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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020814 Alkalihalobacillus krulwichiae strain AM31D chromosome, complete genome 5 crisprs RT,PrimPol,cas3,csa3,DEDDh,DinG 0 4 7 0

Results visualization

1. NZ_CP020814
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020814_1 2116239-2116339 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020814_2 2880317-2880389 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020814_3 3444754-3444825 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020814_4 3909620-3909958 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020814_5 3963307-3963385 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 101581-101604 2 0.917
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MT774390 CrAssphage cr85_1, complete genome 14423-14446 2 0.917
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MT521993 Gordonia phage RedWattleHog, complete genome 113452-113475 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN586040 Gordonia phage Stormageddon, complete genome 114417-114440 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN562221 Photobacterium phage PDCC-1, complete genome 166082-166105 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MK368614 Vibrio phage 2 TSL-2019, complete genome 72553-72576 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN693880 Marine virus AFVG_250M607, complete genome 15773-15796 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 KX879627 Campylobacter phage vB_CjeM_Los1, complete genome 21923-21946 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NC_042112 Campylobacter phage CP81, complete genome 106238-106261 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 KP703175 ANMV-1 virus from uncultured archaea, genomic sequence 24612-24635 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MH494197 Escherichia phage CMSTMSU, complete genome 353649-353672 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 KF148616 Campylobacter phage CP8, complete genome 22448-22471 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NC_049953 Escherichia phage Lambda_ev099 genome assembly, chromosome: 1 10350-10373 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NC_016562 Campylobacter phage CPX, complete genome 22214-22237 3 0.875
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NC_048702 Erwinia phage vB_EamM-Bue1, complete genome 56698-56721 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 NZ_LN997849 Magnetospirillum sp. XM-1 isolate XM1 plasmid II, complete sequence 165075-165098 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694642 Marine virus AFVG_250M1139, complete genome 34274-34297 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694501 Marine virus AFVG_250M1038, complete genome 7339-7362 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694309 Marine virus AFVG_250M1141, complete genome 6827-6850 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694135 Marine virus AFVG_250M1039, complete genome 7336-7359 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694086 Marine virus AFVG_250M1072, complete genome 33856-33879 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694450 Marine virus AFVG_250M1140, complete genome 34041-34064 4 0.833
NZ_CP020814_3 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder 3444778-3444801 24 MN694438 Marine virus AFVG_250M1133, complete genome 6631-6654 4 0.833
NZ_CP020814_4 4.3|3909751|25|NZ_CP020814|CRT 3909751-3909775 25 NZ_CP021923 Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-1 58205-58229 4 0.84
NZ_CP020814_4 4.3|3909751|25|NZ_CP020814|CRT 3909751-3909775 25 NZ_CP021511 Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-2, complete sequence 99175-99199 4 0.84
NZ_CP020814_4 4.3|3909751|25|NZ_CP020814|CRT 3909751-3909775 25 NC_013211 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, complete sequence 148688-148712 4 0.84
NZ_CP020814_4 4.2|3909699|25|NZ_CP020814|CRT 3909699-3909723 25 NC_009929 Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence 119840-119864 5 0.8
NZ_CP020814_4 4.5|3909855|25|NZ_CP020814|CRT 3909855-3909879 25 NC_009929 Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence 119840-119864 5 0.8

1. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 2, identity: 0.917

acagaagaagaacctgaagatgat	CRISPR spacer
agagaagaaaaacctgaagatgat	Protospacer
* *******.**************

2. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MT774390 (CrAssphage cr85_1, complete genome) position: , mismatch: 2, identity: 0.917

acagaagaagaacctgaagatgat	CRISPR spacer
acagaagaagtatctgaagatgat	Protospacer
********** *.***********

3. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MT521993 (Gordonia phage RedWattleHog, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
cgagaaggagaacctgaagatgat	Protospacer
  *****.****************

4. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN586040 (Gordonia phage Stormageddon, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
cgagaaggagaacctgaagatgat	Protospacer
  *****.****************

5. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN562221 (Photobacterium phage PDCC-1, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
gtagaagaagatcctgaagatgat	Protospacer
..********* ************

6. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MK368614 (Vibrio phage 2 TSL-2019, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
gtagaagaagatcctgaagatgat	Protospacer
..********* ************

7. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN693880 (Marine virus AFVG_250M607, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
acagaagaagaacctgttgatgag	Protospacer
****************  ***** 

8. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to KX879627 (Campylobacter phage vB_CjeM_Los1, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
attgaagatgaacctgaagatgat	Protospacer
*. ***** ***************

9. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
attgaagatgaacctgaagatgat	Protospacer
*. ***** ***************

10. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to KP703175 (ANMV-1 virus from uncultured archaea, genomic sequence) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
aaggaagaagagcctgaagatgat	Protospacer
* .********.************

11. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
aaagaagaagaacctgaagataaa	Protospacer
* *******************.* 

12. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
attgaagatgaacctgaagatgat	Protospacer
*. ***** ***************

13. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NC_049953 (Escherichia phage Lambda_ev099 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
gctgacgaagaacctgaagatgat	Protospacer
.* ** ******************

14. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 3, identity: 0.875

acagaagaagaacctgaagatgat	CRISPR spacer
attgaagatgaacctgaagatgat	Protospacer
*. ***** ***************

15. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NC_048702 (Erwinia phage vB_EamM-Bue1, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
caggaagaagaacctgaagatgag	Protospacer
  .******************** 

16. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to NZ_LN997849 (Magnetospirillum sp. XM-1 isolate XM1 plasmid II, complete sequence) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
ctatcagaagaacctgaagatgat	Protospacer
 .*  *******************

17. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694642 (Marine virus AFVG_250M1139, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

18. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694501 (Marine virus AFVG_250M1038, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

19. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694309 (Marine virus AFVG_250M1141, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

20. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694135 (Marine virus AFVG_250M1039, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

21. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694086 (Marine virus AFVG_250M1072, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

22. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694450 (Marine virus AFVG_250M1140, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

23. spacer 3.1|3444778|24|NZ_CP020814|CRISPRCasFinder matches to MN694438 (Marine virus AFVG_250M1133, complete genome) position: , mismatch: 4, identity: 0.833

acagaagaagaacctgaagatgat	CRISPR spacer
gaagaagaagaaccagaagatgag	Protospacer
. ************ ******** 

24. spacer 4.3|3909751|25|NZ_CP020814|CRT matches to NZ_CP021923 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-1) position: , mismatch: 4, identity: 0.84

gatcctctccccttttggctcggac	CRISPR spacer
gatcctctcccagtttggctcggga	Protospacer
***********  **********. 

25. spacer 4.3|3909751|25|NZ_CP020814|CRT matches to NZ_CP021511 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 plasmid pAP1342-2, complete sequence) position: , mismatch: 4, identity: 0.84

gatcctctccccttttggctcggac	CRISPR spacer
gatcctctcccagtttggctcggga	Protospacer
***********  **********. 

26. spacer 4.3|3909751|25|NZ_CP020814|CRT matches to NC_013211 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, complete sequence) position: , mismatch: 4, identity: 0.84

gatcctctccccttttggctcggac	CRISPR spacer
gatcctctcccagtttggctcggga	Protospacer
***********  **********. 

27. spacer 4.2|3909699|25|NZ_CP020814|CRT matches to NC_009929 (Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence) position: , mismatch: 5, identity: 0.8

gatcctctcctcttttggctcggac	CRISPR spacer
ctagctctcctcttttggctgggac	Protospacer
    **************** ****

28. spacer 4.5|3909855|25|NZ_CP020814|CRT matches to NC_009929 (Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence) position: , mismatch: 5, identity: 0.8

gattctctcctcttttggctcggac	CRISPR spacer
ctagctctcctcttttggctgggac	Protospacer
    **************** ****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 341608 : 351387 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 379463 : 457253 110 Bacillus_phage(50.0%) portal,capsid,terminase,integrase,tRNA,tail,holin attL 394306:394324|attR 467102:467120
DBSCAN-SWA_3 658839 : 666733 11 Staphylococcus_phage(33.33%) portal,capsid,head,integrase,tail attL 658657:658708|attR 674541:674592
DBSCAN-SWA_4 2373493 : 2381867 9 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_5 2437653 : 2464291 36 Bacillus_phage(42.86%) portal,capsid,terminase,head,integrase,coat,tail attL 2436159:2436173|attR 2445965:2445979
DBSCAN-SWA_6 2943590 : 3016470 58 Bacillus_phage(27.27%) tRNA,protease,integrase,coat attL 2941796:2941810|attR 3017828:3017842
DBSCAN-SWA_7 3808327 : 3854491 70 Bacillus_phage(28.57%) portal,capsid,terminase,protease,head,integrase,tail,holin attL 3810358:3810374|attR 3849445:3849461
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage