CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	0 crisprs	NA	0	0
NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	0 crisprs	csa3	0	0
NZ_CP021027	Rhizobium sp. TAL182 plasmid pRetTAL182c, complete sequence	0 crisprs	RT	0	1
NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	0 crisprs	csa3,DEDDh	0	1
NZ_CP021025	Rhizobium sp. TAL182 plasmid pRetTAL182a, complete sequence	0 crisprs	NA	0	0
NZ_CP021024	Rhizobium sp. TAL182 chromosome, complete genome	2 crisprs	WYL,cas3,csa3,DEDDh	1	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

221797 : 230139

Stx2-converting_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085861751.1\|221797_223000_+	DNA cytosine methyltransferase	A0A191SAU1	Nostoc_phage	4.9e-36	30.9
WP_085861547.1\|223290_223785_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	2.4e-29	47.9
WP_125461508.1\|223792_224164_-	hypothetical protein	NA	NA	NA	NA
WP_009996987.1\|224452_224815_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_009996986.1\|224811_225159_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.6e-27	53.9
WP_009996985.1\|225231_226797_+\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_009996984.1\|226796_227102_+	hypothetical protein	NA	NA	NA	NA
WP_125461509.1\|227096_227840_-	hypothetical protein	NA	NA	NA	NA
WP_085861752.1\|228343_229102_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.4e-14	32.9
WP_085861549.1\|229149_230139_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-11	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP021027

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

229324 : 280387

Enterobacteria_phage(66.67%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008536038.1\|229324_230551_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_008536039.1\|230514_232401_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004680427.1\|232400_232904_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004680426.1\|232990_233524_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004680425.1\|233639_235127_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_085861378.1\|235129_235684_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004680423.1\|235719_236712_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_085861379.1\|238445_241178_-	hypothetical protein	NA	NA	NA	NA
WP_016737477.1\|243096_244452_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_016737478.1\|244513_245680_+	FHA domain-containing protein	NA	NA	NA	NA
WP_012489524.1\|245679_246969_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_085861380.1\|246978_250584_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004678816.1\|250669_250858_+	hypothetical protein	NA	NA	NA	NA
WP_085861381.1\|250880_252497_+	hypothetical protein	NA	NA	NA	NA
WP_008536071.1\|252592_252835_+	hypothetical protein	NA	NA	NA	NA
WP_008536072.1\|254175_255186_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_164517823.1\|256734_257307_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_085861385.1\|258204_259092_-	host specificity protein	NA	NA	NA	NA
WP_085861386.1\|264429_267696_+	hypothetical protein	NA	NA	NA	NA
WP_085861387.1\|268041_271137_+	hypothetical protein	NA	NA	NA	NA
WP_085861388.1\|271640_272441_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.2e-57	44.0
WP_085861389.1\|272440_273727_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	6.9e-44	34.3
WP_085861391.1\|274485_277575_+	hypothetical protein	NA	NA	NA	NA
WP_094299122.1\|278025_278262_-	hypothetical protein	NA	NA	NA	NA
WP_085859525.1\|278554_279292_+	hypothetical protein	NA	NA	NA	NA
WP_085859526.1\|279391_280387_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.7e-40	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP021024

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021024_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021024_1

937392-937472

Orphan

Consensus_repeat	Method
CCGCGGTTCCGGGGCAACGACATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021024_1

>merge|NZ_CP021024|1|937392-937472|CRISPRCasFinder
CCGCGGTTCCGGGGCAACGACATGCGTAAACTTAACGCATGTCGCCCGGAGGTGTGCCGCGGTTCCGGGGTAACGACATGC

>NZ_CP021024|1|1|937392-937472|CRISPRCasFinder
CCGCGGTTCCGGGGCAACGACATGC	GTAAACTTAACGCATGTCGCCCGGAGGTGTG
CCGCGGTTCCGGGGTAACGACATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021024.1\|WP_085858233.1\|932058_934368_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP021024.1\|WP_064809707.1\|924661_925945_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP021024.1\|WP_085858229.1\|928877_929366_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP021024.1\|WP_085858239.1\|939506_942842_+\|DUF1217-domain-containing-protein	unknown	unknown	gnl\|CDD\|369062
NZ_CP021024.1\|WP_085858246.1\|949218_950364_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|372999
NZ_CP021024.1\|WP_064805926.1\|946686_947931_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NZ_CP021024.1\|WP_064805922.1\|935795_936377_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP021024.1\|WP_085858231.1\|929496_931611_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP021024.1\|WP_085858227.1\|926917_928741_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP021024.1\|WP_085858235.1\|937583_938543_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183808
NZ_CP021024.1\|WP_064805928.1\|948660_948924_-\|DUF982-domain-containing-protein	unknown	unknown	gnl\|CDD\|368772
NZ_CP021024.1\|WP_064809708.1\|926038_926500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_064809713.1\|936552_937365_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP021024.1\|WP_085858244.1\|948058_948526_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP021024.1\|WP_085860819.1\|944626_945607_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP021024.1\|WP_085858240.1\|943160_944597_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP021024.1\|WP_064809706.1\|922663_924595_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP021024.1\|WP_085858242.1\|945675_946284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_085858237.1\|938638_939205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_064800870.1\|934501_935761_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139

Protein	Function_ID	Function_description	E-value
NZ_CP021024.1\|WP_085858233.1\|932058_934368_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP021024.1\|WP_064809707.1\|924661_925945_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP021024.1\|WP_085858229.1\|928877_929366_-\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.7314e-66
NZ_CP021024.1\|WP_085858239.1\|939506_942842_+\|DUF1217-domain-containing-protein	gnl\|CDD\|369062	pfam06748, DUF1217, Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies.	3.76279e-56
NZ_CP021024.1\|WP_085858246.1\|949218_950364_-\|IS4-family-transposase	gnl\|CDD\|372999	pfam14294, DUF4372, Domain of unknown function (DUF4372). This domain family is found in bacteria, and is approximately 80 amino acids in length. The family is found in association with pfam01609. There is a single completely conserved residue G that may be functionally important.	7.09811e-27
NZ_CP021024.1\|WP_064805926.1\|946686_947931_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	6.75529e-114
NZ_CP021024.1\|WP_064805922.1\|935795_936377_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.1546e-60
NZ_CP021024.1\|WP_085858231.1\|929496_931611_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP021024.1\|WP_085858227.1\|926917_928741_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.49032e-66
NZ_CP021024.1\|WP_085858235.1\|937583_938543_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183808	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase.	0
NZ_CP021024.1\|WP_064805928.1\|948660_948924_-\|DUF982-domain-containing-protein	gnl\|CDD\|368772	pfam06169, DUF982, Protein of unknown function (DUF982). This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	2.79066e-22
NZ_CP021024.1\|WP_064809713.1\|936552_937365_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	5.38279e-64
NZ_CP021024.1\|WP_085858244.1\|948058_948526_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	1.55181e-09
NZ_CP021024.1\|WP_085860819.1\|944626_945607_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	7.84718e-76
NZ_CP021024.1\|WP_085858240.1\|943160_944597_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.86813e-128
NZ_CP021024.1\|WP_064809706.1\|922663_924595_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	6.23026e-72
NZ_CP021024.1\|WP_064800870.1\|934501_935761_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	7.21193e-125

>NZ_CP021024.1|WP_064809713.1|936552_937365_+|MipA/OmpV-family-protein
MFHRSVVSISLAIAFSSPALALAQESGQHFWSGDWYLSVGVAGFSAPKFEGSRRYEFRFSPLISAGRQGSAPRFSSRNDNPSFALMDNGAFRAGIVGKFVPSRDEGDGHELKGMKKVKWGAEAGGFVEVYPTDFLRARAEVRQGIRSHDGVVADLAVDAFTDIAPDLQLSGGPRATFATSGYYDAYYGVNAKQSAASGLDQYKPSSGIQSYGAGAALTWKATENLSASSFLEYKRLAGPAADSSLVRQRGSRNQVLIGVSATYRFNFSLQ
>NZ_CP021024.1|WP_064805922.1|935795_936377_+|histidine-phosphatase-family-protein
MSSAFPEIYLVRHGETEWSRSGRHTGRSDIPLTDVGEAAARKLAERLSGLSFAAVWSSPSERARKTCALAGFGSGAVIREDLAEWDYGAYEGITTKEILGKRPGWQLFRDGCPNGETAADVGARADAVVEALRQAGAPVLIFSSSHFLRVLAARWLGLPPQGGALFSLDTTSISVLGYEHDLAEPVIRGWNQR
>NZ_CP021024.1|WP_064800870.1|934501_935761_+|class-I-SAM-dependent-methyltransferase
MASAFLSIVQQIIRKGSLKLTLANGETHMIGDGTGDMVAARLADQEAEDAIRSDPTLKLGEMYMQGRFILEQGNIYDFLSLVKQNTTNEIFDFKMAALLVGRIAWQQLKSRVPVNRNKHNVAHHYDLSAKLFDLFLDEDWQYSCAYFEPPGIGLDEAQLAKKRHIAAKLLLQPNQRILEIGSGWGGMGMYLTEATEGAEFTGITLSEEQLKVSRARAEKRGLSDRVRFELQDYRSMNGRKFDRIVSVGMFEHVGIGNYGNFFRKVADLLDHNGVMVLHSIGRPKPSFATNAFIEKYIFPGGYIPSVGEVVAPLEKAGLLVRDVEILPMHYAYTLRHWRERFVARRAEAVALYDEQFFRMWEFYLAGSEMGFRWDELFILQIQIAKNQFAVPDNRNYIAENEAKLKEFEARRPPLEKVTF
>NZ_CP021024.1|WP_085858233.1|932058_934368_+|RNA-binding-transcriptional-accessory-protein
MAADLRFLAARISAEINARPDQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAERLVYLRELEARRDAIVESITGQGKMTDELMAKVAGAETKAELEDLYLPYKPKRRTRAEIARERGLGPLAEAILADRGREPAALAEGFVTADVPDVKTALEGARDIIAEAIAENADLLGKLRAHLRQAALLKARVVDGKQAAGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIEADAEIASPNKPVERMIAAAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERAEEEAIHVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPRNDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADMLAELPAPKPTKVIVSEAGASVYSASATGAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSRSLDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIAEAIVRHRDSEGRFETRRDLLKVARLGGRTFEQCAGFLRIPNGKEPLDASSVHPEAYGVAKKIVAACGRDLRALMGDSAVLKSVDPRQFIDEKFGLPTVKDILSELEKPGRDPRPSFKTATFAEGVNEISDLTPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMRRDDGSSASQPRGDSRASQGGRPQTERRPAAPKPESQGAFGAALAEAMKRK
>NZ_CP021024.1|WP_085858231.1|929496_931611_-|glycine--tRNA-ligase-subunit-beta
MPNLLLELRSEEIPARMQRKAAGDLKKLVTDALVEAGLSYEGAREYWTPRRLALDIHGLTARSADVREERKGPRTDANEKAIEGFLRGAGLSSVSEAQVVSDPKKGDFYVAVISKPGRATEEIVAEVMPGIIRDFPWPKSMRWGKASSKPGALRWVRPLQSIVCTFGPEHEETVVIPFEIDGITASNVTYGHRFHAPEVITVRRFDDYAASLEKAKVILDAERRKDIILHDARDIAFANGLELVEDEGLLEEVSGLVEWPQVLMGSFEEDYLSIPSEIIRLTIKTNQKCFVTRKQGEETLSNRFILVSNIQAHDGGKEIVHGNGKVVRARLSDALHFWKRDQGDMPDLDTLKASAAKFGLDLTKPLDQRMAKLDALDVTFHAKLGTQGDRVARIRALAKELTAITGADAALVDRAAVLAKADLRTEAVGEFPELQGLMGRKYAVLQGENLSIAAAIEDHYKPQGPSDRVPEDKVAITLALADKLDTLTGFWAIDEKPTGSKDPFALRRAALGVVRILLERRVRLPLLATTKDGDLLSFFHDRLKVYLRDQGARHDLIDAVLTPEADDLLMVARRVEALTAFITSEDGKNLLAGTKRATQLLAAEEKKGTVIADGVSPALFRLDAEKELFAAISSASKDAANSVAGEDFRSAMEALSKLRGPVDRFFEDVLVNDEDAAIRANRLALLRLIREATGTVADFSKISG
>NZ_CP021024.1|WP_085858229.1|928877_929366_-|DUF523-domain-containing-protein
MQSKILVSACLMGHAVRYNGRAKPLLHPAIERWRAEGRLVTICPEMSAGMAVPRPPAEIADGATGEEVLAGTARVIELTGGDVTAEFLQAAENAVALARQTGCHYALLIDGSPSCGSAFIYDGTFSGRRQAGNGVTAAALKAAGVEVFSHGEIDRLIGRLAP
>NZ_CP021024.1|WP_085858227.1|926917_928741_+|methyl-accepting-chemotaxis-protein
MKNLKISKQLILLIVGLMAAFAIATSLQIRSSVDAIYKERYDMLRAEVQSAISVFKLYQAKVTAGEMTLEDAQKQAYTTVNGMKYDPDGYFFGYSYDVQMMFHYDASKVGQNLKGQPDSKGKLYREELVKLGQQGGGLVEFYSTSKPGQPVGDYRKTAYGQAFDPWKVVVVTGVYMDDLDAQINGTILTALSGSIVLFFLAMTAAYFVIRGISGPLNNVHAALKAVSEEDVSIAIPHTGMNNEVGMMAKATLSLQEKIRERHQMSDREAAQQLALESERENNLRQQQDEAALQARVVTTIGQALELIARGDLTVRCADLGQKYAALRDNFNDALSHLEAAMAKVSAKGSDIGTSKEEIRRASNELSQRTERQAASLEETSAALDELTVAVRQTADGAHEASKRVHAVSAETTHSDAIVSEAIEAMSGIEKSSSEISKIIGVIDEIAFQTNLLALNAGVEAARAGESGKGFAVVAQEVRELAQRSAAAAKEIKDQIARSSSQVDHGVRLVGEAGEALKRISDQIKAANEIVAKIAHSASEQDTTLRSISSSVNQLDAATQQNAAMAEETTASAETLAADTDELIDLIRGFRVNSAAAAPVAHQGRRAA
>NZ_CP021024.1|WP_064809708.1|926038_926500_+|hypothetical-protein
MRQIFLGAAILLMAGSAMASSIEVIGKTAARAEGSIVAESCAACPPLQAGQNRKDYTVPELKPGVLQASEVRDVGGETKIFRTEAWMGGSPVVFVSKATPEALAAAEPSMPPAQGIDMNATTAAVIGGDARPVAAGMAEPPAALDVSEFKLRF
>NZ_CP021024.1|WP_064809707.1|924661_925945_+|phosphoribosylamine--glycine-ligase
MKVLLIGSGGREHALAWKLAQSPLMSEFYAAPGNPGIGEHAIVVPLNVEDHEAVAAFCKDKAIDFVVVGPEAPLVAGLADRLRADGLAVFGPSAGAAQLEGSKGFTKDICARYGIPTGAYQRFNNAPKAKAYIRAQGAPIVVKADGLAAGKGVTVAMTLDEALAAVDDCFEGAYGAAGAEVVVEAYLDGEEASFFCLCDGRHALPLATAQDHKRVGEGDTGVNTGGMGAYSPAPVMTAEMVERTMKEIIEPTIRGMAESGHPFSGVFFAGLMITKKGPELIEYNVRFGDPECQVLMMRLKSDLLPLLLATANGTLDQVSAEWSEDPALTVVMASKGYPGAYEKNTPIQSLPEAGEGEKVFHAGTGMKDGVLVATGGRVLNVTASGGTVAEAKGRAYALLDRVRWENGFCRRDIGWRAIEREKISDKA
>NZ_CP021024.1|WP_064809706.1|922663_924595_+|DUF2207-domain-containing-protein
MGRRFFGFCLALLLMVAAPAAFAAEVVDSFASDIALEKSGEMTVAETITVNAEGNRINHGIFRDFPLYFTDGAGRRRSVDFDMVSVTRDGAEEPWHTESISGGIRIYAGSAEVTVTPGRHRYVFTYRTNRQIRYFDDHDELYWNVTGNGWIFPIRSVTATVKLPPDVSATETTFFTGPQGARGKDARVSESGAGLVFSTTAPLGPKEGLTFAIRMPKGSIDPPSADMESTWWLKDNRNYFIGFGGLILVFAYYLRSWLKVGRDPARGVVVPRWDAPDGISPALVNYIDNKGFSGGGWTALAATALNLAVRGYVKLEDLKDSIIIRGTGKPVGKEKFQAGEAELLKVAGGEGRTLTIDEANGERVKTVGQAFRSAIEREHRGKYYNSNIGYTTGGVALSAAALVALFVFGSLEPDTIALMLIPIAISVFIAVFIAGLVKSLHQGRSLFAKVMAIIAAAVGVFVGVSILGILMLTFASSLVELHETPMLFAIGGIVLLNILYVFIMGAPTPLGARMMDGVDGLRQYLTLAEKDRMNMAGAPKMSPQHFETLLPYAVALGVEKPWSRTFETWLAAAAAGTAAAYAPSWYSGDFNSGSFSDRIGGFSSSMASTIASTIPAPPSSSSSGFSGGGSSGGGGGGGGGGGW
>NZ_CP021024.1|WP_085858235.1|937583_938543_+|4-hydroxybenzoate-octaprenyltransferase
MQDTGEFNDRVSDAPSDNWVYRILPPWLWPYAQLARWDRPIGWELLMWPCFWSATLASNAAIGQGLYSGSLLVSHLFLYFIGAVAMRGAGCTYNDLVDHEIDMEVARTRSRPLPSGRVTRARAKIFIGIQALVGLFVLLQFNWFTVFLGLLSLGIVALYPYAKRFTDWPQFYLGLAFSWGALMGWAGILGGLSLAAILLYAASVAWTIGYDTIYAHQDKEDDELIGVRSTARLFGDQTRQWLIGLYGLTLVLMFAAFALAGANLIAFLALFGAAGMFAWQIVRLDINDPAQCLALFKSNNRVGLTIFLGLFFSLLFALP
>NZ_CP021024.1|WP_085858237.1|938638_939205_-|hypothetical-protein
MNNPVLKPAWAGTTLRLDPSRFPQQVSYAIHDCSDDVSITLDERGAVLRKVLPSSGLPLSIALPKRVFKGVAARAIDHGDGEVTVTLELHHADPELCIPLLVAHDLSDIAADWRSWSEAFRIPMLMVEADGVARPLEDHIGALRTSDLKPRRRHSYFANRRPRFLVRRTTGQLGVAMKIEGKEIIARN
>NZ_CP021024.1|WP_085858239.1|939506_942842_+|DUF1217-domain-containing-protein
MITASLAYTILSKDMTSSLNKVAAQATVKKDAQYYADNINKVKDVDDFLGDYKLYSYAMKAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDKDVQTDAQEDDLIGLYKQSFVDADKAAAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASKDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVTGTAQTAAQKASVIETYTLNSQSVIIDNAVGSDVVYVSKTAADYNKAYYTAKIGTITNVDDLVADARLTSYIKTAYSMGADFTAPALRMVLTDPSYAQLMGFTNVYNAFNFKSDGSTSTTARAQTIDQANKLASAASSTANYYSVTSQSSGITNVDDLLGDSVMARYIKDAYGLGVNFSNAELKNILTDSAYAAAQGQAGLNADFNFNADGSINGSVIQTAAQRKSTTDKSAANAAHFNAMIGNVTNVDDIMSDPVAVSYLRTSMQIADSVSDATLRTFLVDPAAASAQGYSDVHDLFNFKTDGSVATLYATQTAAQSANTSSKADSAAVYYQSTIAGISNVDQLLADQKLNNFVRNAYGIPATVSDVDLRAILTDQSGTGTYADVAAAFNFKADGSLEDGLAAQTSSQITNTKIAAGARTDDYSSRMATIANVDELIADPAITNFLKSTYDLAFDITDAELKSILTDATAAAAAGHADLNADFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLDTAEIKTVNDFLRTNASADFKKSNDNLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERITNLARAFNFGPDGKAAAPLQALPDATLAKYATDYKAHVTMLLKAGPVKDKASKDATTEVDYFAKGMAKVQSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNTKADARFKDIVAAFNFDKEGNLTRAKIGAIQNKAAEAHTQDLFIKQTLETQQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAKQADLINRFVKLEDLQDPKKVDKLLRRFTAMYDVQNSTQQSPALQILTGGGTQQA
>NZ_CP021024.1|WP_085858240.1|943160_944597_-|FAD-binding-oxidoreductase
MSSAGISTDLLDRFAAIVGEKYALRGEADLAPHLIENRGLYHGSSPLLLKPGSVEEVSKIMKLATETKTAIVPQTGNTGLVGGQTPRTGQADIILSLERMTRIRDVDPVANVLVADGGAILADVQKAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAVLAYGNMRQLCLGLEVVLPTGEIWDGLRRLKKDNTGYDLRDLFIGAEGTLGVITGAVLKLFPQPLGHQVAFAGLNSVEDALALFNLAASLCGTSLTGFELMPRFGVEITTRHIDGVRDPLEAAYPWYVLIDISTSDSAETAERMMNGVLEQGFEAGLVQDAAIAASVAQQKAIWHMRESMSDAQKPEGGSIKHDVSVPVSKIPHFMAEAEKAVMAAMPGARICAFGHMGDGNIHYNISQPIGADKATFIARWREMNHIVHGLVLAHGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVVSLEV
>NZ_CP021024.1|WP_085860819.1|944626_945607_-|threonylcarbamoyl-AMP-synthase
MARIIDIRADRQAALEAACAALSDGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLEMAGHHAEFDPVSRALAEAFWPGPLTLVLPLRPASPIHALATAGLDSVGVRVPKGFAGTLIGAFGRPLAAPSANTSGAISATSAAHVEADLGARIPLILDAGPSAVGVESTIVKVEGDRVRLLRPGGLAAREIERIVGRPLLRAKKASAAIEAPGMLASHYAPSASVRLNATAVEPGEALIAFGGASVEGARAARIVLDLSPAGDLAEAAANLFDYMKRADASGVSSIAFSPIPDEGLGEAINDRLQRAAAPRATA
>NZ_CP021024.1|WP_085858242.1|945675_946284_-|hypothetical-protein
MARLRYFDAKEVIRPQERQLVAAHSEFLRTGRIPRDRRHWLAEERRYLTHDEVAEKTGRKLQAAGEKTHQHINGFHHSIQFPKMIFHRTLQDSPHLGYCHVTAARTKFARYEEVSWAFYIANFYSDIGDNDNFFERIDVCYSRMYFAVAIKPGEESAEKMTIDRSVRGNGLLFRTHDPQAAIRNILLLGARNEQLREIIRQL
>NZ_CP021024.1|WP_064805926.1|946686_947931_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MDIRSNVLRQLKNRREGFSLEQPFYTDEDYFKLDMEMIYYRDWLFMGHDCELPKPGAYFTVQIGTYPVVIVRGRDNVIRAFHNSCRHRGSRVCTKEHGSSVRLVCPYHQWTYDLDGKLAFARHMGDDFDKTGFNLKPVHCESVAGYIFICLADVAPDFKPVRDKIEPYMAPHRIGETKVAFQSTIIEKGNWKLVWENNRECYHCAANHPELCRTYPEAPSVTGTDGGADDPEIAGHWARCEAAGLPSKFQISPDGQFRTARMPLIEDAESYTMSGKPAVQRRISDDISINRIGTMLLFHYPTTWNHLLGDHAISFRVLPLSANETAVTTKWLVHKDAVEGVDYNLEELTHVWTETNDQDRRIVEENAFGIHSPAYEPGPYSALHEGGVMQFLEWYSNFMVNRLQGDQAKISAVA
>NZ_CP021024.1|WP_085858244.1|948058_948526_+|BA14K-family-protein
MIGLRNRMATAVMAAAIVLTSFVPSQAIQMPAAPQVEKSSAVENVQYYYRRDYYRPGYRPGAYYRPGWYGGYRGYTYYRPGYRRYNGYWYPLAAFGGGAVIGGAIVAPPRRYVVPARRMGSAHVAWCENRYRSYRAYDNTFQPYNGPRQQCYSPY
>NZ_CP021024.1|WP_064805928.1|948660_948924_-|DUF982-domain-containing-protein
MKWHTPGEFSPLMLVVNGPEKYKLIASLWEAAQMLTACWPFDDGEEYLTAVMACRDAIHGDLPAEDAREALIRAAKEAGISVITVVH
>NZ_CP021024.1|WP_085858246.1|949218_950364_-|IS4-family-transposase
MRHQNSVFHDLLKRIPWAAFERLVEEHQADKHVRRLSTKSQLVALLYGQLSGAVSLREIVGGLQSHRSGLYHLGAQPVSRSTLADANGRRSSAVFAELFAQMVSRAGRGLKRAVGEAVHLIDSSSLRLSGAGSDWARFSDQACGAKVHVVYDANAERPIYAAVTPANVNDITAAKVMPIEAGATYVFDLGYYDFGWWAKLNAAGCRIVTRLKSHTRLAVTEEKAVSPDGTILSDRVGLLPQRMAKSRRNPMSGPVREICVQIETGKILRILSNDLDAPAEEIAALYKRRWAIELFFRWVKQTLKIRHFLGNSENAVRIQIAVALIAYLLLQMAKADQTTVTSPLAFARLVRANLMHRRRIDRLLQPTATPPHHLHQMSLQW

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Crispr_ID: NZ_CP021024_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021024_2

3200202-3200301

Orphan

Consensus_repeat	Method
GGATGAGGCTGGAGAGAGGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021024_2

>merge|NZ_CP021024|2|3200202-3200301|CRISPRCasFinder
GGATGAGGCTGGAGAGAGGTCGCGCCCGTCGCACTCTCGGAAAGCCCTGGCCCAGTGCCCCCTTGCGAGGCACCTCGGGATGAGGCTGGAGAGAGGTCGC

>NZ_CP021024|2|2|3200202-3200301|CRISPRCasFinder
GGATGAGGCTGGAGAGAGGTCGC	GCCCGTCGCACTCTCGGAAAGCCCTGGCCCAGTGCCCCCTTGCGAGGCACCTCG
GGATGAGGCTGGAGAGAGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021024.1\|WP_085860968.1\|3202230_3203310_-\|DUF930-domain-containing-protein	unknown	unknown	gnl\|CDD\|368726
NZ_CP021024.1\|WP_085860090.1\|3192858_3193599_+\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP021024.1\|WP_164517804.1\|3201971_3202133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_085860098.1\|3208024_3209212_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP021024.1\|WP_085860093.1\|3199207_3200098_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP021024.1\|WP_064803944.1\|3196430_3196853_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP021024.1\|WP_064803940.1\|3194193_3194541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_004677701.1\|3203387_3203681_-\|GYD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226724
NZ_CP021024.1\|WP_085859716.1\|3195249_3196197_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP021024.1\|WP_011426193.1\|3203883_3205941_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP021024.1\|WP_064803942.1\|3194713_3195019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_085860091.1\|3197761_3198007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021024.1\|WP_085860094.1\|3200334_3201129_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP021024.1\|WP_085860096.1\|3206409_3206757_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP021024.1\|WP_085860095.1\|3201189_3201975_-\|aminoglycoside-3'-phosphotransferase	unknown	unknown	gnl\|CDD\|270699
NZ_CP021024.1\|WP_085860097.1\|3206768_3207806_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NZ_CP021024.1\|WP_085860967.1\|3198506_3199205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
NZ_CP021024.1\|WP_085860966.1\|3196952_3197528_-\|DUF922-domain-containing-protein	unknown	unknown	gnl\|CDD\|227951
NZ_CP021024.1\|WP_085860099.1\|3209301_3211170_-\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP021024.1\|WP_085860092.1\|3198025_3198424_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|225220

Protein	Function_ID	Function_description	E-value
NZ_CP021024.1\|WP_085860968.1\|3202230_3203310_-\|DUF930-domain-containing-protein	gnl\|CDD\|368726	pfam06059, DUF930, Domain of Unknown Function (DUF930). Family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.	8.8268e-25
NZ_CP021024.1\|WP_085860092.1\|3198025_3198424_-\|DUF427-domain-containing-protein	gnl\|CDD\|225220	COG2343, COG2343, Uncharacterized protein conserved in bacteria [Function unknown].	6.67271e-50
NZ_CP021024.1\|WP_085860098.1\|3208024_3209212_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP021024.1\|WP_085860093.1\|3199207_3200098_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.75554e-13
NZ_CP021024.1\|WP_064803944.1\|3196430_3196853_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	2.15285e-56
NZ_CP021024.1\|WP_004677701.1\|3203387_3203681_-\|GYD-domain-containing-protein	gnl\|CDD\|226724	COG4274, COG4274, Uncharacterized conserved protein [Function unknown].	2.86866e-41
NZ_CP021024.1\|WP_085859716.1\|3195249_3196197_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.67037e-27
NZ_CP021024.1\|WP_011426193.1\|3203883_3205941_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP021024.1\|WP_085860090.1\|3192858_3193599_+\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	8.2167e-79
NZ_CP021024.1\|WP_085860094.1\|3200334_3201129_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.72162e-25
NZ_CP021024.1\|WP_085860096.1\|3206409_3206757_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	2.57952e-23
NZ_CP021024.1\|WP_085860095.1\|3201189_3201975_-\|aminoglycoside-3'-phosphotransferase	gnl\|CDD\|270699	cd05150, APH, Aminoglycoside 3'-phosphotransferase. APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibiotics. The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.6384e-110
NZ_CP021024.1\|WP_085860967.1\|3198506_3199205_-\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	4.29808e-54
NZ_CP021024.1\|WP_085860966.1\|3196952_3197528_-\|DUF922-domain-containing-protein	gnl\|CDD\|227951	COG5664, COG5664, Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones].	1.92474e-95
NZ_CP021024.1\|WP_085860099.1\|3209301_3211170_-\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP021024.1\|WP_085860097.1\|3206768_3207806_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0

>NZ_CP021024.1|WP_085860093.1|3199207_3200098_-|DMT-family-transporter
MSRQVQGYFYLALAMLTVGSTVVASKIIASGLPPFTATALRFALALPVFFLLMRASGARVPKLSSHDRLILVIQAGAGSVGYTTLLISGLSLTSAADAGVIIGTLPVVAAAVSILVLRERPGRALLLAVVLASAGVFSIAFTPGATGGSLAGNLLIFLAVICEGLFILLNKRLTVDIPPLAQSTLMTGIGFVVSIVPAIFEAPVHGFSESAAAAVVYYALVPTVGGFLLWYAGAERVSGTEAAPFTALAPVSAVMLAFVLLGEPIGFNQIAGIACVLAALSGLAFAGSRRKFIEGK
>NZ_CP021024.1|WP_085860967.1|3198506_3199205_-|hypothetical-protein
MRFSHSDAIWQAFPELAAGALYADGIDASADVEEAIASFSAIAVARLAEAQESEFPEIQAWRRGFSRMGLKPTQYRSASEALLRRFRQECALPRLHPLVDLCNAVSLAFAIPIAVFDVEKIVGDLEVRHATGHETYLTFGGDIEHPEPNEVIFADGAARAHARRWTNRQSGLSAVRQTTRSVLIVAEALHAGAGEDTGRLVATLANALARHWSVTAATAALSEASPRFAFQV
>NZ_CP021024.1|WP_085860092.1|3198025_3198424_-|DUF427-domain-containing-protein
MSDKSIKIPGPDHPITVEHNPCRVVVTLGGRTVADSRDALTLREASYPPVQYIPRKDVDMSLLQRTDHRTHCPYKGDAAYYSIIRGGERGENAVWTYEAPNAAVSNIKGHLAFYPDRVDSIEEMASPEAGTF
>NZ_CP021024.1|WP_085860091.1|3197761_3198007_+|hypothetical-protein
MARYYFDLHNAEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPAGDRMTIAVTVRDENGEPVTVASLVFSNEWLDGLR
>NZ_CP021024.1|WP_085860966.1|3196952_3197528_-|DUF922-domain-containing-protein
MAAFFASLPAAALAEGWQAVEEVRPYAISGTSGAALYESIGEHGPKAGVTGRVIAHTTFKLTWTRKYEPQGNACVITTNKPKLIITYTLPKPSAALPSAVKSSWDGFISGVAAHERVHGETIKDMVREIEAMSVGFTVADDPDCQKIRVELTRRLGEISARQRQRGRDFDKVEMGDGGNIQQLILKLVNGP
>NZ_CP021024.1|WP_064803944.1|3196430_3196853_-|YjbQ-family-protein
MPQTILTLSTRGQGLYEFTDQAEAFVSASGREEGLLTVFVRHTSCSLLIQENADPDVRTDLLAFFRRLVPPASDPSMGWVVHRAEGPDDMPAHIKAALTQVSIGIPVARGRLTLGTWQGLYLFEHRDRPHRREIVLHLGG
>NZ_CP021024.1|WP_085859716.1|3195249_3196197_-|IS110-family-transposase
MRLPQAFMVGIDVSKAHFDVAVEGKSAVGRFDNDAPGRTALATAIAGAELVVVEATGGYEMALVRTLMAAGIAVAVVNPRQVRDFARASGRLAKTDQVDARVILHFARAMRPAQIPHIDDGRIALAALVARRRQLIDMAVAEKNRLEHAPQAVAALIGETLAALKSQLARVDAAIALAIEAEPDMAARRDLLLTVPGIGEVGAAVLIAELPELGAIDDKKLAALVGVAPVAHDSGTWRGQRHIAGGRATVRCALYMATLSAIRCSPAIKAFHKRLRDAGKPPKVALVAAMRKFIVMINTIIKRRTPWSEPQQHGC
>NZ_CP021024.1|WP_064803942.1|3194713_3195019_-|hypothetical-protein
MTHFLTKACLAAVLALSSIPATVSTAAAAGPQTNFIVEAQYHRPIRGCSPMHAVRKARDFGLRRAHITRMSPRVVVVAGRDRRGWDRMVFANVRGCPLIRR
>NZ_CP021024.1|WP_064803940.1|3194193_3194541_-|hypothetical-protein
MMQFLAKAGLAAMLAAGTLAGTVVPAAAQFSIIIGDQDRDPPRDYRRPPPPPGFDRRRPRGCDPRLAEDLARDWGFRRPRVVDITPRRVIVQGWTRRGPDEMSFANVRGCPALRR
>NZ_CP021024.1|WP_085860090.1|3192858_3193599_+|SIMPL-domain-containing-protein
MAPILSKTLVMTALLALPLGGAAPALAQEAKPREAVISVTGDGESAVAPDMAIVNLAVVKQAKTAREALDENNKAMNDVLKALKDGGIAERDLQTSGFSIQPQYNYPQPVDGQQQQPQLIGYQTINSVTVRLRDLSKLGQVIDQSVTLGINQGGDIQFTNDKPEAAFEEARKNAVAEAVKKAKTLSEAAGVKLGRIIEINENVPRPLPQPAYRATMMKEADVAAVPVQGGENNYTVSVTVTFAIEQ
>NZ_CP021024.1|WP_085860094.1|3200334_3201129_-|AraC-family-transcriptional-regulator
MPKNQFRMLRSALTGVEAVEAETPHSFARHTHEQFGIGLVSSGAQKSLSGRGVVEAEAGDIITVNPNEVHDGAPIGERRSWRILYFDPEIVTGLSQEIGAKRSEIPHPVIRDAAVAARFETLFRAATASAADGLLCEELLLQLVADVMREGDGSEQRPPVPASIRAARDLIDDDPLAAVSLADLSRESGLSRFQLLRGFVKATGLTPHAYLVQARIHLARRLIAEGTPLAEAAFASGFADQSHMTRVFVRKYGLSPRLYAGAFL
>NZ_CP021024.1|WP_085860095.1|3201189_3201975_-|aminoglycoside-3'-phosphotransferase
MTFSKTLPAALGERLSGYRFERDALGRSAASVFRLEGDGLPALYLKVEAAGRFGELADEAARLAWLKACRLPCPEVIARESDGERNWLLVSALPGTDLASASALTPLACVELLAEALLDLHRLPIASCPFDHRLEKRLPVAKVRMEAGIVDEEDFDPARLGKRAAELFAALESMRPTNEDLVVTHGDACLPNFVASGGQFSGYIDCSRLGVADRYQDIALACRSIAYNFGEALVQPFLDRYGLPAPDPARLGYYQLLDEFF
>NZ_CP021024.1|WP_164517804.1|3201971_3202133_-|hypothetical-protein
MSNEIERFLERQDEAVRALFLENKGDELTDILVAALEEAFEILLEAAPAETLH
>NZ_CP021024.1|WP_085860968.1|3202230_3203310_-|DUF930-domain-containing-protein
MWLDAAGFKGHIAAVAEEDVEPAEAHEAAKQRPEIRWGVGASVLLHVPLIALLIFGLPKIEPKPPGDESVKVELVPPPEEKKPEEKKAEEKPKEEQKAQQQAKAEPPPPPPSPKSPPPPARVKGMTPVFEFGDKDSGPTKNANGNASEGEIGNTPVPPPPSGEMQPERLPEAAKNAKPADQPPGNPIPKEVNLPEIATAAIHPERDAPAPSSEEARTSFEAEKPETKPATQSGQTSKTSLPEVKKLFSRYATDDPVARTALGNMSRGERMNELCMTELTQQIEHASPKYRGPEIPRYPPFTNQTVIQVLETGRFRVDGDWYRMQFECEVDPDATKILSFAFKLGELIPRSQYAKYKIRE
>NZ_CP021024.1|WP_004677701.1|3203387_3203681_-|GYD-domain-containing-protein
MTTYILLIDWTDQGIRTVRDSTKRLDAAKKLLAGVGGSFNQFYLTMGGHDMVAVCEAPDDAVMAHFTLSLAMAGNVRTETLKAFPEAAYRDLIGSLG
>NZ_CP021024.1|WP_011426193.1|3203883_3205941_-|RNA-polymerase-sigma-factor-RpoD
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTSEQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDEDSEGGELAPSAGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDDDITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVEQRLAATGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVQNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKAENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
>NZ_CP021024.1|WP_085860096.1|3206409_3206757_-|GFA-family-protein
MLYEGSCHCGNVAFAVEGEFTEALDCNCSLCRRRGGLLAFVPREKLVLKTPEDDLSTYTFNRHVIKHHFCANCGIAPFGEGVAPNGAAMASINLRCIPAIDLGALKVTPYDGQAR
>NZ_CP021024.1|WP_085860097.1|3206768_3207806_-|L-threonine-3-dehydrogenase
MSNMMKALVKSKPEVGLWMEDVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNAVPIPDDITDEIAAIFDPFGNAVHTALSFDLVGEDVLVTGAGPIGIMGALVAKRSGARKVVITDINPHRLDLARKLGIDHVVDASKENLADVMKAIGMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEIDWNKVIFKMLNLKGIYGREMFETWYKMIAFVQGGLDLSPIITHRIKIDDFRDGFEAMRSGNSGKVVMDWM
>NZ_CP021024.1|WP_085860098.1|3208024_3209212_-|glycine-C-acetyltransferase
MTSPFLSHLRAEISALRDAGLYKSERVISSKQAGEIAISTGERVLNFCANNYLGLADNEELAEAGKKALDRYGYGMASVRFICGTQEEHKQLEARISAFLGMEDTILYSSCFDANGGLFETLLGEEDAIISDALNHASIIDGVRLSKAKRFRYANNDMTALEEELKKAEGSRFKLIATDGVFSMDGIIANLGGVCDLAEKYGAMVMVDDSHAVGFVGRNGRGSPEYCGVEDRIDIITGTLGKALGGASGGYTSARVEVVEWLRQRSRPYLFSNTLAPVIAAASLKVFDLIENGDALRKRLSDNADLFRIEMTKLGFTLAGEGHPIIPVMLGDAKLAQDMAGLMLKKGIYVIGFSFPVVPKGQARIRTQMSAAHSRADVERAIAAFAEAGRELGVI
>NZ_CP021024.1|WP_085860099.1|3209301_3211170_-|DNA-helicase-RecQ
MPFSGRNEPGFSASDALFSASRSPLDVLKQVYGYSSFRGKQQKVVEHIVSGGDAVVLFPTGAGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLGIRAAALNSSLSREEFVQVRRALSAGKLDLLYVTPERILTDGFRELIASEKIALFAIDEAHCVSQWGHDFRPEYRELGRLGEQYPGVPRVALTATADPHTRDDIIERLGLGNAEIFTTSFDRPNIAYEIVERDQPRQQLLRFLSGHKGDSGIVYCLSRAKVEDTADWLNGQGIRALPYHAGMDRALRDSNQDAFLKEENLCLVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRRRMIDEGNAADEIKRVERAKLNALLAICETASCRRQAILAHFGEAHAGQCGNCDTCLKPVETWEGTEAAIKALAAIYRTGERFGAGHVIDVLVGNINEKTERFGHVNMPVFGAGKDIPARTWQSVYRQLLAMGLIRIDHEAYGALKLESEARAVFKQERQVFFRKDRPASERRTKKAERSERKSGLSGADGTLFEALRAERMSIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLGISGVGQSKLERYGDAFLEIILSHDKD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP020948	Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence	193318-193348	6	0.806
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	457542-457572	6	0.806
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	423820-423850	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	451025-451055	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	353739-353769	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	975708-975738	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	126292-126322	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	102069-102099	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	96396-96426	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013605	Rhizobium sp. N731 plasmid pRspN731d, complete sequence	102063-102093	7	0.774
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	151235-151265	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	667885-667915	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	619459-619489	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	126623-126653	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	460206-460236	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	114710-114740	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	570442-570472	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	281524-281554	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	78821-78851	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	132401-132431	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	137766-137796	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	132401-132431	8	0.742
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	132221-132251	9	0.71
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	343744-343774	9	0.71
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	350270-350300	9	0.71
NZ_CP021024_1	1.1\|937417\|31\|NZ_CP021024\|CRISPRCasFinder	937417-937447	31	CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	319407-319437	9	0.71

1. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP020948 (Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence) position: , mismatch: 6, identity: 0.806

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gacggcttaatgcatgtcgctcggaggtgtg	Protospacer
*  ..*****.*********.**********

2. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 6, identity: 0.806

-gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tgccgac-taatgcatgtcgcccggaagtgtg	Protospacer
 *. .** ***.**************.*****

3. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gatcctctaacgcatgtcgcccggaagtgtg	Protospacer
*    ..******************.*****

4. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gatcctctaacgcatgtcgcccggaagtgtg	Protospacer
*    ..******************.*****

5. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
ccgcgcttaatgcatgtcgcccggaagtgtg	Protospacer
 .. .*****.**************.*****

6. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

7. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gcagcaataatgcatgtcgcccggaagtgtg	Protospacer
*.*.   ***.**************.*****

8. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gtcggactaatgcatgtcgcccggaagtgtg	Protospacer
** .. .***.**************.*****

9. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

10. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

11. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

12. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

13. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013515 (Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

14. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

15. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013605 (Rhizobium sp. N731 plasmid pRspN731d, complete sequence) position: , mismatch: 7, identity: 0.774

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
tcagtcctgacgcatgtcgcccggaagtgtg	Protospacer
 .*. *.*.****************.*****

16. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
aagtgcctaatgcatgtcgcccggaagtgtg	Protospacer
. . .*.***.**************.*****

17. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gatcctctaatgcatgtcgcccggaagtgtg	Protospacer
*    ..***.**************.*****

18. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gatcctctaatgcatgtcgcccggaagtgtg	Protospacer
*    ..***.**************.*****

19. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
aggcgcctaatgcatgtcgcccggaagtgtg	Protospacer
. . .*.***.**************.*****

20. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gattctctaatgcatgtcgcccggaagtgtg	Protospacer
*    ..***.**************.*****

21. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
ccccgcttaatgcatgtcgcccggaagtggg	Protospacer
 .  .*****.**************.*** *

22. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gatcctctaatgcatgtcgcccggaagtgtg	Protospacer
*    ..***.**************.*****

23. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
acagcaataatgcatgtcgcccggaagtgtg	Protospacer
..*.   ***.**************.*****

24. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
ccccgcttaatgcatgtcgcccggaagtggg	Protospacer
 .  .*****.**************.*** *

25. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gtcggaccaatgcatgtcgcccggaagtgtg	Protospacer
** .. ..**.**************.*****

26. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gtcggaccaatgcatgtcgcccggaagtgtg	Protospacer
** .. ..**.**************.*****

27. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 8, identity: 0.742

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
gtcggaccaatgcatgtcgcccggaagtgtg	Protospacer
** .. ..**.**************.*****

28. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 9, identity: 0.71

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
cccataccaatgcatgtcgcccggaagtgtg	Protospacer
 . *  ..**.**************.*****

29. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.71

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
accgcattaatgcatgtcgcccggaagtgag	Protospacer
.. .  ****.**************.*** *

30. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 9, identity: 0.71

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
accgcattaatgcatgtcgcccggaagtgag	Protospacer
.. .  ****.**************.*** *

31. spacer 1.1|937417|31|NZ_CP021024|CRISPRCasFinder matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 9, identity: 0.71

gtaaacttaacgcatgtcgcccggaggtgtg	CRISPR spacer
accgcattaatgcatgtcgcccggaagtgag	Protospacer
.. .  ****.**************.*** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

117989 : 124162

Rhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125461449.1\|117989_118526_-	hypothetical protein	L7TMN3	Rhizobium_phage	1.6e-58	82.5
WP_125461450.1\|118518_118983_-	hypothetical protein	L7TJ86	Rhizobium_phage	4.5e-62	72.1
WP_085857738.1\|118954_119362_-	hypothetical protein	A0A193GYJ9	Enterobacter_phage	1.2e-05	38.9
WP_164517751.1\|120125_120665_+	DUF4145 domain-containing protein	A0A1S6L018	Salmonella_phage	9.3e-11	32.1
WP_085857740.1\|120734_120926_-	hypothetical protein	NA	NA	NA	NA
WP_085857741.1\|121148_121709_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_085857742.1\|121797_122088_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_125461451.1\|122253_122631_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	4.8e-22	42.9
WP_085857743.1\|123203_123407_-	hypothetical protein	NA	NA	NA	NA
WP_085857744.1\|123403_124162_-	DUF159 family protein	A0A291AUP1	Sinorhizobium_phage	1.3e-39	40.2

DBSCAN-SWA_2

1083026 : 1136822

Rhizobium_phage(81.97%)

terminase,head,integrase,portal,capsid,tail

attL 1082873:1082921|attR 1136930:1136978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1082873:1082921	attL	NA	NA	NA	NA
WP_085858399.1\|1083026_1083878_-\|integrase	site-specific integrase	A0A068CCA6	Rhizobium_phage	5.4e-146	86.2
WP_085858402.1\|1084322_1084562_-	hypothetical protein	A0A068CE29	Rhizobium_phage	1.6e-26	76.9
WP_085858404.1\|1084558_1085071_-	hypothetical protein	A0A068C9C1	Rhizobium_phage	3.7e-49	59.1
WP_085858406.1\|1085070_1085427_-	hypothetical protein	NA	NA	NA	NA
WP_085858408.1\|1085423_1086170_-	hypothetical protein	A0A068C9C5	Rhizobium_phage	2.1e-37	74.5
WP_085860840.1\|1086166_1086715_-	DUF1643 domain-containing protein	A0A068CDG1	Rhizobium_phage	3.3e-96	90.2
WP_085858410.1\|1086738_1086990_-	hypothetical protein	NA	NA	NA	NA
WP_085858412.1\|1086986_1087205_-	hypothetical protein	A0A068C9D0	Rhizobium_phage	3.2e-26	75.0
WP_085858413.1\|1087198_1087693_-	hypothetical protein	A0A068CCC0	Rhizobium_phage	3.5e-73	79.6
WP_085858415.1\|1087689_1088121_-	DUF4326 domain-containing protein	A0A068CH91	Rhizobium_phage	1.5e-64	80.1
WP_085858417.1\|1088117_1088528_-	hypothetical protein	A0A068CE41	Rhizobium_phage	9.1e-59	81.6
WP_085858419.1\|1088524_1088995_-	hypothetical protein	A0A068C9D4	Rhizobium_phage	5.0e-69	84.9
WP_085858421.1\|1088991_1090107_-	phage Gp37/Gp68 family protein	A0A068CDH0	Rhizobium_phage	2.0e-140	62.2
WP_085858423.1\|1090610_1090868_-	hypothetical protein	NA	NA	NA	NA
WP_085858425.1\|1090864_1091149_-	hypothetical protein	A0A068CE33	Rhizobium_phage	5.4e-18	59.8
WP_085858427.1\|1091152_1091962_-	hypothetical protein	A0A291LAU4	Bordetella_phage	7.4e-36	48.4
WP_085858429.1\|1091954_1092329_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	1.7e-40	66.4
WP_085858431.1\|1092321_1092687_-	hypothetical protein	NA	NA	NA	NA
WP_164517759.1\|1092686_1092836_-	hypothetical protein	A0A068C9D8	Rhizobium_phage	5.1e-12	77.1
WP_125461456.1\|1092825_1093086_-	hypothetical protein	A0A068CCC7	Rhizobium_phage	1.0e-15	56.8
WP_085858435.1\|1093078_1093411_-	hypothetical protein	NA	NA	NA	NA
WP_085858437.1\|1093537_1093741_-	hypothetical protein	A0A068C9E4	Rhizobium_phage	1.7e-18	78.5
WP_085858439.1\|1093751_1094063_-	hypothetical protein	A0A240F4V5	Ochrobactrum_phage	1.0e-06	35.8
WP_085860841.1\|1094130_1094337_-	hypothetical protein	NA	NA	NA	NA
WP_125461494.1\|1094814_1095519_-	helix-turn-helix domain-containing protein	A0A291AUR9	Sinorhizobium_phage	9.1e-91	68.4
WP_085860844.1\|1095605_1095857_+	hypothetical protein	A0A291AUR8	Sinorhizobium_phage	5.8e-16	51.2
WP_085742347.1\|1096149_1096647_+	hypothetical protein	A0A068CCD6	Rhizobium_phage	4.2e-74	90.1
WP_085858441.1\|1096649_1096880_+	hypothetical protein	NA	NA	NA	NA
WP_085860845.1\|1096990_1097728_+	hypothetical protein	NA	NA	NA	NA
WP_085858443.1\|1097720_1098185_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010005989.1\|1098106_1098457_+	helix-turn-helix domain-containing protein	A0A0B5A598	Paracoccus_phage	2.5e-09	45.9
WP_085858445.1\|1098453_1100007_+	hypothetical protein	A0A068C9F4	Rhizobium_phage	2.8e-177	64.4
WP_085858447.1\|1100003_1100354_+	hypothetical protein	NA	NA	NA	NA
WP_085858449.1\|1100343_1100619_+	hypothetical protein	A0A068CHB1	Rhizobium_phage	6.8e-34	81.1
WP_085858451.1\|1100615_1100819_+	hypothetical protein	A0A068CE57	Rhizobium_phage	1.5e-14	61.9
WP_085858453.1\|1100815_1101109_+	hypothetical protein	A0A068C9G0	Rhizobium_phage	1.0e-35	78.1
WP_085858455.1\|1101105_1103247_+	DNA cytosine methyltransferase	A0A068CDI9	Rhizobium_phage	0.0e+00	81.5
WP_085858457.1\|1103246_1104110_+	DNA adenine methylase	A0A068CCE6	Rhizobium_phage	3.2e-122	73.3
WP_085858459.1\|1104121_1104547_-	HicB family protein	A0A0R6PD76	Moraxella_phage	6.9e-17	41.9
WP_125461457.1\|1104618_1104816_-	hypothetical protein	NA	NA	NA	NA
WP_164517760.1\|1104927_1106262_+	helix-turn-helix domain-containing protein	A0A068CE61	Rhizobium_phage	3.8e-61	43.9
WP_085858465.1\|1106245_1106884_+	hypothetical protein	NA	NA	NA	NA
WP_085858467.1\|1107093_1107630_+	hypothetical protein	A0A068CHB9	Rhizobium_phage	1.0e-65	72.5
WP_085858469.1\|1107803_1108439_+	hypothetical protein	NA	NA	NA	NA
WP_085858471.1\|1108440_1110411_+\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	9.4e-186	49.3
WP_085858473.1\|1110392_1111979_+\|portal	phage portal protein	R9TN54	Rhizobium_phage	1.7e-217	69.5
WP_085858475.1\|1111978_1112248_+	hypothetical protein	R9TS76	Rhizobium_phage	1.4e-20	55.1
WP_085858477.1\|1112258_1113179_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	5.7e-109	64.4
WP_085858479.1\|1113197_1113761_+	hypothetical protein	A0A068C988	Rhizobium_phage	3.2e-14	61.3
WP_085858481.1\|1113796_1114465_+\|head	head decoration protein	NA	NA	NA	NA
WP_085858483.1\|1114563_1115583_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.2e-53	37.6
WP_085858484.1\|1115606_1116005_+	hypothetical protein	A0A068CE05	Rhizobium_phage	1.6e-39	56.6
WP_085858487.1\|1116004_1116691_+	hypothetical protein	A0A068C993	Rhizobium_phage	4.1e-88	74.9
WP_125461458.1\|1116721_1116922_+	hypothetical protein	A0A068CDC7	Rhizobium_phage	1.1e-14	59.1
WP_085858489.1\|1116922_1118413_+	hypothetical protein	A0A068CC80	Rhizobium_phage	8.6e-256	90.3
WP_085858491.1\|1118440_1118812_+	hypothetical protein	A0A068CH56	Rhizobium_phage	1.2e-46	74.0
WP_085858493.1\|1118811_1119126_+\|tail	phage tail assembly protein	A0A068CE07	Rhizobium_phage	2.1e-39	74.3
WP_085858495.1\|1119232_1121089_+\|tail	phage tail tape measure protein	A0A068C997	Rhizobium_phage	2.2e-240	82.3
WP_164517761.1\|1121090_1121549_+	hypothetical protein	A0A068CDD2	Rhizobium_phage	1.1e-57	74.3
WP_085858498.1\|1121557_1122181_+	hypothetical protein	A0A068CC84	Rhizobium_phage	5.6e-68	69.6
WP_085858500.1\|1122190_1123243_+	hypothetical protein	A0A068CH59	Rhizobium_phage	6.6e-162	81.1
WP_085858502.1\|1123239_1123701_+	hypothetical protein	A0A068CE12	Rhizobium_phage	1.9e-60	92.8
WP_085858505.1\|1123850_1124102_+	hypothetical protein	A0A068C9A1	Rhizobium_phage	6.4e-15	53.7
WP_094299089.1\|1124105_1124642_+	hypothetical protein	A0A068CDD6	Rhizobium_phage	1.6e-79	78.5
WP_164517762.1\|1124613_1125696_+	hypothetical protein	A0A068CC89	Rhizobium_phage	2.9e-181	90.6
WP_085858509.1\|1125685_1126474_+	DUF2313 domain-containing protein	A0A068CH63	Rhizobium_phage	2.8e-125	87.4
WP_085858511.1\|1126489_1127368_+	hypothetical protein	A0A068CE15	Rhizobium_phage	1.6e-100	78.9
WP_085858513.1\|1128393_1129191_+	hypothetical protein	NA	NA	NA	NA
WP_125461459.1\|1129187_1129421_-	hypothetical protein	NA	NA	NA	NA
WP_085858518.1\|1129581_1130139_+	acyltransferase	A0A2R8FE91	Brazilian_cedratvirus	3.5e-05	67.9
WP_085860847.1\|1130730_1132590_+	hypothetical protein	V9QJK2	Rhizobium_phage	8.7e-258	72.5
WP_085858519.1\|1132619_1133588_+	chitinase	A0A291AUV5	Sinorhizobium_phage	2.4e-97	59.8
WP_164517763.1\|1133589_1133838_+	hypothetical protein	NA	NA	NA	NA
WP_085858525.1\|1134005_1134281_+	hypothetical protein	R9TQH1	Rhizobium_phage	3.0e-13	49.3
WP_085858528.1\|1134277_1134472_+	hypothetical protein	A0A068CCA1	Rhizobium_phage	2.7e-05	46.9
WP_085858530.1\|1134468_1134945_+	hypothetical protein	R9TRQ6	Rhizobium_phage	1.3e-51	66.9
WP_085860848.1\|1135342_1135534_-	hypothetical protein	B4UTS3	Rhizobium_phage	8.6e-12	60.4
WP_085858536.1\|1135772_1136822_+	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	7.9e-131	65.7
1136930:1136978	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1188278 : 1235211

EBPR_podovirus(15.38%)

holin,terminase,capsid,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085858621.1\|1188278_1188749_+\|terminase	terminase small subunit protein	F8TUR4	EBPR_podovirus	3.5e-30	55.6
WP_085858623.1\|1188714_1190286_+\|terminase	terminase	A0A0H5ARR1	Pseudomonas_phage	4.8e-116	44.9
WP_085858625.1\|1190285_1192388_+	hypothetical protein	X2CY04	Brucella_phage	4.2e-91	33.0
WP_085858627.1\|1192805_1193828_+	hypothetical protein	NA	NA	NA	NA
WP_064681819.1\|1193860_1194835_+\|capsid	phage major capsid protein	Q94MS1	Myxococcus_phage	3.6e-85	52.3
WP_085858629.1\|1194857_1195643_+	hypothetical protein	NA	NA	NA	NA
WP_085858631.1\|1195845_1196409_+	hypothetical protein	NA	NA	NA	NA
WP_085858633.1\|1196614_1197319_+	hypothetical protein	NA	NA	NA	NA
WP_085858635.1\|1197315_1199139_+	hypothetical protein	F8TUS4	EBPR_podovirus	2.0e-36	28.7
WP_085858637.1\|1199135_1199543_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_085858639.1\|1199517_1200525_+\|tail	tail fiber domain-containing protein	A0A1L7QQ51	Brucella_phage	1.5e-54	40.5
WP_085858641.1\|1200958_1202380_+	hypothetical protein	NA	NA	NA	NA
WP_164517766.1\|1202385_1202559_-	hypothetical protein	NA	NA	NA	NA
WP_085858642.1\|1202987_1203746_+	hypothetical protein	NA	NA	NA	NA
WP_085858644.1\|1204007_1205363_+	hypothetical protein	L7TMF7	Rhizobium_phage	1.9e-76	56.4
WP_164517812.1\|1205759_1206704_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_085858646.1\|1206905_1207904_-	acyltransferase	NA	NA	NA	NA
WP_011424451.1\|1208002_1208215_+	hypothetical protein	NA	NA	NA	NA
WP_125461460.1\|1210490_1210730_-	hypothetical protein	NA	NA	NA	NA
WP_085858651.1\|1210874_1211129_+	hypothetical protein	NA	NA	NA	NA
WP_085858653.1\|1211103_1211568_+	lysozyme	A0A0K1LL70	Rhodobacter_phage	5.2e-26	43.4
WP_085858655.1\|1211567_1211930_+	hypothetical protein	NA	NA	NA	NA
WP_085860860.1\|1211934_1212162_+	hypothetical protein	NA	NA	NA	NA
WP_085858657.1\|1214028_1214457_+	DUF1515 domain-containing protein	NA	NA	NA	NA
WP_020920687.1\|1214631_1214817_+	hypothetical protein	NA	NA	NA	NA
WP_085858659.1\|1214964_1215165_-	hypothetical protein	NA	NA	NA	NA
WP_085858661.1\|1215702_1217205_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	7.1e-24	28.3
WP_085858663.1\|1217658_1218696_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_085858665.1\|1218771_1219692_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_085860861.1\|1219752_1220706_-	NmrA/HSCARG family protein	A0A1V0SLC2	Klosneuvirus	4.5e-24	31.8
WP_085858667.1\|1220941_1221913_-	quinone oxidoreductase	NA	NA	NA	NA
WP_085860862.1\|1221960_1222851_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_085858669.1\|1222881_1225179_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_085858671.1\|1225314_1225956_-	AhpC/TSA family protein	NA	NA	NA	NA
WP_064801094.1\|1226296_1226737_-	hypothetical protein	NA	NA	NA	NA
WP_164517767.1\|1227028_1227301_-	hypothetical protein	NA	NA	NA	NA
WP_085858675.1\|1227678_1229175_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.0e-27	28.3
WP_010034611.1\|1229176_1230130_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_085858677.1\|1230244_1231003_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_085858679.1\|1231422_1231869_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_085858681.1\|1231869_1233225_-	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-06	26.6
WP_064809861.1\|1233561_1235211_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.1e-65	32.5

DBSCAN-SWA_4

2001204 : 2008466

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802110.1\|2001204_2002218_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.6e-25	41.5
WP_085860903.1\|2002236_2003094_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_064810189.1\|2003090_2003795_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.6e-40	46.4
WP_011425113.1\|2003977_2004169_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_085859342.1\|2004220_2004835_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_064802115.1\|2004831_2005659_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.2e-53	46.1
WP_085859343.1\|2005754_2007038_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-97	45.6
WP_085859344.1\|2007042_2007801_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.7e-23	30.2
WP_085859345.1\|2007812_2008466_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-16	35.7

DBSCAN-SWA_5

2277002 : 2288000

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064802578.1\|2277002_2279924_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2
WP_064802580.1\|2280206_2280719_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	3.8e-46	57.1
WP_085859502.1\|2280939_2281506_+	DUF2569 family protein	NA	NA	NA	NA
WP_064810390.1\|2281640_2282288_-	MarC family protein	NA	NA	NA	NA
WP_064802585.1\|2282525_2285315_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	3.9e-76	42.2
WP_003539654.1\|2285660_2285816_-	hypothetical protein	NA	NA	NA	NA
WP_064802587.1\|2286351_2286846_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.0e-24	37.2
WP_064810392.1\|2286889_2287462_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-42	54.7
WP_064802591.1\|2287490_2288000_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.3e-45	58.8

DBSCAN-SWA_6

2912368 : 2936186

Pseudomonas_phage(30.77%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085860949.1\|2912368_2913121_+	DUF159 family protein	A0A291AUP1	Sinorhizobium_phage	7.8e-40	41.0
WP_085859889.1\|2913125_2913341_+	hypothetical protein	NA	NA	NA	NA
WP_085859891.1\|2913551_2913926_+	nuclease	G8DH70	Emiliania_huxleyi_virus	4.6e-25	47.9
WP_085859892.1\|2914010_2914466_-	hypothetical protein	NA	NA	NA	NA
WP_085859893.1\|2914720_2915038_+	succinoglycan biosynthesis protein exoi	NA	NA	NA	NA
WP_164517792.1\|2915273_2915621_-	DUF1515 domain-containing protein	A0A291AUW4	Sinorhizobium_phage	2.9e-21	53.3
WP_085859894.1\|2915651_2915915_-	hypothetical protein	NA	NA	NA	NA
WP_085859895.1\|2915920_2916295_-	hypothetical protein	NA	NA	NA	NA
WP_085859896.1\|2916296_2916893_-	lysozyme	L7TM06	Rhizobium_phage	3.7e-61	58.8
WP_085859897.1\|2916879_2917083_-	hypothetical protein	NA	NA	NA	NA
WP_085859898.1\|2917136_2917565_-	hypothetical protein	A0A1W6DX38	Sphingobium_phage	3.9e-44	65.5
WP_085859899.1\|2917580_2922017_-	hypothetical protein	Q5DN19	Alphaproteobacteria_virus	2.1e-36	26.9
WP_085859900.1\|2922029_2922953_-	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_085859901.1\|2922949_2923564_-	hypothetical protein	NA	NA	NA	NA
WP_085859902.1\|2923564_2926321_-	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	5.6e-11	34.1
WP_125461484.1\|2926325_2926724_-	hypothetical protein	NA	NA	NA	NA
WP_085859904.1\|2926666_2927089_-	hypothetical protein	NA	NA	NA	NA
WP_164517793.1\|2927158_2927332_-	hypothetical protein	NA	NA	NA	NA
WP_085859905.1\|2927331_2928273_-	hypothetical protein	A0A0S0N8B7	Pseudomonas_phage	1.2e-34	33.6
WP_085859906.1\|2928320_2928734_-	hypothetical protein	NA	NA	NA	NA
WP_085859907.1\|2928730_2929123_-	HK97 gp10 family phage protein	A0A220IHC8	Escherichia_phage	2.4e-16	39.5
WP_085859908.1\|2929125_2929386_-	hypothetical protein	NA	NA	NA	NA
WP_085859909.1\|2929382_2929772_-	hypothetical protein	NA	NA	NA	NA
WP_085859910.1\|2929775_2930351_-	hypothetical protein	A0A1B0Z013	Pseudomonas_phage	3.0e-07	32.9
WP_085859911.1\|2930341_2930743_-	hypothetical protein	NA	NA	NA	NA
WP_085859912.1\|2930747_2931152_-	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	4.2e-08	58.5
WP_085859913.1\|2931210_2932203_-	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	2.1e-40	34.9
WP_085859914.1\|2932247_2933012_-	hypothetical protein	NA	NA	NA	NA
WP_125461485.1\|2933110_2933671_-	hypothetical protein	NA	NA	NA	NA
WP_085859916.1\|2933801_2934071_-	hypothetical protein	NA	NA	NA	NA
WP_085859917.1\|2934073_2934280_-	hypothetical protein	NA	NA	NA	NA
WP_085859918.1\|2934272_2936186_-\|capsid	minor capsid protein	A0A0S0N1M5	Pseudomonas_phage	1.1e-74	41.7

DBSCAN-SWA_7

4055803 : 4066132

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085860546.1\|4055803_4056514_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	1.5e-48	47.3
WP_064805162.1\|4056513_4056870_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_085860547.1\|4056866_4057595_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.2e-42	38.2
WP_085860548.1\|4057705_4058929_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.9e-15	30.7
WP_085860549.1\|4059032_4060007_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.5e-139	75.1
WP_085860550.1\|4060200_4062369_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.5e-212	51.8
WP_064811425.1\|4062347_4062761_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_085860551.1\|4062774_4062996_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.3e-16	52.1
WP_085861003.1\|4063894_4066132_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.2e-124	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP021027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP021024

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection