLFVVYGVIVTLAGLTAGDADLKKAQDININLWTGLGMLALGLFFLVWLKLRPAVPPTAAELAAAAAENEPAKG
>NZ_CP019779.1|WP_084771602.1|3713032_3714703_+|sodium:solute-symporter-family-protein
MITLAEGLRLPTNGLDYTILALYFIVVLGIGFAAKRSVRTSLDFFLSGRSLPAWVTGLAFVAANLGATEILGMAANGAQYGAYTVHWYWIGAIPAMVFLGLVMMPFYYGSKVRSVPEFLLHRFGPSSHLLSSIIFAVSSVLIAGVNLYAMAIVLQALLGWPQWVAIVVAGFFVLAYITIGGLTSAIYNEVLQFFVILAALIPLTVVGLKRVGGWDGLTHSLNSSHGDAFLTAWKGTGIGEGNPLGANWLTIVLGLGFVMSFGYWTTNFAEVQRALSAKNLSAAKRTPLIAAFPKIFIPMVVVVPGLIALVMEPTLGKSKDGLQYNDAIPVLMRDLLPNGVLGIAVTGLLAAFMAGMAANVSSFNTVFTNDIWAAYLKKGREDAYYLKTGRVVTAVGVLIGMGTAFIASSFSNIMNYLQTLFSFFNVPLFVVFIIGMFWKRTSAAAGFWGLLSGTAAAMVNYFWFYKQGIIAIPSDQGANFVSSIVAFVVGALVMVVVTLVTKPRPAESLAGLVYGTRSPGMEELPAEGDDAWYRKPALLGWSAVVLAAVCYIPFSF
>NZ_CP019779.1|WP_077192647.1|3710700_3711705_-|UDP-glucose-4-epimerase-GalE
MSKPESGKYLVTGGAGYVGSVVAQHLLEAGHAVTVLDNLSTGFRAGVPAGAEFIEGDIRDAARWLDSTYDAVLHFAAFSQVGESVVKPEKYWDNNVGGTMELLAAMRTAGVRKLVFSSTAATYGEPVSTPITETDPTAPTSPYGASKLAVDHMITGEAAAHGLAAVSLRYFNVAGAYGSCGERHDPESHLIPLVLQVAQGKREAISVYGDDYPTPDGTCVRDYIHVADLAEAHLLALAAATAGEHLICNLGNGNGFSVREVIETVRKVTGHPIPEVAAPRRGGDPAVLVASAQTAIDRLGWRPSRADLAGIVADAWQFTQNLDRAPHHNQPKGP
>NZ_CP019779.1|WP_084771599.1|3709504_3710701_-|galactokinase
MTAHGAATPTTERPHGAQHTAERFAAVYGTAPQGIWAAPGRVNLIGEHTDYNDGFVMPLALPHTTLAAAAPRTDGVLRLHSGGADGGIVELRLDELRPAPGAGWAAYPAGIVWAMWEAGLPVGGADLHYDSTVPTGAGLSSSAALEVATALALNDLYGLGLERQRLAQLAQRAENAFVGVPCGIMDQTAAACCTEGHALFLDTRDLTRRQVPFDLAAEGLRLLVVDTRVQHELGDGAYAERRAGCESGARALGVRALRDVAAPQLPEALATLADRPVVQALVRHIVTENDRVEQVVACLDAGRTRAIGPLLTAGHASLRDDFKISCRELDLAVDTANAAGALGARMTGGGFGGSAIVLVEETAARTVGTAVTEAFAAAGHAVPRIFEAVPSAGAHRLD
>NZ_CP019779.1|WP_084771596.1|3708444_3709221_-|response-regulator-transcription-factor
MQRIRVLVVDDHRIFAESLAAALAAEQDVDVAAAGSAPAALRSLDRAATDGRRFDVLLADADLAAPLLAVPAQAPGPVREAVPRPCPRDGIALVSGLRTSHPYLRTVVLADRDDPRRAAAALQAGASGWVAKDCSLSRLLAVIRGVLRDETHLPPALLTGVLRELTAARKHRSESERLVESLTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHSTLAAVALARRAGVGPVELEAAAAAASVPVP
>NZ_CP019779.1|WP_084771594.1|3706419_3708417_+|beta-galactosidase
MGIHFGGDYNPEQWPEEVWAEDLKLMKAAHVTMVTAGIFSWAKVEPRPGQWDFGWFDRVMDGLAGAGIAVCLATMTASPPPWLSRAHPEILPEGPDGQRRWPGGRQHYCPSSPVYRAHAVRLVEQLATRYAGHPALAMWHVGNEFGCHTRQCFCDVSAEDFRHWLRVRYGSVEALNAAWSTAFWSQGYGAFDEVLPPRTAPTFPNPAQQLDYLRFSDEALRACYLAEKEVLTRLTPEVPVTTNLMPQHKPVDAFAWAPHMDAMALDFYQDPHAPDDHIRAGYVFDLMRSARSGQPWLLLEQAPSAVNWRPRNGPKPPGAMRLWSWQAVAQGADAVLYFQWRQSLGGAEKFHSAMLPHGGTDTRIFREVAALGRELASVPDIEGSRSRAEVALLADWHSWWAVELDSKPSTALDHSRIALDHYRPLFEAGVACDVVPPQRELSGYRLVVVPNLYLLTEADAERLAAFVRGGGRLLVSFFSGIVDAHDRVHPGGYPAPLRELLGLRVEEFWPLDAGRTVGIGNGTYAGRADLWSEAIDLEGAEVLARFTDGDLAGRPALTRHAYGQGTAWYVGTRPEPALMRALLDDVREAAGVAPVLPGLPAGVQATVREGASGRYVFLLNHGASAVDVDLPEPLYDALAAADGPARTPVGRVTLAARGVAVLTDG
>NZ_CP019779.1|WP_084771588.1|3705562_3706357_+|SDR-family-oxidoreductase
MSQQRAPHPANGPYGRRFEGRTVLVTGAAAGIGAATADRLAAEGAGVLLLDIDDERGEHLARRIRAAGGRASYEHCDVAGEDDWRRAVEAARRRYGPVDGLVSNAFLPYVAAAGETPLADWDRQLAVNLTGSFLGVRATLDDLRARHGAVVLTSSVHALMGLPGRPAYAAAKAGLTGLGRQLAVEYGPEVRVNSVLPGPVLTAAWDGIGEEQRQASAAETAARRLGRPEEIAAAITFLLSSDASYVTGASLVVDGGWSVYKNSS
>NZ_CP019779.1|WP_084771610.1|3723397_3725197_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MAVNLVNLEAVGKVYGTRALLDGVSLGVNEGDRIGVVGRNGDGKTTLIRILAKLESADDGRVTHSGGLRLGVLTQHDSLDPAATIRHEVIGDLADHEWAGNAKIRDVLTGLFGDLHMPGFDKGLDTVIGPLSGGERRRIALAKLLIAEQDLIVLDEPTNHLDVEGISWLARHLQARRSALVVVTHDRWFLDQVCTRMWDVQRGDVHEYEGGYSDYVFARAERERIAATEETKRQNMMRKELAWLRRGAPARTSKPRFRIEAANELIADVPPPRDSAELMKFASSRLGKTVFDLEDVSVQAGPKVLLKHLTWQLGPGDRIGLVGVNGAGKTSLLRALAEAARTQGEVQPAGGRIVVGKTVKLAYLSQEVAELDPTWRVLEAVQRVRERVDLGKGREMTAGQLCEKFGFTKEKQWTPVGDLSGGERRRLQILRLLMDEPNVLFLDEPTNDLDIETLTQLEDVLDGWPGSLIVISHDRYFIERTTDRVQALLGDATLRMLPRGLDEYLERRQKVIEAATPSPAPQATAPKKAAAVNRAAQKELQKIERQLDKLGDKETKLHAQIAENATDFEKVAGLDAQLRELTAEKDELEMRWLELAEDA
>NZ_CP019779.1|WP_084771611.1|3725358_3725724_+|hypothetical-protein
MNNDQAPAVLPPVDGPRHGVGAALGRIVLGLLLLAGAGLTAVIVPLFVMASDNCFEGDARPICSTGGQQTVAFLPVAAAVTAAVLTVVGMGSRRTAGVVCLLAAPCVLALAWLVSLGIAGA
>NZ_CP019779.1|WP_084771612.1|3725818_3726556_+|alpha/beta-hydrolase
MTSDTGTTVETVRGLVYGPGGKRLDVYRPAAAPPAGTVLLWHGIGPDERDILEPLARTAAARGLLVLVPDWGSDAADRGRSQLLESLAFVRAGAAGLGGDGESLVLAGWSAGAGAALGVALRPEVAGGWRPAAVVGVAGRYDLPAITTGEAPLADLADGLDPAVPVRLVHGSRDTVVSPDHSRELAEALRAAGRPVTLQEPDTDHAGVIMTAYDPASDRCLPTTAEHAVRAGQLVAEVLATVAGS
>NZ_CP019779.1|WP_084771614.1|3726595_3727159_-|dihydrofolate-reductase-family-protein
MRSVTYSMSVSLDGYIVGPDGGFDWTVPDEDVFRFWIDEIRGVGVHLMGRRLYETMLYWETADQDPSLDAAMLEWAALWKPLPKVVFSTTLSEVQGHARLASGGPAEEIERLRAEPGDGEIAIGGATLAAEAAAAGLIDEYRAMVHPVLVGGGTPFFPRHERRVDLELVETRTFSSRVVYLHHRVVR
>NZ_CP019779.1|WP_107487394.1|3727300_3727642_-|hypothetical-protein
MNRTTELVRRLLEPLLSRLVPGRGGHRAPSSTGALSATAWSPAAPARRRLVRAHRVPPGLLPLCGAGGHVVRPYANTAGGGRRPPVDQVARRRELEESVRRLNTWSSGGGGRR
>NZ_CP019779.1|WP_084776197.1|3727638_3727836_-|hypothetical-protein
MHDDVHDSAAELRTALQDHGITLPSLGVDLPGFAGAYGVPLVALGNCNAATARRLADALRKAAPR
>NZ_CP019779.1|WP_077192654.1|3728095_3728950_+|helix-turn-helix-transcriptional-regulator
MARRKDIDGSAGVPTFYGKELRYQRELAGLTLQQLVEGSFYGPSHLSEIERGERRMPAELAEHVDRVLKTDGFFQRRCEDVRKARRTGHAAYFERVLEAEKYAETIEEWCPTLLPGLLQTPAYARTVVRATHPLAPDEEVDDKVAARVARARLFETDHKAPLYWATLSEALLRQSILAPEDMAEQLERIGALAKRRRIVPQILPWNCGPHPFMIGTAMIMTFPDAPPLVYTEALHTGDTIDDPALVKEYRKSYDWLRAAALPPEASLAMIEEAAEDYRNGKQTN
>NZ_CP019779.1|WP_084771617.1|3728930_3729227_+|DUF397-domain-containing-protein
MASRRIDLTTALWRRSSYSNGSGGNCVEVAEGFPGAAQWRKSSYTSGDGGNCVEVVDGLPGVVPVRDSKDPHGPALVFPAAAWSSFVTAVKDAGLPGA
>NZ_CP019779.1|WP_084771619.1|3729381_3730281_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTESVTVRVPAKVNVQLAVGAARPDGFHDLANVFLAVGLYDEVTATSADTLRITAEGHDIDRIPLDRTNLAARAAELLAARHGIEPRVHLHITKDIPVAGGMAGGSADAAGALLACDALWSTGASRDELLDICAELGSDVPFSLVGGAALGRGRGELLTPLTVGGAFHWVFAVADGGLSTPAVYREFDRLTAGTDVPAPEADPRLPAALESGDATALAAVLANDLQPAALSLRPTLTATLEAGTAAGALAALVSGSGPTTAFLVKDAEAAREVAAALLASGTCRQVRVADSPAEGARVL
>NZ_CP019779.1|WP_084771621.1|3730277_3731156_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MSNSSTDDSGPLLGPADIRELAGALGVRPTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEIGPGLGSLTLGLLEAADRVIAVEIDDVLAAALPSTVAARLPGRADRFALVHSDAMHVTELPGPEPTALVANLPYNVAVPVLLHMLATFPSIDRTLVMVQSEVADRLAARPGNKVYGVPSVKANWYAEVKRAGAIGRNVFWPAPNVDSGLVSLVRRDKPVETSATRAEVFAVVDAAFAQRRKTLRAALAGWAGSAAAAEAALVAAGISPQARGEALTVEEFARIAEMREAGK

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Crispr_ID: NZ_CP019779_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_6

3887049-3887176

Orphan

Consensus_repeat	Method
TGGACAACCACCAGCCCATCATCGGGGCCGGTGTCACGCCGCAGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019779_6

>merge|NZ_CP019779|6|3887049-3887176|CRISPRCasFinder
TGGACAACCACCAGCCCATCATCGGGGCCGGTGTCACGCCGCAGGTGCAGAAGCCGGGCGACCGGGATGTCGTCAGGCCCATGGACAACCACCAGCCCATCATCGGGGCCGGTGCCACGCCGCAGGTG

>NZ_CP019779|6|5|3887049-3887176|CRISPRCasFinder
TGGACAACCACCAGCCCATCATCGGGGCCGGTGTCACGCCGCAGGTG	CAGAAGCCGGGCGACCGGGATGTCGTCAGGCCCA
TGGACAACCACCAGCCCATCATCGGGGCCGGTGCCACGCCGCAGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084771753.1\|3890342_3891935_-\|fatty-acid--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|236072
NZ_CP019779.1\|WP_084771747.1\|3882353_3883586_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
NZ_CP019779.1\|WP_033269632.1\|3894514_3895072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771757.1\|3895267_3896296_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP019779.1\|WP_107487550.1\|3893230_3893737_+\|OB-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP019779.1\|WP_084771754.1\|3892042_3893194_+\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181147
NZ_CP019779.1\|WP_084771746.1\|3879897_3880260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771750.1\|3887553_3887775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084771748.1\|3883845_3886779_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276938
NZ_CP019779.1\|WP_084771751.1\|3887970_3889524_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|171961
NZ_CP019779.1\|WP_084776211.1\|3881625_3882267_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP019779.1\|WP_084771756.1\|3893733_3894495_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP019779.1\|WP_084771758.1\|3896314_3898918_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|270916
NZ_CP019779.1\|WP_084771752.1\|3889660_3890254_+\|TIGR03086-family-protein	unknown	unknown	gnl\|CDD\|274424
NZ_CP019779.1\|WP_084771744.1\|3874738_3876478_-\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
NZ_CP019779.1\|WP_084771745.1\|3877814_3878612_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP019779.1\|WP_033269621.1\|3876566_3877691_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
NZ_CP019779.1\|WP_173675741.1\|3878798_3879836_-\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274680
NZ_CP019779.1\|WP_084771743.1\|3873214_3874672_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143408
NZ_CP019779.1\|WP_084771742.1\|3871343_3872915_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_033269621.1\|3876566_3877691_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	2.13793e-40
NZ_CP019779.1\|WP_084771753.1\|3890342_3891935_-\|fatty-acid--CoA-ligase-family-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP019779.1\|WP_084771747.1\|3882353_3883586_-\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	5.08455e-30
NZ_CP019779.1\|WP_084771757.1\|3895267_3896296_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	4.85748e-11
NZ_CP019779.1\|WP_107487550.1\|3893230_3893737_+\|OB-fold-domain-containing-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	2.2834e-16
NZ_CP019779.1\|WP_084771754.1\|3892042_3893194_+\|lipid-transfer-protein	gnl\|CDD\|181147	PRK07855, PRK07855, lipid-transfer protein; Provisional.	0
NZ_CP019779.1\|WP_084771743.1\|3873214_3874672_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143408	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.	0
NZ_CP019779.1\|WP_084771748.1\|3883845_3886779_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	5.49989e-39
NZ_CP019779.1\|WP_084776211.1\|3881625_3882267_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	4.96478e-24
NZ_CP019779.1\|WP_084771756.1\|3893733_3894495_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	1.95306e-38
NZ_CP019779.1\|WP_084771758.1\|3896314_3898918_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.25878e-71
NZ_CP019779.1\|WP_084771744.1\|3874738_3876478_-\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	1.43155e-93
NZ_CP019779.1\|WP_084771745.1\|3877814_3878612_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.50245e-75
NZ_CP019779.1\|WP_084771751.1\|3887970_3889524_+\|AMP-binding-protein	gnl\|CDD\|171961	PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.	2.81789e-108
NZ_CP019779.1\|WP_173675741.1\|3878798_3879836_-\|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274680	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity].	3.0255e-64
NZ_CP019779.1\|WP_084771752.1\|3889660_3890254_+\|TIGR03086-family-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	1.08146e-37
NZ_CP019779.1\|WP_084771742.1\|3871343_3872915_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.84422e-26

>NZ_CP019779.1|WP_084771748.1|3883845_3886779_+|tetratricopeptide-repeat-protein
MDDGPGRERLRFTVLGPVRAWRGATPLAAGSPQQRALLAALLLRGGRTATAPELVDALWGDEPPHAALAALRTYASRLRKALGADAEALVSESGGYAIRPVDGHPLDLDHDHAEQYAAEAEKAKASGDRARARELLDAALDLWDGEPLAGLAGPYAETQRTRLEEWRLSLTETRLELVLEAGCHADAVSELTALTAAHPLRERLRELLMLALYRSGRQAEALAVYADTRRLLADELGVDPCASLSELQQRILQADPDLDAPDVSFDTDPAGPAVVRPQQLPATVADFTGRASFVSELGDQLATAEGSVMAVSALTGIGGVGKTTLAVHVAHAARDHFPDGQLYVDLQGAGDNPSEPVAVLGAFLRALGTPDASIPDGLAERSALYRSTLAGRRVLALLDNARDASQVRPLLPGMEGCAALVTSRARMIDLAGAHLIDLDVMSPEEALALFTRIVGEERVTSERQAAMAVVGACGFLPLAIRIAASRLAARRTWTVSILASKLADERRRLDELRAGDLAVKATFELGYKQLEPAQARAFRLLGLADGPDISLAAAAAVLDMDVDDTEELLESLVDTSLLESAAPGRYRYHDLVRLYARACAERDEHPPSERDAAMSRLLDFYLASAARMYALERPGDRLIVHMEATSYPGLAFADRAAALEWLFNEAGCLLACARQSSDAATLRRAADLLLLTKDLAESGADALQYEQANVALLTAAREAADQHAEARFHLALTYVRTLSGRLDEADENAKSAMLLGLASEDPYVAASAPNDRGIIANAQHRHADAEGYLRQALTAFRDDNNRQSEASALCNLSRVHLDTGRVDSAIELAEEGLAIYRQLGAKRRLANGMYALALAYTQAMRLDEATGQLTAALAIFRDSRQRFWEGMTNFRLAEVELAARRPATAANHAEQALTALRGIGGDSWRATVLTTLGRALHALGQTGRARVCWQEALATFERLGSSEGNAVQALLTPTAVA
>NZ_CP019779.1|WP_084771747.1|3882353_3883586_-|amidohydrolase
METFPKIISVDDHTVEPPNVWRDRLPSKYHDIGPRVVRAPLKEMTFVGGKFAPKMGAPGDDGPIADWWIYEDLHRPLTRLDTAVGCSRDEIKLEGITYEQMRPGSYSVPERLADMDVNHVQSALCFPTFPRFCGQTFTEAKDRELGLLGVRAYNDWMVEEWCGPQARGRLIPLTLIPLWDPELAAAEVRRNAARGVRAVCFSEIPPHLGLPSIHTDHWDPFLRACDETGTVIAMHIGSSSRMPSTSADAPPAVGSTITFANCCFSMVDWLMSGAFDRFPRLKIMYAEGQIGWIPYILERADVVWEENRAWGGVADKVLRPPSELFADHVFGCFFDDAFGLRNLDAIGPGNVLYETDYPHSDSTWPKSREVGESQMAHLPPATVERIVRGNAIDLLGLTDEGLWGPSAARD
>NZ_CP019779.1|WP_084776211.1|3881625_3882267_-|HAD-family-hydrolase
MIRAVAFDVGETLIRDDRGWGAWADWLGVNRHTLSALVGAVVAQGRDNADALRLVRPGIDIAAERAAQEKAGRAEYLDETDLYPDVRPALTALRSAGLRVVIAGNQTARAAELLRALQLPADAVATSGEWGIAKPHPRFFAGVVELAGAEPDEVLYVGDHPQNDVTPARTAGLRTAHLRRGPLGHLWAESEDARSADWQLGSLTDLVDVLRVK
>NZ_CP019779.1|WP_084771746.1|3879897_3880260_-|hypothetical-protein
MNDRDISSDVEQETVDRNLIQQTIERAQGLRRTAADADELVRTVEALRGHIALLMPDAEEATNRLWRGSIEWSRRTGRLSGVRFQAGQVPGPGRLSVHVQLGQLARDCQWLLDDYKERRK
>NZ_CP019779.1|WP_173675741.1|3878798_3879836_-|TIGR03619-family-F420-dependent-LLM-class-oxidoreductase
MSRGSRYDTSSVTARRARVDGTGGTDGAGGGVWRPDGGRLVYGMQLPVQSQSVLFAEGWEAAAGVADLVAVARAADRYGFAYVGCCEHIAIPRRLAEAMSTVWYDPVATLAYLAAATERVRLLSHVAVVGLRHPLISAKQYATLDHLSGGRLILGVGAGHVPEEFAALGVGFEGRGAVLDETVDALKAALGSEEFPAFAGKRFAFEGLGQAPRPAQTPRPPIWVGGSSAAAVRRAAERGDGWLPQGDRREALPGQIARLRAMREAAGVREPAVIGAIAEPVYVGEPGWEVGRRALTGPPERIAASLREYGAMGVTQIQVRFRSRSRAELTDQMAAFGTDVAPCLN
>NZ_CP019779.1|WP_084771745.1|3877814_3878612_-|SDR-family-oxidoreductase
MGKLDGRVVLITGAARGQGEREARLFAGEGARVVLADVLDAQGEALAEEMAEEAGEGRAVYVHLDVGREEDWAAAVTSAKDAFGKIDGLVNNAGILRFNELTSTPLAEFQQIVQVNQVGAFLGIKTVAPEIEAAGGGTIVNTASYTGVTGMAYVGAYTATKHAIVGLTRVAALELAAKGIRVNAVCPGAIDTAMSNPAQLDPEADTEAAAQALDELYRKLVPLGRAGRPEEVAALALFLSCEDSSYITGQPFVIDGGWLAGVSVL
>NZ_CP019779.1|WP_033269621.1|3876566_3877691_-|LLM-class-flavin-dependent-oxidoreductase
MEFGLFVQGYVGKRAETDPLAEHKALMEETEYVIQADTSGFKYAWASEHHFLEEYSHLSANDVFLGYLAHATERIHLGSGIFNPLAQVNHPVKVAEKVAMLDHLSEGRFEFGSGRGAGSHEILGFLPGITDMNHTKEIWEETIAEFPKMWLQEEYVGFQGKHWQLPPRKIFPKPYGASHPAMWYAAGSPSSYAMAARKGLGVLGFSVQKVSDMEWVLEQYKTAIRDAEPVGDFVNDNVMVTSTAICAETHEKAVEIAVNGGLNYLQSLVFRYHDTFPRPDGIPEWPELLPDYTTEIIELLIAEELMICGDPDEVLRQCKRWDQAGADQLSFGLPIGIPYEDTMNTIKLIGEHVIPKIDTDPVHRTTRFRQTAGS
>NZ_CP019779.1|WP_084771744.1|3874738_3876478_-|D-aminoacylase
MLDHLIKGATVVDGTGAPAYAADVGIRDGRIAVIAAPGTVTEESATSEDARGRILAPGFVDPHTHYDAQLFWDPYATPSLNHGVTTVAGGNCGFTLAPLHPDRPEDADYTRRMMSRVEGMSLVALEEGAPWSWHSFGEYLDALDGRIAVNAGFMVGHCALRRYVMGPDAVGGQPTEQQMAQMLALFHEAMDAGAWGLSTTQSGTHSDGDGQPVASRHATPAELLALSRAVAEHEGTQIEAIVAGCLDQFSDDEIELFVEMSAAAGRPLNWNVLTIDAAVPERVPRQLVASERARKAGGRIVALTMPILTPMNMSLGTFCALNLIPGWGEILGLPVDERIARLRDPAVRTEMLRRATSKEAGVFRRLADFGRYVIGDTYSAANDGLTGRIVKDIAAERGQEPFACLVDICANDRLRTVLWPMPTDNDPASWALRAETWQHEDVLLGGSDAGAHLDRMCGAPYTTRFLGDCLRGRRLVGLEQAVKMLTDDPAQLFGLRERGRVQEGYHADLVLFDPETVDAGQATLVHDLPGESPRLDSKAIGVHAVWVNGVETLRDDEVTGAVPGTVLRSGRDTRTVSTR
>NZ_CP019779.1|WP_084771743.1|3873214_3874672_-|aldehyde-dehydrogenase-family-protein
MAEGRLFVGGEWVAPAGGHYEVIDPATETVVGLAPEATRAQVHEAAAAARAAFAAWSGTAPEERAAILDRAADVLQRDFAAHAELAQAESGATTGTARALQVAVAVARFRRYAKGALEPVEQGLPPQVNEAGPMGRAGVIGALAARRPVGVVTCITSYNNPWANPAGKVAPALAMGNTVVVKPAPQDPLSVYRMAAALEEAGVPPGVVNVVSGASADAGAAAVDAPDVDMVSFTGSTAVGQRIGEVCGRAMKRQLMELGGKGAAVVFDDADLDAAVAGIGTTFSFYSGQICTAPTRVLAQRGVYDALIDRLARYAGHLKVGDPRAPGTVVGPVISAAHRDRVASYVELGRKEGARLVTGGEHPRGPERGFYVAPALLADCTPDMRVVREEIFGPVVVVVPFEEEDEAVALANDSDYGLIDYVWSGDVARAFRVARQLRAGGVGVNTVGRNMEAPFGGFKKSGVGRDVGSYALHAYSELQAIVWQG
>NZ_CP019779.1|WP_084771742.1|3871343_3872915_-|APC-family-permease
MVQVDPRPQAGDTVTSVAATGSADGTRGKGLSGNSVGLLGSAVIGISTVAPVYCLTSTLGPTVGEVGVQMPAVFLAGFLPMLLVAFAYRELNKAVPDCGTSFTWTVKAFGPRVGWMCGWGLVIATIIVLSNLAGVATSFFYLLLGELTGSQAIADLDGNRAAHVLTCLAFIAVATAISYRGMTATKGVQYTLVGLQLAVLAVFVVMAVAKAQSGDLAGSLHFSWTWLDPFAVQSFSAFTAGLSLSIFMFWGWDTCLTVNEETTGSAKTPGRAALLAMLVLIGSYLLTAVASQMFSGVGHKGTGLGNPDTADNVFAALANPVMGTVLGVLLFVAVLASAAASLQTTFIPVARTVLAMSTYKALPASFAKIHPRFRSPGRATIAAGVATGVFYAVMSLLSENVLIDTIYALGLMICFYYSITAFACAWFFRRELRNSVRDLLFKGVFPFAGGLLLAAVFGKTLTDMWNPAYGSGSSVFGIGSVFVIGVGLLLLGVVIMLIMRRRSPAFFRGEVLTRATPALVVEE
>NZ_CP019779.1|WP_084771750.1|3887553_3887775_+|hypothetical-protein
MTRTAKGLVVTAAAVAALGTAALPAVADSHSPTPPHSAMTLDNHAPVPPADKHTPLTALDKHMPLTPLDNHIP
>NZ_CP019779.1|WP_084771751.1|3887970_3889524_+|AMP-binding-protein
MFEAARVQTLWELVEYRARASRGAPMFFDADGRSVTFDGVRDEALRVAAGLRELGIGAGSRVAWQLPSRIGTVLVSLALARLGAVQIPVIPLHREREVGFVLAESAAEFVLVPGVWRGFDHTAMARKVAADGVRVVPVEDGLPRADPAGVPAVAPAEGTTWIYYTSGTTAAPKGVEHTDATLLAGGVGLATALGMSARDIGSIAFPYAHIAGPDYVIAMLVSGFPAVILDSFEPGRATDVYRRRGVTMAGGSTAFYQAFLDESRRRRAGRPGAGRLIPSLRLLSGGGAPLPPELCTAARRELGCAIVHGYGMTECPMIAMGTPYDSDEQLARTVGKPVVGAEIRIVRPDGSPAATGECGEVTLKGPMLFRRYTDPALTAAAFDAEGYFHTGDLGLLRPDGHLVLTGRLKDIIIRKGENISAQEIEDLIHTHPAVAEAAVIGLPDRERGERVCAVITPADPAAPPLALDALTAHLRAAGLMTQKLPEQLESVGELPRGGPLNKVLKSVLRERYARGAR
>NZ_CP019779.1|WP_084771752.1|3889660_3890254_+|TIGR03086-family-protein
MTEMIDFTAQTRLVARLAERTADAQLDAPTPCGTYAVRHLLGHLVGLSAAFQDVARKELGPTTSTSPNAFRPDVEPGWRAELDRNLAGMVTAWRAPEAWEGETQAGGVPLPGAVAGRIALNELVLHGWDLARATGQDYAPDEDSLAVSYALLSSWSAPDGTSGGLFGTPVPVPEDAPLLDRVVGLGGRRPDWTPSAA
>NZ_CP019779.1|WP_084771753.1|3890342_3891935_-|fatty-acid--CoA-ligase-family-protein
MHGDEDPRADLEYGTLPRLVRAAARRYGSREAVVEGRTRVSYAELGERVERAAAACMAGGVQPGDRVAVWAPNTLDWIVSALGAVTAGAVLVPVNTRFKGAEAAHVLDRTRAKLLFVTGTFLGTSYVASLRRAAPGLPHLEQVVVLSDSAPEGYRTWKDFLAGGEGITGEEVRRRADAVAPTAPSDIIFTSGTTGRPKGAVITHAQTLRCYGVWSELAGLREGDRYLIVNPFFHTFGYKAGIVACLLRGAVMVPQPVSSVETALANIAAERISVLPGPPTLHRSLLDHPARSAHDLSALRLVVTGAAVVPLQLVERLHAELGVRTVLTAYGLSEASGIVTMCRRGDAPEVIASTSGRAIPDTEVRVLAEPGEPGEVLVRGHHVMGGYFEDPEETAQVLDADGWLHTGDVGVLDAAGNLRITDRIKDMFIVGGFNAYPAEIEQLLCHHPDIAEAAVIGIPDPRLGEVGRAYAVRRAGSSLTADDLIAWSRREMANYKVPREVAFVTELPRNAGGKVLKTHLRKGLPGPARA
>NZ_CP019779.1|WP_084771754.1|3892042_3893194_+|lipid-transfer-protein
MGATLKDATAIAGIGQTPFAKHLPESEKALACRAIVAALDDAGIAPSEVDAFASYTMEETDEVEIAKAIGAGDVTHFSKVGYGGGGSCATVAHLAAAVATGQASVGVAWRSRKRGSGPRPWKNTRVQLPTPGQWTRPFGLLRPADEIGLLARRYMHEYGATRDHLFNVALACRNRANQNPAAIMYERPLTREMYMTARWISEPLCLFDNCLETDGALACVVVSAERARDCRQRPVYVHSAAQGLPAQHHGMVNYWNDDPLTGPAWTAARHLWKGADLGPQDVDVAQIYDAFTPLIPLSLEGYGFCGRGEGAAFTEGGALEIGGRLPLNTGGGGLSEAYVHGFNLITEGVKQLRGTSTAQVPDAATCLVTAGEGVPTSALLLRS
>NZ_CP019779.1|WP_107487550.1|3893230_3893737_+|OB-fold-domain-containing-protein
MTPSVPESLSASVPGPTDNAPGDDTGLLLPVPDEDGAPFWDHAARGELRVQSCSDCDELRFPPRPCCPHCQSFATHWRRMSGRGRIWSYVLPHPPLLPAYAALPGYNAIVVELAEAPRIRLVGNLVAAPDAPLNSVDPARLRIGAPVKAVFTVLPGGVTVPRWILERP
>NZ_CP019779.1|WP_084771756.1|3893733_3894495_+|enoyl-CoA-hydratase/isomerase-family-protein
MTVRTRIADGVALVTLDRPERHNAIDLDTAAELAATWRAFRFDDSVRAAVVTGAGGRAFCTGLDRSADVPQPPSPYSLDDPLLSIGPKANDLWKPVIAAVDGMACGGAFYLLGEAEFIIASENSTFFDPHTTYGMVSAYESVLMAQRMPLGEIARLSLMGTAERLGARRAYRIGLVSELTAPGAAAEVALRRAATVAAQPTSAVQGTVRALWAAKEAARTQALAHAPQLIALGNLPPEAQAELFAARKRDGSG
>NZ_CP019779.1|WP_033269632.1|3894514_3895072_-|hypothetical-protein
MKHHARTGTGARGGTRKGIRVAVAAGLTLATVATVGGCAFARPRVVVPPSYYPTPTSTSTGYSTDYPTPSYEPTYSPSPTQETYDPDGRADVSGSNCDFSNSLRQFTYTVSITNPSSTDTYSYDMAVNWMKAKPADGKAYGLHERSITVGPGATETYTAKYTVNQSSIGQFWYTCQITRAHKTRM
>NZ_CP019779.1|WP_084771757.1|3895267_3896296_+|hypothetical-protein
MVRNVLGSLIALIGATAAVWSPFRPWYDGRHGRDVRIEDLFNGITPNSAALFGSLLLPLAFAALVALIGVALCSRALVALAGLVVLGFTILWMVRQGQAASELTAGARGLGVGVANALGGGALLLLGALIMRGRTRRVRDPEYDRGYDRRYDDARYDERQYDDHGYGRYAPDDRYDERRPPPPAAYPPAAYPPATPEPWDAGRPGAEEWDPEPYAPGPAGPQTGARPAPYGEQGDSTPTAPLPVTPPPPQEGQQRPQPLQAPTPQPQQERPRAPEPPPTRTSRRPPPTPPVEWGREQRRTGPPASPPSPQQQQQQQQQQQAQQEPETPPQPQQPQRAPEERE
>NZ_CP019779.1|WP_084771758.1|3896314_3898918_-|PQQ-binding-like-beta-propeller-repeat-protein
MVEQLKALTQHDPRRIGPFEVLGRLGAGGMGLVYLARSASGRRVAIKTVRTELAEDQLFRVRFTREVEAARAVSGFYTAAVVDADPRAAVPWLATAYVPAPSLEEIVNECGPLPAQAVRWLAAGIAEALQSIHGAGLVHRDLKPSNVLVVEDGPRVIDFGIASGVSNTRLTMTNVAVGTPAYMSPEQARDSRSVTGASDVFSLGSTLVFAATGHAPFHGANPVETVFMLLREGPDLAGLPDELRPLMESCMQMEAGHRPSPADLQSQLAPHLFGSGSDDSGTASAWLPPGAVGLIESRRGGRTAVPRDGAQRAAAGRGAGRPPAPPAVPPMPAPQPVQAPPRPENAPAGEGSGWPGRIGPGAHRGDPRGGHPGPMPQPASLGPDAGAPRATPVSAAPPAVAPDRAAVLSAPSADGAAGPVHLGGSAAPIGPGPRADVRDPQPRGQAAATNWVRPPAGAPTAGVPQQGAAAPLPEAAPAPPAAPPEPPPAEPGRWRPWRFRMSNDVWGTPVVADDLLYVTSFEVHALDVASGRRKFKTRDVAWAMAVADGRIHASDGPSLYALDAEDGTERWRLNTDGWVYALKADRGTVVTSTRGGGVQAWEAATGELLWETVGAQTDFETAEAGPAVHDGTVFVWADARLKALEARTGAERWSYPVGDAAACGGVPMRLLPASDGVVYVVAGTRVLAIDIARGDVRWHFEAPAVFLSPPAFAPGPAVTGGGLYLADYLGTVYALDTADGRDRWRIATEARQSTEPVLVAHGAVHLGSGKALYTLDAVTGTPRWRFQAGAEVVGAPVVAEGRVHFGSADHCLYTLDAMGGQLRWKLATGGEITGSPVAVGGVVYACSKDRCVYALDAAKGTGQARRA

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Crispr_ID: NZ_CP019779_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019779_7

5359057-5359183

Orphan

Consensus_repeat	Method
GCCTGCTGGGGGTAGCCGTAACCGGGCTGGCCGCCCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP019779_7

>merge|NZ_CP019779|7|5359057-5359183|PILER-CR
GCCTGCTGCGGGTAGCCGTAACCGGGCTGGCCGCCCTGCGGCGGGACGCCCTGCTGGGGGTAGCCGTACGGCTGCTGGGGGGCCTGCGGGGCCTGCTGGGGGTACCCGTAGCCGGGCTGGCCGCCCT

>NZ_CP019779|7|2|5359057-5359183|PILER-CR
GCCTGCTGCGGGTAGCCGTAACCGGGCTGGCCGCCCT	GCGGCGGGACG
CCCTGCTGGGGGTAGCCGTACGGCTGCTGGGGGGCCT	GCGGGGCCTGCTGGGGGTACCC
GTAGCCGGGCTGGCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019779.1\|WP_084773184.1\|5361750_5362593_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP019779.1\|WP_173675776.1\|5366325_5366535_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084773182.1\|5360999_5361431_-\|peptidase-inhibitor-family-I36-protein	unknown	unknown	gnl\|CDD\|377188
NZ_CP019779.1\|WP_033271682.1\|5359548_5360403_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637
NZ_CP019779.1\|WP_084773161.1\|5346183_5347515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222843
NZ_CP019779.1\|WP_084773180.1\|5360495_5360924_+\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602
NZ_CP019779.1\|WP_084773193.1\|5369329_5370871_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|235000
NZ_CP019779.1\|WP_084773158.1\|5343877_5345068_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|283431
NZ_CP019779.1\|WP_084776334.1\|5362649_5363441_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|371292
NZ_CP019779.1\|WP_084773186.1\|5363766_5364861_+\|DUF2690-domain-containing-protein	unknown	unknown	gnl\|CDD\|371292
NZ_CP019779.1\|WP_084773165.1\|5350364_5351462_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274357
NZ_CP019779.1\|WP_148666670.1\|5345202_5346090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084773163.1\|5348042_5349221_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP019779.1\|WP_084773173.1\|5356174_5357740_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP019779.1\|WP_084773175.1\|5357818_5358400_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197891
NZ_CP019779.1\|WP_033271518.1\|5349244_5350129_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP019779.1\|WP_084773171.1\|5355542_5356178_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP019779.1\|WP_084773190.1\|5366639_5367443_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_158541823.1\|5352389_5352812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019779.1\|WP_084773191.1\|5367706_5369215_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143437

Protein	Function_ID	Function_description	E-value
NZ_CP019779.1\|WP_084773184.1\|5361750_5362593_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	5.82661e-16
NZ_CP019779.1\|WP_084773182.1\|5360999_5361431_-\|peptidase-inhibitor-family-I36-protein	gnl\|CDD\|377188	pfam03995, Inhibitor_I36, Peptidase inhibitor family I36. This domain is currently only found in a small set of S. coelicolor secreted proteins. There are four conserved cysteines that probably form two disulphide bonds. Proteins 2SCK31.15C and SCO3675 also have probable beta-propellers at their C-termini. This family includes Streptomyces nigrescens SmpI, a known peptidase inhibitor of known structure. This protein has a crystallin like fold pfam00030 and is distantly related by sequence. It is not known whether other members of this family are peptidase inhibitors.	1.34248e-10
NZ_CP019779.1\|WP_033271682.1\|5359548_5360403_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	0
NZ_CP019779.1\|WP_084773161.1\|5346183_5347515_+\|hypothetical-protein	gnl\|CDD\|222843	PHA02030, PHA02030, hypothetical protein.	1.80606e-05
NZ_CP019779.1\|WP_084773180.1\|5360495_5360924_+\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	4.98542e-17
NZ_CP019779.1\|WP_084773193.1\|5369329_5370871_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	1.963e-127
NZ_CP019779.1\|WP_084773158.1\|5343877_5345068_+\|VWA-domain-containing-protein	gnl\|CDD\|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	1.5478e-49
NZ_CP019779.1\|WP_084773186.1\|5363766_5364861_+\|DUF2690-domain-containing-protein	gnl\|CDD\|371292	pfam10901, DUF2690, Protein of unknown function (DUF2690). This bacterial family of proteins has no known function.	2.16419e-14
NZ_CP019779.1\|WP_084773165.1\|5350364_5351462_-\|hypothetical-protein	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.14407e-08
NZ_CP019779.1\|WP_084773163.1\|5348042_5349221_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP019779.1\|WP_084773173.1\|5356174_5357740_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP019779.1\|WP_084773175.1\|5357818_5358400_-\|hypothetical-protein	gnl\|CDD\|197891	smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide.	0.000200124
NZ_CP019779.1\|WP_033271518.1\|5349244_5350129_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP019779.1\|WP_084773171.1\|5355542_5356178_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	5.27302e-110
NZ_CP019779.1\|WP_084776334.1\|5362649_5363441_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|371292	pfam10901, DUF2690, Protein of unknown function (DUF2690). This bacterial family of proteins has no known function.	4.60266e-14
NZ_CP019779.1\|WP_084773191.1\|5367706_5369215_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143437	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.	0

>NZ_CP019779.1|WP_084773175.1|5357818_5358400_-|hypothetical-protein
MSYPNQNNPYGPPPGQQPGYGYPQQGVPPQPPQPSPYGPYPGGGPMPGMQPQYPMVMPGGVKAARIMLYVLAGLNLIGLVLAVVGLGGVSRASHDSSPYADSEDLVAMNIGKGLLIAAIVVIVIFTAAAITLAAQFANGGGGVRVGTIIFGVTTTMLSLFSFPLGLVHTILGILVLVFVSKDDGNAWFSRPRY
>NZ_CP019779.1|WP_084773173.1|5356174_5357740_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTVTEGTQRPIRRALVSVYDKSGLEELAQGLHAAGVQLVSTGSTAAKIAAAGVPVTKVEELTGFPECLDGRVKTLHPKVHAGILADLRLEDHRRQLADLGVEPFDLVIVNLYPFRETVASGATPDECVEQIDIGGPSMVRAAAKNHPSVAVVVNPARYGDVLKAVSDGGFALAERKRLAAEAFQHTAAYDVAVASWFADDYAAVDESGFPDFLGATYTRKNVLRYGENPHQGAALYVSGEGGLAEAEQLHGKEMSYNNYTDTDAARRAAYDHDEPCVAIIKHANPCGIAIGAEVAEAHRKAHACDSLSAFGGVIAVNRPVSVAMAEQVAEIFTEVIVAPGYEDGAVEVLSRKKNIRVLRCPDAPSNPVEVKPVDGGALLQETDRLQAEGDDPANWTLATGAALSAEELAELAFAWRACRAVKSNAILLAKDGATVGVGMGQVNRVDSAKLAVQRAGEDRARGSYAASDAFFPFPDGFEVLAEAGVKAVVQPGGSVRDELVVEAAEKAGVTMYFTGTRHFFH
>NZ_CP019779.1|WP_084773171.1|5355542_5356178_+|phosphoribosylglycinamide-formyltransferase
MPPAGPGRPARVVVLVSGSGTNLQALLDAIAGQGAAAYGAEIVAVGADRDGIVGLERAERAGLPTFVCRVKDHASRADWDRALTAATASYEPDLVVSAGFMKILGKEFLARFGDRIVNTHPALLPSFPGAHGVRDALAYGAKVTGCTVHFVDDGVDTGPIIAQSVVEVRDEDDESALHERIKEVERSLLVEVVGRLARHGYRIEGRKVRIP
>NZ_CP019779.1|WP_158541823.1|5352389_5352812_-|hypothetical-protein
MQTEREQGEQRTGDEQGEQGHSGGLQCGGGARAAEPGAYPVRQLRRGSPEPGGEQGGAGRPEDVPGRRGEGGEGRTRYVQQDAERVGVQVARGGVEQHAGRNQQIAGEQGAEEGAGSRLGRGGGVGGPRAETTPQAGVTA
>NZ_CP019779.1|WP_084773165.1|5350364_5351462_-|hypothetical-protein
MTQREQNPAATAFDDLYSRHAAGLTRQAYLLTGRPELARRAVARGFRLAWQRWPQVAVDPDPAGWVRAAVYEYALTPWQRLLPGLRTARTAQELPPSVGPADRALLTAVLGLPAPYRRMLVLHDGVGLGLHEAATEVEASTPAAAGRLAHARELVVAELTRGEPSRAELTRGEPSRAELTRGETRGEEGGVGPAEDEVGGPDVGGRDVGGRDVGGRELNGAVLDGGVLDGGAGASGPGEVVRVRLAALAASLEVAPSAAPQGAAAQAATPAAATPAAAMPSAVTPSAATPPAAASLLRAESERSACRLTRVTFALTGLFALVTLSVAVVVPDRGAPPWQRPLVTAPAASDAPVQPREARLLPEAR
>NZ_CP019779.1|WP_033271518.1|5349244_5350129_+|succinate--CoA-ligase-subunit-alpha
MAIFLTKESKVIVQGMTGATGMKHTKLMLGDGTNIVGGVNPRKAGTSVDFDGTDVPVFGSVKEAMEKTGADVSVLFVPPAFAKAAVVEAIDAEIPLAVVITEGIAVHDSAAFWAYAKSKGNKTRIIGPNCPGLITPGQSNAGIIPGDITKPGRIGLVSKSGTLTYQMMYELRDIGFSSAVGIGGDPVIGTTHIDALAAFEADPDTDLIVMIGEIGGDAEERAADFIKANVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAQAKKEALEAAGVKVGKTPSETARLAREILVG
>NZ_CP019779.1|WP_084773163.1|5348042_5349221_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MDLFEYQARDLFAKHGVPVLAGEVIDTPEAAREATERLGGKSVVKAQVKVGGRGKAGGVKLAGTPDEAVARATDILGMDIKGHTVHKVMIAETAPEILEEYYVSYLLDRTNRTFLAMASVAGGMDIEEVAATTPEKLAKVPVDANEGVSIEKAREIVAQAKFPAEVAEKVAEVMVTLWKTFIAEDALLVEVNPLAKVANGDVIALDGKVSLDANAEFRQPEHEALEDKDAANPLEAAAKAKGLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGENHDNVKPANFLDIGGGASAEVMANGLEIILGDPDVKSVFVNVFGGITACDEVAKGIVQALELLKSKGEDVNKPLVVRLDGNNAELGRQILSDANHPLVQRVDTMDGAADKAAELAAAK
>NZ_CP019779.1|WP_084773161.1|5346183_5347515_+|hypothetical-protein
MRSNIRRSIVVAAAATGLWALGSVAANAAELPVSSDLPSTGTVTGATQQLPTGDVAGTATKTVKKVAGTAQKTVGGVAGKATGALGGVSTQNLPTGKLPQLGDATGAVDGAKQLLGGADLPKTGQVQKAVDPKKAKKVTKAVKKAVKVAKGAGLGKLSDGTVPSVPSLPATPGVPAANLPGGLPTLPKAPALPKAPGSADNLLAGLAGAGIRPEQLTQQAQAALATARPVVDNAAADALPPVARRIVVKVVPVAQGAAGGAGRLAGDAAAQATPFVTVVGGQAQLFVQGAAGDAVPFAQGTATDATAFAQGKAADAVPFAQGKAADAVAFGQGAAADAAPFAKGLATVVVTDGKGTATKAVAGVQSATPVPALPATPAVPSVPSVPAVPSVPAVPAVPAVPAVPAHLTDAVAVPAVPADLAELTNAANVPALPVLPALPVQGI
>NZ_CP019779.1|WP_148666670.1|5345202_5346090_+|hypothetical-protein
MSAVLALPAAVRLPRTAAARRALLAGLFLVGFVALGFAFGPGAHADDRTGSQALTGATSPARASSEASDPDRAATRDGAADGTDRLAGSGATAAQQGTATRTRLTDDAQSASRELADAVRPAAERTAPVTGRITEPVSRAVRDLGDTAGAVLPVDLPTGGAHTQRPGDGAAHPHGRTPGHAQQAGPRTGTTADGTAAARPARCTEGPHTTDAGQSRTTVHEQRDPGHQGLPGQLPQAPSAPASHTAGDGHGPRGGDHQATTPAHSLRFRLLPGGVRTADGAPTRRRAEEILEFPG
>NZ_CP019779.1|WP_084773158.1|5343877_5345068_+|VWA-domain-containing-protein
MTRTTTSRDDEAERLRRWRLALGGGAADGTGHELRGRDAAMDGALTALYGRQKGTDGQGTDRGPRTAGLGASAPAVARWLGDIRTYFPSSVVQVMQRDAIDRLGLSALLLEPEMLEAVEADVHLVGTLLSLNRVLPETTKETARAVVRKVVEQLEKKLATRTRATLGGALDRSARISRPRHRDIDWDRTIRANLKNYLPEHRTVVPERLIGHGRAAQSVKKDVVLCIDQSGSMAASVVYASVFGAVLSSMRALDTRLVVFDTAVVDLTDQLDDPVDVLFGTQLGGGTDINRALAYCQSRITRPTETVVVLISDLYEGGIRDEMLKRVAAMKASGVQFVTLLALSDEGAPAYDRDHAAALAALGAPAFACTPDLFPDVMAAALEKRPLPIPDMAEQR
>NZ_CP019779.1|WP_033271682.1|5359548_5360403_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MTAQILDGKATAAAIKSELTARVEALKAKGVQPGLGTLLVGDDPGSRWYVNGKHRDCAQVGIASIQRELPETATQEEIEAVVRELNEDPACTGYIVQLPLPKGIDANRVLELMDPAKDADGLHPMSLGRLVLGIEGPLPCTPYGIVQLLRRHDVEIKGAHVVVVGRGITIGRPMPLVLTRKSENATVTQCHTGTRDLSAHLKQADIIVAAAGVPHIIKPEDVKPGAAVLDVGVSRDEAGKIVGDVHPGVAEVAGWVAPNPGGVGPMTRAQLLVNVVEAAERAAG
>NZ_CP019779.1|WP_084773180.1|5360495_5360924_+|DUF3017-domain-containing-protein
MAAEAHSDGASEPQRSSRRFPTLTRDTARPEGGGRAASGGFPAPARQWPLLTVMGGVAVGLLLVALDAFRIGAILIGLALLAGAVLRRVLPAVGMLAVRSRFTDMLTYGVLGFVIVMLALMVQPKPWIHIPFLDDIVHFTVR
>NZ_CP019779.1|WP_084773182.1|5360999_5361431_-|peptidase-inhibitor-family-I36-protein
MNIRRNVRQRLALTAAAAAVSGGLALAPAAGAFAAPAPTHTHTQQGSVTLQRAPGNCPRGYLCVYPKPNYKGTPKKVAGNNRDLRRYGGAFNHPWSAFNNGTRCNVTVYERPNYRGGHAKLNRGTGWAYIGGNIMTIYSDKWC
>NZ_CP019779.1|WP_084773184.1|5361750_5362593_+|peptidoglycan-binding-protein
MSRWKGLPESLDQRVRQLVVQLRRLKDHSGLSLVSLAARTPYSKSSWERYLNGKKLPPREAVVALARVCDADPTRLLALHEVAAQAWGAAAAPEAGRAADPADPADPADPPDPGGGADATVAKEGAPRPAGGPRVRTGSLVVLAALGVVVVAAVALLIVRPWQQDAAGRGTAGGAAGRTAGAVPAFTHRVGETFDCRLTRTPGGLSAGRSRTTTAILGSGATGWDVVEVQCLLHHHGYDPGPVDGIVGENTQRAVKRLQAGAGLPTDGIVGPDTWKVLRR
>NZ_CP019779.1|WP_084776334.1|5362649_5363441_+|XRE-family-transcriptional-regulator
MRELRGRTGLSLAALSARTPYSKSSWERYLNGKKLPPRGAVEALCRLAGEPAGRLVALWELADAAWSRRAAPSVRPEPGAPPGPALPREPSGPAGPPARPPLSRAVAAVAAGVCVGVLAVGAALAFWAGEGRVSGSAQRAVPSSSAVTGCRGRACDGKDPQSMFCGGAGLVDTPLERTATRGQRVQVRYGTVCGAAWGRLRNGRVGDRIEVWVPGSAPRSVRVRDRFDAEGYLVTPMAAARGPRGIRLCLYPAGGAAKECFPG
>NZ_CP019779.1|WP_084773186.1|5363766_5364861_+|DUF2690-domain-containing-protein
MPRWKPLPEELDPQVREFTARLRRLVDRSGLSVSALADRTGFSKTSWERYLNGRLLPPRRAVLALAEATGTHAGHLTTLWELAERAWSRAEMRQDVTMEAIRVAQARAALGEFETPSGQAGTSARGVEVAAQRETAAAPWAASVPLQRGAREPAPGDFPGREGEVTRAAPAAAPAAEPGADGADGGDGADRRARGRRAVALAAGVVGALLVAVAAVLLLHPAAEGSRTAAAPPAPPATSGARPALPAGVRCSGADCAGKDPEAMGCGGTRATSASRGTSGGALIEVRYSTVCRAAWARISGAAPGDRATVSAGGRRVTARVRRDGAAYTAMVQVTGDPAKVSACGTTAAGANVCARPVTARAAR
>NZ_CP019779.1|WP_173675776.1|5366325_5366535_-|hypothetical-protein
MAETAAKAVLVGGPQELPERIVPVDPPGSELKIPFRNGYEHFRATSRQQHTSEGPLPVYEWWERTELPG
>NZ_CP019779.1|WP_084773190.1|5366639_5367443_-|hypothetical-protein
MTSRCRAVTATAALSCGAALLAGAACTGVVAADDSDGEGDLAGKSAQQISDDALHELVAAHSLRLRTRTSADPTALDLTLDRAGNCAGAISKGPYGRVEIIKHGAQVWMKPDAAFWKSQLPGSKGEEAAAKYRNTFLHGTTHDDFLHSLSEACDLTAFQKSAAAPDQPPSGAPSPSRTPALTKGRPTVHEGARVLPLVKKADGVVQTLYVAIDGKHYPLKLTAEVDHQTGTILLSNYGAPVPATTPAPGDTADISALEDLLQGTQRA
>NZ_CP019779.1|WP_084773191.1|5367706_5369215_+|aldehyde-dehydrogenase-family-protein
MSASETIHVDGVWQSAASGATREVLDPADASTLQVVSEGGAEDADAAVAAARRAFDGGTGAWPRTPVAARSALLRRVADLLQRDREEIALIESRDTGKTLEEGRVDVDCVTDAFRYFADLVMNESGGRVVDAGSPDIHSVVVHEPVGVCALITPWNYPLLQASWKIAPALAAGNTFVIKPSEVTPLSTVHLVKLLVEAGLPAGVANIVTGAGLPVGQRLAEHPDVDLFSFTGGLVSGTKAGAAAVSGAKKIALELGGKNPNVVFADACATDEGFDTAVDQALNAAFIHSGQVCSAGARLIIEEPVRDRFVAELARRAEKIKLGRGTEDGVECGPLVSQQQLDKVEAYVASALAEGAQLRCGGARPEPSDVRPATGYFSAPTVLDGCHREMKVVREETFGPILTVETFRTEDEAVALANDTEYGLAGAVFSADTARARRVAARLRHGTVWINDYHPYLPQAEWGGFGKSGIGRELGPTGLDEYRESKHIYENLRPEPVRWFAG
>NZ_CP019779.1|WP_084773193.1|5369329_5370871_+|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MPVYDYVVVGGGTAGSVIASRLTEDPGVTVAVIEGGPSDIDREDVLTLRKWLGLLGGELDYEYTTTEQPRGNSHILHSRAKVLGGCSSHNTLISFKPLPSDWDEWEAAGAAGWGHKEMDPYFGKLRNNIVRVAKKDQNQIASDWIEAAKTALGVPEVVGFNDKPFDEGVGFFDLSYHPENNKRSSASVAYLHPHIEAGDRPNLTLMLETWAHKLELDGTTAKGVHVRTKDGEEIYVEAAREVLVCAGAVDTPRLLMHSGIGPKKDLEALGIPVVHDLPGVGENLIDHPESVIVWETDGPIPGNSAMDSDAGLFVKRDPEHKGPDLMFHFYQIPFTDNPERLGYERPEHGVSMTPNIPKSRSRGRLYLTSADPEVKPALDFRYFEDEDDYDGRTLVDGIKLARKVAQAEPFAKWLKREVFPGPDVTDDAEISELVRKAAHTVYHPAGTCKMGAADDRLAVVDPELKIRGLAGIRIADASVFPTMPAVNPMLGVLMVGEKCADLLHKAPTQGGDA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019779_7	7.2\|5359142\|22\|NZ_CP019779\|PILER-CR	5359142-5359163	22	KY092482	Streptomyces phage Mojorita, complete genome	31670-31691	2	0.909
NZ_CP019779_7	7.2\|5359142\|22\|NZ_CP019779\|PILER-CR	5359142-5359163	22	JX182371	Streptomyces phage SV1, complete genome	30552-30573	2	0.909
NZ_CP019779_7	7.2\|5359142\|22\|NZ_CP019779\|PILER-CR	5359142-5359163	22	KY092480	Streptomyces phage Picard, complete genome	31862-31883	2	0.909

1. spacer 7.2|5359142|22|NZ_CP019779|PILER-CR matches to KY092482 (Streptomyces phage Mojorita, complete genome) position: , mismatch: 2, identity: 0.909

cggctgctggggggcctgcggg	CRISPR spacer
gggctgctggggggcctgctgg	Protospacer
 ****************** **

2. spacer 7.2|5359142|22|NZ_CP019779|PILER-CR matches to JX182371 (Streptomyces phage SV1, complete genome) position: , mismatch: 2, identity: 0.909

cggctgctggggggcctgcggg	CRISPR spacer
gggctgctggggggcctgctgg	Protospacer
 ****************** **

3. spacer 7.2|5359142|22|NZ_CP019779|PILER-CR matches to KY092480 (Streptomyces phage Picard, complete genome) position: , mismatch: 2, identity: 0.909

cggctgctggggggcctgcggg	CRISPR spacer
gggctgctggggggcctgctgg	Protospacer
 ****************** **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage