CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017380	Lactiplantibacillus plantarum strain TMW 1.1623 plasmid pL11623-1, complete sequence	0 crisprs	NA	0
NZ_CP017381	Lactiplantibacillus plantarum strain TMW 1.1623 plasmid pL11623-2, complete sequence	0 crisprs	NA	0
NZ_CP017379	Lactiplantibacillus plantarum strain TMW 1.1623 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh	5
NZ_CP017383	Lactiplantibacillus plantarum strain TMW 1.1623 plasmid pL11623-4	0 crisprs	NA	0
NZ_CP017382	Lactiplantibacillus plantarum strain TMW 1.1623 plasmid pL11623-3, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

317369 : 425279

100

Tupanvirus(18.18%)

protease,bacteriocin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057138436.1\|317369_317933_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003641929.1\|318126_318795_+	ribose 5-phosphate isomerase A	NA	NA	NA	NA
WP_003641930.1\|318952_320458_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003643763.1\|320722_321091_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_003641932.1\|321203_321713_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_003641933.1\|321743_322940_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_003641934.1\|323049_323520_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_057138437.1\|323538_323994_+	hypothetical protein	NA	NA	NA	NA
WP_003641936.1\|324097_324670_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_025015650.1\|324835_325756_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_024971424.1\|325892_326804_+	oxidoreductase	NA	NA	NA	NA
WP_003641939.1\|327693_328140_-	hypothetical protein	NA	NA	NA	NA
WP_003641940.1\|328377_329904_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_003641941.1\|329904_330876_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.7
WP_024971425.1\|330953_332285_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003643773.1\|332750_334268_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_003641944.1\|334282_336112_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
WP_003641945.1\|336126_336849_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.2e-30	31.9
WP_003641946.1\|337435_341119_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_057704868.1\|341120_342848_+	pre-toxin TG domain-containing protein	NA	NA	NA	NA
WP_003641948.1\|342844_343762_+	hypothetical protein	NA	NA	NA	NA
WP_003641949.1\|343805_344069_+	hypothetical protein	NA	NA	NA	NA
WP_003641950.1\|344180_344459_+	hypothetical protein	NA	NA	NA	NA
WP_003641952.1\|344838_345225_+	hypothetical protein	NA	NA	NA	NA
WP_003641954.1\|345674_345866_+	hypothetical protein	NA	NA	NA	NA
WP_114071742.1\|346068_346215_+	glycohydrolase toxin TNT-related protein	NA	NA	NA	NA
WP_003641956.1\|346291_346699_+	immunity 63 family protein	NA	NA	NA	NA
WP_003641960.1\|347969_348245_+	hypothetical protein	NA	NA	NA	NA
WP_003641962.1\|348626_349244_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_003641963.1\|349247_350402_-	MFS transporter	NA	NA	NA	NA
WP_011100993.1\|350405_351197_-	HAD family hydrolase	NA	NA	NA	NA
WP_003641965.1\|351267_352140_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_057138741.1\|352299_353115_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_011100994.1\|353640_355017_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_057138742.1\|355061_356246_+	cation:proton antiporter	NA	NA	NA	NA
WP_003641969.1\|356630_356834_+	hypothetical protein	NA	NA	NA	NA
WP_003641971.1\|357245_357914_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003641972.1\|357910_358084_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnK	NA	NA	NA	NA
WP_003641973.1\|358114_358282_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnJ	NA	NA	NA	NA
WP_003641974.1\|359143_359344_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003641975.1\|359471_359639_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003641976.1\|359756_360956_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_003641977.1\|360986_361733_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011100998.1\|362947_364276_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_011100999.1\|364276_365020_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_003641982.1\|365138_365882_+	response regulator transcription factor	NA	NA	NA	NA
WP_003646470.1\|366186_366960_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003643811.1\|367058_367217_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnF	NA	NA	NA	NA
WP_003641985.1\|367240_367411_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnE	NA	NA	NA	NA
WP_085762533.1\|367677_369828_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	5.2e-44	27.7
WP_003641987.1\|369843_371220_+	HlyD family secretion protein	NA	NA	NA	NA
WP_003641990.1\|372066_372735_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_057138653.1\|372821_373502_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003641992.1\|373595_374282_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003641993.1\|374419_374623_+	hypothetical protein	NA	NA	NA	NA
WP_003641994.1\|374717_377027_-	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_003643814.1\|377285_378062_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_003643815.1\|378500_379517_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003641997.1\|379924_380635_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003641998.1\|380707_382069_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003641999.1\|382075_382264_+	hypothetical protein	NA	NA	NA	NA
WP_003642000.1\|382253_382676_+	DUF3284 domain-containing protein	NA	NA	NA	NA
WP_003643816.1\|382898_384254_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003642002.1\|384271_385708_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	9.7e-31	25.5
WP_003642003.1\|385828_386725_+	ROK family protein	NA	NA	NA	NA
WP_003642004.1\|386874_387621_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003643818.1\|387733_388747_+\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
WP_003642006.1\|389200_390334_+	hypothetical protein	NA	NA	NA	NA
WP_003643820.1\|390338_391133_+	hypothetical protein	NA	NA	NA	NA
WP_003642008.1\|391301_392219_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_003642009.1\|392264_393539_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_003642010.1\|393531_394491_+	hypothetical protein	NA	NA	NA	NA
WP_003642011.1\|394512_395217_+	NAD-dependent protein deacylase	NA	NA	NA	NA
WP_057138652.1\|395216_396059_+	DUF72 domain-containing protein	NA	NA	NA	NA
WP_080379102.1\|396655_397045_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_057138650.1\|397366_399418_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.0e-90	35.8
WP_057138649.1\|399650_400835_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_003642017.1\|400957_401734_+	TatD family hydrolase	NA	NA	NA	NA
WP_011101014.1\|401720_402284_+	ribonuclease M5	NA	NA	NA	NA
WP_003642019.1\|402280_403171_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003642020.1\|403275_403527_+	Veg family protein	NA	NA	NA	NA
WP_003642021.1\|403659_404526_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003642022.1\|404835_405780_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003642023.1\|406048_406747_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.2e-15	27.8
WP_003646500.1\|406739_407537_+	metal ABC transporter permease	NA	NA	NA	NA
WP_003642028.1\|408615_409158_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_003642029.1\|409172_409436_+	hypothetical protein	NA	NA	NA	NA
WP_057138648.1\|409928_410765_+	pur operon repressor	NA	NA	NA	NA
WP_003642031.1\|410833_412216_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L140	Tupanvirus	5.7e-28	33.2
WP_003642032.1\|412451_413276_+	serine hydrolase	NA	NA	NA	NA
WP_003643830.1\|413641_414622_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	4.9e-42	36.3
WP_003642034.1\|414910_415933_+	YdcF family protein	NA	NA	NA	NA
WP_024971609.1\|416015_417002_+	hypothetical protein	NA	NA	NA	NA
WP_057138647.1\|417170_417980_-	sugar-phosphatase	NA	NA	NA	NA
WP_171786060.1\|417999_419358_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	5.2e-26	32.9
WP_024971479.1\|419366_420299_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_003642040.1\|420661_421102_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_057138646.1\|421146_421755_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_003642042.1\|421927_423541_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-143	49.9
WP_003646511.1\|424007_425279_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.5e-96	43.7

DBSCAN-SWA_2

1126592 : 1195334

Lactobacillus_phage(82.22%)

head,protease,capsid,transposase,integrase,terminase,portal,tRNA,tail

attL 1132302:1132318|attR 1173731:1173747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033608558.1\|1126592_1127279_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003643149.1\|1127950_1128427_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003643148.1\|1128543_1129056_-	hypothetical protein	NA	NA	NA	NA
WP_003643147.1\|1129170_1129458_+	hypothetical protein	NA	NA	NA	NA
WP_057138737.1\|1129522_1131790_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.9e-119	31.6
1132302:1132318	attL	NA	NA	NA	NA
WP_057138738.1\|1132434_1133571_-\|integrase	site-specific integrase	E9LUS1	Lactobacillus_phage	2.2e-211	98.4
WP_121530114.1\|1134650_1135493_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	3.7e-155	98.2
WP_002816285.1\|1135546_1135798_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_053338952.1\|1136067_1136268_-	hypothetical protein	E9LUS6	Lactobacillus_phage	2.5e-25	97.0
WP_053267125.1\|1136568_1137444_-	hypothetical protein	NA	NA	NA	NA
WP_057138663.1\|1137572_1138247_-	LexA family transcriptional regulator	D7RWL5	Brochothrix_phage	8.0e-52	44.6
WP_057138664.1\|1138415_1138664_+	transcriptional regulator	A0A0P0IX93	Lactobacillus_phage	4.0e-17	61.4
WP_057138665.1\|1138679_1139387_+	Rha family transcriptional regulator	D2IYT0	Enterococcus_phage	1.9e-64	59.9
WP_057138666.1\|1139398_1139608_+	hypothetical protein	NA	NA	NA	NA
WP_155430106.1\|1139620_1139782_+	hypothetical protein	NA	NA	NA	NA
WP_057138667.1\|1139778_1139988_-	hypothetical protein	NA	NA	NA	NA
WP_057138668.1\|1140080_1140410_+	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	1.4e-49	84.4
WP_057138669.1\|1140499_1140748_+	hypothetical protein	E9LUT6	Lactobacillus_phage	2.5e-35	83.0
WP_057138670.1\|1140750_1140951_+	hypothetical protein	E9LUT7	Lactobacillus_phage	2.9e-26	87.9
WP_162985090.1\|1141128_1141299_+	hypothetical protein	NA	NA	NA	NA
WP_057138671.1\|1141298_1142159_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	7.1e-37	33.7
WP_057138672.1\|1142158_1142785_+	ERF family protein	D7RWM8	Brochothrix_phage	1.0e-13	37.4
WP_057138673.1\|1142781_1143243_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	3.7e-40	71.8
WP_003638309.1\|1143257_1143950_+	hypothetical protein	E9LUU3	Lactobacillus_phage	5.0e-118	89.1
WP_057138674.1\|1143991_1144828_+	helix-turn-helix domain-containing protein	U5U793	Lactobacillus_phage	1.9e-39	43.5
WP_057138675.1\|1144831_1145140_+	hypothetical protein	E9LUN7	Lactobacillus_phage	3.5e-47	92.2
WP_057138676.1\|1145414_1145843_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	8.3e-63	82.4
WP_033098961.1\|1146512_1147325_+	hypothetical protein	NA	NA	NA	NA
WP_013355638.1\|1147484_1147655_+	hypothetical protein	E9LUP6	Lactobacillus_phage	3.3e-23	96.4
WP_057138677.1\|1147665_1148136_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	2.4e-79	90.4
WP_057138678.1\|1148141_1148411_+	hypothetical protein	NA	NA	NA	NA
WP_047673048.1\|1148428_1148686_+	hypothetical protein	NA	NA	NA	NA
WP_016511011.1\|1148876_1149332_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	3.0e-79	96.7
WP_016511012.1\|1149341_1151240_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	92.6
WP_003644528.1\|1151229_1151424_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	7.4e-27	98.4
WP_057138679.1\|1151426_1152620_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.0e-222	97.7
WP_057138680.1\|1152597_1153341_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	7.3e-123	93.5
WP_057138681.1\|1153355_1154588_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	5.5e-200	87.7
WP_057138682.1\|1154660_1154999_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	4.4e-51	90.2
WP_057138683.1\|1154982_1155345_+\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	4.9e-64	96.7
WP_015380477.1\|1155334_1155775_+	hypothetical protein	E9LUQ6	Lactobacillus_phage	4.2e-78	97.9
WP_057138684.1\|1155771_1156155_+	hypothetical protein	E9LUQ7	Lactobacillus_phage	2.1e-65	97.6
WP_057138685.1\|1156155_1156794_+\|tail	phage tail protein	E9LUQ8	Lactobacillus_phage	1.4e-109	93.9
WP_016058334.1\|1156995_1157379_+	hypothetical protein	E9LUQ9	Lactobacillus_phage	3.9e-64	100.0
WP_016058335.1\|1157375_1157567_+	hypothetical protein	E9LUR0	Lactobacillus_phage	1.5e-27	100.0
WP_057138686.1\|1157579_1162721_+\|tail	phage tail protein	E9LUR1	Lactobacillus_phage	0.0e+00	85.6
WP_057138688.1\|1164633_1167048_+\|tail	phage tail protein	A0A2P0ZLF8	Lactobacillus_phage	0.0e+00	91.7
WP_057138689.1\|1167064_1169590_+	hypothetical protein	A0A2K9VDD0	Lactobacillus_phage	2.6e-244	80.7
WP_057138690.1\|1169582_1169834_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	3.2e-30	98.6
WP_003641410.1\|1169837_1169999_+	hypothetical protein	A0A2P0ZLG1	Lactobacillus_phage	4.7e-19	96.2
WP_057138691.1\|1170494_1171034_+	carbohydrate binding domain-containing protein	A0A1I9KKB3	Lactobacillus_phage	5.2e-62	65.9
WP_057138692.1\|1171045_1172218_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	5.4e-197	88.2
WP_003644510.1\|1172217_1172481_+	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	2.0e-38	100.0
WP_016058344.1\|1172493_1173024_+	hypothetical protein	E9LUS0	Lactobacillus_phage	2.9e-41	100.0
WP_003643145.1\|1174068_1174494_-	hypothetical protein	NA	NA	NA	NA
1173731:1173747	attR	NA	NA	NA	NA
WP_003643143.1\|1174658_1175672_-	hypothetical protein	NA	NA	NA	NA
WP_003643142.1\|1175777_1176299_+	GtrA family protein	NA	NA	NA	NA
WP_003645248.1\|1176398_1176758_-	YisL family protein	NA	NA	NA	NA
WP_003643140.1\|1176830_1178687_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_003643139.1\|1178700_1181007_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_003643138.1\|1181895_1183533_+	sulfotransferase family protein	NA	NA	NA	NA
WP_003643137.1\|1183510_1184686_+	sulfate adenylyltransferase	A0A2P1ELS9	Moumouvirus	8.5e-49	32.7
WP_003643136.1\|1184688_1185312_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	6.3e-27	40.6
WP_024971593.1\|1185301_1186258_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_003643134.1\|1186479_1188219_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA
WP_003644260.1\|1188724_1190500_+	SLC13 family permease	NA	NA	NA	NA
WP_003643131.1\|1190775_1192167_+	MATE family efflux transporter	NA	NA	NA	NA
WP_003643130.1\|1192293_1192539_+	hypothetical protein	NA	NA	NA	NA
WP_003643129.1\|1192927_1193374_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003643128.1\|1193645_1195334_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.2e-75	32.9

DBSCAN-SWA_3

1221421 : 1232061

Lactobacillus_phage(90.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003644269.1\|1221421_1222660_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	5.7e-221	99.7
WP_057138694.1\|1222750_1223722_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	2.8e-183	99.4
WP_003643099.1\|1223907_1224855_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
WP_003643097.1\|1225198_1225813_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
WP_003643096.1\|1225815_1228254_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	100.0
WP_003643095.1\|1228341_1228902_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	2.7e-101	100.0
WP_003643094.1\|1228972_1229413_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	8.0e-77	99.3
WP_003643092.1\|1229757_1230225_+	hypothetical protein	A0A2P0ZL91	Lactobacillus_phage	2.7e-83	100.0
WP_003643091.1\|1230199_1230430_+	cell surface protein	A0A2P0ZL95	Lactobacillus_phage	1.4e-37	100.0
WP_054605159.1\|1230366_1232061_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.8e-92	41.3

DBSCAN-SWA_4

2076898 : 2113130

Oenococcus_phage(41.94%)

head,protease,capsid,terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022638105.1\|2076898_2077276_-	hypothetical protein	A0A2K9VCG4	Lactobacillus_phage	7.9e-17	67.5
WP_022638106.1\|2077262_2077559_-	hypothetical protein	A0A2K9VCD4	Lactobacillus_phage	6.4e-38	74.5
WP_050578343.1\|2077559_2078675_-	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	3.1e-32	77.4
WP_021732622.1\|2078853_2079288_-	hypothetical protein	NA	NA	NA	NA
WP_022638108.1\|2079290_2079740_-	DUF1617 family protein	A0A2P0ZLE0	Lactobacillus_phage	1.8e-20	39.9
WP_057138639.1\|2079761_2085014_-	hypothetical protein	Q6SE68	Lactobacillus_prophage	8.2e-144	59.4
WP_099739626.1\|2085028_2085361_-	hypothetical protein	V5UQS8	Oenococcus_phage	2.2e-42	73.4
WP_057138638.1\|2085404_2091236_-	hypothetical protein	V5URV5	Oenococcus_phage	6.6e-227	40.9
WP_031275283.1\|2091251_2091515_-	hypothetical protein	V9QKH3	Oenococcus_phage	2.3e-23	65.4
WP_003642826.1\|2091622_2092021_-	hypothetical protein	V9QJA0	Oenococcus_phage	3.0e-46	74.8
WP_099447638.1\|2092120_2092504_-\|tail	phage tail protein	V5USQ9	Oenococcus_phage	1.8e-37	58.4
WP_013355729.1\|2092605_2092971_-	hypothetical protein	V5UQS4	Oenococcus_phage	3.0e-29	53.4
WP_013355730.1\|2092970_2093522_-	HK97 gp10 family phage protein	V5URV0	Oenococcus_phage	2.0e-64	62.3
WP_057138637.1\|2093523_2093871_-	hypothetical protein	V5US85	Oenococcus_phage	7.0e-36	62.3
WP_013355731.1\|2093870_2094203_-\|head,tail	phage head-tail connector protein	V9QJ97	Oenococcus_phage	1.8e-12	45.3
WP_003642820.1\|2094214_2094391_-	hypothetical protein	NA	NA	NA	NA
WP_003642819.1\|2094403_2095426_-\|capsid	major capsid protein	V5US24	Oenococcus_phage	3.7e-117	62.5
WP_013355732.1\|2095445_2095793_-	hypothetical protein	V5UTH9	Oenococcus_phage	4.4e-30	63.8
WP_013355733.1\|2095807_2096485_-	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	6.0e-15	32.1
WP_057138636.1\|2096656_2096863_-	hypothetical protein	NA	NA	NA	NA
WP_003642815.1\|2096914_2097193_-	hypothetical protein	NA	NA	NA	NA
WP_046947684.1\|2097167_2098853_-\|capsid	minor capsid protein	V5US81	Oenococcus_phage	5.9e-120	58.5
WP_013355737.1\|2098999_2099257_-\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	2.1e-08	39.3
WP_046947683.1\|2099225_2100734_-\|portal	phage portal protein	V5US18	Oenococcus_phage	1.8e-136	52.0
WP_022638113.1\|2100745_2101984_-\|terminase	PBSX family phage terminase large subunit	M1PG09	Streptococcus_phage	7.1e-139	61.0
WP_022638114.1\|2101973_2102501_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	5.0e-41	73.1
WP_033607771.1\|2102678_2102858_-	hypothetical protein	E9LUP6	Lactobacillus_phage	4.6e-07	56.9
WP_003642806.1\|2102967_2103789_-	abortive infection family protein	NA	NA	NA	NA
WP_022638116.1\|2104311_2104773_-	hypothetical protein	D6PSV8	Lactobacillus_phage	4.1e-39	57.0
WP_022638117.1\|2104983_2105364_-	hypothetical protein	NA	NA	NA	NA
WP_057138635.1\|2105360_2105879_-	hypothetical protein	O03915	Lactobacillus_phage	2.9e-54	69.1
WP_022638119.1\|2105875_2106163_-	hypothetical protein	NA	NA	NA	NA
WP_003642799.1\|2106159_2107068_-	DnaD domain protein	NA	NA	NA	NA
WP_161325284.1\|2107146_2107899_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	6.3e-74	52.2
WP_022638121.1\|2107930_2108818_-	recombinase RecT	E9LUM3	Lactobacillus_phage	4.6e-63	53.3
WP_022638122.1\|2108820_2109201_-	hypothetical protein	NA	NA	NA	NA
WP_187338081.1\|2109333_2109471_-	hypothetical protein	NA	NA	NA	NA
WP_022638124.1\|2109571_2110084_-	helix-turn-helix transcriptional regulator	D6PST4	Lactobacillus_phage	2.0e-23	39.4
WP_003642793.1\|2110151_2110457_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_003642792.1\|2110468_2110639_-	hypothetical protein	NA	NA	NA	NA
WP_057138634.1\|2110797_2110998_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011101085.1\|2111144_2111381_+	helix-turn-helix transcriptional regulator	A0A0K2CNE2	Brevibacillus_phage	8.5e-09	30.7
WP_057138633.1\|2111418_2111733_+	hypothetical protein	NA	NA	NA	NA
WP_033099030.1\|2111789_2112044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013355754.1\|2112189_2112693_+	helix-turn-helix transcriptional regulator	S6C481	Thermus_phage	1.7e-22	42.6
WP_013355755.1\|2112707_2113130_+	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	3.0e-12	35.1

DBSCAN-SWA_5

2322186 : 2330697

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003642593.1\|2322186_2322765_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-22	35.0
WP_003642592.1\|2322757_2323783_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.4e-61	41.7
WP_003642591.1\|2323779_2325234_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-50	34.0
WP_003642590.1\|2325218_2327438_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.7e-144	39.3
WP_011101895.1\|2327430_2328111_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003642588.1\|2328110_2328365_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003642587.1\|2328366_2329098_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
WP_003642586.1\|2329100_2330231_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003645861.1\|2330214_2330697_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16334 : 26423

Enterococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029508458.1\|16334_18482_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.4e-256	60.3
WP_010623241.1\|18588_19515_+	ribonucleotide-diphosphate reductase subunit beta	A0A2H4P8A9	Corynebacterium_phage	5.9e-37	32.1
WP_046811155.1\|19529_20480_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.2e-98	54.3
WP_112260612.1\|20607_21420_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-11	29.5
WP_046783566.1\|21533_22166_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.6e-14	33.2
WP_069302589.1\|22252_23155_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.8e-51	39.9
WP_112260613.1\|23262_24037_+\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2
WP_013356282.1\|24408_25563_+	cation:proton antiporter	NA	NA	NA	NA
WP_112260613.1\|25647_26423_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection