CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019706	Pantoea alhagi strain LTYR-11Z chromosome, complete genome	3 crisprs	cas3,DEDDh,csa3,WYL,DinG	1	0	4	0
NZ_CP019707	Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019706_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019706_1

710196-710281

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019706_1

>merge|NZ_CP019706|1|710196-710281|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACGGTGGCCAAATAAGCCAAGGCATAGTGAGCAACGGTTTATCCCCGCTAGCGCGGGGA

>NZ_CP019706|1|1|710196-710281|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGA	ACACGGTGGCCAAATAAGCCAAGGCATAGTGAGCAA
CGGTTTATCCCCGCTAGCGCGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019706.1\|WP_157130143.1\|703455_706053_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP019706.1\|WP_085067978.1\|711967_713392_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP019706.1\|WP_085067982.1\|719660_721016_+\|aromatic-amino-acid-transporter-AroP	unknown	unknown	gnl\|CDD\|182324
NZ_CP019706.1\|WP_085067972.1\|702881_703244_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP019706.1\|WP_085067975.1\|709035_709272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019706.1\|WP_085067979.1\|713611_715507_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP019706.1\|WP_085067983.1\|722593_723568_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226449
NZ_CP019706.1\|WP_085067971.1\|702169_702850_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP019706.1\|WP_085067974.1\|707964_708558_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|100045
NZ_CP019706.1\|WP_085067985.1\|724389_724965_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP019706.1\|WP_085067973.1\|706415_706919_-\|phenolic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|368644
NZ_CP019706.1\|WP_085067977.1\|710314_711463_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP019706.1\|WP_085067980.1\|715520_718184_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP019706.1\|WP_085067968.1\|699085_700495_+\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP019706.1\|WP_085072220.1\|721181_722597_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP019706.1\|WP_085067981.1\|718358_719123_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NZ_CP019706.1\|WP_085067970.1\|701696_702173_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP019706.1\|WP_085067969.1\|700496_701672_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|227036
NZ_CP019706.1\|WP_085067984.1\|723538_724393_-\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|374997
NZ_CP019706.1\|WP_085067967.1\|697707_699027_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877

Protein	Function_ID	Function_description	E-value
NZ_CP019706.1\|WP_157130143.1\|703455_706053_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP019706.1\|WP_085067978.1\|711967_713392_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP019706.1\|WP_085067982.1\|719660_721016_+\|aromatic-amino-acid-transporter-AroP	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP019706.1\|WP_085067972.1\|702881_703244_-\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	1.25223e-63
NZ_CP019706.1\|WP_085067979.1\|713611_715507_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP019706.1\|WP_085067983.1\|722593_723568_+\|family-43-glycosylhydrolase	gnl\|CDD\|226449	COG3940, COG3940, Predicted beta-xylosidase [General function prediction only].	0
NZ_CP019706.1\|WP_085067971.1\|702169_702850_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.99889e-47
NZ_CP019706.1\|WP_085067974.1\|707964_708558_+\|serine-acetyltransferase	gnl\|CDD\|100045	cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.	3.61142e-35
NZ_CP019706.1\|WP_085067985.1\|724389_724965_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.78432e-138
NZ_CP019706.1\|WP_085067973.1\|706415_706919_-\|phenolic-acid-decarboxylase	gnl\|CDD\|368644	pfam05870, PA_decarbox, Phenolic acid decarboxylase (PAD). This family consists of several bacterial phenolic acid decarboxylase proteins. Phenolic acids, also called substituted cinnamic acids, are important lignin-related aromatic acids and natural constituents of plant cell walls. These acids (particularly ferulic, p-coumaric, and caffeic acids) bind the complex lignin polymer to the hemicellulose and cellulose in plants. The Phenolic acid decarboxylase (PAD) gene (pad) is transcriptionally regulated by p-coumaric, ferulic, or caffeic acid; these three acids are the three substrates of PAD.	1.00732e-111
NZ_CP019706.1\|WP_085067977.1\|710314_711463_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.23294e-34
NZ_CP019706.1\|WP_085067980.1\|715520_718184_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP019706.1\|WP_085067968.1\|699085_700495_+\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.17477e-76
NZ_CP019706.1\|WP_085072220.1\|721181_722597_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	1.17988e-170
NZ_CP019706.1\|WP_085067981.1\|718358_719123_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	6.72181e-168
NZ_CP019706.1\|WP_085067970.1\|701696_702173_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.22181e-28
NZ_CP019706.1\|WP_085067969.1\|700496_701672_+\|glycosyl-hydrolase	gnl\|CDD\|227036	COG4692, COG4692, Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism].	8.62879e-81
NZ_CP019706.1\|WP_085067984.1\|723538_724393_-\|beta-lactamase-regulator-AmpE	gnl\|CDD\|374997	pfam17113, AmpE, Regulatory signalling modulator protein AmpE. AmpE is a family of bacterial regulatory proteins. AmpE in conjunction with AmpD sense the effect of beta-lactam on peptidoglycan synthesis and relay this signal to AmpR. AmpR regulates the production of beta-lactamase.	2.50035e-161
NZ_CP019706.1\|WP_085067967.1\|697707_699027_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.14048e-102

>NZ_CP019706.1|WP_085067975.1|709035_709272_-|hypothetical-protein
MKKKIIDALCLAAGVLLSASLLSGANVMFTNTWYPLPYKFSKFFVMIFCMQGVALTIKKSAIFYSKLKNDKGDFNHRY
>NZ_CP019706.1|WP_085067974.1|707964_708558_+|serine-acetyltransferase
MTDNTATPSLSGKFENVDAYEHLKECLRIEVLNRDGKKKFSWFKVLHRVVFGYKKNFYFWWRLANYMHTRPSPGLRKCARRINHKLLRKYGADISLEAFIGPGMKVNHYVGIIIRAESIIGKNINLRQNTTIGRKDSIDTSGKIIIGDNVDIGAHSCIIGDIVIGDNVTIGAMTFINKDVPANSIVYSEKSMFIRSK
>NZ_CP019706.1|WP_085067973.1|706415_706919_-|phenolic-acid-decarboxylase
MSFDKHDLSGFVGKHLVYTYDNGWNYEIYIKNSETIDYRIHSGLVGNRWVKDQHVYLARLASDVYKISWTEPTGTDVSLSVNLADKVFHGTIFFPRWVMNNPEKTVCFQNEHLDEMASYREAGPAYPTEVIDEFATLTLVRDVGENDDTIINCPASELPANFPDNLR
>NZ_CP019706.1|WP_157130143.1|703455_706053_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLDEYRKHVAERAAQGIVAKPLDASQMAALVELLKNPPAGEEEFLSDLLINRVPPGVDEAAYVKAGFLAAIAKGETTSPLVTPEKAIELLGTMQGGYNIHPLIDALDNEKLAPIAAKALSNTLLMFDNFYDVEEKAKAGNPHAQQVMQSWANAEWYLNRPALAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDEPGNVGPIKQIEALQAKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKKGGGVVLGGKIAPIFFNTMEDAGALPIEVDVNNLNMGDVIDIYPYKGEVRHHETNELLAEFALKTDVLLDEVRAGGRIPLIIGRGLTTKARESLGLPVSDVFRQAKDVVQSTRGFSLAQKMVGRACGVDGIRPGQYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVQTHHTLPDFIMNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLMEADADAEYAAVIEIDLAEIQEPILCAPNDPDDARLLSEVQNEKIDEVFIGSCMTNIGHFRAAGKLLDSHKGQLPTRLWVAPPTKMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVSSLLGRLPTPDEYQQFMAQVDKTAVDTYRYLNFDQLNQYTDKAKDVIFQTAV
>NZ_CP019706.1|WP_085067972.1|702881_703244_-|YacL-family-protein
MEYEFLRDVTNQVKVRMSMGHEAVGHWFNEEVKGNMALLDEVEAAAAQVKGSEREWLHQGHEYQLSLNGEEVMIRANQLAFDTDELEEGMSYYDEESLSFCGIEDFLAVITAYRAFMQGR
>NZ_CP019706.1|WP_085067971.1|702169_702850_+|SDR-family-oxidoreductase
MSRHALVTGASSGIGRAIVERLLQEGWQVSGLSRSAKGSEHPALRSIAVDLCDRAALANVLSELPPVDAFIHAAGMMQAAELGALNEEISQRLWYLHVLVAESIANALVDILPADGRIILIGSRTSRGAAGRSQYVSTKAAMAGMVRSWAAELAPRGITANVVAPGATATPMLSQPERASSPPKLPPIGRYIQPDEVAALVSFLLSPAAAAITGQELVICGGASLS
>NZ_CP019706.1|WP_085067970.1|701696_702173_+|YhcH/YjgK/YiaL-family-protein
MITGNLQALPLATLPDRLYALLARPECALTALQAMPDGRWQPEGAGWFCTIGSSETAPAGQRHTEYHRHWLDIQVLLAGEEIIRYDVADAREIPAEERKPDLFIVENMQLRQQLYLQPGDFAIFAPGEAHQALCAVDKPARVRKAVFKVSPELLRGKP
>NZ_CP019706.1|WP_085067969.1|700496_701672_+|glycosyl-hydrolase
MTQATLNLPTESITEIVDGDPERMTAMLPSPCPQNHAANLLPLPNGDLLCVWFGGTQEGIADISIYCSRLDHGSRQWSTPQRLSEDASRSEQNPVLFLAPDKVLWLLWTAQKSGNQDTAIVRYRQSHDMGNSWGEINTLLDKPGTFIRQPMVVMPNGDWLLPVFYCQTEPGEKWVGNNDISAVKISRDNGQSWQDVPVPDSTGCVHMNITLLKDGSLLALFRSRWADFIWQSRSYDGGQSWSAPQPTELPNNNSSIQVTTLANGDLALVFNKMSAAGASERRASLYDEIEDDEDDIAAQPIMPAGRSAFWGAPRAPMTLAISKDGGRSWPWQRNLEEGDGYCMTNNSQQKLNRELSYPSIKQGPDGLLHIAYTWHRQAIKYVCVNESWVTS
>NZ_CP019706.1|WP_085067968.1|699085_700495_+|sodium:solute-symporter-family-protein
MKEFTAMDTLIIIGIVVAYILFTTWMTWRLRSKSSGDFMEGSRAMPAFIVGVMLMSEYIGAKSTIGTAQAAFENGFAASWSVIGAAIGFPLFGLLLVKRIYNTGKITISGAIAEKYGTSTKNIISVIMIYALLLVNVGNYVSGAAAISTVLKVNLPVAAFITAIVSTFYFAFGGMKGMAWVTLLHSGIKYFGILVILGVALHMSGGITPMVQQMPDFYWTWDGHIGASTIVAWLIGTIGSIFCTQFVIQAISSTKDAASAKRATWVAFLFCLPIAIAIAIIGVAAKFLHPNINSLYALPVFLQDMNPWLAGLVTTSLVASIFVSVSTVALAIASLIVKDFYVPMRNPTPEREFKMTRWLSLAIGFLPLIFVLFVPEVLKLSFFTRAIRLSISVVAMMAFYLPFFKSTRGANAGLIGACVVTSVWYLLGDPFGINNMYIALITPAVIMVLDHLIPQKRPVTKTNMQKSGA
>NZ_CP019706.1|WP_085067967.1|697707_699027_+|MFS-transporter
MNTVAGNTRIRWWIAGLMWLAIAINYIDRTVLSAAAPHLIDELNLTPELMGFIMAAFFWSYSLLQIPAGWFADRFGQKKGLGIAVAWWSIATSVMGLATGFKSLLALRLALGVGEAAAYPSNAGIAARWFPDKERATVSGLFDSASKFGGAVAMPLIVWMIALFDWRITFGIIGSIGLLWVIAWYFIYAENPEEHRHISREEISLIRNGQLRKHGDKNIRPMKWYRLLRYRNIWAMCIGFFTINYTSYFFITWLPTYLVKDKGMDFIKMGMIAALPLLCGMIIEVLAGWMSDRVVHKKLLSLTATRKLFLSIGLLMALCIGFAPFTDSVFMTVLLLCVAKSGTTVAASQVWALPGDVAPKNSVSVVAGLQNTVSNMGGAVGPIVTGAIVAATGSFTWALVFSALLVVIGILNYLFLMGKVEPISDDENIPAHQVSMGQA
>NZ_CP019706.1|WP_085067977.1|710314_711463_-|acyltransferase
MSTTRGWSTELEGLRGFASLWVLLGHASLLVHCAIPIVSMPSIGVDLFILLSGYLMAKNYIERQEKEPWNSANTVKKFWIRRFFRIAPLYYLLLIIAVAYGPWFGEMRDTIAQFYPTTATETSRYSDQSVANIIAHISFIFGLLPEYGFNTVLPDWSIGLEMQFYMLFPFIMLLTLRLGYVPTLLLIMLLCTIGRFVLAGYYEAFIMPSMILIKLHVFIAGMLMAEAVRKKQLGYLLLALIAPVVSAIIAIGVSKLQIVFEAAMIIGMTAVLWQHRPGSLMEKLIKLPRAILTNRVSTWLGDVSYSVYLVHLLIVVPAIALLLRDYNMDALSAPLRFAIICGICLPLTYGIATLLYRFVEKPGIQLGKRVLAPRPSAQDVTG
>NZ_CP019706.1|WP_085067978.1|711967_713392_-|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPQTDIDKIRTWKEKVINQLTGGLSGMAKGRKVKVVNGLGKFTGANTLVVEGENGATTINFDNAIIAAGSRPIQLPFIPHEDPRVWDSTAALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKNLDAGKAGVEVDERGFIRVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEQGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEIFEGSITDLPNPKAKKK
>NZ_CP019706.1|WP_085067979.1|713611_715507_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAIEINVPDIGADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKINTGDKVETGSLIMIFEAEGAAEAEPAPAAEKKADAQPAAAAESKEVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKINTGDKVSTGSLIMVFETAASGNAAAAKPQVKEEAATAPAASGGSATKEVNVPDIGGDEVEVTEILVKAGDKVTAEQSLITVEGDKASMEVPAPFAGTVKEIKINTGDKVSTGSLIMLFEVEGAAPAAAPAAQKEASAPAAKAEQAAPAASAPAKASGKDEFAENDAYVHATPVIRRLAREFGVNLAKVKGTGRKGRILKEDVQTYVKDAVKRAESAPAAATGGGLPGMLPWPKVDFSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELETFRKQQNAEAEKRKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQKLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSSMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLVM
>NZ_CP019706.1|WP_085067980.1|715520_718184_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSERLHNDVDPIETRDWLQAIESVIREEGVERAQFLIDQVLSEARKGGVNVAAGSAVSNYVNSIAVEEEPDYPGNTSLERRIRSAIRWNAMMAVLRASKKDLELGGHLSSFQSSATIYEVCFNHFFRARNDKDGGDLVYFQGHISPGVYSRAFLEGRLTEEQMNNFRQEVHGKGLSSYPHPKLMPDFWQFPTVSMGLGPLSAIYQAKFLKYLEHRGLKDTSAQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFGGAGWEVIKVIWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSRNGAYVREHFFGKYPETAALVKDMSDDEIFALNRGGHDPKKIYAAFKKAQETKGKPVVILAHTIKGYGMGDTAEGKNIAHQVKKMNMEGVRYVRDRFNVPVTDENLETLPYVTFEEGSEEYNYLHGQRQKLGGYLPSRQPNFTEKLELPSLEDFAPLLEEQNKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGASWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQALTIPNCISYDPAYAYEVAVIMQDGLTRMYGEAQENIYYYITTLNENYRMPAMPQGAEEGIRKGIYKLETLEGSKGKVQLLGSGAILRHVREAAEILAKDYGIGSDVYSVTSFTELARDGQDCERWNMLHPTEQARVPYIAQVMNDAPAVASTDYMKLFAEQVRSYIPASDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADAITKFNIDADKVNPRLA
>NZ_CP019706.1|WP_085067981.1|718358_719123_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYSKIRQPKLSDAIEQQLESLIMEGTLRPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQKNLWQSLSDPLVALLADHPESQFDLLETRHALEGIAAYYAALRGTEEDLQRIRDCHLAIQHTQQSGDLDAEADAVMQYQIAVTEAAHNVVLLHLLRSMGPMLEKNVRQNFELLYSRREMLAQVSSHRASIFEAIVAREPEKAREASHRHLAFIEEILLDRSREQTRRERSLRRLQQRKE
>NZ_CP019706.1|WP_085067982.1|719660_721016_+|aromatic-amino-acid-transporter-AroP
MEQQQGDTLKRGLKNRHIQLIALGGAVGTGLFLGIGQTIQMAGPSVLLGYAIGGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGNFAGFASGWNYWVLYVLVAMAELTAVGKYIQVWWPDFPSWATAAVFFVLINAINMTNVKVYGEMEFWFAIIKVVAVVGMILFGGWLLLSGQGGPQASVSNIWAQGGFFPHGISGLVMAMAVIMFSFGGLELVGITAAEADDPSKSIPRATNQVIYRILIFYIGSLAVLLSLYPWVKVVGESSPFVMIFHDLGETLVANVLNVVFLTAALSVYNSCVYSNSRMLYGLAKQGSGPQALLKVDRRGVPYVALGVSALATAICVLINYFMPGEAFGLLMALVVSALVINWAMISLAHLKFRRAKDRQGVQTRFRAILYPAGNWICLVFLAAILVIMLMTPGMAISVWLIPVWLVVLAMGYAIKNRSQRS
>NZ_CP019706.1|WP_085072220.1|721181_722597_+|MFS-transporter
MKGSALPFREKLGYGMGDAGCNMIGGAIMLFLSYFYTDVFGLSPALVGVLLLSVRVLDAVTDPLMGAIADRTQSRWGRFRPWLLWVSVPYVVFSVLMFTTPDWSYEYKVVYAFVTYFLMSLAYTAINIPYCSLGGVITNDPHERVSCQSYRFVMVGIATLILSLTLLPMTEWFGGGDRARGYQMAMAVMAIIGLLMFLYCFATVRERIRPAVPSNDDLKNDLRDVWKNDQWVRILLLTFCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSTLAKVMTDRWCKLKVFFWTNIALAIFSCGFYFLNPQATVLVTLMYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSFYGYDAGAKQQGSSALNGIVLLFTVIPGIGYLITAGVVRLLKVDRHLMQTIQQDLAKRRENYRELSALREGNAFDIKPEGTAS
>NZ_CP019706.1|WP_085067983.1|722593_723568_+|family-43-glycosylhydrolase
MTQWPNPLIEQRADPFILRYEDRYYFIASVPEYDRLELRCADTLVDLAAAQPVVVWRKPDVGPMSALIWAPEIHYIDGQWVIYFAAAPTREIKEGLFQHRMYALTCDDADPLSGNWQERGRIRTPIDSFSLDATTFHHQGKQWYLWAQKDPAIPGNSNLYLAELENPWTLKGKPVMLSRPEYEWECAGFSVNEGPAVIRHGNRLFVSYSASATDENYCLGLLWIDVDDDPMQPANWNKSARPVFSTSWENRQYGPGHNSFTVDEAGNDLLVYHARNYTEIEGDPLWDPNRHTRIKDIRWDANGMPDFGVPPADTLLNQRAVNSQ
>NZ_CP019706.1|WP_085067984.1|723538_724393_-|beta-lactamase-regulator-AmpE
MTLFSLLLVLGWERLFKMGEHWQLDHRLEPFFRRRRHFSLWQTTAMTLVAMLVVLVVILSLRGLFFGMVQLLFWILTGILCIGAGSVRLHYHAYLKAASHGDANACSAMAEELTLIHGMPVECNQQETLKELQNALLWINYRFYLAPLFWFVVGGAYGPVLLVGYAFLRAWQSWLAKHYTPLERARSGIDRILHWVDWIPVRLAGVAYALLGHGERALPAWFAALSDLRRPQYQVLTHLAQYSLERDERWDSVETPRIAVALAKKVSLVIVVVVALLTIYGTLV
>NZ_CP019706.1|WP_085067985.1|724389_724965_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MELKDGWLMGVRHVPSPHFNIRPQGEVPSLLVVHNISLPPGEFGGPWIDALFTGTLDPAAHPYFAEIAHLRVAAHCLIRRDGEIVQYVPFDKRAWHAGVSCWQGRENCNDFSIGIELEGTDTLAYSDAQYHALQALTHLLMQHYPITPAQITGHSDIAPERKTDPGPAFDWARFLRGLPEAASLHLPERNA

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Crispr_ID: NZ_CP019706_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019706_2

3146298-3146378

Orphan

Consensus_repeat	Method
TTTATCCTCGCGCGCGCGTTTAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP019706_2

>merge|NZ_CP019706|2|3146298-3146378|CRISPRCasFinder
TTTATCCTCGCGCGCGCGTTTACGCGACGCCTAATGCAATTCTGGCAATCCCGGAAAATTTATCCTCGCGCGCGCGTTTAC

>NZ_CP019706|2|2|3146298-3146378|CRISPRCasFinder
TTTATCCTCGCGCGCGCGTTTAC	GCGACGCCTAATGCAATTCTGGCAATCCCGGAAAA
TTTATCCTCGCGCGCGCGTTTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019706.1\|WP_085071208.1\|3138225_3139521_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NZ_CP019706.1\|WP_085071212.1\|3142005_3143433_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP019706.1\|WP_085071217.1\|3146653_3147469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375857
NZ_CP019706.1\|WP_085071213.1\|3143602_3144112_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NZ_CP019706.1\|WP_085071215.1\|3145094_3145922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375857
NZ_CP019706.1\|WP_085071222.1\|3149051_3151376_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182156
NZ_CP019706.1\|WP_085071223.1\|3151561_3151789_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_CP019706.1\|WP_085071225.1\|3154515_3155613_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP019706.1\|WP_085071224.1\|3153331_3154369_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133415
NZ_CP019706.1\|WP_157130183.1\|3145918_3146236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376019
NZ_CP019706.1\|WP_085071207.1\|3136799_3138215_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP019706.1\|WP_085072332.1\|3152013_3153180_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	unknown	unknown	gnl\|CDD\|183117
NZ_CP019706.1\|WP_085071219.1\|3147862_3148051_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350771
NZ_CP019706.1\|WP_157130184.1\|3147465_3147780_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376019
NZ_CP019706.1\|WP_085071211.1\|3141417_3141963_+\|porin	unknown	unknown	gnl\|CDD\|284781
NZ_CP019706.1\|WP_085071221.1\|3148418_3148736_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376019
NZ_CP019706.1\|WP_157130182.1\|3135767_3136526_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	unknown	unknown	gnl\|CDD\|183101
NZ_CP019706.1\|WP_085071205.1\|3135213_3135771_-\|HTH-type-transcriptional-regulator-PuuR	unknown	unknown	gnl\|CDD\|182158
NZ_CP019706.1\|WP_167373304.1\|3148065_3148422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375857
NZ_CP019706.1\|WP_085071210.1\|3139831_3141193_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605

Protein	Function_ID	Function_description	E-value
NZ_CP019706.1\|WP_085071208.1\|3138225_3139521_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP019706.1\|WP_085071212.1\|3142005_3143433_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP019706.1\|WP_085071217.1\|3146653_3147469_+\|hypothetical-protein	gnl\|CDD\|375857	pfam18431, RNAse_A_bac, Bacterial CdiA-CT RNAse A domain. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. Structure analysis of CdiA-CT shows that it adopts the same fold (with two beta-sheets forming an overall kidney shape) as angiogenin and other RNase A paralogs, but the toxin does not share sequence similarity with these nucleases and lacks the characteristic disulfide bonds of the superfamily. Furthermore, structural comparison analysis identified human angiogenin, Rana pipiens protein P-30 (onconase) and mouse pancreatic ribonuclease (RNase 1) as the closest structural homologs of CdiA-CT.	1.733e-43
NZ_CP019706.1\|WP_085071213.1\|3143602_3144112_+\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	1.98257e-18
NZ_CP019706.1\|WP_085071215.1\|3145094_3145922_+\|hypothetical-protein	gnl\|CDD\|375857	pfam18431, RNAse_A_bac, Bacterial CdiA-CT RNAse A domain. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. Structure analysis of CdiA-CT shows that it adopts the same fold (with two beta-sheets forming an overall kidney shape) as angiogenin and other RNase A paralogs, but the toxin does not share sequence similarity with these nucleases and lacks the characteristic disulfide bonds of the superfamily. Furthermore, structural comparison analysis identified human angiogenin, Rana pipiens protein P-30 (onconase) and mouse pancreatic ribonuclease (RNase 1) as the closest structural homologs of CdiA-CT.	2.96941e-39
NZ_CP019706.1\|WP_085071222.1\|3149051_3151376_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|182156	PRK09939, PRK09939, acid resistance putative oxidoreductase YdeP.	0
NZ_CP019706.1\|WP_085071223.1\|3151561_3151789_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	2.06032e-35
NZ_CP019706.1\|WP_085071225.1\|3154515_3155613_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	2.73117e-31
NZ_CP019706.1\|WP_085071224.1\|3153331_3154369_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133415	cd04788, HTH_NolA-AlbR, Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	4.46836e-34
NZ_CP019706.1\|WP_157130183.1\|3145918_3146236_+\|hypothetical-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	1.13076e-10
NZ_CP019706.1\|WP_085071207.1\|3136799_3138215_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.89318e-131
NZ_CP019706.1\|WP_085072332.1\|3152013_3153180_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	gnl\|CDD\|183117	PRK11397, dacD, serine-type D-Ala-D-Ala carboxypeptidase DacD.	0
NZ_CP019706.1\|WP_085071219.1\|3147862_3148051_-\|hypothetical-protein	gnl\|CDD\|350771	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins. Proteins belonging to the SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprise a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. The bacterial SNF2 present in this family are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.47933e-13
NZ_CP019706.1\|WP_157130184.1\|3147465_3147780_+\|hypothetical-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	1.66552e-17
NZ_CP019706.1\|WP_085071211.1\|3141417_3141963_+\|porin	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	3.89333e-49
NZ_CP019706.1\|WP_085071221.1\|3148418_3148736_+\|hypothetical-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	5.39776e-15
NZ_CP019706.1\|WP_157130182.1\|3135767_3136526_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase	gnl\|CDD\|183101	PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional.	4.97927e-89
NZ_CP019706.1\|WP_085071205.1\|3135213_3135771_-\|HTH-type-transcriptional-regulator-PuuR	gnl\|CDD\|182158	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR.	8.83605e-116
NZ_CP019706.1\|WP_167373304.1\|3148065_3148422_+\|hypothetical-protein	gnl\|CDD\|375857	pfam18431, RNAse_A_bac, Bacterial CdiA-CT RNAse A domain. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. Structure analysis of CdiA-CT shows that it adopts the same fold (with two beta-sheets forming an overall kidney shape) as angiogenin and other RNase A paralogs, but the toxin does not share sequence similarity with these nucleases and lacks the characteristic disulfide bonds of the superfamily. Furthermore, structural comparison analysis identified human angiogenin, Rana pipiens protein P-30 (onconase) and mouse pancreatic ribonuclease (RNase 1) as the closest structural homologs of CdiA-CT.	1.54912e-39
NZ_CP019706.1\|WP_085071210.1\|3139831_3141193_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.21787e-48

>NZ_CP019706.1|WP_157130183.1|3145918_3146236_+|hypothetical-protein
MNRLQKWRICRKYSSLGSMIRVFFSPQDCDSFGETIEVITQSYQEVFPGKEAQQALKTQIKEMLETTDDVDLSKRMSLITEEEFNPVKWGETWRSFLLRVLAVLE
>NZ_CP019706.1|WP_085071215.1|3145094_3145922_+|hypothetical-protein
MNTELQFAISPVQLAGVLDYHTVSEADALSNRLLGGLELALGTVELIGATALCLAPDPTLLTKAACVVTGTHSLDSINAAANRILTGYDTRTATFQLTEKLAKEAGASDSTAMYIGLTVDSAVPAAAGLAWGVSRIKYVRAGTLKLAEHEAVSRARIGGHTLKKHIAKTDEELLARLAQSTGLDAATSFESVQQAEKVITAALRANRFKIIRWANSVRGEQEALVITWNAGTKVGYGFRRGSKIKWPVNHVRVVLVCKEYLGKPYFILTAYPELL
>NZ_CP019706.1|WP_085071213.1|3143602_3144112_+|DUF4102-domain-containing-protein
MAISDTKLRSLYGKPYSGPAEITDSDGPGLRITPKGVISFQFRYRWGGKQHRLGLGRYPAITLRDARNKAADLKEYLDRGINPRAMVGASATKAKPTVKNCLDYWEENYVRMALRPKTQELYATTVLKYMRAAFAGRYPDAGRAGTLSTGASDRASSDMQSVQARRRLQ
>NZ_CP019706.1|WP_085071212.1|3142005_3143433_-|exodeoxyribonuclease-I
MTDKQNQPTFLFHDYETFGKSPALDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMITGITPQLAQARGVKEAEFARRIHDLFTVENTCVVGYNNVRFDDEVTRNLFYRNFYDPYAWSWQNGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEQLTQANGVEHTQAHDAMSDVYATIAMAKLVKTKQPKLFDFLFSHRTKQKINTLIDIPQMKPLMHISGMFGALRGNTSWIAPLAWHPENRNALIVCDLAGDITPLLELDADALRERLYTPRQQLGDDAAVPIKLVHINKCPVLAPANTLRPEDAGRLGIDRQHCLNNLAVLRQHAEIREKVVALYAEAEPFIPSPDVDAQLYNGFFSDADKAAMNIIQQTAPANLPALDLTFNDARIAPLLFRYRARNFPGTLDDSEQQRWLQHRREALNSERIESFLLELESLANLYDGDSEKLTQLKALYDYARELVS
>NZ_CP019706.1|WP_085071211.1|3141417_3141963_+|porin
MFKKVVVSSGLALMLATGAAQAIEGSVDVGEHYTNLNVGLGTTSPGLSLSGNWMRSDHDGDVSGLRLGYNVEIGSVFLTPGIKAMWIDPEDGKSGFAAAVGAGISLPVTKMIGLYGEYYYSPESFTDHLDSYQEASGGISFTPISLLNVRVGYKYAELNNKGDRKDNVLADGPYIGASLRF
>NZ_CP019706.1|WP_085071210.1|3139831_3141193_+|APC-family-permease
MTHNTHTAQPRTQLKKTLTLLPVVMIGLAYMQPMTLFDTFGIVSGLTDGHVATAYAFALIAILFTALSYGKLVRRFPSAGSAYTYAQKTISPHVGFMVGWSSLLDYLFMPMINILLAKIYFEALVPDLPSWIFVVLLVGFMTLTNLRGIKTVANFNSLIVVLQVAVMIALMAMVIYGVAHGEGAGTLVSSRPFWSENAHVVPMITGATILCFSFLGFDGISSLSEETKDAERVIPKAIFLTALVGGIIFIVVSYFLQLYFPDISRFKDPDASQPEIMLYVAGKTFQFGILIFSCITVLASGMAAHAGVSRLMYVMGRDGVFPERFFGYVHPKWRTPALNVLLVGAIALLAIRFDLVTATALINFGALVAFTFVNLSVIAQFWLREKRRYTLKDNINFLLLPLCGALTVGALWVNLEESSMVLGLIWAAIGIIYLAVVTRSFRNPVPQYSEESL
>NZ_CP019706.1|WP_085071208.1|3138225_3139521_+|4-aminobutyrate--2-oxoglutarate-transaminase
MQTNQQWQARREAAVTPGVGNSLQVYIAKARNAELWDVEGRRYIDFASGIAVLNTGHNHPDVMRAVQAQLECFTHPCFQVTPYGSYVELAEKLNALVPIAEPTQTLLMSTGAEAVENAIKVARIATGRSGVIAFRGGFHGRTLLGMALTGKVQPYKKGYGPFPGGIFHAPYPISYLGISESQALGALQGIFAADVSPDDVAAIIIEPVQGEGGFYAASPNFMRQLRHLCDEHGIVLIADEIQSGFCRTGKTFAIEHSGVEPDLITMAKSLAGGFPLSAVVGRASLMQKAQAGGLGGTYAGSPMGVAAALAVVEIIEREQLNLRAQQQGEQVVAFLQQLATQYDCIGDIRHLGAMIAMELVEEGDAQRPAKALTQALVQEAGRQGLVLLACGVRANVIRFLIPLTAEKEIVSEGLNILSSSLQVVQNMRPAK
>NZ_CP019706.1|WP_085071207.1|3136799_3138215_+|glutamine-synthetase
MTNLVEVEDFTRHSEEMRTSAFQNEVKTYLERHPETQYVDILLNDLNGIFRGKRIPIGSLAKLEKGCYFPASVFAMDILGNTVEQAGLGQALGEPDNICTPVEGTLVPSASDPDRIAQLLLTMRNQDGTPFDVEPRNVLNNLWQRLRNRGLFPVVAVELEFYLVDKQRDHDGFIQPPCTPGSDERSMQSQVYSVDNLDHFAQVLGDIDRLAQLQGIPTDGALAEASPGQFEINLRHTRNVLSACDHALQLKRLIRQVAENHGMTATFMAKPYEEYAGSGMHVHVSMLDAADHNAFACDDGSDSPLLKRALAGMIDLMPASMALLAPNVNAYRRFCPESWVPLQASWGHNNRTVALRIPCGDIENRRVEYRVAGADANPWLVMSAIFAGILYGLDNALTLPAAVTGNGHEAEGTPLPVRQSEALDLFARSRALQELLGERFSFVWHCCKHHELMQFERLITATEIDWMLKNA
>NZ_CP019706.1|WP_157130182.1|3135767_3136526_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase
MERIIDNPLIGVVMCHTIKDGHPGWVLYQKYLDAIMDAGGVVIALPHRPGLGETISQRTLPLLDGLLLPGSPSNIEPWRYGAPGKEEESDPGRDELAMQLIPRALALRLPLLAICRGMQELTVAAGGTLNRQLPDEKVLHYADTDAPLAEQYAPAHHIALTPDGQLARLLGSAAPLQVNSLHKQGIKAPGPRLRPEAIAEDGVIEAVSVPEHPFAIGVQWHPEWQYQHSCASSRLFEAFINACHQYRKEKRL
>NZ_CP019706.1|WP_085071205.1|3135213_3135771_-|HTH-type-transcriptional-regulator-PuuR
MNEATLAPGRRLSQIRQELGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLTVYGLSLSEFFSEAVKNSPPKIVIEQDALIDIGSQGVSLKLIHNGSPRHNLAMLLETYQPGSTTGEKIRHPGEETGTLLEGEITLTINGQCYQLHAGQSYVIDTGQPHSFSNTSNRVCRIVSAHTPANF
>NZ_CP019706.1|WP_085071217.1|3146653_3147469_+|hypothetical-protein
MNTELQFAISPVQLAGVLDYHTVSEADALSNRLLGGLELALGTVELMGATALCLAPDPTLLTKAACVVTGTHSLDSINAAANRILTGYDTRTATFQLTEKLAKEAGASDSTAMYIGLTADIGVPSAAGLAWGVSRIKYVRAGTPKIEHEGIKKIGGHTIRKHVAKTDEELLARLAQSPGLKAATTFESLQQAEKVITAALRANRFKIIRWANTTRGDNTLEIFWDAGTKVGYGFRQGSKIKWPVNQVKVVLKREEFRGMPYFILTAYPELL
>NZ_CP019706.1|WP_157130184.1|3147465_3147780_+|hypothetical-protein
MNRLQRWRLRRKYSLLGTMIRVFFGQDFDIFGETVEEIMHSYRYDHQNPDVVSGLKNEISEMLKTEDDSELVAHMELLAENQFDPELWGETWRSFLLRVLAVLE
>NZ_CP019706.1|WP_085071219.1|3147862_3148051_-|hypothetical-protein
MLRTINYDNLVWLVETLGDRWPFGTVIADESTRLKSFRLRGGGKRAREDKFSGIARIALGVA
>NZ_CP019706.1|WP_167373304.1|3148065_3148422_+|hypothetical-protein
MGGHTIRKHVAKTDEELLARLAQSPDLKAATIFESLQQAEKFISAGLRANRFKIIRWANFGTNKKDLVIIWDAGTKVGYGFRQGSKIKWPVNHVKIVLKLQEYRRMPYYIVTAYPELL
>NZ_CP019706.1|WP_085071221.1|3148418_3148736_+|hypothetical-protein
MKSFIKALHVWRIKRRYAFTGILLQAYFFDDFDIYGDTVEEIVASYRECYKDNYNLLRAEVEELLLLPDSELAERMALLAENQFDPELWGETWRSFLLRVLAALE
>NZ_CP019706.1|WP_085071222.1|3149051_3151376_-|FdhF/YdeP-family-oxidoreductase
MKHKNRTIGIAPYGGSAGGWGALKAVADALRGQMSVKQDVIALFKVNQPQGFDCPGCAWPDPRHASSFEFCENGAKAVSWEATSKRTTPEFFAAHTVSELWQRSAFELEGEGRLTHPMKYDAASDTYQPIEWETAFREIGERLQSYSDPDSVEFYTSGRASNEAAFLYQLFAREYGTNNFPDCSNMCHEPTSVGLPQSIGVGKGTVELEDFDHCDLVLCIGHNPGTNHPRMLGTLREVSKRGATIVAINPLRERGLERFTSPQSPIEMLSLGSTTLASTYYKVRVGGDAAMLKGVMKALLAMHERALKEGQPGVIDEEFIREHTEGFEALKQDLEATEWSHILKVSGMDYKEILNIARLYATSEKTIICYGMGITQHQYGTQNVQQIANLLLMRGNIGKRGAGICPLRGHSNVQGDRTVGITEIPSQELLDSIEKVFGFKPPQHHGHGAVAAIQAMRDGKAKALLCLGGNLAEAMSDPNVTFTAMRNLDLVVHMATKLNRSHLLLGKHNYILPVLGRTELDVQASGEQSITVEDSMSMVHASRGMLKPASPWLKSEPAIVAGLAKATLPNTKVNWDQMVGDYSFIRAAIEAVFPAFKDYNRRILQPGGFRLRNAASEREWNTPSGRAQFKVMEGINEDPRSLKCHDLVLTTLRSHDQYNTTLYGLNDRYRGVTGRRDVLFINADEAEKRQLRVGDKVNIIALDPEGKRTDRRMDNLTIVVLDMAGGSAGAYYPEANVMVPLDSHDTASGIPAYKSIPIEMEPCEMPVETSGALR
>NZ_CP019706.1|WP_085071223.1|3151561_3151789_+|YgdI/YgdR-family-lipoprotein
MKKTALLAFAFAAALPLAGCSSSNYTIHTNDGRTIVSDGKPKEDNATGLIKYKDANGNEQQINRSDVKSMTEIPH
>NZ_CP019706.1|WP_085072332.1|3152013_3153180_+|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD
MLKRRQFATLTGFLFLAFQAHAASISFPLTPPPVDAASWVLMDATTGQILTEGNADEQRNPASLTKLMTGYVVDRAIDQHRISRDDKVTIGQDAWGAGNPVFKGSSLMFLKPGEQVTVRDLSRGVIIDSGNDACVALADYVAGSQDAFVKMMNDYAAKLGLTHTHFETVHGLDAPGQHTTARDLAVLSRAIINGEPDFYQMYSEKSLTWNGITQQNRNGLLWDKNLHVDGLKTGHTESAGFNLIASSLEGRHRLIAVIMGGKSAKGREEQARKLLIWGNSNFDTVQLFHAGKALGKETVWYGNPHQVEVGTAGDIYLSVPRSAIESIKAKYVIDRKDLEAPLKQGEKVGMIQVIDKDQVLASYPLMTLNKVEEGGIVTKISDYLRQKF
>NZ_CP019706.1|WP_085071224.1|3153331_3154369_+|MerR-family-transcriptional-regulator
MLLQAGELARRTGVTVRTLHYYHSIGLLVPSSRSEAGYRLYNHDDIRRLHQIQALKRLGVPLAEIDPLLSDGALSLPQVLTQQIEALDRQLTQMQQLRQRLGQLHQQLSRGGEPELTDWLTTLEMMTMYDNYFTAEELTQLPFYQADAQREAEWQQLVQKLLELQEIGIAPQEPQAQALARRWMQMLEHDTAQNPAFLQRLTTMHLNEPAMQQQTGITPAMLDYVTRAFAESKLAIFRRYLDEQEYAFVRAHYFDRMQEWPALISRLREAMMRGVAPEAEEARALGAHWLALFRSYASDNPQTQNKIRQAMQQEPQLMEGTWLTPDLLQYLQAAVTAHMAPGTER
>NZ_CP019706.1|WP_085071225.1|3154515_3155613_+|FUSC-family-protein
MITFCFLLPWRLCLRPDKPLSSVEFSVYRHYRIVHGVRIALGFVLTFLLVRLSEIPEGSWPLITLVVVMGPVSAWGNVFPRAFQRIGGTFFGSISGLIALKLELISLPVMLAWCTVVMFICGYLTLGRRPYMALLIGITLAVVCGAPAGDMTTALWRSGDVILGSLLALLFTSIWPQKAYIHWRIKLSDSLSAMAKIYHAGFSPNLVDKPRLDKPLQQVLSDVVRMRTLLEPASKETRIPKSVLEGIQTTNRNILCTLELQINAWWSSRASHLILLNASTLRRTQQMTENTFNALAEMLIKGNADRVAANNHELTEIVRELRQLIAENDSDRLVETPIHGYVWLSLELAKQLERLSDLIRLAMRK

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Crispr_ID: NZ_CP019706_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019706_3

3805510-3805604

Orphan

Consensus_repeat	Method
GGCGGCGCAGTACTGGGCGGCTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP019706_3

>merge|NZ_CP019706|3|3805510-3805604|CRISPRCasFinder
GGCGGCGCAGTACTGGGCGGCTTCCTGGGTAATACGGTAGGCGGCGGCACTGGCCGTAGTCTGGCGACTGCAGGCGGCGCAGTACTGGGCGGCGT

>NZ_CP019706|3|3|3805510-3805604|CRISPRCasFinder
GGCGGCGCAGTACTGGGCGGCTT	CCTGGGTAATACGGTAGGCGGCGGCACTGGCCGTAGTCTGGCGACTGCA
GGCGGCGCAGTACTGGGCGGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019706.1\|WP_085071816.1\|3811760_3812456_+\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951
NZ_CP019706.1\|WP_085071815.1\|3811251_3811659_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NZ_CP019706.1\|WP_085071808.1\|3803908_3805027_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP019706.1\|WP_085071801.1\|3795718_3797728_+\|choline-BCCT-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
NZ_CP019706.1\|WP_085071813.1\|3808863_3810498_+\|phosphoethanolamine-transferase-EptA	unknown	unknown	gnl\|CDD\|183224
NZ_CP019706.1\|WP_157130208.1\|3801452_3802727_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP019706.1\|WP_085071799.1\|3793478_3794939_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP019706.1\|WP_085071814.1\|3810536_3811127_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP019706.1\|WP_085071800.1\|3794950_3795556_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP019706.1\|WP_085071810.1\|3806840_3807362_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182357
NZ_CP019706.1\|WP_085071807.1\|3803574_3803889_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236902
NZ_CP019706.1\|WP_085071804.1\|3800534_3801395_-\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NZ_CP019706.1\|WP_085071803.1\|3799873_3800479_+\|glutathione-transferase-GstA	unknown	unknown	gnl\|CDD\|182533
NZ_CP019706.1\|WP_085071811.1\|3807453_3808350_-\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227322
NZ_CP019706.1\|WP_167373298.1\|3805831_3806275_-\|transcriptional-regulator-SlyA	unknown	unknown	gnl\|CDD\|179596
NZ_CP019706.1\|WP_085071806.1\|3802859_3803516_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|235555
NZ_CP019706.1\|WP_167373305.1\|3808420_3808660_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|225850
NZ_CP019706.1\|WP_085071802.1\|3798260_3799748_+\|dipeptide/tripeptide-permease-DtpA	unknown	unknown	gnl\|CDD\|181969
NZ_CP019706.1\|WP_085071818.1\|3813214_3814033_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP019706.1\|WP_085071817.1\|3812520_3812853_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|182759

Protein	Function_ID	Function_description	E-value
NZ_CP019706.1\|WP_085071816.1\|3811760_3812456_+\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	3.58374e-166
NZ_CP019706.1\|WP_085071815.1\|3811251_3811659_+\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	1.7343e-81
NZ_CP019706.1\|WP_085071808.1\|3803908_3805027_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0
NZ_CP019706.1\|WP_085071801.1\|3795718_3797728_+\|choline-BCCT-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP019706.1\|WP_085071813.1\|3808863_3810498_+\|phosphoethanolamine-transferase-EptA	gnl\|CDD\|183224	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional.	0
NZ_CP019706.1\|WP_157130208.1\|3801452_3802727_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP019706.1\|WP_085071799.1\|3793478_3794939_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP019706.1\|WP_085071814.1\|3810536_3811127_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.03691e-13
NZ_CP019706.1\|WP_085071800.1\|3794950_3795556_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	2.86261e-88
NZ_CP019706.1\|WP_085071810.1\|3806840_3807362_-\|superoxide-dismutase	gnl\|CDD\|182357	PRK10290, PRK10290, superoxide dismutase [Cu-Zn] SodC2.	7.71541e-86
NZ_CP019706.1\|WP_085071807.1\|3803574_3803889_-\|hypothetical-protein	gnl\|CDD\|236902	PRK11372, PRK11372, C-type lysozyme inhibitor.	6.09747e-27
NZ_CP019706.1\|WP_085071804.1\|3800534_3801395_-\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	0
NZ_CP019706.1\|WP_085071803.1\|3799873_3800479_+\|glutathione-transferase-GstA	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	1.61707e-135
NZ_CP019706.1\|WP_085071811.1\|3807453_3808350_-\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|227322	COG4989, COG4989, Predicted oxidoreductase [General function prediction only].	0
NZ_CP019706.1\|WP_167373298.1\|3805831_3806275_-\|transcriptional-regulator-SlyA	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	4.7966e-91
NZ_CP019706.1\|WP_085071806.1\|3802859_3803516_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|235555	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase.	7.70154e-127
NZ_CP019706.1\|WP_167373305.1\|3808420_3808660_-\|DUF1289-domain-containing-protein	gnl\|CDD\|225850	COG3313, COG3313, Predicted Fe-S protein [General function prediction only].	2.4911e-26
NZ_CP019706.1\|WP_085071802.1\|3798260_3799748_+\|dipeptide/tripeptide-permease-DtpA	gnl\|CDD\|181969	PRK09584, tppB, dipeptide/tripeptide permease DtpA.	0
NZ_CP019706.1\|WP_085071818.1\|3813214_3814033_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21143e-41
NZ_CP019706.1\|WP_085071817.1\|3812520_3812853_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|182759	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin.	1.18295e-81

>NZ_CP019706.1|WP_085071808.1|3803908_3805027_-|anhydro-N-acetylmuramic-acid-kinase
MKSGRYIGVMSGTSLDGVDVVLAAIDERMVAQQASYYHPVPQAIRQQLLAINQGQNLTLSQLGQLDTRLGRLFAEAVLTLMKQQNLSADDITAIGCHGQTVWHEPYGDAPSTLQIGDNNQIAAATGITVVGDFRRRDMALGGQGAPLVPAFHQALLMHPQERRMVLNIGGIANLSVLIPGRAPGGYDTGPGNMLMDAWIWRHRGLPYDKDGAWAGSGKVILPLLKQMLSDGWFALPAPKSTGREYFNFGWIEKQLSHFPGLATQDVQATLLELTAMTISEQVQLSGGCDRLLVCGGGCRNPLLMARLASLLAGTEVSTTDKVGINGDDMEGLAFAWLAYRTLSGLSGNLPSVTGAREASILGAIYPANRPPL
>NZ_CP019706.1|WP_085071807.1|3803574_3803889_-|hypothetical-protein
MHKHLILFPIMLLSGCGLFGKHQPQEQTLHYLCGTLPLTVKIAQQQAHFIMDGQPLTLTEQQSASGVIYSNGTYRFWSKGNSAFIERNQRIIVNDCQLQDAPAR
>NZ_CP019706.1|WP_085071806.1|3802859_3803516_-|pyridoxamine-5'-phosphate-oxidase
MSDNESLQQIAHLRREYTRGGLRRKDLPEQPLALFEQWLRQACDARVPDPTAMCVATVDAQGQPYQRIVLLKHYDERGMIFYTNLGSRKAQQLAENPRVSLLFPWHFLERQVMVLGQVEKLSTLEVVKYFHSRPRDSQIGAWVSQQSSRISARGVLESKFLELKQKFSQGEVPLPSFWGGFRVKIDAMEFWQGGENRLHDRFFYQRDGERWKIDRLAP
>NZ_CP019706.1|WP_157130208.1|3801452_3802727_-|tyrosine--tRNA-ligase
MTSSNLIKQLQERGLIAQVTDEDALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQDAGHKPVALVGGATGLIGDPSFKAAERKLNTTETVNEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNERYGVALQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKSDGTKFGKTEGGAVWLDAAKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLTAAQRITQSLFSGSLSEMTEADFEQLAQDGMPTITLEADADLQQALVNAELVPSRGQARTMINSNAVTVNGEKQSDAEYRFSDSDRLFGRYTLLRRGKKHYCLVCWK
>NZ_CP019706.1|WP_085071804.1|3800534_3801395_-|pyridoxal-kinase-PdxY
MKNILAIQSHVVFGHAGNSAAEFPMRRMGANVWPLNTVQFSNHTQYGHWTGTVMPASHLTDIVKGIANIDRLKTCDAVLSGYLGSAEQGEQILEIVRQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFHCKASLPASDIIAPNLLELEMLSGSSVTSVDEAVTVSRKLIAQGPKIVLVKHLARAGRRSDRFEMLLVTAQEAWHISRPLIDFGVRQPVGVGDLTSGLLLVNLLKGETLKQSLEHITAAVYEVMLKTHEMGEYELQLVAAQDLIAQPQQHFVAEKL
>NZ_CP019706.1|WP_085071803.1|3799873_3800479_+|glutathione-transferase-GstA
MKLFSKAGACSLSPHIILRECGLDFTQVNVDLASKKTERGEDYWQINPKGQVPALELDDGTLLTEGPAIVQYLADLKPDRQLLAPAGSLTRYHTLEWLNYIATELHKGFTPLFRPDTPEEVKVQQRQQLERKFRYVNDELQDKQWLVGSRFSVADAYLFVVSRWANAVQLDLSTLEALSAWQARVAERPAVIAALKAEGLA
>NZ_CP019706.1|WP_085071802.1|3798260_3799748_+|dipeptide/tripeptide-permease-DtpA
MSTANKHTDKAASLNAFKQPKAFYLIFSIELWERFGYYGLQAIMAVYLVKQLGMSESDSITLFSSFSALVYGLTAIGGWLGDKVLGTKRVIVLGALVLAVGYSLIAWSGHDVSMVYIGMATIAMGSGLFKANPASLLSTCYDKDDPRIDGAFTMFYMSINVGSLVSMMLTPWLAARYGWSVAFALSVVGLAITVINFLLCQKMVKNYGSKPDFAPLNMGKLLATLVGVVVLISIATWLLHNQFIARIVLGVIALGILLVFAKEAFALKGAARRRMIVAFLLMVEAIVFFVLYMQMPTSLNFFAIRNVEHNILGITFEPEQYQALNPFWIMVASPILAAVYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGASFANQLGIVSVSWLILSYALQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAMIAGKVANLMAVPEGVNDPLQSLQIYSDVFQKIGIATAVIAVLMLLTAPILNRMTIDHDVPKQP
>NZ_CP019706.1|WP_085071801.1|3795718_3797728_+|choline-BCCT-transporter-BetT
MPGSQDRDTIQSVTLNRAVFYGAALIIVLFSSCVLAFPEQASLILGKAQTWASATFGWYYMLVVAFYLGFVLFVALSRYGDIKLGPDHATPDFSYGSWAAMLFSAGIGSELLFFGASEPLDHLLLPPEGVAGSAQAARDGMVLTMMHWGLHGWGIYTLVAMALAYFAYRHNLPLALRSAFYPLIGDRINGPVGHAVDIFGIVGTMFGLATSLGIGVMQINSGISFLTGIAQSHTMQVILIVVVMGAATLSAVSGVDKGIRRMSELNMLLALLMFFFVLFTGPTAHLLNTLVQNFGDYFTSLPRKTFDLYAYGNSGKERWLGSWTVFYWAWWIAWSPFVGMFIARISRGRTLREFVIGVLLIPMGFTLAWLSVFGNSALSFFQHGMKQLGNIALSEPAMAVYHMLSSYPLATPLIVLAVAICFIFFVTSADSGALVVANLSCTGDSSSDAPNWLRIFWAAAVCMLTLSLLFAGDYTSLQTAVVLSALPFSLVLVLFVVAMYRALHHEKQRDRSRSLAIASPLLNGRYRPGHTSSWRRRLNRAISYPGRDMVYRFMDETARPALSKVVEVLEEKGLQVESDLSPQDFSMSIRVEHGDEAPFVYGVQMQGYSTPSFMRRGGNLPTASRYYRAEVHLWEGSQEYDLVGYTEEQIINDILDHYERHLQFLHLIR
>NZ_CP019706.1|WP_085071800.1|3794950_3795556_-|transcriptional-regulator-BetI
MPKVGMKAIRQAQLIKATLTVIDRVGLAEASIAVIAKEAGVSTGIVSHYFGDKNGLLDACMRQILADLYLAVERQRRQVPDTPEAQIRAIIDGNFDLSQVDAPVLKTWLVFWTNSLHQPRLQRLQSINDRRLWSNLTAQFARAMPRGQARAAGSSMAAIIDGLWLRMTLSSEPIEDGLRRARTLCYQNLALWLRSPEQNPH
>NZ_CP019706.1|WP_085071799.1|3793478_3794939_-|betaine-aldehyde-dehydrogenase
MAERRGNYINGREEPGQGAIFTSVNPANGKVLAEISAASREDVDRAVASAQAGQRIWRSYTPVERSRVLLKAVALLRERNQALAELETADTGKPISETAAVDIVTGADVLEYYAGLAPALQGEQIPLRDSALVYTRREPLGVCAGIGAWNYPIQIALWKSAPALAAGNAMVFKPSEVTPLSALELAKIYSEAGLPDGVFNVVQGAAEVGQALSQHPDIEKISFTGEVNTGKRVMADAALANLKEVTMELGGKSPLIVFDDADLARAVDGAMMANFYSSGQVCTNGTRVFVQRSLLSAFEQRLLEKMARIKTGDPRDPAVNFGPLVSAQHCEKVVSYLRLGKEEGARLLAGGQRITEGELAAGYYVEPTVFSDCHDEMRIVQEEIFGPVMSILVFDDEDEVIQRANATGYGLAGGIFTQSLNRAHRVIHQLEAGICWVNSWGESPAPMPVGGYKQSGVGRENGIDTLQHYTRTKSVLIELGDYPSAF
>NZ_CP019706.1|WP_167373298.1|3805831_3806275_-|transcriptional-regulator-SlyA
MKLDTPLGTDLARLVRIWRALIDQRLKPLELTQTHWVTLHNIHQLPPHQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIMRCTCANDRRAKRIKLTKAAEPVIQQVEHVIDATRDDILAGISKREVEQLITLIARLEKNIAELQKKSE
>NZ_CP019706.1|WP_085071810.1|3806840_3807362_-|superoxide-dismutase
MKYHGLAALTLLVCGYAQAASEEVTLHSVTKEGVGAVVGTVKIDETAYGLTFTPNLKQLPPGIHGFHVHAKGSCEPATTDGKTVPAGAAGGHFDPQNSGSHLGPWGEGHLGDLPALYVNADGDATYPVLAPRLKKISDISGKALMVHAGGDNHSDHPQPLGGGGARYACGVIK
>NZ_CP019706.1|WP_085071811.1|3807453_3808350_-|aldo/keto-reductase-family-oxidoreductase
MTERVCIAPQGPEFSRLVMGYWRLMEWQMSAQQLTSFIEQHLALGITTVDHADIYGDYQCEAAFGAALRLQPSLRHQLELVTKCGIATTARPENALGHYITDGDHIIRSAETSLRHFSTDYLDLLLIHRPDPLMDADEVAEAFSALHQSGKVRHFGVSNFTPAQFALLQSRLPFTLATNQVEISPLCQDTLLDGTLDQCQQLRIKPMAWSCLGGGRLFSEDKFAPLRAELQAVAEETGAESPDQVVYAWIMRLPSAPLPVIGSGKIERVRAAQKASSLQLSRQQWFRIRKAALGYDVP
>NZ_CP019706.1|WP_167373305.1|3808420_3808660_-|DUF1289-domain-containing-protein
MAEQLEFFPVPSPCRGICQSDERGYCRGCLRSREERFNWMKYSDARKREVLRLCRQRWLRLHRSEKPASPEEPQQPSLF
>NZ_CP019706.1|WP_085071813.1|3808863_3810498_+|phosphoethanolamine-transferase-EptA
MQMLKKIRCNDSVFLIGCTLFFTFILNAQFIIRAAERTPLLRLHDYLFLATIPVVLFCAFMVVFNLLALPWIRKPLLIILLLCGAAANYFMYSFGTVIDTNMVQNVFETDLQEASALLSLRYVLWLLVLGVIPALVISATRITRTRPWWFTLARRALWCVGSILVILLIAALMYKDYASLFRNNKGLVKMVTPVNVVSGVIHYADDRWLQGNQDLVRIGQDAHKGPLVKAAGKKTLVIFVLGETARAENFSLGGYSRETNPKLKQQQVIYYPHASSCGTETAISVPCMFSGMTRSQYNANLARHQEGLMDVLAHAGVNVMWRENDGGCKGACNRIPHTDMTLWKLTDICHNDYCLDEVLLHRLSHYIDSLKDDSVIVLHQMGSHGPAYYLRYPPAMRQFTPTCDSKQIQDCDHQALVNTYDNSLLYTDAMLSDTIDLLKSYQDRFNVALIYLSDHGESLGEHGMYLHGTPYLFAPSQQTHIPFLLWLSSDYARTYGVDESCLRQHAQQDEVSQDNVFHTLLGMVNIQTALYQPRLDLLKVCQAH
>NZ_CP019706.1|WP_085071814.1|3810536_3811127_+|TetR/AcrR-family-transcriptional-regulator
MSKSIRHDTREQLLAIGEQLCLQRGFTGMGLNELLSQASVPKGSFYHYFRSKEAFGVAMLERYFSAVRRSMLIWFDSPVPPRQRLLDYYRQAEQRFHETGHIENCLAVKISAEVCDLSEEMRVALEQGAAAQIAILTMTLRTAVLQGEVRLFCPPEAMAQTLYSLWLGASLQSKIGRDGSALTHAFQAILQLLPES
>NZ_CP019706.1|WP_085071815.1|3811251_3811659_+|lactoylglutathione-lyase
MRLLHTMLRVGDMQRSLDFYTRVLGMRLLRESENQEYKYNLAFVGYTDESEGAVIELTYNWGVDQYDLGNAYGHIALGVDDVAATCERIRQAGGKVTREAGPVKGGSTIIAFVEDPDGYKIELIENQHAGHGLGN
>NZ_CP019706.1|WP_085071816.1|3811760_3812456_+|ribonuclease-T
MSESKQLNALSDRFRGFYPVVIDIESAGFNAKTDALLEIAAVTLKMDEDGWLQLDQTLHFHVEPFEGAILHPEALAFNGIDPDNPLRGAVNEYDALHAIFKQVRKGMKDQGCNRAIVVAHNANFDHSFMMAAAERTALKRNPFHPFATFDTAALSGLVVGQTVLAKACKAAGIAFDASQAHSALYDTERTAELFCELVNRWKRLGGWPPLPVADEQPVDEQPVDAEISDSE
>NZ_CP019706.1|WP_085071817.1|3812520_3812853_-|Grx4-family-monothiol-glutaredoxin
MSTVEKIQRQIAENPILLYMKGSPKLPSCGFSAQTVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMFQRGELQTLIKETAEKYKEAE
>NZ_CP019706.1|WP_085071818.1|3813214_3814033_+|C40-family-peptidase
MRLLITLFMLAMAQLFFNVAHASPQAPVKASQHKVDKKAARDDDRRKRRTVKTISKKNRTASVEKNKVKKKSKPAAVAATSVKKSRASVKTTSVKKSSLKKISSKKGLQRYGRQRGDKKTAAARRGPLEMSKAHRERYQKARETAMNKLMSQLGKPYLWGGTSPHTGFDCSGLVWYAYKDVVKFKIPRTANEMYHLRDAAPINREALEKGDLVFFRINNRGAADHVGVYLGNGRFIQSPRTGKDIQISQLSDDYWQRHYVGARRVMTPRTIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019706_2	2.1\|3146321\|35\|NZ_CP019706\|CRISPRCasFinder	3146321-3146355	35	NZ_CP019706.1	3147867-3147901	0	1.0

1. spacer 2.1|3146321|35|NZ_CP019706|CRISPRCasFinder matches to position: 3147867-3147901, mismatch: 0, identity: 1.0

gcgacgcctaatgcaattctggcaatcccggaaaa	CRISPR spacer
gcgacgcctaatgcaattctggcaatcccggaaaa	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

976230 : 1020176

Macacine_betaherpesvirus(28.57%)

protease,transposase,integrase

attL 1011655:1011669|attR 1021491:1021505

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085068190.1\|976230_979356_-\|protease	autotransporter serine protease	NA	NA	NA	NA
WP_085068191.1\|980405_981839_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_085068192.1\|981845_983306_-	PTS cellobiose/arbutin/salicin transporter subunit IIBC	NA	NA	NA	NA
WP_085068193.1\|984251_985268_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_085068194.1\|985381_985954_+	beta-carotene hydroxylase	NA	NA	NA	NA
WP_085068195.1\|985868_986819_-	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_085068196.1\|986818_988297_-	phytoene desaturase	NA	NA	NA	NA
WP_085068197.1\|988289_989468_-	lycopene beta-cyclase CrtY	NA	NA	NA	NA
WP_085068198.1\|989464_990730_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_085068199.1\|990726_991755_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_085068200.1\|991754_992672_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	9.6e-08	25.0
WP_085068201.1\|992903_993455_-	YtfJ family protein	NA	NA	NA	NA
WP_085068202.1\|993634_994648_+	HNH endonuclease	NA	NA	NA	NA
WP_085068203.1\|994647_995229_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_085068204.1\|996156_996480_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_085068205.1\|996463_996823_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_085068206.1\|997580_999941_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.1e-28	24.5
WP_085072229.1\|1000573_1001260_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_085068207.1\|1001256_1004505_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_157130148.1\|1007122_1008290_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.4e-165	87.9
WP_157130149.1\|1009166_1010277_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-07	26.2
WP_085068209.1\|1010436_1010736_-	hypothetical protein	NA	NA	NA	NA
WP_085068210.1\|1010743_1011568_-	hypothetical protein	NA	NA	NA	NA
1011655:1011669	attL	NA	NA	NA	NA
WP_085068211.1\|1012035_1012986_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_004186793.1\|1012978_1013374_-	hypothetical protein	NA	NA	NA	NA
WP_085068212.1\|1013448_1014261_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_157130150.1\|1014290_1015411_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-48	41.2
WP_085068215.1\|1015460_1015694_-	AAA family ATPase	NA	NA	NA	NA
WP_157130138.1\|1016501_1017613_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-07	26.2
WP_085068217.1\|1017920_1018868_-	hypothetical protein	NA	NA	NA	NA
WP_085068218.1\|1018919_1020176_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	4.3e-83	42.4
1021491:1021505	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2477032 : 2486988

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085070440.1\|2477032_2477794_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.1e-64	51.6
WP_085070442.1\|2477787_2478414_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.1e-34	48.5
WP_085070444.1\|2478577_2479654_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.3e-06	36.4
WP_085070446.1\|2479704_2480697_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.6e-32	37.6
WP_085070447.1\|2480793_2483337_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.7e-28	21.8
WP_085070449.1\|2483645_2483987_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_085070451.1\|2484044_2484932_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_085070452.1\|2485322_2485823_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	6.0e-28	49.4
WP_085070454.1\|2485917_2486988_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	5.8e-113	62.2

DBSCAN-SWA_3

3244134 : 3288214

Salmonella_phage(16.36%)

holin,tail,protease,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085071305.1\|3244134_3245427_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	5.3e-129	53.8
WP_085071306.1\|3245459_3245708_-	DUF1233 family excisionase	S4TND0	Salmonella_phage	7.3e-19	55.6
WP_085071307.1\|3245788_3246133_-	hypothetical protein	Q7Y3W5	Yersinia_phage	2.3e-39	67.3
WP_085071308.1\|3246183_3246513_-	hypothetical protein	NA	NA	NA	NA
WP_085071309.1\|3246509_3246719_-	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	9.8e-17	62.1
WP_085071310.1\|3246721_3246985_-	DUF5405 family protein	E5AGD5	Erwinia_phage	1.6e-19	50.0
WP_085071311.1\|3247046_3247340_-	hypothetical protein	NA	NA	NA	NA
WP_085071312.1\|3247336_3247582_-	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	4.5e-29	79.5
WP_085071313.1\|3247578_3247767_-	hypothetical protein	NA	NA	NA	NA
WP_085071314.1\|3247796_3248066_-	hypothetical protein	NA	NA	NA	NA
WP_085071315.1\|3248294_3248702_-	hypothetical protein	NA	NA	NA	NA
WP_085071316.1\|3248833_3249034_-	hypothetical protein	NA	NA	NA	NA
WP_085071317.1\|3249036_3249339_-	hypothetical protein	NA	NA	NA	NA
WP_085071318.1\|3249362_3249953_-	DUF669 domain-containing protein	G9L666	Escherichia_phage	1.4e-63	64.5
WP_085071319.1\|3249949_3250630_-	AAA family ATPase	K7PMI2	Enterobacteria_phage	1.4e-109	85.0
WP_157130186.1\|3250611_3250788_-	hypothetical protein	NA	NA	NA	NA
WP_085071320.1\|3250774_3250975_-	DUF5444 family protein	NA	NA	NA	NA
WP_085071321.1\|3250977_3251106_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q9AZ26	Salmonella_phage	2.0e-09	74.4
WP_085071322.1\|3251252_3251435_-	hypothetical protein	A0A1W6DXZ7	Salmonella_phage	9.1e-11	51.7
WP_085071323.1\|3251455_3251662_-	hypothetical protein	A0A1B0VMC0	Pseudomonas_phage	1.5e-06	44.2
WP_085071324.1\|3251812_3252256_-	hypothetical protein	E5AGE5	Erwinia_phage	1.5e-51	66.7
WP_157130187.1\|3252340_3252670_-	hypothetical protein	A0A0N7C217	Escherichia_phage	9.7e-11	55.9
WP_085071325.1\|3252988_3253309_-	hypothetical protein	M1PRT9	Cellulophaga_phage	2.2e-23	58.4
WP_085071326.1\|3253404_3253779_-	hypothetical protein	NA	NA	NA	NA
WP_085071327.1\|3253775_3254399_-	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	1.4e-18	40.4
WP_085072337.1\|3254757_3255417_-	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	5.4e-69	57.9
WP_085071328.1\|3255522_3255732_+	helix-turn-helix transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.1e-15	56.5
WP_085071329.1\|3255870_3256209_+	hypothetical protein	A0A1W6JNY4	Morganella_phage	1.5e-22	56.1
WP_157130188.1\|3256242_3256386_+	hypothetical protein	NA	NA	NA	NA
WP_085071330.1\|3256382_3257285_+	DNA replication protein	Q37929	Escherichia_phage	4.0e-67	47.2
WP_085071331.1\|3257274_3258675_+	AAA family ATPase	Q716D2	Shigella_phage	1.2e-166	62.8
WP_085071332.1\|3258674_3259037_+	DUF2591 family protein	G8EYI2	Enterobacteria_phage	6.4e-24	53.9
WP_157130189.1\|3259036_3259210_+	hypothetical protein	NA	NA	NA	NA
WP_085071333.1\|3259211_3259403_+	hypothetical protein	NA	NA	NA	NA
WP_085071334.1\|3259389_3259575_+	hypothetical protein	NA	NA	NA	NA
WP_085071335.1\|3259546_3259981_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	4.6e-61	82.3
WP_085071336.1\|3259977_3260565_+	S-adenosylmethionine-binding protein	Q858E6	Salmonella_phage	7.4e-86	78.1
WP_085071337.1\|3260561_3260774_+	hypothetical protein	C6ZR59	Salmonella_phage	5.4e-07	45.0
WP_085071338.1\|3260931_3261162_+	DUF3310 domain-containing protein	A0A0A6Z5B6	Enterobacter_phage	3.5e-23	71.0
WP_157130190.1\|3261146_3261317_+	NinE family protein	Q5G8S3	Enterobacteria_phage	7.9e-09	58.9
WP_085071339.1\|3261289_3261457_+	hypothetical protein	NA	NA	NA	NA
WP_085071340.1\|3261449_3261743_+	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	3.5e-44	79.4
WP_085071341.1\|3261739_3262102_+	RusA family crossover junction endodeoxyribonuclease	A0A2H4J472	uncultured_Caudovirales_phage	4.1e-55	88.1
WP_085071342.1\|3262098_3262341_+	hypothetical protein	A0A1V0E5R3	Salmonella_phage	4.1e-27	72.5
WP_085071343.1\|3262337_3262544_+	hypothetical protein	M9NZE6	Enterobacteria_phage	1.5e-30	85.3
WP_167373295.1\|3262540_3262675_+	YlcG family protein	A0A2H4JF91	uncultured_Caudovirales_phage	7.9e-12	82.1
WP_085071344.1\|3262655_3263183_+	antiterminator	A0A1R3Y5U9	Salmonella_virus	4.0e-67	79.6
WP_085072338.1\|3263390_3263744_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_085071345.1\|3263727_3264360_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	3.7e-43	47.1
WP_085071346.1\|3264347_3264785_+	Rz lytic protein	NA	NA	NA	NA
WP_085071347.1\|3265212_3265710_+	DNA-binding protein	Q9AZ05	Salmonella_phage	5.8e-84	90.2
WP_085071348.1\|3266007_3266217_+	hypothetical protein	NA	NA	NA	NA
WP_085072339.1\|3266249_3266447_-	hypothetical protein	NA	NA	NA	NA
WP_085071349.1\|3266524_3266959_+	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	2.2e-47	73.9
WP_085071350.1\|3266955_3268185_+\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	2.0e-194	90.6
WP_085071351.1\|3268184_3269543_+	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	7.8e-22	24.7
WP_085071352.1\|3269484_3270336_+\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	2.9e-30	33.5
WP_085071353.1\|3270339_3271485_+	DUF2213 domain-containing protein	A0A2H4J159	uncultured_Caudovirales_phage	2.4e-16	38.1
WP_085071354.1\|3271487_3271979_+	hypothetical protein	NA	NA	NA	NA
WP_085071355.1\|3271982_3272948_+	DUF2184 domain-containing protein	NA	NA	NA	NA
WP_085071356.1\|3272962_3273325_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	2.7e-14	43.1
WP_085071357.1\|3273334_3273802_+	hypothetical protein	A0A2I7QS63	Vibrio_phage	3.7e-32	49.0
WP_085071358.1\|3273794_3274151_+	hypothetical protein	NA	NA	NA	NA
WP_085071359.1\|3274147_3274633_+	hypothetical protein	A0A2I7QS82	Vibrio_phage	1.6e-38	55.9
WP_085071360.1\|3274636_3276139_+	DUF3383 family protein	A0A2P9HXQ6	Yersinia_phage	2.4e-157	58.5
WP_085071361.1\|3276149_3276581_+	hypothetical protein	A0A2P9HXY3	Yersinia_phage	1.1e-30	51.0
WP_085071362.1\|3276584_3276998_+	hypothetical protein	A0A2P9HXM8	Yersinia_phage	7.4e-24	44.3
WP_167373273.1\|3277012_3277165_+	hypothetical protein	A0A2P9HXJ0	Yersinia_phage	4.9e-10	66.0
WP_085071363.1\|3277151_3278741_+\|tail	phage tail tape measure protein	A0A2I7QS75	Vibrio_phage	2.1e-82	46.1
WP_085071364.1\|3278740_3279547_+	hypothetical protein	A0A2P9HXI6	Yersinia_phage	2.5e-52	44.4
WP_085071365.1\|3279556_3279892_+	hypothetical protein	A0A2I7RBP0	Vibrio_phage	6.6e-31	55.6
WP_085071366.1\|3279891_3280842_+	hypothetical protein	A0A2P9HXK2	Yersinia_phage	1.7e-71	46.8
WP_085071367.1\|3280932_3281352_+	PH domain-containing protein	NA	NA	NA	NA
WP_085071368.1\|3281982_3282363_+	hypothetical protein	A0A2H5BFY4	Vibrio_phage	6.8e-24	56.0
WP_085071369.1\|3282346_3283525_+	hypothetical protein	A0A2I7QS90	Vibrio_phage	1.1e-99	47.8
WP_085071370.1\|3283524_3284247_+	DUF2612 domain-containing protein	A0A2P9HXZ0	Yersinia_phage	4.2e-67	51.9
WP_085071371.1\|3284239_3285313_+	hypothetical protein	A0A2P9HXN3	Yersinia_phage	2.0e-25	46.0
WP_085071372.1\|3285313_3285739_+	hypothetical protein	NA	NA	NA	NA
WP_085071373.1\|3285741_3286776_-	hypothetical protein	NA	NA	NA	NA
WP_085071374.1\|3286783_3288214_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	3.6e-86	38.6

DBSCAN-SWA_4

3842267 : 3855672

Tupanvirus(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085071840.1\|3842267_3843707_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.1e-58	38.6
WP_085071841.1\|3843783_3844524_-	EAL domain-containing protein	NA	NA	NA	NA
WP_085071842.1\|3844906_3845368_-	endopeptidase	A0A1V0DZX6	Clostridioides_phage	2.2e-13	36.9
WP_085071843.1\|3845438_3846194_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	2.2e-05	28.3
WP_085071844.1\|3846193_3846739_-	glutathione peroxidase	NA	NA	NA	NA
WP_085071845.1\|3846772_3847756_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-14	27.0
WP_085072363.1\|3847857_3848289_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_038626354.1\|3848506_3848806_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	9.4e-13	38.9
WP_085071846.1\|3848810_3851198_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.1e-08	28.1
WP_085071847.1\|3851212_3852196_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	5.8e-35	39.3
WP_157130250.1\|3852342_3852384_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_038626360.1\|3852506_3852863_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_038626362.1\|3852903_3853101_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_038626364.1\|3853197_3853740_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	31.3
WP_085071848.1\|3853743_3855672_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.6e-127	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019707

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6104 : 13268

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085072391.1\|6104_6362_-	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.0e-11	48.7
WP_167373307.1\|6402_6549_-	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	2.3e-09	56.2
WP_085072393.1\|7705_8671_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.9e-78	52.3
WP_085072394.1\|8678_9872_-	ParA family protein	A0A077SL49	Escherichia_phage	2.9e-182	80.8
WP_085072395.1\|10687_11710_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	6.7e-135	75.2
WP_085072396.1\|12350_13268_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.6e-71	51.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019706

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019707

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection