CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015442	Leuconostoc mesenteroides subsp. mesenteroides strain BD1710 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh	0	7	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015442_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015442_1

394307-394409

Unclear

Consensus_repeat	Method
CCGACTTAGCTCAGTTGGTAGAGCAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP015442_1

>merge|NZ_CP015442|1|394307-394409|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCGCCGACGTAGCTCAGTTGGTAGAGCAC

>NZ_CP015442|1|1|394307-394409|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCAC	CTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCG
CCGACGTAGCTCAGTTGGTAGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015442.1\|WP_011679270.1\|400731_401199_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP015442.1\|WP_011679267.1\|397661_399110_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP015442.1\|WP_059442301.1\|383177_386717_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP015442.1\|WP_084014882.1\|405901_406450_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP015442.1\|WP_011679260.1\|387095_387494_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_CP015442.1\|WP_014324309.1\|401185_401596_+\|DUF3021-domain-containing-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP015442.1\|WP_084014884.1\|399229_400030_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP015442.1\|WP_010277907.1\|388817_389357_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP015442.1\|WP_084014883.1\|403852_405679_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP015442.1\|WP_011679263.1\|391595_392489_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP015442.1\|WP_004164715.1\|386732_387014_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP015442.1\|WP_059442303.1\|387524_388817_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP015442.1\|WP_059442306.1\|395902_396850_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_CP015442.1\|WP_011679265.1\|394533_395067_+\|rRNA-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|211334
NZ_CP015442.1\|WP_011679272.1\|401729_403820_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|376463
NZ_CP015442.1\|WP_004164706.1\|395137_395854_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP015442.1\|WP_084014885.1\|392576_394064_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP015442.1\|WP_010291225.1\|382610_383177_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP015442.1\|WP_011679258.1\|381840_382485_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341358
NZ_CP015442.1\|WP_011679262.1\|389384_391487_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520

Protein	Function_ID	Function_description	E-value
NZ_CP015442.1\|WP_011679270.1\|400731_401199_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	1.51406e-17
NZ_CP015442.1\|WP_011679267.1\|397661_399110_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.71168e-119
NZ_CP015442.1\|WP_059442301.1\|383177_386717_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP015442.1\|WP_084014882.1\|405901_406450_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.248e-09
NZ_CP015442.1\|WP_011679260.1\|387095_387494_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	1.77007e-05
NZ_CP015442.1\|WP_014324309.1\|401185_401596_+\|DUF3021-domain-containing-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	1.60212e-08
NZ_CP015442.1\|WP_084014884.1\|399229_400030_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.17925e-51
NZ_CP015442.1\|WP_010277907.1\|388817_389357_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.80407e-78
NZ_CP015442.1\|WP_084014883.1\|403852_405679_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.9681e-73
NZ_CP015442.1\|WP_011679263.1\|391595_392489_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	3.427e-101
NZ_CP015442.1\|WP_004164715.1\|386732_387014_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.99369e-29
NZ_CP015442.1\|WP_059442303.1\|387524_388817_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.26083e-74
NZ_CP015442.1\|WP_059442306.1\|395902_396850_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	2.75192e-127
NZ_CP015442.1\|WP_011679265.1\|394533_395067_+\|rRNA-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	1.68309e-102
NZ_CP015442.1\|WP_011679272.1\|401729_403820_+\|DNA-topoisomerase-III	gnl\|CDD\|376463	pfam01131, Topoisom_bac, DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.	4.73759e-69
NZ_CP015442.1\|WP_004164706.1\|395137_395854_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	9.18473e-131
NZ_CP015442.1\|WP_084014885.1\|392576_394064_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP015442.1\|WP_010291225.1\|382610_383177_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.28277e-94
NZ_CP015442.1\|WP_011679258.1\|381840_382485_-\|CBS-domain-containing-protein	gnl\|CDD\|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.94521e-07
NZ_CP015442.1\|WP_011679262.1\|389384_391487_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0

>NZ_CP015442.1|WP_084014885.1|392576_394064_+|lysine--tRNA-ligase
MAEEKALNDQMLARRQKLATIVSDLHLDPFGKRFERTAKAQELHNLYDASSLEELENAKHEVVIAGRMVAKRGAGKVIFADFRDVSGKIQVYARRDDLADNYPIIKRADLGDFLGIKGIMMKTEAGELTVLATELTHLSKALRPMPDKFHGISDVETRYRKRYLDLIANEDSFKKFQERSHIISAIRAYMDRNDFLEVETPILQTEAGGAAARPFITHHNALNIDMYMRIATELYLKRLIVGGMERVYEIGRIFRNEGMDPKHNPEFTTMESYAAYMDFTDVMDETEGIFKAAASVVSDDLKITYQGTEIDLGTKFARKHLVDLIKEQTGIDFWQEMSVEEAQKLADDNHVKYEKYWGVGHIINAFFEEFVEDTLVKPTFVYGHPVEVSPLAKKNTDDPRFTDRFELFIMGSEYANAFTELNDPIDQRARFEAQAAERENGNDEAEGIDEDFIEALEYGMPPTGGLGVGIDRLVMLLTDSDTIRDVVLFPTMRPE
>NZ_CP015442.1|WP_011679263.1|391595_392489_+|Hsp33-family-molecular-chaperone-HslO
MADQFIKAITKNKYFRTFAVNGTNLVHQAAQIHETSRIAAVVLGRGLLATTLTAQAVLKGEETLSTKINGRGPIGNVVVESDAKGSVRGYVTNPNLETLINEAGQLDVAKAVGKNGFLQVTKFAPYSDPYIGQSQLVSGEIGDDFTYYLAQSEQTPSVIGVSVYMNSDDTVAGAGGFLVQALPDATDEAIDQLELALKNMKPLSEMIQERYTPLEVLEEIFGKGEVEILQTAGIGLAAEPSKDAYAKMLLTLPASEIQAMIKEDHGAEIVGKFSGKRYFFTEEQLSEILKQIEKNNE
>NZ_CP015442.1|WP_011679262.1|389384_391487_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNNKGGFLRSSVFYIFIFLAVVGMVYGLFGNDKTTTKTITSSEFIKALNDKELKSVTVQPGNSIYNVTGTYKKAQTATKDKGLSLFQPTQKVTKFTSTLLPNDASLKSVTDAATKTKTELVTKQAENSGFWLNLLVSLVPVLLIVAVFYLMMNQAGGGKGGQGGMMSFGKSKAKPSDPKDNKVRFADVAGAEEEKQELVEVVEFLKAPKKFVNLGARIPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEMFVGVGASRVRDLFENAKKSAPAIIFIDEIDAVGRRRGTGMGGGNDEREQTLNQILIEMDGFEGSEGVIILASTNRSDVLDPALLRSGRFDRKILVGAPDVKGREAILNVHAKNKPLADNVDLKAIAQQTPGYVGADLENLLNEAALLAARRNKSKVDAADIDEAEDRIFQGPAKTNHNMSESERRTTAYHEAGHALVGLVRSEASVVRKVTIVPRGRIGGYALMTPKNDRYNLKYSEAKEQLAGLMGGRASEIFMFNEASSGASNDFQQATGLARQMVTAFGMSDKLGMVQLEGNASVGYADQAGNRAYSEETARLIDEEVRRLAREAFDDAIAILRDNKDKLTAIAEALLEVETLDEKQIKDIYLTGTFTRKDIQDDTELAKAKSFEEAKAAADAKDSQAEQRFEKQDEEKSSDDHSESKNEDTDSTDKSETDDNNTENK
>NZ_CP015442.1|WP_010277907.1|388817_389357_+|hypoxanthine-phosphoribosyltransferase
MDNDIQEVLYDQESIQKAAERLGKQITQDYAGSTPLFLSVLKGAYLWTADLLREVDLYAELEFIKISSYHGGVSSSDEITLVTDVRSDVRGRDVIILEDIVDTGQSLLFLKELLAKRGAKSIKVATLLDKIEGRKVEVDADYAGFNVRNEFVVGYGLDYEEHYRNLPYVGILKKEVYTK
>NZ_CP015442.1|WP_059442303.1|387524_388817_+|tRNA-lysidine(34)-synthetase-TilS
MTEKILQTIQQYNWPETVIVAVSGGVDSVVLVHALSKTKANLVIAHVNYRLREESDEDAAFVRQLATQTGAIFEEQVWQHIPDHAVEKAARQFRYDFFEELAQKYHTNTIAVAHHADDQAETVLLKMIRGGQLQQMGGMQTKNHKVIRPFLSITKQELITYAQDNQLGWRQDKTNFDVDYTPRNLLRNDVLPKLTTINQRAVRHINNMAAQILQQQRLIDNQAKIYANDIQDWQKIPTLWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKPNGKIALADNFEFIKNYQKISIQKQQNMAQVLTPVMLKLNQWHSFAKTTFMWTDNVPMNGQSFIKFQLTRSLPYLSLRPAKASDKIALINGHKNLRRLAIDEKLTPQERTMMWVLATADDEVIAVHLRSNQWRVNADFAVKENTQPYWLVCQIEET
>NZ_CP015442.1|WP_011679260.1|387095_387494_+|septum-formation-initiator-family-protein
MAGNFKRRQSNITPLNPAIAREIKKSERANSEAAKHYRKAHARREKKILLFGGLIAIIFVVQLLIGQVKLHAANQELTNTQDRLEKVQKTNTDLTADTKRLKDATYLQQLLRDKYGYSKQGELVYNLPSDNN
>NZ_CP015442.1|WP_004164715.1|386732_387014_+|RNA-binding-S4-domain-containing-protein
MRLDKYLKISRLIKRRTVAKEIADQGRISINGKVAKSSSDVSTNDELEVRFGNKTLTVKVLKIVETTKKEESADMYEVISEKFQQDFRKIGDE
>NZ_CP015442.1|WP_059442301.1|383177_386717_+|transcription-repair-coupling-factor
MTLIDFLSDTVTIKKLNEQATVGSAQLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSLLEDLVYNFPAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVTSLAGAERLVPKKQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQTPGEFAHRGSIVDVYPITFDDPIRLDFFDDELDQLKSFDVATQKSTTSFDEINIEPATDFIVSEHQYDQAKLAIESAFSDYRTNLSGVDKKHATDGFAPTQYMLNERERGSVLVPYAPFFFDGQTTLLDYFPTDSLIIIDEYTRLMETRLQQMTRDQEWIEQQIEAYQLLPKQTWRTEITDLLASNQHATIYLANFQRGLNRIKFTNVEEVTTRPANQYYGQIPALKNDLIYAQESGITMVLLIPDAKRRANFSRSLSELEVPVTETRDIVKNQVQIMPGELSAGFEWPKLHLTVLTTHELFTQAKHSAPRTRKIANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTIAYQQNAKIFIPVTQLNLIQKYVGASDVAKKPKLNKLGGSEWAKTKRQVAAKIEDIADDLLELYAKREAQQGYVFPPDDHAQIKFDDSFGYPETPDQIRSIEEIKVDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHSGKQVAFLAPTTILVQQHYETMLARFSDFPEIKIGVLSRFQTPTQNKMIIEQLQNHEIDVVVGTHRLLSKDVDFSDLGLLIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGLAQLYQLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGAGDLLGKQQHGFIDSVGYDMYTQMLKDTVAQKQGKQVTTTQPETDAELILGVLAYLPDEYVSDNAQKIELYSRIRQARTDAEFEDIESDMLDRFGEMPDEVARLLLVGQIKQLADQSQITNIRRQRKQLIMTFNETATKNLAGEAIFETMVDVPLKAAVRTEEGNLQVIFTVNDVAESSIWLNILRNFLLVIIDKLSAKTLNELHH
>NZ_CP015442.1|WP_010291225.1|382610_383177_+|aminoacyl-tRNA-hydrolase
MKFIFGLGNIGAEYDQTRHNIGFMAVDAFATANHMSFSPSKQFALVAKTIIGGESVMLVKPTTYMNDSGKAVRAILDYYDGDVDDVLVLVDDMDLPFGKMRFRAKGSAGGHNGLKSIMTHTGSQTFLRLKFGLGHPVHEQNVVVNYVLGKFTAAEKPDIDAMLDRSTQAIADWIQGATAPELSNRYNG
>NZ_CP015442.1|WP_011679258.1|381840_382485_-|CBS-domain-containing-protein
MFQKSLVIPKSELTTVTENATIQEVYDIFNDPENAHTRTMPILDESGKLFRGNVYKQHVFEHVAKNGNMNLPATAIMRNSTKFIYTNSKFYEVFFAIRDLPFIAVLDENHQFYGIFTHDALMDLLSQSWSVRSGGVAIAISTHNTQGDLSKISKIITRYSNIESLLTIQSELKPLTVLFTLPLQEDSEQLEKLIKRLEKKGYHVSSVENLNRFR
>NZ_CP015442.1|WP_011679265.1|394533_395067_+|rRNA-large-subunit-pseudouridine-synthase-E
MIVLFNKPYNVLTKFTDAEGRPTLADYIDIPRVYAAGRLDMDSEGLLLLTDSGKLNHELTDPDNKAYKTYVVQVEGVPTKSQLKQLEQGVALKDGLTLPAKVKRIPYPKWLWEREKPIRIRKNQPTSFIQLKIKEGRNRQVRRMTAAVGIPTLRLIRTHIGEYHIADLKPGQYRIVK
>NZ_CP015442.1|WP_004164706.1|395137_395854_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWENIKMKKAQTDGAAAKVNSKYGIEIYAAAKQGGSPDPEANSTLKFVIERAKQAQVPKHVIERAIEKAKGSGDETFIEGRYEGFGPNGSLIIVDTLTSNVNRTATNVRTAFNKNGGTYGAAGSVSYLFDETGVIVFEGEDADATLETLLDAEVDVRDAEQQDDHIVVYTEPTALHQAIAALRESGVSDFSTTEISMLPQSEMTLAGEDLEIFEKLIDVLESDDDVQKVYHNVEL
>NZ_CP015442.1|WP_059442306.1|395902_396850_-|ferrochelatase
MNKKGLLLVNLGTPDSPHPDDVKAYLKEFLSDTNVIQMPRLLWQPILRGKILPKRSFKSAELYQKIWRKDGSPLMVYAKKQVEQVQQLQPNWIVRCAMTYRKPNIAETLKEMRLAGADDIVVLPLFPQYSVTSTQSVIDQVHKADKNINIVKSFYNDEAYLDLLARDIREAWAKNDYDRLIISYHGVPESYVRRGDPYVDHCTATTQGVLERVGPLTPDNTHQVFQSRFGPTEWVKPYLSDTLMSLPSHGIKRVLVATPAFVADCLETIEEIHVENHDIFKQAGGEIFDVVQPFNEHIDFSKYIASLANRHFAQN
>NZ_CP015442.1|WP_011679267.1|397661_399110_+|NCS2-family-permease
MEKLFQLKENKTTVRREIIAGITTFVSMAYIFFLNPQILGQAGVPTQAVFLAAILVAVFGTLFMGLFANVPFALAPGIGMQAYFTYTIVFGFGFTWQQALAIVFLVGVVDIVITLTHGRRAIVKGIPTELKAAIGGGIGLFVTYIGLKNAGFINFIVDPSNIMTLNGKPFTGEVHGAVNSILANGGVTPELTKFNNASTLLALIGFVILVVLVMRKVPGAFLISLIVTTLIGIPMGVTNTHIGAGTSVSHAFGELGQVFGQSLGAQGLGSLFNNWHHASLALVTIFAMGLTGLFDAIGTLIGIGNQTGIFSKEDQKSFESSNGFNSKMDRALVVDTFTTAFAGIVGTSNTTTFIESASGVAAGARTGLANVVTAAGFALMILFAPLVGVVPTAATSPLLILVGIMMMGEFKKISWESLEVALPAFFTSVFMAFSYSISYGIAAGFIFFIIVKFALGKFKEVSPVLLIVSAFFLLNFAVLAFM
>NZ_CP015442.1|WP_084014884.1|399229_400030_+|ABC-transporter-ATP-binding-protein
MLNIKNLSVSYGRKVALTVPKLSINKGEIIGVMGKSGSGKSTLVNSCLGLIPFKGRVRIDTDDVGILMQEQHYVDTMTNQKMIEGMLNTRIKRDKKLTELIDFFDFSDQLSLHFKNLSGGQKQRMSLIMVLYQEPELLFLDEMTTGLDFESRQALISQLKIYFKQHQTTILMVTHYAQEIEALADKLLVIHDGQVKAFDEPKNLFKQYIGYSAFIVDNHTEKSIKVQQPEDEYKVARRLIDDGDDFRRTQSDIELVYTEVMKGQRA
>NZ_CP015442.1|WP_011679270.1|400731_401199_+|LytTR-family-transcriptional-regulator
MEININIDDKLKDVQVVISGSDIEQLADIAQYLKSRNTPSRQLAIKTADNIRVVDKEDIILVESYGNDLTFTLKNNHKITTRKTLKRFLEENQKSDFVQISKSEVMNLSYLSKMESAFSGNYYAFLTNQARVTVSRRFIKGILKRLEGNAEDEAF
>NZ_CP015442.1|WP_014324309.1|401185_401596_+|DUF3021-domain-containing-protein
MKHFKEAIVYLLVGIGVGSFISLLSFTLNHATPSMKQFGLLMTMSAIMGLLSLIFEYDKITFITQLISHFILEMLTYGFFIWLTFGSAVITFTNIPTFVITYVIIFIYFRKQGRDNARRINEQLQKNKPKKSDSTN
>NZ_CP015442.1|WP_011679272.1|401729_403820_+|DNA-topoisomerase-III
MPNYLILTEKPSAAANFTKALGGKTGVFSDFTYKITNLRGHVMTLKDPEEMVAEDLKKQYKSWLVKHLPWNLEDFSWARTYIRQRNIRTGKIESTKKLIDELKKESKSGYDAIVIATDTDPSGEGELLAWEALDAIGWRGQVLRANFMDESVSGIQKAMHQLRNVSDKMADGEYVKGESRNRWDFASMQLTRIATTAAKKEGFKVVAREGRLKSVIVWRIYQQLAAIKNYIKTPYFEVKFKDPAGHIFGRVTPQGEVIPWRFATKEQAKVDFNNYHETEVINEKHQTRTQAPGKLLDLAGLASILAPRGFSSKEVLSTYQKMYEAQIVSYPRTEDKTVTPEQFNELLPLIDQIAGVVGVDKNLLTHRSPRKTHVKSQGAHGANRPGENVPQTTQSLAKFGSSGPAIYEVLAKNYLAMLAEDYVYDHVTANLKDYPEFKTAFNIPIKLNFKLVYDSQKAIKVEEGEEEESISGQLGPQAMPYLHEGANPKPQVPTTKWIMAFLEKHNVGTGATRVSTLSEMSRGTKAMLTEKRGKLGLTETGNVSAIMVKDTWIASPKITKRLFEMMDQVGRFEMTMVQVLDSATKVVEHDMPIMLDNAQTLETLLGKPKPSIKKPRKTSEKMTGIWQGQEITFAREWSGHVFTDEELQKLLTGSEVSFPAKSKRGKSYTAVGKMAKQTFKGNTFYGFKLNPKTKKA
>NZ_CP015442.1|WP_084014883.1|403852_405679_-|MFS-transporter
MIKSTKRLGFIGLTIAMFMGTLDSTIVNIALPKLMTTFNTNLAGVSWVATTYTLALAVFMITATKLGDKFGRKKLMIIGLLLFAGSSASCMFAPSLMYLLVFRSFQGLGGAIITPLVLPMGVELFGKQHMSKIAAIVGAITALAAAGGPAAGGFILEYMSWHWIFGLNVPIGLISLLLVLLFTKESFDETLVGHFDISGMLFLTISLTGITFGLLEGREYGWTSTLILSSFLAGIIGLITFILIELKVSSPIVELNLFREKTFTSSCIIYFATGFALVAPAVIFNYYLQNVLNYDALHAALMIIPVSLAIAVTMPLATRLSDRISAIPVNLIGMLLIAGSLLLFSFITTTTPKRVMIVFSIIIGSGFGFSTVSFVSSVRHLPKSKTGIGSGITNASRQISTCLGIAVLVTVLNTNISTAKSHIQNHSVAIINRKNLSPNVKNTAESGIRQIFSSNDQKNVNYTSRQKQFTKQLKHAALNKNNLPRPKKGTDYRKLYDATFKISEGNQKINDSLQKLAGTTTTNKVLNNSIIALSDGTLTLLNGQKNILEAIKLLAQRDELKSTLSEIKKEKNTSLSHAFSKTYVICAFLLLLCSPIALLSDKRQKKTH
>NZ_CP015442.1|WP_084014882.1|405901_406450_+|TetR/AcrR-family-transcriptional-regulator
MNNRMSLQTREWVRGAFLELLDEVEDIKSITISDISKRSGISRRTFYRYYASKEDILTEYIDILIEQYGNDLRSKKLANFKEFIVYFFNYWGQYDHELFILQKNGLFTYVLSEFNKMIPELYATISAPWHIQKEVNSREIIYTTRYGVGGLWNVYGEWLEFDREKIEITEVAKILIQSFNSL

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Crispr_ID: NZ_CP015442_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015442_2

1663437-1664039

Unclear

Consensus_repeat	Method
ACTTTCNGGNGTGCTNTC	CRT

12 spacers

The CRISPR arrays of NZ_CP015442_2

>merge|NZ_CP015442|2|1663437-1664039|CRT
ACTTTTGGCTGTAGTTTCGGCACTCTCCGGCGTGCTTTCAGGAGCACTTTCTGGCGTGCTTTCAGGAGTACTTTCGGGGGTGCTTTCTGGCGTGCTTTCCGGCATACTTTCTGGCGCGCTCTCAGGGGTGCTTTCTGGCGTGCTCTCTGGCGTACTTTCTGGCGTGCTCTCGGGGGTGCTTTCAGGAGCACTTTCTGGCGTGCTTTCGGGGGCACTTTCTGGCGTGCTTTCGGGGGCACTTTCTGGCGTGCTCTCTGGAGTACTTTCTGGCGTGCTTTCAGGGGTGCTCTCTGGCGTACTTTCAGGGGTGCTTTCCGGGGCACTTTCTGGTGTGCTTTCTGGCGCGCTCTCAGGGGTGCTTTCTGGCGTGCTTTCTGGCGTACTCTCGGGGGTGCTTTCAGGAGCACTTTCTGGCGTGCTTTCCGGCGTACTTTCGGGGGCACTTTCTGGCGTGCTTTCAGGAGCACTTTCTGGCGTGCTCTCTGGCGTACTTTCTGGCGTGCTCTCGGGTGTGCTTTCAGGAGCACTTTCTGGCGTGCTTTCGGGGGCACTTTCTGGCGTGCTCTCGGGTGTGCTTTCGGGGGCACTTTCTGGCGTACTCTC

>NZ_CP015442|2|1|1663437-1664039|CRT
ACTTTTGGCTGTAGTTTC	GGCACTCTCCGGCGTGCTTTCAGGAGC
ACTTTCTGGCGTGCTTTC	AGGAGTACTTTCGGGGGTGCTTTCTGGCGTGCTTTCCGGCAT
ACTTTCTGGCGCGCTCTC	AGGGGTGCTTTCTGGCGTGCTCTCTGGCGT
ACTTTCTGGCGTGCTCTC	GGGGGTGCTTTCAGGAGC
ACTTTCTGGCGTGCTTTC	GGGGGCACTTTCTGGCGTGCTTTCGGGGGC
ACTTTCTGGCGTGCTCTC	TGGAGTACTTTCTGGCGT
GCTTTCAGGGGTGCTCTC	TGGCGTACTTTCAGGGGTGCTTTCCGGGGCACTTTCTGGTGTGCTTTCTGGCGC
GCTCTCAGGGGTGCTTTC	TGGCGTGCTTTCTGGCGT
ACTCTCGGGGGTGCTTTC	AGGAGCACTTTCTGGCGTGCTTTCCGGCGT
ACTTTCGGGGGCACTTTC	TGGCGTGCTTTCAGGAGC
ACTTTCTGGCGTGCTCTC	TGGCGTACTTTCTGGCGTGCTCTCGGGTGTGCTTTCAGGAGC
ACTTTCTGGCGTGCTTTC	GGGGGCACTTTCTGGCGTGCTCTCGGGTGTGCTTTCGGGGGC
ACTTTCTGGCGTACTCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015442.1\|WP_084014497.1\|1672687_1673674_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|237282
NZ_CP015442.1\|WP_059442469.1\|1666556_1668503_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP015442.1\|WP_059442188.1\|1657346_1658225_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_CP015442.1\|WP_002815336.1\|1677526_1677778_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP015442.1\|WP_011680228.1\|1653324_1654422_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP015442.1\|WP_011680241.1\|1677207_1677477_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015442.1\|WP_059442467.1\|1671212_1672607_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP015442.1\|WP_011680229.1\|1654418_1655240_-\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_CP015442.1\|WP_084014498.1\|1673755_1675195_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP015442.1\|WP_011680226.1\|1651131_1651842_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP015442.1\|WP_011680230.1\|1655246_1657343_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP015442.1\|WP_011680239.1\|1675210_1676677_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP015442.1\|WP_084014496.1\|1665370_1666459_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP015442.1\|WP_025268372.1\|1676678_1676987_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP015442.1\|WP_059442468.1\|1668507_1671072_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP015442.1\|WP_059442187.1\|1659947_1661657_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236626
NZ_CP015442.1\|WP_010290736.1\|1658415_1658829_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|239876
NZ_CP015442.1\|WP_011680232.1\|1659607_1659835_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP015442.1\|WP_031296130.1\|1658893_1659415_-\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP015442.1\|WP_011680227.1\|1651953_1653321_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670

Protein	Function_ID	Function_description	E-value
NZ_CP015442.1\|WP_084014497.1\|1672687_1673674_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
NZ_CP015442.1\|WP_059442469.1\|1666556_1668503_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP015442.1\|WP_059442188.1\|1657346_1658225_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	7.92911e-154
NZ_CP015442.1\|WP_002815336.1\|1677526_1677778_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.8438e-20
NZ_CP015442.1\|WP_011680228.1\|1653324_1654422_-\|hypothetical-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	4.28331e-44
NZ_CP015442.1\|WP_011680241.1\|1677207_1677477_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.32079e-51
NZ_CP015442.1\|WP_059442467.1\|1671212_1672607_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	5.87419e-152
NZ_CP015442.1\|WP_011680229.1\|1654418_1655240_-\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	5.01542e-91
NZ_CP015442.1\|WP_084014498.1\|1673755_1675195_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP015442.1\|WP_011680226.1\|1651131_1651842_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	1.9005e-105
NZ_CP015442.1\|WP_011680230.1\|1655246_1657343_-\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.02785e-83
NZ_CP015442.1\|WP_011680239.1\|1675210_1676677_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP015442.1\|WP_084014496.1\|1665370_1666459_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.70777e-23
NZ_CP015442.1\|WP_025268372.1\|1676678_1676987_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	7.88307e-30
NZ_CP015442.1\|WP_059442468.1\|1668507_1671072_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP015442.1\|WP_059442187.1\|1659947_1661657_-\|hypothetical-protein	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	6.46363e-50
NZ_CP015442.1\|WP_010290736.1\|1658415_1658829_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|239876	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis.	7.10437e-78
NZ_CP015442.1\|WP_011680232.1\|1659607_1659835_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	0.000196008
NZ_CP015442.1\|WP_031296130.1\|1658893_1659415_-\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	5.69013e-39
NZ_CP015442.1\|WP_011680227.1\|1651953_1653321_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0

>NZ_CP015442.1|WP_059442187.1|1659947_1661657_-|hypothetical-protein
MKIVIAKEINKELENWQKFQTEQILFITWTSEIEYSTRLNEVNLYDFIRNCDEHLELTNLPFTKYQILNYSSVSEKHQFEFKNFNDQIVNKIFLSGNDKHVQTVYNYDDNQKIISVDHPFNNDVGQQIIYDDQGDPMTSRFVGPNKKIEIYWQRIDNKLTETGMMLTEYGESTFYNSYWDWQFEEFYKIIAQKQNITEIISYELPALNSHIKSRRVEKGSFEYNNTLAFYKSAKDRKKWIIRFDDKNHWKPRNDAALFASLVGYHQISFDKEPYIDEVYWIIEQLERHCKYVSAGDLVIWQYPMCSAKLENAMLSWFHDKGVFIVSFIHDLTLIRYDVSKLSGYDSEGDKHVLTRFDANIVPQKFSGALNKIASVSLKNVISPEPYDFRINHTGNVEPASYDLQVVYAGSLSKFPDINNIDFDLTVFGEKNFSNINITNDNLHDGGFIPAEDLAQKLDKGFGLIWDEDADNVYRQNYTKWNWPYKFSLYMASGLPVIAWKHSAIAEIIESYQLGVIVESLSEISNVISGITPEEFHIMAEHAATFGNKLIHGESTKKAVKKLELMLSIM
>NZ_CP015442.1|WP_011680232.1|1659607_1659835_-|CsbD-family-protein
MSFEEKFDNAKDKIAGKAKELEGKITGDKAREVEGKTQNVKGEAKDDVQKVRDVAHDDVDAVKDALKNKKDNPEK
>NZ_CP015442.1|WP_031296130.1|1658893_1659415_-|DUF1456-family-protein
MAFNNNDIIIRLRYALNIKDADMIKIFKFGGVTIDEDQLHNLLTKQAEDTKRDEKVATKILESFMNGLIISQRGEKIGPDLKPVPPTFDMVNEAAINNVVIKKLKIAMAYTSDDLIGFLKTAGIQISNSELSAILRRPDHRNYKPAGDRYLRNILKGMAMEYRPEDVKRTARK
>NZ_CP015442.1|WP_010290736.1|1658415_1658829_-|nucleoside-diphosphate-kinase
MVERTFMMIKPDGVSRGKIGEIIQRIEHKGYAIKAMKMVQPTPELLAKHYAEHVGKSFYPSLVQYMTLGPVIAMIGEGTNIVSGWRTIMGTTNPTLAAPGTIRGDLGREWEGEAVMNIVHGSDSVEAAEYEIKLWFA
>NZ_CP015442.1|WP_059442188.1|1657346_1658225_-|UDP-N-acetylmuramate-dehydrogenase
MQLENIEILENHSLAPYAYTQAGGLVDYLAIPKSIHELKVLVNWAKELGMPVQVFGRLSNLIVRNGGLRGLSILLHDLRDVVVDQNKIVASAGADLIWVTEQAFEHGLSGLEWGAGIPGSVGGAVFMNAGAYGGQVDMVVSSVTALMPDGTLQNFEKKALGFGYRKSVFQSNGGIIISATFELQPDSCTAIRTRMDENNFKRANKQPLNYPSNGSVFKRPEGYFAGKLIMDSKLQGVRRGGVEVSKKHAGFMVNIAHGTGNDYEDLIHYVQKTVYEKFGVHLETEVRIMGER
>NZ_CP015442.1|WP_011680230.1|1655246_1657343_-|Na+/H+-antiporter
MAILELIVILIVAVTISNIVSHFIPEIPISLFQIAIGLFLALVCGIYVEVDSEWFMLLFIAPLLFNDAWRFPKHELWELRGPILGNSIILVILTTLVGGFLMHLLMPQLPKSVALALAAVISPTDPVAVQAIARRVKLPENVMHIVSGESLINDASGLVSFNTAIKATIAGTFLIGEAIGNFFWMTIVGLAVGLILGSFVSWLRDSFDRVGLNDVVFHTVVTLLMPFVIYWVAEDIFHSSGVIAVVAGGVLSKILSDQHMNARSPEINVVTVRTWEVFVYLLNGTIFILLGIELPAAMKDIVRSTQVHTGMAIFYGVAVWFIIFTIRTFWAYGTQITYHLKHKERAISFRMAIISGLTGVRGAVTMAAVLTVPSTIADGSAFPQRNLLVFVAAVVVIISLLVATIMLPIVTKQRTTHDFTQPEVGEVETSSTHESKVDLTEAQARIFSIRIGIQVLREQQNDHNRIIVYELIGRKQQIIDQIYRQLNKSNDHKVNIEDDRELRRVALEAQRNCLRQLLADEKISILTYSSQNRRLDRLENMIDSDKHYHLSTQWIIILWRRTLRSIRIWISDESTDQFREESSMATKEMAKEAIQSLSEYMEKYTGDTVSHRMERQAAYNLIIFYRNQIEKERHPDTPEQRELDDRYRMELEIKALNVERETIQQLYEQGRISRQAGVNIRQFINYAETAALAGRDEE
>NZ_CP015442.1|WP_011680229.1|1654418_1655240_-|TIGR00159-family-protein
MNILLYFTFNNLMHVIDIAIIWFILYKLIQFVEGTRALQILFGVGFVILVKVVSWYLGLVTLSWIMDQIITWAPIAVVVIFQQEIRRGLESLGRRLVIRRARVDNSKEHQLIKSLDDALQYMSKRRIGALITIKRDGSLDEYIKTGIKLDAYITGQLLINTFIPNTPLHDGAVIIDDDRIAVAAAYLPLSESTRIPKELGTRHRAAVGISEASDAITVVVSEETGEISITQGGDLLRNMDQESYMNFFEHQFLVQIDEENDKHWWQKIGGRSK
>NZ_CP015442.1|WP_011680228.1|1653324_1654422_-|hypothetical-protein
MKKIGQSKIVNLVVSLVIAILLAAYVSSTKQGTATNNGGSTNFSTLIPEKRATLKVPLNLQVDSDKYVVIGAPSTVKVGIEGSGPLVTAAQSHNDIQASVDLRSLGVGKHNVKVALRGVNSSLTSTVTPQTVTVTISQKKSAKLPVQVSFDKSKIATGYTVGDTTSDPKNVTISGPKANVEAVSYVDAKVSLDSGVKQSVSQSVKLVARDKDGNAVEVNISDPTANVTLDVEPEDSKKMNLSATINNGDSDDYTITFDPKTVTAYGSSDILKSVDTINIPVDVGNISNKTTRTIEIPTQTGIVEYSVSKVKVTITPSNTSSTSSSSTGSTSSSSSSSSSSSSESTSSTSSSTQSSASTTSETKGQ
>NZ_CP015442.1|WP_011680227.1|1651953_1653321_-|phosphoglucosamine-mutase
MSEFNLKYFGTDGVRGVANKTLTPELAFRLGRTGGAILTRHANDENKKPVVIVGRDTRISGEMLQQAIIAGFLSVGIDVLRLGVITTPAVAFLVQNLEADAGVQITASHNPAADNGIKFFGNDGFKLSDQLEYEIEQLLDESEDTLPRPSADGLGVVNNYPEGVQKYLEFLQKTIPTDLNGMRIALDGANGATSGLLARLFADLGTDFVTLGTEPNGLNINDGVGSTNPAALAELVKENDVQAGLAFDGDGDRLIAVDENGEIVDGDKIMFITGKFLNEQGRLKHNAVVSTVMSNIGFYKALAENDMTSIKTAVGDRYVMEEMIKSDHNLGGEQSGHIIFRDWATTGDGLLTALQLLYVMKETGKKLSELAAPVHIYPQKLVNITVADKEEIQHDPDVIAKIAEVEAQMAGDGRVLVRPSGTEPLLRVMVEAPTQELVEKYTESIANVVREKSGL
>NZ_CP015442.1|WP_011680226.1|1651131_1651842_-|ribonuclease-III
MSQDSFKSYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIVAEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDRFIDFKSRLQERLQTKGSVDIDYQTEKEEQLSDNTQLFEASVSANDKELARGTGKSIKDAEKAAARAALKILEDNVNL
>NZ_CP015442.1|WP_084014496.1|1665370_1666459_+|helix-turn-helix-transcriptional-regulator
MRNILVYLTNILNFNAYSFDIQKNRLEVIASTFDFDFSNASHFAEQAKKNTYSLIKTSDFFTIGILVSPNQLILLIPNFTIFNYVEKDLNLLFILSRLKLLCQLVYEVISNTTAPEDEVYIGGLQSESIEYIDESMYQETLSLNELNIKLLHAILSHDRNQFLFWKSKLLKNKVLISELTNVYSKNTLIEYIALLSNLVINYGYPCQDVYAIKKKIYATIEQSNSDPINIEILNQIICLFFDLLLNETYSSEIEGFQKIKYHIDRNITQSLTLSDIARNLHMPLKELNPLFKSKYNITINQYIRRKKIDISKSLLYATNLSFQDIATFVGFNSQSYFITTFKAIVGQTPSDYRKCNKKQNLV
>NZ_CP015442.1|WP_059442469.1|1666556_1668503_-|DNA-mismatch-repair-endonuclease-MutL
MRIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDVIVEEAGESLIRVVDNGEGINPEDVPLAFTRHATSKISNRHDLFNIMSLGFRGEALPSIAAISDVTLNTTTQEAPSGIMYHIKGGKQVSATPANGRRGTVVSVRDLFYNTPARLKYLKRPQTELSRIADIMNRIALSYTNVAFTVTADGRNILQTNGDGNQQRVIAAIYGRDVAQKMRAIAGEDDDFNITGFVSLPELTRGSRDYLTILVNGRFIKNFSVSNAVIRGYGSKLMVGRFPMGVININTDPLLVDVNVHPQKAEIRLSKEAELSALIIDTIKSCFADENLIPDAYENLYGQAQTNKIEPPAPKQVAPWAKPDMEQTIAVNTGIDSNEVVINQEADLMNDAVNEFTQKYAHEPNLPIFDDEITVQVSENISSYNKPEIPTQEELDISPKKPSGFPSLEYIGQMHGTFLFAQSSEGFYLIDQHAAQERVKYEYYRKEIGQVGTDKQRMLVPITINYSVADMLKIADKEAELEAIGLTLEPFGPTTVIVREHPTWFEKGQETETIKEMVDWILRDGNLTVAEFRERTAIMMSCKRSVRANMHLSDLQARTLLESLASTENPYNCPHGRPVVTSFTLTEMEKMFKRIQDSHEAWEEYDNHPY
>NZ_CP015442.1|WP_059442468.1|1668507_1671072_-|DNA-mismatch-repair-protein-MutS
MAKVAETPMMVQYHEIKSQYPDAFVFYRLGDFYELFEDDAVLGAKLLELTLTARNKNSENPVPMAGIPHHAAQNYIDILVDQGHKVAIVEQMEDPATAKGMVKRDVVQLITPGTKLNSGMGNDKQNNYLAAVLPRDNRYFLSYIDLSTGELKTTTLKRFSDVIDELSSLEVKEIVLLKDDETTELGIANKLAERGLVISTQSDVNVNATVSFLTQPLVHENEAQVTTILLNYIFDTQRRNLDHIIPAQNYERLAYLKFNQDTRTNLDLVKNARTKKKAGSLLGLIDETKTAMGGRLLKQWLLRPLRDTEDINERLDMIEAFQNEFFVRGALQDHLKSVYDLERLAARAAMGTMNARELVQLKRSLSAIPGMKSVLSSSQGILNHASQRLEDMSDLAGLIDEAIVDEPPISIREGDIINDGFDSKIDEYRNVLSQNQKWLAQLESDERAATGINSLKVKYNKNFGFFIEVSRANVSKLEEGRYERKQTLTNAERFVTPELKEHERLINEAQLKRTEREYELFITIRERVKANISRLQKLARQVAQLDVLASLADVADNHRFVRPTFTDDNIINIKQGRHPVVEAILEAGEFVANDVNLDQNTAMQLITGPNMAGKSTYMRELALIVILGQMGSFVPAESAVLPIFDQIFTRIGANDDMAMGQSTFMVEMSEANLALQEASAHSLILFDELGRGTATYDGMALAQAIIEYLDAHVHAKTLFSTHYHELTALTDKHENIKNVHVGAVEDESGELHFLHQIQQGPADKSYGIHVAALAGLPDELIANATTILSGLENQEASVPEPKASGLSEQVALFNVSDVDPKTETLFQKLDSINISTMTPLEALNVLAELQKLRK
>NZ_CP015442.1|WP_059442467.1|1671212_1672607_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAKANRVYKTKAPVAKNQEIEATVIDITYQGMGVVKVDNFPIFVVDAIPGEIVRVSVTKVLKSYAFGRVTRRIQESENRVQNANKIAITTGIAPLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDSLRELGVSAYEEETKKGVIRHIMARRGYYSHELMVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADEGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESITVFKKAEN
>NZ_CP015442.1|WP_084014497.1|1672687_1673674_-|diacylglycerol-kinase-family-lipid-kinase
MKRARIIYNPTSGREAIKREMLDILAVYEKAGYETSAFATTPEPLSAAKEARRAAEAGFDLIVAAGGDGTINEVVNGLSPLTKRPMMAVIPAGTTNDYARALKLPRDEPLESAKVILQNETIKMDIGKIEKDNEIKYFMNIAALGTISEVTYAVPSLMKSLYGYLAYLVKGAELITRVKAVNAKVIFDDGEYSGKTSMIFLALTNSVGGFESIVPDAKLDDGRFTLLIIKEANLAQMLQMVAQMINGGKHIDNPKLIYKKTNKVEILPLDNDQMKVNLDGEYGGDAPMKFTDLQQHIEFVANRSGMSENSVSVAKRKFIEEAEKLDTK
>NZ_CP015442.1|WP_084014498.1|1673755_1675195_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MGTGNFETTIGLEVHVEMQTKSKLLSPSPVHYGDKPNTNTNVIDFGYPGVLPVANKGALEYGMRVALALHAQISPLIRWDRKNYFYPDNPKAYQTTQSQTPIGTNGYLDVTLADGTVKRVHIAEMHVEEDAGKNTHGSDGYSYVDLNRQGTPLIEIVSEPDLASPDEAYAYLEQLRQVILFTGVSEAKMQEGQMRADVNVSLRPFGSDQYGTKVEMKNINSFNYVRNALIFEEKRQAEVLRSGGVIQQETRRYDEPTKSTILMRVKEGADDYRYFPEPDLSPMVIDQKWIDEVAADLPKSSSERQEAYVNDLGIEPYDAEVLTQTLAMSDFYDATVASGADPKRAANYLIGDVNAYMNKNQVELQDTRLTPEHLAGMIKLIEDGTISTKQAKQVFEAIMIGEEPEAFAKKHGLVQLSDPDLLLGWITEVLDNNPQSIEDFKGGKDRATGYLIGQLMKMSKGQANPSVLNKLLLSELKKR
>NZ_CP015442.1|WP_011680239.1|1675210_1676677_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MTINYFEHDLTSLHNQLVNKEVSAVDLTRASLDNISKTDDKLNAFISTNPDEAIAQAQKIDEKSDFSNVLTGLPLGLKDNMATKGIQTTGASHILEGFKPIYNATVVEKLQNLGAVSVGKTNMDEFAMGGSTETSYYKQTSNAWDHSKVPGGSSGGSAAAVAAGQVPFALGSDTGGSIRQPAAFNGIVGLKPTYGRVSRWGLFAMASSLDQIGPFTRTVKDNATVLNAIAGFDEKDSTSSQREVPDFTAKLSGDVKGLKIAVPKEYFGEGIDPKVAKQVKAAIAQLEALGATVDEVSLPHTKYGVAAYYIIMSSEASSNLQRYDGVRYGFRADDVKNLEDLYVKTRSEGFGDEVKRRIMLGTFSLSAGAYDAFFKKAAKIRTLLIEDFNKVFENYDVIVGPTAPTAAYGLGEEVDDPTAMYLADVLTIPVNLAGLPGLSVNAGFVDGLPVGLQIIGKPFDEQTVYQTGYAYEQASRLFEQHPDVAKEY
>NZ_CP015442.1|WP_025268372.1|1676678_1676987_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MAETTITRDEVAHVAGLAKLAFNDADLDQFTTQLGDILNIFDTLSEVNTDDVIPTYSVTENVNHLREDVANNWNQKQELLNNAPLEAADLIKVPAILNGEGE
>NZ_CP015442.1|WP_011680241.1|1677207_1677477_+|30S-ribosomal-protein-S15
MALTQERKNEIIKAYARHEGDTGSAEVQIAVLTADINELNTHMAAHKHDFHSQRGLMKKIGSRRNLLRYLRNTDIQRYRELIQRLGLRR
>NZ_CP015442.1|WP_002815336.1|1677526_1677778_+|30S-ribosomal-protein-S20
MPVIESAIQRVRLTKKQHDRNEPQLSAYRTAVKKFEKAAAAGTDNLAELYKAASSAIDHAYSKGLIKKNKASREKSRLAKYVK

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Crispr_ID: NZ_CP015442_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015442_3

1803006-1804152

Orphan

Consensus_repeat	Method
TTCTGACCNTCTATACCGTTTA	CRT

17 spacers

The CRISPR arrays of NZ_CP015442_3

>merge|NZ_CP015442|3|1803006-1804152|CRT
TTCTGACCATCAATACCGTTTACGCCATTTTTGCCATCGACACCGTTCTGACCGTCTATACCGTTTATGCCATTTTTGCCATCGACACCATTCTGACCGTCTATACCGTTTATGCCATTTTTGCCATCGACACCGTTCTGACCGTCTATACCGTTTATGCCATCTTTGCCATCGACACCGTTCTGACCGTCTATACCGTTTATGCCATCTTTTCCGTCGACACCATTTTGACCATCTTTGCCGTTTACGCCATCTTTGCCGTCGACACCGTTCTGACCATCAATGCCGTTTACGCCATCTTTGCCATTGACACCATTCTGACCGTCTATACCGTTTATGCCATCTTTACCATTGATACCGTTCACGCCATCTTTACCATCGATACCGTTTTGACCATCAAGACCGTTTATGCCGTCTTTTCCATCGACACCGTTCTGACCGTCTATACCGTTTACACCATTTTTGCCATCGACACCGTTCTGACCGTCTATACCGTTTATGCCATCGACACCGTTTTGACCATCAAGACCGTTTACACCACTTTTGCCATCGACACCGTTCTGACCGTCTATACCGTTTACACCATCTTTGCCATCGACACCATTTTGACCATTGATGCCGTTTACGCCATTTTTGCCATCGACACCATTCTGACCATCAATGCCGTTTACGCCATCTTTGCCATTGACACCATTCTGACCGTCTATACCGTTTACGCCATTTTTGCCATCAACACCGTTCTGACCATCGATGCCGTTTACGCCATCTTTGCCATCGACACCGTTCTGACCATCTATACCGTTTACGCCATCTTTGCCATCGACACCATTTTGACCATCTTTGCCGTTTACGCCATTTTTGCCATCGACACCGTTCTGACCATCTATACCGTTTACGCCATCTTTGCCGTCAACACCGTTCTGACCGTCTATACCGTTTACGCCATTTTTGCCGTCGACACCGTTCTGACCATCAATGCCGTTTACACCATTTTTGCCATCGACACCATTTTGACCATCTTTGCCGTTTACACCGTTCTGACCGTCTATACCGTTCTGACCATCAATGCCGTTTACACCATTTTTGCCATCGACACCATTTTGACCATCTTTGCCGTTTACACCGTTCTGACCGTCTATACCGTTTA

>NZ_CP015442|3|2|1803006-1804152|CRT
TTCTGACCATCAATACCGTTTA	CGCCATTTTTGCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	TGCCATTTTTGCCATCGACACCA
TTCTGACCGTCTATACCGTTTA	TGCCATTTTTGCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	TGCCATCTTTGCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	TGCCATCTTTTCCGTCGACACCA
TTTTGACCATCTTTGCCGTTTA	CGCCATCTTTGCCGTCGACACCG
TTCTGACCATCAATGCCGTTTA	CGCCATCTTTGCCATTGACACCA
TTCTGACCGTCTATACCGTTTA	TGCCATCTTTACCATTGATACCGTTCACGCCA
TCTTTACCATCGATACCGTTTT	GACCATCAAGACCGTTTATGCCGTCTTTTCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	CACCATTTTTGCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	TGCCATCGACACCGTTTTGACCATCAAGACCGTTTACACCACTTTTGCCATCGACACCG
TTCTGACCGTCTATACCGTTTA	CACCATCTTTGCCATCGACACCATTTTGACCATTGATGCCGTTTACGCCATTTTTGCCATCGACACCA
TTCTGACCATCAATGCCGTTTA	CGCCATCTTTGCCATTGACACCATTCTGACCGTCTATACCGTTTACGCCATTTTTGCCATCAACACCG
TTCTGACCATCGATGCCGTTTA	CGCCATCTTTGCCATCGACACCGTTCTGACCATCTATACCGTTTACGCCATCTTTGCCATCGACACCA
TTTTGACCATCTTTGCCGTTTA	CGCCATTTTTGCCATCGACACCGTTCTGACCATCTATACCGTTTACGCCATCTTTGCCGTCAACACCG
TTCTGACCGTCTATACCGTTTA	CGCCATTTTTGCCGTCGACACCGTTCTGACCATCAATGCCGTTTACACCATTTTTGCCATCGACACCATTTTGACCATCTTTGCCGTTTACACCG
TTCTGACCGTCTATACCGTTCT	GACCATCAATGCCGTTTACACCATTTTTGCCATCGACACCATTTTGACCATCTTTGCCGTTTACACCG
TTCTGACCGTCTATACCGTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015442.1\|WP_011680342.1\|1791400_1792039_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP015442.1\|WP_002815764.1\|1792049_1792361_-\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|376702
NZ_CP015442.1\|WP_081099125.1\|1812346_1812610_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015442.1\|WP_011680350.1\|1806169_1806382_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015442.1\|WP_059442324.1\|1806534_1806924_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015442.1\|WP_059442322.1\|1794101_1794770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015442.1\|WP_011680352.1\|1806930_1807338_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	unknown
NZ_CP015442.1\|WP_084014923.1\|1792360_1793500_-\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
NZ_CP015442.1\|WP_010281711.1\|1815841_1816732_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP015442.1\|WP_010283757.1\|1795486_1796137_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP015442.1\|WP_011680344.1\|1793489_1794026_-\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
NZ_CP015442.1\|WP_025268456.1\|1794876_1795380_-\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|369297
NZ_CP015442.1\|WP_084014924.1\|1797381_1801965_-\|hydrolase	unknown	unknown	gnl\|CDD\|334895
NZ_CP015442.1\|WP_010288668.1\|1812545_1813229_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NZ_CP015442.1\|WP_011680357.1\|1814659_1815655_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240662
NZ_CP015442.1\|WP_011680347.1\|1796905_1797325_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP015442.1\|WP_085775755.1\|1807393_1812046_-\|glucosyltransferase	unknown	unknown	gnl\|CDD\|334895
NZ_CP015442.1\|WP_011680358.1\|1816829_1817468_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP015442.1\|WP_011680356.1\|1813260_1814499_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP015442.1\|WP_050884267.1\|1790823_1791408_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627

Protein	Function_ID	Function_description	E-value
NZ_CP015442.1\|WP_011680342.1\|1791400_1792039_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	7.05448e-52
NZ_CP015442.1\|WP_002815764.1\|1792049_1792361_-\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|376702	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localizes to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	2.6752e-33
NZ_CP015442.1\|WP_081099125.1\|1812346_1812610_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.15069e-12
NZ_CP015442.1\|WP_011680350.1\|1806169_1806382_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000184838
NZ_CP015442.1\|WP_085775755.1\|1807393_1812046_-\|glucosyltransferase	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
NZ_CP015442.1\|WP_084014923.1\|1792360_1793500_-\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
NZ_CP015442.1\|WP_010281711.1\|1815841_1816732_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	6.75227e-59
NZ_CP015442.1\|WP_010283757.1\|1795486_1796137_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	7.83218e-44
NZ_CP015442.1\|WP_011680344.1\|1793489_1794026_-\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	3.84845e-64
NZ_CP015442.1\|WP_025268456.1\|1794876_1795380_-\|DUF1440-domain-containing-protein	gnl\|CDD\|369297	pfam07274, DUF1440, Protein of unknown function (DUF1440). This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.	3.76843e-60
NZ_CP015442.1\|WP_084014924.1\|1797381_1801965_-\|hydrolase	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
NZ_CP015442.1\|WP_011680347.1\|1796905_1797325_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	4.84177e-29
NZ_CP015442.1\|WP_011680357.1\|1814659_1815655_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240662	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	1.06255e-174
NZ_CP015442.1\|WP_059442324.1\|1806534_1806924_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.52097e-11
NZ_CP015442.1\|WP_010288668.1\|1812545_1813229_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	2.63535e-08
NZ_CP015442.1\|WP_011680358.1\|1816829_1817468_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.11049e-54
NZ_CP015442.1\|WP_011680356.1\|1813260_1814499_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.0502e-67
NZ_CP015442.1\|WP_050884267.1\|1790823_1791408_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	1.16414e-57

>NZ_CP015442.1|WP_084014924.1|1797381_1801965_-|hydrolase
MPFTEKVMRKKLYKVGKSWVVGGVCAFALTASFALATPSVLGDSSVPDVSANNVQSASDNTTDTQQNTTVTEENDKVQSAVTNDNVTTAASDTTQSADNNVTEKQSDDHALDNEKVDNKQDEVAQTNVTSKDEESAVASTDTDPAETTTDETQQVSGKYVEKDGSWYYYFDDGKNAKGLSTIDNNIQYFDESGKQVKGQYVTIDNQTYYFDKDSGDELTGLQSIDGNIVAFNDEGQQIFNQYYQSENGTTYYFDDKGHAATGIKNIEGKNYYFDNLGQLKKGFSGVIDGQIMTFDQETGQEVSNTTSEIKEGLTTQNTDYSEHNAAHGTDAEDFENIDGYLTASSWYRPTDILRNGTDWEPSTDTDFRPILSVWWPDKNTQVNYLNYMADLGFISNADSFETGHNQSLLNEASNYVQKSIEMKISAQQSTEWLKDAMAAFIVTQPQWNETSEDMSNDHLQNGALTYVNSPLTPDANSNFRLLNRTPTNQTGEQAYNLDNSKGGFELLLANDVDNSNPVVQAEQLNWLYYLMNFGTITANDADANFDGIRVDAVDNVDADLLQIAADYFKLAYGVDQNDATANQHLSILEDWSHNDPLYVTDQGSNQLTMDDYVHTQLIWSLTKSSDIRGTMQRFVDYYMVDRSNDSTENEAIPNYSFVRAHDSEVQTVIAQIVSDLYPDVENSLAPTTEQLAAAFKVYNEDEKLADKKYTQYNMASAYAMLLTNKDTVPRVYYGDLYTDDGQYMATKSPYYDAINTLLKARVQYVAGGQSMSVDSNDVLTSVRYGKDAMTASDTGTSETRTEGIGVIVSNNAELQLEDGHTVTLHMGAAHKNQAYRALLSTTADGLAYYDTDENAPVAYTDANGDLIFTNESIYGVQNPQVSGYLAVWVPVGAQQDQDARTASDTTTNTSDKVFHSNAALDSQVIYEGFSNFQAFATDSSEYTNVVIAQNADQFKQWGVTSFQLAPQYRSSTDTSFLDSIIQNGYAFTDRYDLGYGTPTKYGTADQLRDAIKALHASGIQAIADWVPDQIYNLPEQELATVTRTNSFGDDDTDSDIDNALYVVQSRGGGQYQEMYGGAFLEELQALYPSLFKVNQISTGVPIDGSVKITEWAAKYFNGSNIQGKGAGYVLKDMGSNKYFKVVSNTEDGDYLPKQLTNDLSETGFTHDDKGIIYYTLSGYRAQNAFIQDDDNNYYYFDKTGHLVTGLQKINNHTYFFLPNGIELVKSFLQNEDGTIVYFDKKGHQVFDQYITDQNGNAYYFDDAGVMLKSGLATIDGHQQYFDQNGVQVKDKFVIGTDGYKYYFEPGSGNLAILRYVQNSKNQWFYFDGNGHAVTGFQTINGKKQYFYNDGHQSKGEFIDADGDTFYTSATDGRLVTGVQKINGITYAFDNTGNLITNQYYQLADGKYMLLDDSGRAKTGFVLQDGVLRYFDQNGEQVKDAIIVDPDTNLSYYFNATQGVAVKNDYFEYQGNWYLTDANYQLIKGFKAVDDSLQHFDEVTGVQTKDSALISAQGKVYQFDNNGNAVSA
>NZ_CP015442.1|WP_011680347.1|1796905_1797325_+|Rrf2-family-transcriptional-regulator
MKYSTKLSDAIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGRADPKLARPADTISLLDIYRAVEEDTSFLKIDTKTNQNCNVGSHIQTTLDKYYNQVQEAAEKEMNKIKLADIIKEIQIDN
>NZ_CP015442.1|WP_010283757.1|1795486_1796137_-|NAD(P)H-binding-protein
MAIKIGVIGATGMAGSAVYQEAFDQGFDVTAIVRSTVKAHKTLGQDAKVLEKDAFALTKEELLQFDVIINAFATAPALAYRHIDLAAYLIGLFRETTVPRLIFILGAGSLMTGEDNHLLLEDLKKLPDAASWVSIPDNQKKELDFLRNIDNVNWTGVSPGITFQAGEATQYKLGTDYLLFGEDNESVTNSGTMAKAIVSEIIKPSSEKKRFTVVNA
>NZ_CP015442.1|WP_025268456.1|1794876_1795380_-|DUF1440-domain-containing-protein
MLKFLLAVVVIGTIAGVISGMVKIGWEAILPPRTQERDETNPPQRLLQQMGIPRKWTHAYFYYATDQKVHYVALIMHFSFSIAFGVLLVLLDQYFPIVTFGQGSVYGIVIWIIFHIIILPATKTIPSALKQPFSEHFSEFLGHIVWGWSMYLIMIALIVVTNWLPHY
>NZ_CP015442.1|WP_059442322.1|1794101_1794770_-|hypothetical-protein
MDYMMKRIIIISALLTGLSLVVLGTQLETENQPAEAASMNQTVNVKAVSSAISSFTDVKLTKVEAIPKKVVTSSEKNEVKANLQPSEAQEKAADIAQVTSVSSATTTAEVSKTAATVNETQPTQVVAESNQSTQNTTVTETPVASSDIQWLIQHESGGNVNAQNGAYYGIGQLSENYYAQYVPGKDYHGNYAVQLEAMQKYISARYGTVANAIAHWQVNNWY
>NZ_CP015442.1|WP_011680344.1|1793489_1794026_-|YqeG-family-HAD-IIIA-type-phosphatase
MRLEHFTPTYMVERIYDLTVEDLKARGIKTVLADLDNTLLAWNNPDGTPELKQWLQDLRDGGIELIVVSNNTTKRVEKAVKPLDVKFVSWSLKPLPRGILHVLRTHHLKRQEVIMVGDQLLTDVWAAHSAGVRSVLVQRLIESDMWQTWLNRRIEKYVKKIVFQAHPHLKWEKTLRDN
>NZ_CP015442.1|WP_084014923.1|1792360_1793500_-|ribosome-biogenesis-GTPase-YqeH
MTTEITDEYVQEQLNEGLRCIGCGALMQVEDKDKIGYLPMSALKKSISSEELFCQRCFRLRHYNEIQPVELTDDDFANLLHQISDTKALIVYVIDVFDVTGSAISGLPRFVGKDNPILVVANKVDLLPKLLNKNRLKNWLRTELKAQGIQPVDVFLTSATRPKNLDDLLDTIDNFRDGRDVFVVGVTNVGKSTLINQIIKSRTGIQNLITTSRFPGTTLDRIEIPLEDGQQLIDTPGIIKRDQMAHVLTDKDLKFALPKNEIKPRTYQLNPEQTIFIGGLARFDFISGARSAITAYFENNLNLHRTKLIGSDDFYEQHAGGLLVPAPSQLQNLIKHEFSITEDSDIVFSGLGWISVPAGIKVAGWAPKGVSVLIRKAMI
>NZ_CP015442.1|WP_002815764.1|1792049_1792361_-|ribosome-assembly-RNA-binding-protein-YhbY
MQLTGKQKRYLRSQANTLSPIFSVGKNGLTQNWVDEIVLALAKRELVKISLQQSADETAKEVADFIEAHSDITVAQTIGRTVVLYLPAKEDKYKKISLDLAKI
>NZ_CP015442.1|WP_011680342.1|1791400_1792039_-|nicotinate-nucleotide-adenylyltransferase
MIGTSTTALKHQLELEPSETKHRIGIFGGTFNPPHVGQLVLAECVGKQLGLEKVYWMPNAQPVDATHASAIEPSYRMQLVHMAILDNPFFELELLEIRNGGESHTYQSMKELVDTHPENEYYFIMGANTVRKLPTWDHIDELSQIVTFAAGVHSGQETTSDYPVLWFDVPNISVSASEVRTRIRMNQSINYLVPEREALFIREYDLYRGLYD
>NZ_CP015442.1|WP_050884267.1|1790823_1791408_-|HD-domain-containing-protein
MTKYFNGTITDLEAKISEKLSDYRYQHVLRVRDYAVKLAKANDVDVDKAEVAALVHDYAKERSDNDFLKVIEAQHMDPDLINWGNYVWHGIVGAEMIRNELGIVDEDILTAVRQHTTGAGASMNKLSQVIFMADYLELGRDFKGVEEARTITDQSLAQGIKYQIVHTLARLIHKETPIYPKSLETYNYWVKKEK
>NZ_CP015442.1|WP_011680350.1|1806169_1806382_-|helix-turn-helix-transcriptional-regulator
MSLTLQFRDATSVRKEIAIRGESIAIFSKRIGVNYSLMTEYLNNKKHPSPPTAKKIAKGLDKEIKDIFFI
>NZ_CP015442.1|WP_059442324.1|1806534_1806924_+|helix-turn-helix-transcriptional-regulator
MVTKEQFGQKIKHIREKKHYTVRQAALQGNFSSAYLSQIENGNKNIPKVETLYRIAKGLRISKDEILHIAGITSHTAPKHPNNVDLGKQFADDDLLLSFEGKPLSPEYREAILSILRTLPDVDEKTKED
>NZ_CP015442.1|WP_011680352.1|1806930_1807338_+|ImmA/IrrE-family-metallo-endopeptidase
MYIDDRISNYLEQIVQKNGLTLIHIDGTELDPDVANGRKRAIIINNNYKTNFSRYFRIAHEISHLIYTRSNDTYAFSPLSKLSDETEANLHAIQILVDFYFSEIPLKQERWERRFHFIEAFGLGQITHLVEKILA
>NZ_CP015442.1|WP_085775755.1|1807393_1812046_-|glucosyltransferase
MRNRNATSVFRKKMYKSGKMLVIAGSVSIIGVTSFIQQAQADVSQNNGVVVATAVDQSNLDATTSDKSITTDDKAATTAATSTDDKATTTVATSTDDKATTTAATSTDDKATTTVATSTDDKATTTAATSTDDKATTTVATSTDDKATTTAATSTDDKAATTAATSTDDKAATTAATSTDDKAATTAATSTDDKAATTAVTSTDDKAATTAATSTDDKATTTAATSTDDKTATTVGTSDNNNSATASDKDVSSSAQKSQTIDNNSKTADTTAALEASSKNLKTIDGKTYYYDDDDQVKKNFATVIDGKVLYFDKETGALADTNDYQFLEGLTSENNTYTEHNASVGTSSDSYTNVDGYLTADSWYRPKDILVNGQNWESSKDDDLRPLLMTWWPDKATQVNYLNAMKYLDATETETVYTSDDSQDALNKAAQNIQVKIEEKISQEGQTQWLKDDISKFVDSQSNWNIASESKGTDHLQGGALLYVNSDKTPDANSDYRLLNRTPTNQTGTPLYTTDPTQGGYDFLLANDVDNSNPVVQAEQLNWMYYLLNFGSITNNDADANFDSIRVDAVDNVDADLLQIAADYFKAAYGVDKSDAISNQHVSILEDWSDNDAEYVKDNGDNQLSMDNKLRLSLKYSLTMPAVDQYGNKRSGLEPFLTNSLVDRTNDSTDNTAQPNYSFVRAHDSEVQTVIAEIIKQRIDPDSDGLSPTMDQLTEAFKIYNADQLKTDKEFTQYNIPSTYATILTNKDTVPRVYYGDMYTDDGQYMATKSLYYDAIDTLLKSRIKYVSGGQTMSMKYMQGDSSMAADSYRGILTSVRYGNGAMTATDAGTNETRTQGIAVIESNNPDLKLSSTDQVVVDMGIAHKNQAYRPALLTTKDGIDTYVSDSDVSQSLIRYTNSNGQLIFNSSDIVGTANPQVSGYLAVWVPVGASDTQDARTESSTATTADGQTLHSNAALDSQVIYESFSNFQSTPTTEAEYANVQIANNTDLYKSWGITNFEFPPQYRSSTDSSFLDSIIQNGYAFTDRYDLGFNTPTKYGTVDQLRTAIKALHATGIKAMADWVPDQIYNLTGKEVVAVQRVNNSGIYNQDSVINKTLYASQTVGGGEYQALYGGEFLDEIKKLYPSLFEKNQISTGVPMDASEKIKEWSAKYFNGTNIQGRGAYYVLKDWATNEYFKVSTSSNSSVFLPKQLTNEESNTGFISTDGGMTYYSTSGYQAKDTFIQDDKSNWYYFDKNGYMTYGFQTVNDNNYYFLPNGIELQDAILEDSKGNVYYFNQYGKQAVDGYYMLANKTWRYFDKNGVMANAGLTTVTVDGQEHIQYFDKNGIQVKGTSVKDTDGKLRYFDTDSGDMVTNRFGENTDGTWSYFGADGIAVTGAQTISGQKLFFDADGQQIKGKEATDKKGKVRYYDANSGEMITNRFEKLSDGSWAYFNKKGNIVTGAQVINGQHLFFESNGNQVKGREYTATDGKMRYYDADSGDMVTNRFERISDGSWAYFGANGVAVTGEQNINGQQLYFDANGHQVKGAAVTQADGSQKYYDANSGEMIKS
>NZ_CP015442.1|WP_081099125.1|1812346_1812610_+|helix-turn-helix-transcriptional-regulator
MNNKKGSVIKEIRKIRGISQQRLGVLIESQSMVSRIENNKTEPTDHTILLLCDALNISFEEYFSAAFGKKKQLKNPDNCFKSILSRQ
>NZ_CP015442.1|WP_010288668.1|1812545_1813229_+|XRE-family-transcriptional-regulator
MEKKNNLKTLTTVLSQYYQDNDRQKLNQLTQLLQNDTIKNPSDPFMRHYYLMSLSTLYHLDFLVASIDDQNELIDYFFNISYWQFYDLCLLANVVNMIHVERITPYIFDILKQYATNNMPTASVETVSKILINALETSIIQKKDDFTRYLLDKIKKYKFNTDDFKFQTWLLFWTGVFENNNNKVRHAYSIATYLHQNITLKNFDKFLTITQTPSPFFEDTKKDTPKS
>NZ_CP015442.1|WP_011680356.1|1813260_1814499_-|PTS-sugar-transporter-subunit-IIC
MSIKAEGEKWSAKESQDLRNEEYARKAKENAPVEFSGQTDLRLKDFFFKVLSGSAQGILIGVLPSAVMKYIIQYSGLGTTAFGANLSAILTLFTSLIPFLIGMAVALQFKMKSLDVGVVAIATAVASGSIKWAVAPKGWLNPVTGLNSVAPANVYIASGAGDVINAMIVSAIAVFVTWLVARYLKGFGSVAIILSPILVGGGVGLVGKMIAPYVGDVTTWIGQLVETFTKLAPIPMAMLIAMAFAIIIITPVSTVGIALAISLSGIGSGAAAMGVVATTIVLLINSWKVNKPGVTVAIALGAMKGMMPSVFAKPVTMLSFLLAAAISGIPVALFNIQGTPTTAGFGYIGLVSPIQSMVKDPTVPSTVMNHFINPAIAVLAWLVIPIIAGFIAQFVFSKLLKLYTPMDFQQEL
>NZ_CP015442.1|WP_011680357.1|1814659_1815655_-|D-2-hydroxyacid-dehydrogenase
MKIFAYGIRDDEKPSLEEWKAANPEIEVDYTQELLTPETAKLAEGSDSAVVYQQLDYTRETLTALANVGVTNLSLRNVGTDNIDFDAAREFNFNISNVPVYSPNAIAEHSMIQLSRLLRRTKALDAKIAKHDLRWAPTIGREMRMQTVGVIGTGHIGRVAINILKGFGAKVIAYDKYPNAELQAEGLYVDTLDELYAQADAISLYVPGVPENHHLINADAIAKMKDGVVIMNAARGNLMDIDAIIDGLNSGKISDFGMDVYENEVGLFNEDWSGKEFPDAKIADLIARENVLVTPHTAFYTTKAVLEMVHQSFDAAVAFAKGEKPAIAVEY
>NZ_CP015442.1|WP_010281711.1|1815841_1816732_-|prenyltransferase
MMTYKQFLDLVEIRVVVPSIAPLLVGLAYSQWQYARVNWVNTLLLIIATVAVHLAVNTFNRYEDNKRQKENSFLRESDDVEAITDKQVLHVAEGLALIAVLAGVIVALRTDYITWIIGIVSFLIGYFYSAGPKPITNTPFGEIVSGITMGYFIFVAQVYVNTRMVPTGNVLFQWFIVSLPLTIFIAEIMFANNIADYDEDQANDRHTLVHYIGIKNAKKIYVFWAILAFVEIILVTLVGWLPTTSYTLLILLPIIIKNARAFVNHPVKKETFILAIKNLVVVFMGMLVTLLVGILL
>NZ_CP015442.1|WP_011680358.1|1816829_1817468_-|DUF421-domain-containing-protein
MSIYLPILTKLAIGLVALIIQINVMGKGNLAPTNALDQVQNYVLGGIIGAVIYSDTITVFQFTIVLIIWTMLVMTFKFLKEHNRYVKLLIDGQPKVVIERGKVNIKNVLSSGLSANDLMFKLRSQSVYDLSQVKRAVLEINGQLTVILAGEENMKYPIIFDGQINMDVLDIIDRDESWLTDIVQNQGYDSINDIFVGEYIDGKVRLTPYESK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015442_3	3.3\|1803118\|23\|NZ_CP015442\|CRT	1803118-1803140	23	LR745207	uncultured phage genome assembly, chromosome: 1	122794-122816	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	CP043018	Escherichia coli strain 388808_gen plasmid unnamed3, complete sequence	1018-1040	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	NZ_CP039919	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence	93978-94000	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	MG986485	Escherichia phage SH2026Stx1, complete genome	59563-59585	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	KU977419	Stx1 converting phage AU5Stx1, complete genome	56370-56392	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	NC_008464	Stx2-converting phage 86, complete genome	35119-35141	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	KJ603229	Shigella phage POCJ13, complete genome	55906-55928	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	KU977420	Stx1 converting phage AU6Stx1, complete genome	55122-55144	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	AB255436	Stx2-converting phage 86 DNA, complete genome	35119-35141	2	0.913
NZ_CP015442_3	3.4\|1803163\|23\|NZ_CP015442\|CRT	1803163-1803185	23	NC_049917	Escherichia phage Lys12581Vzw, complete genome	47379-47401	2	0.913
NZ_CP015442_3	3.6\|1803253\|23\|NZ_CP015442\|CRT	1803253-1803275	23	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	410710-410732	2	0.913
NZ_CP015442_3	3.6\|1803253\|23\|NZ_CP015442\|CRT	1803253-1803275	23	NC_021906	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence	88451-88473	2	0.913
NZ_CP015442_3	3.6\|1803253\|23\|NZ_CP015442\|CRT	1803253-1803275	23	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	89121-89143	2	0.913
NZ_CP015442_3	3.6\|1803253\|23\|NZ_CP015442\|CRT	1803253-1803275	23	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	155688-155710	2	0.913
NZ_CP015442_3	3.7\|1803298\|23\|NZ_CP015442\|CRT	1803298-1803320	23	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	791717-791739	2	0.913
NZ_CP015442_2	2.5\|1663644\|30\|NZ_CP015442\|CRT	1663644-1663673	30	NZ_CP047963	Aeromonas media strain MC64 plasmid pMC64A, complete sequence	140512-140541	8	0.733
NZ_CP015442_2	2.5\|1663644\|30\|NZ_CP015442\|CRT	1663644-1663673	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	690956-690985	8	0.733
NZ_CP015442_2	2.5\|1663644\|30\|NZ_CP015442\|CRT	1663644-1663673	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	551360-551389	8	0.733
NZ_CP015442_2	2.9\|1663836\|30\|NZ_CP015442\|CRT	1663836-1663865	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1604832-1604861	8	0.733
NZ_CP015442_3	3.8\|1803343\|32\|NZ_CP015442\|CRT	1803343-1803374	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	2669-2700	10	0.688
NZ_CP015442_3	3.8\|1803343\|32\|NZ_CP015442\|CRT	1803343-1803374	32	MG543995	Staphylococcus phage UPMK_1, partial genome	2868-2899	10	0.688

1. spacer 3.3|1803118|23|NZ_CP015442|CRT matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.913

tgccatttttgccatcgacaccg	CRISPR spacer
tgccatttttgccatcgccatcg	Protospacer
***************** **.**

2. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to CP043018 (Escherichia coli strain 388808_gen plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

3. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to NZ_CP039919 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccacctttgccatcgccaccg	Protospacer
*****.*********** *****

4. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to MG986485 (Escherichia phage SH2026Stx1, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

5. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to KU977419 (Stx1 converting phage AU5Stx1, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

6. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to NC_008464 (Stx2-converting phage 86, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

7. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to KJ603229 (Shigella phage POCJ13, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

8. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to KU977420 (Stx1 converting phage AU6Stx1, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

9. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to AB255436 (Stx2-converting phage 86 DNA, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

10. spacer 3.4|1803163|23|NZ_CP015442|CRT matches to NC_049917 (Escherichia phage Lys12581Vzw, complete genome) position: , mismatch: 2, identity: 0.913

tgccatctttgccatcgacaccg	CRISPR spacer
tgccatcattgccatcgccaccg	Protospacer
******* ********* *****

11. spacer 3.6|1803253|23|NZ_CP015442|CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 2, identity: 0.913

cgccatctttgccgtcgacaccg	CRISPR spacer
cgccatctgtgccgtcgtcaccg	Protospacer
******** ******** *****

12. spacer 3.6|1803253|23|NZ_CP015442|CRT matches to NC_021906 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence) position: , mismatch: 2, identity: 0.913

cgccatctttgccgtcgacaccg	CRISPR spacer
cgccatctttgccgtcagcaccg	Protospacer
****************..*****

13. spacer 3.6|1803253|23|NZ_CP015442|CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 2, identity: 0.913

cgccatctttgccgtcgacaccg	CRISPR spacer
cgccatcattgccttcgacaccg	Protospacer
******* ***** *********

14. spacer 3.6|1803253|23|NZ_CP015442|CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 2, identity: 0.913

cgccatctttgccgtcgacaccg	CRISPR spacer
cgccatctgtgccgtcgtcaccg	Protospacer
******** ******** *****

15. spacer 3.7|1803298|23|NZ_CP015442|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.913

cgccatctttgccattgacacca	CRISPR spacer
cgccatctttgcctttgccacca	Protospacer
************* *** *****

16. spacer 2.5|1663644|30|NZ_CP015442|CRT matches to NZ_CP047963 (Aeromonas media strain MC64 plasmid pMC64A, complete sequence) position: , mismatch: 8, identity: 0.733

gggggcactttctggcgtgctttcgggggc	CRISPR spacer
ggcggcacttgctggcgtgctttacatagt	Protospacer
** ******* ************  . .*.

17. spacer 2.5|1663644|30|NZ_CP015442|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

gggggcactttctggcgtgctttcgggggc	CRISPR spacer
ctcgattctttccggcgtgctgtcgggggc	Protospacer
   *.. *****.******** ********

18. spacer 2.5|1663644|30|NZ_CP015442|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.733

gggggcactttctggcgtgctttcgggggc	CRISPR spacer
ctcgattctttccggcgtgctgtcgggggc	Protospacer
   *.. *****.******** ********

19. spacer 2.9|1663836|30|NZ_CP015442|CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggagcactttctggcgtgctttccggcgt	CRISPR spacer
tgccaatctttccggcgtgctttccgccgt	Protospacer
 *  .  *****.************* ***

20. spacer 3.8|1803343|32|NZ_CP015442|CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 10, identity: 0.688

tgccatctttaccattgataccgttcacgcca	CRISPR spacer
gtccctctataccattgataccgttttttctt	Protospacer
  ** *** ****************. . *.

21. spacer 3.8|1803343|32|NZ_CP015442|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 10, identity: 0.688

tgccatctttaccattgataccgttcacgcca	CRISPR spacer
tagtatctctaccattgataccgctcaacttt	Protospacer
*. .****.**************.***  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57869 : 74924

Staphylococcus_phage(50.0%)

protease,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010288466.1\|57869_58040_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011679054.1\|58211_58409_+	hypothetical protein	NA	NA	NA	NA
WP_010293490.1\|59113_59359_+	hypothetical protein	NA	NA	NA	NA
WP_084014870.1\|59397_59778_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011679055.1\|59955_61512_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-21	32.5
WP_011679056.1\|61511_62633_+	ABC transporter permease	NA	NA	NA	NA
WP_031296082.1\|62634_63591_+	ABC transporter permease	NA	NA	NA	NA
WP_059442367.1\|63630_64545_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_011679059.1\|64660_65416_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_002815468.1\|65408_66308_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011679060.1\|66304_67309_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_084014871.1\|67775_68363_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_061399584.1\|68420_69158_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_061399583.1\|70214_71564_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_084014872.1\|71581_73729_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	2.8e-42	27.6
WP_010287032.1\|73959_74136_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_010287029.1\|74166_74328_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_011679064.1\|74324_74630_+	hypothetical protein	NA	NA	NA	NA
WP_011679065.1\|74786_74924_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA

DBSCAN-SWA_2

336956 : 345126

Leuconostoc_phage(100.0%)

integrase

attL 340141:340154|attR 345474:345487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157111297.1\|336956_337112_-	hypothetical protein	A0A097BYK3	Leuconostoc_phage	3.6e-16	82.4
WP_084014908.1\|337123_337555_-	hypothetical protein	A0A097BYJ1	Leuconostoc_phage	4.6e-77	98.6
WP_143470130.1\|337555_337924_-	helix-turn-helix transcriptional regulator	A0A097BYI9	Leuconostoc_phage	9.7e-52	86.9
WP_084014906.1\|338165_338432_+	hypothetical protein	A0A097BYE6	Leuconostoc_phage	2.0e-27	81.2
WP_084014905.1\|338428_338692_+	hypothetical protein	NA	NA	NA	NA
WP_050884194.1\|338792_338951_+	hypothetical protein	NA	NA	NA	NA
WP_084014904.1\|339027_339264_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_084014903.1\|339280_339595_+	hypothetical protein	A0A097BYJ5	Leuconostoc_phage	3.4e-37	70.2
WP_050891394.1\|339591_339912_+	hypothetical protein	A0A097BYF1	Leuconostoc_phage	1.3e-47	99.0
WP_084014902.1\|339914_340121_+	hypothetical protein	A0A097BYF2	Leuconostoc_phage	4.5e-30	98.5
WP_009999907.1\|340117_340300_+	hypothetical protein	A0A097BYL1	Leuconostoc_phage	1.2e-23	98.3
340141:340154	attL	NA	NA	NA	NA
WP_084015106.1\|340302_341121_+	DNA replication protein	NA	NA	NA	NA
WP_084015107.1\|341107_342535_+	hypothetical protein	NA	NA	NA	NA
WP_084014894.1\|342872_343217_+	hypothetical protein	A0A097BYH9	Leuconostoc_phage	4.4e-14	41.6
WP_084014893.1\|343280_343688_+	hypothetical protein	A0A097BYD6	Leuconostoc_phage	1.1e-45	69.4
WP_084014892.1\|343684_343885_+	hypothetical protein	A0A097BYD9	Leuconostoc_phage	1.5e-27	83.3
WP_084014891.1\|344004_345126_+\|integrase	site-specific integrase	A0A097BYJ7	Leuconostoc_phage	2.9e-171	76.1
345474:345487	attR	NA	NA	NA	NA

DBSCAN-SWA_3

719734 : 728423

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004164276.1\|719734_720220_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	45.6
WP_084014557.1\|720216_721326_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_038534119.1\|721309_722059_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.2e-35	35.5
WP_004164272.1\|722060_722330_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_059442060.1\|722326_722995_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_084014558.1\|722999_725216_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-143	38.9
WP_014324502.1\|725194_726805_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.4e-46	31.3
WP_011679515.1\|726801_727839_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HPW9	Synechococcus_phage	1.1e-57	39.3
WP_084014559.1\|727832_728423_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-28	40.9

DBSCAN-SWA_4

1043966 : 1114177

Lactobacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085775740.1\|1043966_1044755_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.2e-24	33.0
WP_041775236.1\|1045028_1045298_+	transcriptional regulator	NA	NA	NA	NA
WP_011679747.1\|1046148_1047501_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_011679748.1\|1047595_1049854_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_011679749.1\|1049910_1050894_+	galactose mutarotase	NA	NA	NA	NA
WP_011679750.1\|1050896_1051568_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_011679752.1\|1052174_1052441_+	hypothetical protein	NA	NA	NA	NA
WP_084015031.1\|1052615_1053224_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.9e-46	48.0
WP_011679753.1\|1053242_1053842_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011679754.1\|1055004_1055310_+	hypothetical protein	NA	NA	NA	NA
WP_084015030.1\|1055388_1055769_+	hypothetical protein	NA	NA	NA	NA
WP_011679756.1\|1056252_1057146_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_084015029.1\|1057288_1058917_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_059442524.1\|1058933_1060196_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_011679759.1\|1061245_1061488_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	3.1e-06	36.1
WP_041775238.1\|1061494_1062337_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	6.7e-32	36.8
WP_042253158.1\|1062513_1062756_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	4.0e-06	36.1
WP_084015103.1\|1062959_1064993_+	KUP/HAK/KT family potassium transporter	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	4.0e-62	33.5
WP_041775239.1\|1065112_1065325_+	hypothetical protein	NA	NA	NA	NA
WP_084014983.1\|1066653_1067835_+	DUF3578 domain-containing protein	NA	NA	NA	NA
WP_114666291.1\|1067868_1068834_+	ATPase	NA	NA	NA	NA
WP_084014984.1\|1069442_1069889_-	ribonuclease H	NA	NA	NA	NA
WP_011679767.1\|1070126_1071653_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_011679768.1\|1071653_1072625_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-23	31.7
WP_084014985.1\|1072702_1074034_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_080506299.1\|1074278_1074800_+	hypothetical protein	NA	NA	NA	NA
WP_084014986.1\|1075884_1076511_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_084014987.1\|1076881_1077223_+	hypothetical protein	NA	NA	NA	NA
WP_084014988.1\|1077397_1077679_+	hypothetical protein	NA	NA	NA	NA
WP_084014989.1\|1081226_1083749_+	type II restriction endonuclease	A0A2R2ZGH5	Clostridioides_phage	8.0e-20	24.3
WP_084014990.1\|1084105_1085023_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.7e-41	38.4
WP_084014991.1\|1093788_1094340_+	hypothetical protein	NA	NA	NA	NA
WP_084014992.1\|1094341_1095157_+	hypothetical protein	NA	NA	NA	NA
WP_084014993.1\|1095198_1095951_+	N-6 DNA methylase	NA	NA	NA	NA
WP_084014994.1\|1096221_1096986_+	hypothetical protein	NA	NA	NA	NA
WP_084014995.1\|1097018_1097966_+	hypothetical protein	NA	NA	NA	NA
WP_010007026.1\|1097978_1098206_+	hypothetical protein	NA	NA	NA	NA
WP_084014996.1\|1098208_1098583_+	MFS transporter permease	NA	NA	NA	NA
WP_084015089.1\|1098714_1099245_+	hypothetical protein	NA	NA	NA	NA
WP_084015090.1\|1099261_1101253_+	hypothetical protein	NA	NA	NA	NA
WP_084015091.1\|1101249_1102392_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_084015092.1\|1102409_1102934_+	hypothetical protein	NA	NA	NA	NA
WP_084015093.1\|1102923_1103490_+	hypothetical protein	NA	NA	NA	NA
WP_084015094.1\|1103502_1103937_+	thiol-disulfide isomerase	NA	NA	NA	NA
WP_085775741.1\|1103940_1106448_+	conjugal transfer protein	A0A1S5SF64	Streptococcus_phage	3.3e-50	24.8
WP_085775742.1\|1106455_1106884_-	YjdF family protein	NA	NA	NA	NA
WP_085775743.1\|1107079_1107403_+	hypothetical protein	NA	NA	NA	NA
WP_085775744.1\|1107395_1108766_+	cell division protein FtsK	NA	NA	NA	NA
WP_084015053.1\|1110193_1110487_+	hypothetical protein	NA	NA	NA	NA
WP_084015052.1\|1110871_1112485_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	3.3e-19	24.6
WP_084015051.1\|1112498_1112909_+	hypothetical protein	NA	NA	NA	NA
WP_084015050.1\|1113013_1114177_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.3e-28	29.1

DBSCAN-SWA_5

1146441 : 1177403

Staphylococcus_prophage(42.86%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084015072.1\|1146441_1147596_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.3e-29	29.1
WP_084015073.1\|1147751_1149479_+	AAA family ATPase	NA	NA	NA	NA
WP_084015074.1\|1149478_1150987_+	ATP-dependent helicase	NA	NA	NA	NA
WP_084015117.1\|1151092_1152010_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	7.3e-40	38.1
WP_080519560.1\|1153292_1154210_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.6e-42	39.4
WP_085775748.1\|1154206_1154386_-	hypothetical protein	NA	NA	NA	NA
WP_143470147.1\|1154529_1159482_-	hypothetical protein	NA	NA	NA	NA
WP_085775749.1\|1159775_1160546_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-35	35.9
WP_084014953.1\|1160602_1160878_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.6e-06	39.3
WP_085775750.1\|1160993_1162253_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_084014952.1\|1162748_1163159_-	hypothetical protein	NA	NA	NA	NA
WP_084014951.1\|1163230_1163491_-	hypothetical protein	NA	NA	NA	NA
WP_084014955.1\|1163567_1165238_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	4.2e-25	26.1
WP_004912974.1\|1165639_1165936_-	hypothetical protein	NA	NA	NA	NA
WP_084014950.1\|1166214_1166511_-	hypothetical protein	NA	NA	NA	NA
WP_084014949.1\|1166539_1166851_-	hypothetical protein	NA	NA	NA	NA
WP_084014948.1\|1166850_1168221_-	cell division protein FtsK	NA	NA	NA	NA
WP_084014947.1\|1168233_1168545_-	hypothetical protein	NA	NA	NA	NA
WP_084014946.1\|1168793_1169138_-	hypothetical protein	NA	NA	NA	NA
WP_084014945.1\|1169124_1169460_-	hypothetical protein	NA	NA	NA	NA
WP_084014944.1\|1169473_1171972_-	conjugal transfer protein	A0A1S5SF64	Streptococcus_phage	1.9e-42	23.6
WP_084014943.1\|1171983_1172427_-	thiol-disulfide isomerase	NA	NA	NA	NA
WP_084014942.1\|1172439_1173006_-	hypothetical protein	NA	NA	NA	NA
WP_084014941.1\|1172995_1173520_-	hypothetical protein	NA	NA	NA	NA
WP_084014940.1\|1173535_1174708_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_084014954.1\|1174707_1176735_-	hypothetical protein	NA	NA	NA	NA
WP_084014939.1\|1176797_1177403_-\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA

DBSCAN-SWA_6

1288022 : 1387423

109

Leuconostoc_phage(28.3%)

capsid,terminase,portal,tail,integrase,transposase,tRNA

attL 1292290:1292306|attR 1368567:1368583

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106810493.1\|1288022_1288133_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011679948.1\|1288203_1288863_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_025268170.1\|1288875_1290162_-	ABC transporter permease	NA	NA	NA	NA
WP_014324830.1\|1290151_1290892_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.1e-13	28.3
WP_014324831.1\|1291054_1291477_+	HIT family protein	NA	NA	NA	NA
WP_084014806.1\|1291511_1291754_+	hypothetical protein	NA	NA	NA	NA
WP_084014805.1\|1291809_1292784_+	peptidylprolyl isomerase	NA	NA	NA	NA
1292290:1292306	attL	NA	NA	NA	NA
WP_084014804.1\|1292863_1294069_-	MFS transporter	NA	NA	NA	NA
WP_050895067.1\|1294080_1295280_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_084014803.1\|1295292_1296231_-	hydroxyacid dehydrogenase	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	2.0e-24	29.8
WP_084014802.1\|1296249_1296972_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-35	39.5
WP_011679957.1\|1296964_1297624_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_084014801.1\|1298475_1299672_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2I2L687	Orpheovirus	1.6e-15	26.0
WP_011679961.1\|1301177_1301915_-	3-oxoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.2e-12	26.5
WP_011679962.1\|1301911_1302469_-	QueT transporter family protein	NA	NA	NA	NA
WP_011679963.1\|1302542_1303841_-	RNA polymerase sigma factor RpoD	M4SMP8	Cyanophage	2.6e-38	34.5
WP_050884330.1\|1303890_1305753_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.4e-45	31.6
WP_010279016.1\|1305973_1306267_-	hypothetical protein	NA	NA	NA	NA
WP_084014800.1\|1306288_1307131_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_011679990.1\|1307132_1307996_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_084014799.1\|1308021_1308516_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_011679992.1\|1308531_1308963_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_050884329.1\|1309145_1309721_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_084014798.1\|1309863_1311000_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_050895076.1\|1311286_1312153_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_050884811.1\|1312207_1314085_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	6.5e-59	32.2
WP_050884812.1\|1314178_1315117_+	dihydroorotate oxidase	A0A1V0SH91	Hokovirus	5.5e-59	42.5
WP_084014797.1\|1315146_1316403_-	acetate kinase	NA	NA	NA	NA
WP_011680000.1\|1316559_1317423_+	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	5.9e-07	38.8
WP_011680001.1\|1317422_1317722_+	hypothetical protein	NA	NA	NA	NA
WP_084014796.1\|1317781_1319974_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_010290893.1\|1320096_1320528_-	universal stress protein	NA	NA	NA	NA
WP_010287499.1\|1320869_1321346_-	MscL family protein	NA	NA	NA	NA
WP_084014795.1\|1321506_1323804_-	carbohydrate-binding domain-containing protein	NA	NA	NA	NA
WP_011680004.1\|1324236_1325151_+	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	1.1e-59	41.0
WP_050884504.1\|1325161_1326301_+	PLP-dependent transferase	NA	NA	NA	NA
WP_084014794.1\|1326314_1326809_+	serine acetyltransferase	NA	NA	NA	NA
WP_084014793.1\|1327503_1327764_-	hypothetical protein	NA	NA	NA	NA
WP_084014792.1\|1327845_1328046_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.5e-22	77.3
WP_084014791.1\|1328423_1329353_+	hypothetical protein	A0A059NT88	Lactococcus_phage	6.9e-70	43.6
WP_084014790.1\|1329397_1329703_-	hypothetical protein	NA	NA	NA	NA
WP_084014789.1\|1329712_1330804_-	1,4-beta-N-acetylmuramidase	E3W8H6	Leuconostoc_phage	1.4e-199	95.3
WP_084014788.1\|1330823_1331207_-	hypothetical protein	A0A2K9V3M2	Faecalibacterium_phage	6.4e-06	33.0
WP_084014787.1\|1331217_1333746_-	SGNH/GDSL hydrolase family protein	A0A0D3MJY6	Leuconostoc_phage	6.7e-285	73.7
WP_084014786.1\|1333738_1334179_-	hypothetical protein	NA	NA	NA	NA
WP_084014785.1\|1334180_1335287_-	hypothetical protein	A0A0B5CYL4	Listeria_phage	1.1e-42	36.0
WP_084014784.1\|1335286_1336126_-\|tail	phage tail family protein	NA	NA	NA	NA
WP_084014783.1\|1336115_1340990_-	CHAP domain-containing protein	A0A2P0VJB7	Streptococcus_phage	1.7e-175	36.6
WP_084014782.1\|1341011_1341638_-	hypothetical protein	U3PFU8	Lactobacillus_phage	9.5e-15	31.5
WP_084014781.1\|1341637_1342045_-	hypothetical protein	NA	NA	NA	NA
WP_084014780.1\|1342163_1342622_-\|capsid	capsid protein	O03972	Lactobacillus_phage	3.3e-41	58.6
WP_084014779.1\|1342623_1343022_-\|capsid	capsid protein	A0A1S5SA43	Streptococcus_phage	7.9e-07	31.5
WP_084014778.1\|1343021_1343378_-\|capsid	capsid protein	O03933	Lactobacillus_phage	6.6e-13	39.8
WP_080987699.1\|1343377_1343731_-\|capsid	capsid protein	O03932	Lactobacillus_phage	2.6e-22	46.4
WP_084014777.1\|1343723_1344149_-	hypothetical protein	NA	NA	NA	NA
WP_084014776.1\|1344221_1345166_-\|capsid	N4-gp56 family major capsid protein	A8ASJ6	Listeria_phage	9.4e-75	53.6
WP_050884094.1\|1345169_1345799_-	scaffolding protein	Q9T1B8	Listeria_phage	2.7e-33	47.7
WP_084014775.1\|1346016_1347156_-\|capsid	capsid protein	O03929	Lactobacillus_phage	3.5e-92	54.3
WP_084014774.1\|1347152_1348688_-\|portal	phage portal protein	O03928	Lactobacillus_phage	1.8e-123	48.0
WP_084014773.1\|1348747_1350043_-\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.4e-129	54.4
WP_084014772.1\|1350029_1350536_-\|terminase	terminase small subunit	A0A097BYC9	Leuconostoc_phage	1.7e-51	73.0
WP_084014771.1\|1350591_1351200_-	hypothetical protein	NA	NA	NA	NA
WP_084014770.1\|1351250_1351430_-	hypothetical protein	NA	NA	NA	NA
WP_084014769.1\|1351440_1352664_-	hypothetical protein	A0A097BYC5	Leuconostoc_phage	5.1e-198	84.0
WP_084014768.1\|1353316_1353709_-	DUF722 domain-containing protein	E3W8E2	Leuconostoc_phage	8.4e-62	93.1
WP_084014767.1\|1353719_1353905_-	hypothetical protein	E3W8E1	Leuconostoc_phage	1.3e-25	91.8
WP_084014766.1\|1353931_1354252_-	hypothetical protein	A0A097BYB9	Leuconostoc_phage	2.6e-13	42.0
WP_084014765.1\|1354657_1355227_-	hypothetical protein	E3W8D8	Leuconostoc_phage	8.6e-31	42.1
WP_084014764.1\|1355299_1356028_-	SAM-dependent DNA methyltransferase	A0A097BYG1	Leuconostoc_phage	3.3e-136	99.2
WP_084014763.1\|1356024_1356306_-	hypothetical protein	NA	NA	NA	NA
WP_084014762.1\|1356472_1356910_-	RusA family crossover junction endodeoxyribonuclease	A0A097BYB3	Leuconostoc_phage	2.3e-76	96.6
WP_084014761.1\|1357016_1357718_-	hypothetical protein	E3W8D3	Leuconostoc_phage	6.5e-113	81.5
WP_084014760.1\|1357873_1358647_-	AAA family ATPase	D2KRE5	Lactobacillus_phage	3.0e-34	40.8
WP_084014759.1\|1358643_1359399_-	DNA replication protein	D7RWG1	Brochothrix_phage	1.6e-85	69.6
WP_084014758.1\|1359537_1360194_-	hypothetical protein	NA	NA	NA	NA
WP_084014757.1\|1360190_1361105_-	recombinase	E3W8C7	Leuconostoc_phage	4.6e-34	33.6
WP_084014756.1\|1361107_1361446_-	hypothetical protein	NA	NA	NA	NA
WP_084014755.1\|1361720_1362026_-	hypothetical protein	NA	NA	NA	NA
WP_084014754.1\|1362094_1362304_+	hypothetical protein	NA	NA	NA	NA
WP_157111298.1\|1362281_1362428_-	hypothetical protein	NA	NA	NA	NA
WP_084014753.1\|1362444_1363242_-	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	2.8e-72	54.0
WP_050891601.1\|1363255_1363519_-	hypothetical protein	NA	NA	NA	NA
WP_084014752.1\|1363948_1364779_-	hypothetical protein	A0A1C8E9A5	Bacillus_phage	7.8e-49	41.9
WP_084014751.1\|1364919_1365144_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	2.3e-16	59.5
WP_084014750.1\|1365140_1365332_-	hypothetical protein	NA	NA	NA	NA
WP_084014749.1\|1365348_1365582_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_084014748.1\|1365751_1366429_+	helix-turn-helix domain-containing protein	A0A097BY95	Leuconostoc_phage	1.5e-61	54.6
WP_084014747.1\|1366493_1367099_+	hypothetical protein	A0A097BY93	Leuconostoc_phage	4.6e-06	65.2
WP_084014746.1\|1367276_1368353_+\|integrase	site-specific integrase	Q9ZXG6	Leuconostoc_phage	1.3e-40	31.7
WP_002814789.1\|1368412_1368688_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.6e-27	70.8
1368567:1368583	attR	NA	NA	NA	NA
WP_011680007.1\|1368861_1370172_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_084014745.1\|1370246_1371437_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_011680009.1\|1371531_1372206_-	(d)CMP kinase	NA	NA	NA	NA
WP_084014744.1\|1372223_1372781_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_011680010.1\|1372854_1373445_-	ECF transporter S component	NA	NA	NA	NA
WP_011680011.1\|1373708_1374458_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_084014743.1\|1374450_1375050_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.3e-15	40.2
WP_010293839.1\|1375042_1375819_-	condensin subunit ScpA	A0A1B1IVW1	uncultured_Mediterranean_phage	2.7e-11	33.6
WP_010293841.1\|1375785_1376160_-	hypothetical protein	NA	NA	NA	NA
WP_084014742.1\|1376165_1377062_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.2e-42	34.7
WP_084014741.1\|1377058_1377922_-	RNA-binding protein	NA	NA	NA	NA
WP_084014740.1\|1378010_1378457_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.4e-15	36.7
WP_011680015.1\|1378539_1378725_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_084014739.1\|1378861_1380130_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.0e-44	28.1
WP_060461414.1\|1380269_1381817_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_084014738.1\|1381918_1383325_+	amino acid permease	NA	NA	NA	NA
WP_002814812.1\|1383381_1384248_-	YitT family protein	NA	NA	NA	NA
WP_025268198.1\|1384349_1386125_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_060461415.1\|1386121_1387423_-\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	9.4e-25	25.5

DBSCAN-SWA_7

1715208 : 1743055

Leuconostoc_phage(84.62%)

holin,capsid,terminase,head,portal,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060461494.1\|1715208_1715682_-\|holin	holin	E3W8H7	Leuconostoc_phage	6.2e-35	67.8
WP_084014506.1\|1715691_1716783_-	1,4-beta-N-acetylmuramidase	E3W8H6	Leuconostoc_phage	2.3e-186	88.7
WP_084014507.1\|1716802_1717180_-	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	1.4e-08	34.1
WP_084014508.1\|1717185_1717419_-	hypothetical protein	E3W8H4	Leuconostoc_phage	4.1e-32	92.2
WP_084014509.1\|1717567_1717783_-	hypothetical protein	NA	NA	NA	NA
WP_084014510.1\|1717779_1723485_-	hypothetical protein	E3W8G7	Leuconostoc_phage	1.1e-229	92.8
WP_084014511.1\|1723469_1724195_-	hypothetical protein	E3W8G6	Leuconostoc_phage	2.7e-82	96.3
WP_084014512.1\|1724198_1727081_-	hypothetical protein	E3W8G4	Leuconostoc_phage	4.3e-280	88.2
WP_084014513.1\|1727337_1727700_-	hypothetical protein	E3W8G2	Leuconostoc_phage	2.3e-61	96.7
WP_084014514.1\|1727750_1728329_-\|tail	phage tail protein	E3W8G1	Leuconostoc_phage	1.2e-96	93.2
WP_010276380.1\|1728330_1728663_-	hypothetical protein	E3W8G0	Leuconostoc_phage	1.8e-57	100.0
WP_084014515.1\|1728659_1729016_-	hypothetical protein	E3W8F9	Leuconostoc_phage	3.1e-23	85.0
WP_084014516.1\|1729002_1729311_-	hypothetical protein	E3W8F7	Leuconostoc_phage	2.4e-48	92.2
WP_084014517.1\|1729300_1729615_-\|head,tail	phage gp6-like head-tail connector protein	E3W8F6	Leuconostoc_phage	1.2e-47	93.3
WP_084014518.1\|1729655_1729913_-	hypothetical protein	NA	NA	NA	NA
WP_084014519.1\|1729803_1731012_-\|capsid	phage major capsid protein	E3W8F5	Leuconostoc_phage	1.2e-188	88.5
WP_084014520.1\|1731008_1731575_-\|head,protease	HK97 family phage prohead protease	E3W8F4	Leuconostoc_phage	2.0e-40	96.6
WP_084014521.1\|1731552_1732710_-\|portal	phage portal protein	E3W8F3	Leuconostoc_phage	5.2e-160	98.3
WP_143470126.1\|1732706_1732886_-	hypothetical protein	E3W8F1	Leuconostoc_phage	2.7e-23	98.3
WP_084014523.1\|1732888_1734643_-\|terminase	terminase large subunit	E3W8F0	Leuconostoc_phage	0.0e+00	94.5
WP_084014524.1\|1734904_1735411_-\|terminase	phage terminase small subunit P27 family	E3W8E9	Leuconostoc_phage	7.8e-68	87.0
WP_084014525.1\|1735579_1736071_-	HNH endonuclease	E3W8E8	Leuconostoc_phage	5.0e-88	96.3
WP_084014526.1\|1736060_1736336_-	hypothetical protein	NA	NA	NA	NA
WP_084014527.1\|1736371_1737082_-	hypothetical protein	NA	NA	NA	NA
WP_084014528.1\|1737132_1737312_-	hypothetical protein	NA	NA	NA	NA
WP_084014529.1\|1737341_1738565_-	hypothetical protein	A0A097BYC5	Leuconostoc_phage	4.6e-130	57.9
WP_084014530.1\|1738965_1739358_-	DUF722 domain-containing protein	E3W8E2	Leuconostoc_phage	1.0e-62	92.3
WP_084014531.1\|1739368_1739554_-	hypothetical protein	E3W8E1	Leuconostoc_phage	4.7e-23	83.6
WP_084014532.1\|1739793_1740135_-	hypothetical protein	A0A1B1SDW5	Weissella_phage	1.9e-17	47.8
WP_084014533.1\|1740241_1740481_-	hypothetical protein	NA	NA	NA	NA
WP_084014534.1\|1740603_1740813_-	hypothetical protein	NA	NA	NA	NA
WP_084014535.1\|1741132_1742344_-	hypothetical protein	X2KU14	Streptococcus_phage	7.4e-40	34.0
WP_084014536.1\|1742344_1743055_-	bifunctional DNA primase/polymerase	B3GVY7	Streptococcus_phage	1.6e-10	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015442

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection