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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020030 Geobacillus thermodenitrificans strain T12 chromosome, complete genome 5 crisprs cas6,cas2,cas1,cas9,csa3,DEDDh,WYL,cas3,DinG,c2c9_V-U4 0 9 15 0
NZ_CP020031 Geobacillus thermodenitrificans strain T12 plasmid pGeo12a, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP020032 Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP020030
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020030_1 345230-345925 TypeII NA
10 spacers
cas6,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020030_2 393185-394212 Orphan NA
15 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020030_3 1460464-1460561 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020030_4 2204196-2204382 TypeV-U4 NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020030_5 2919684-2919785 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020030_1 1.7|345465|30|NZ_CP020030|CRISPRCasFinder,CRT 345465-345494 30 NC_009552 Geobacillus virus E2, complete genome 40206-40235 0 1.0
NZ_CP020030_1 1.9|345596|30|NZ_CP020030|CRISPRCasFinder,CRT 345596-345625 30 NC_009552 Geobacillus virus E2, complete genome 6718-6747 2 0.933
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 MN693925 Marine virus AFVG_250M1114, complete genome 6490-6517 6 0.786
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP010068 Yersinia pseudotuberculosis str. PA3606 plasmid unnamed2, complete sequence 1289-1318 6 0.8
NZ_CP020030_1 1.8|345531|29|NZ_CP020030|CRISPRCasFinder,CRT 345531-345559 29 NZ_CP044979 Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence 318071-318099 6 0.793
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP025893 Escherichia coli strain 503025 plasmid p503025_105, complete sequence 48341-48368 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP025866 Escherichia coli strain 504211 plasmid p504211_78, complete sequence 36140-36167 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP006002 Escherichia coli B7A plasmid pEB4, complete sequence 43613-43640 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP025884 Escherichia coli strain 503440 plasmid p503440_78, complete sequence 30281-30308 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP025872 Escherichia coli strain 503829 plasmid p503829_77, complete sequence 70854-70881 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP025914 Escherichia coli strain 203740 plasmid p203740_80, complete sequence 45420-45447 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 NZ_CP024231 Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence 57383-57410 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 CP025899 Escherichia coli strain 500465 plasmid p500465_77, complete sequence 45925-45952 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 LN908839 Escherichia coli plasmid pCss_E1189 77201-77228 7 0.75
NZ_CP020030_1 1.2|345335|28|NZ_CP020030|PILER-CR 345335-345362 28 MN693868 Marine virus AFVG_250M1130, complete genome 14256-14283 7 0.75
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP025893 Escherichia coli strain 503025 plasmid p503025_105, complete sequence 48339-48368 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP025866 Escherichia coli strain 504211 plasmid p504211_78, complete sequence 36138-36167 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP006002 Escherichia coli B7A plasmid pEB4, complete sequence 43611-43640 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP025884 Escherichia coli strain 503440 plasmid p503440_78, complete sequence 30281-30310 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP025872 Escherichia coli strain 503829 plasmid p503829_77, complete sequence 70854-70883 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP025914 Escherichia coli strain 203740 plasmid p203740_80, complete sequence 45420-45449 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 NZ_CP024231 Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence 57383-57412 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 CP025899 Escherichia coli strain 500465 plasmid p500465_77, complete sequence 45925-45954 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 LN908839 Escherichia coli plasmid pCss_E1189 77201-77230 7 0.767
NZ_CP020030_1 1.10|345662|30|NZ_CP020030|CRISPRCasFinder,CRT 345662-345691 30 NZ_AP018682 Vibrio casei strain DSM 22364 plasmid 1, complete sequence 134715-134744 7 0.767
NZ_CP020030_1 1.11|345728|30|NZ_CP020030|CRISPRCasFinder,CRT 345728-345757 30 NZ_CP045303 Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence 68279-68308 7 0.767
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 MN693925 Marine virus AFVG_250M1114, complete genome 6490-6519 8 0.733
NZ_CP020030_1 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT 345333-345362 30 MN693868 Marine virus AFVG_250M1130, complete genome 14256-14285 8 0.733
NZ_CP020030_2 2.5|393479|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT 393479-393515 37 NZ_CP026129 Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence 59458-59494 9 0.757
NZ_CP020030_2 2.3|393347|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT 393347-393383 37 NZ_CP050184 Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence 200137-200173 10 0.73
NZ_CP020030_2 2.3|393347|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT 393347-393383 37 NZ_CP016589 Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence 393512-393548 10 0.73

1. spacer 1.7|345465|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 0, identity: 1.0

ttggcggtgcgaattctaaccgtcccggaa	CRISPR spacer
ttggcggtgcgaattctaaccgtcccggaa	Protospacer
******************************

2. spacer 1.9|345596|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 2, identity: 0.933

caacaccttccgcgctgtctcgtctacttt	CRISPR spacer
caacaccttccgtgctgtctcatctacttt	Protospacer
************.********.********

3. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to MN693925 (Marine virus AFVG_250M1114, complete genome) position: , mismatch: 6, identity: 0.786

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
aaagctaaaataaaagattctgttattg	Protospacer
..********.******* *******  

4. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP010068 (Yersinia pseudotuberculosis str. PA3606 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ttggagctaaaacaaaagatgctg-ttatac	CRISPR spacer
atggagctaaagcaaatgatgctgaggata-	Protospacer
 **********.**** *******   *** 

5. spacer 1.8|345531|29|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 6, identity: 0.793

tcacggagctttacacaaataaagccgga	CRISPR spacer
ttactgagctttacacaaataaaattaga	Protospacer
*.** ******************....**

6. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP025893 (Escherichia coli strain 503025 plasmid p503025_105, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

7. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP025866 (Escherichia coli strain 504211 plasmid p504211_78, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

8. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP006002 (Escherichia coli B7A plasmid pEB4, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

9. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP025884 (Escherichia coli strain 503440 plasmid p503440_78, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

10. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP025872 (Escherichia coli strain 503829 plasmid p503829_77, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

11. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP025914 (Escherichia coli strain 203740 plasmid p203740_80, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

12. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to NZ_CP024231 (Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

13. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to CP025899 (Escherichia coli strain 500465 plasmid p500465_77, complete sequence) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

14. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to LN908839 (Escherichia coli plasmid pCss_E1189) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
agtaacaaaataaaagatgctgttataa	Protospacer
.* . .****.**************** 

15. spacer 1.2|345335|28|NZ_CP020030|PILER-CR matches to MN693868 (Marine virus AFVG_250M1130, complete genome) position: , mismatch: 7, identity: 0.75

ggagctaaaacaaaagatgctgttatac	CRISPR spacer
atagctaaaacaaatgaagctgttaatt	Protospacer
. ************ ** *******  .

16. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP025893 (Escherichia coli strain 503025 plasmid p503025_105, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

17. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP025866 (Escherichia coli strain 504211 plasmid p504211_78, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

18. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP006002 (Escherichia coli B7A plasmid pEB4, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

19. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP025884 (Escherichia coli strain 503440 plasmid p503440_78, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

20. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP025872 (Escherichia coli strain 503829 plasmid p503829_77, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

21. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP025914 (Escherichia coli strain 203740 plasmid p203740_80, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

22. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP024231 (Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

23. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to CP025899 (Escherichia coli strain 500465 plasmid p500465_77, complete sequence) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

24. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to LN908839 (Escherichia coli plasmid pCss_E1189) position: , mismatch: 7, identity: 0.767

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
ttagtaacaaaataaaagatgctgttataa	Protospacer
**.* . .****.**************** 

25. spacer 1.10|345662|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_AP018682 (Vibrio casei strain DSM 22364 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgattagcaatttgacttgggaatttagc	CRISPR spacer
ttgattagcattttgacttggggggtgact	Protospacer
********** ***********.. * * .

26. spacer 1.11|345728|30|NZ_CP020030|CRISPRCasFinder,CRT matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgatcgacgccaggaactcccggaatttc	CRISPR spacer
ttgatcgacgccagcaactccagagccttg	Protospacer
************** ****** *.. .** 

27. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to MN693925 (Marine virus AFVG_250M1114, complete genome) position: , mismatch: 8, identity: 0.733

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
gaaaagctaaaataaaagattctgttattg	Protospacer
  ..********.******* *******  

28. spacer 1.5|345333|30|NZ_CP020030|CRISPRCasFinder,CRT matches to MN693868 (Marine virus AFVG_250M1130, complete genome) position: , mismatch: 8, identity: 0.733

ttggagctaaaacaaaagatgctgttatac	CRISPR spacer
gtatagctaaaacaaatgaagctgttaatt	Protospacer
 *. ************ ** *******  .

29. spacer 2.5|393479|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 9, identity: 0.757

aagaagtttataaaaaagaaattgatactaatcataa	CRISPR spacer
ttgatgccaataaaaaagaaattgaaaccaatcatga	Protospacer
  ** *.. **************** **.******.*

30. spacer 2.3|393347|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 10, identity: 0.73

ttacaatttaaggagtgaatctaatgaataaatttga	CRISPR spacer
tctgtacgaaagaagtgaatctaatgaagaaatttaa	Protospacer
*.   *.  ***.*************** ******.*

31. spacer 2.3|393347|37|NZ_CP020030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 10, identity: 0.73

ttacaatttaaggagtgaatctaatgaataaatttga	CRISPR spacer
tctgtacgaaagaagtgaatctaatgaagaaatttaa	Protospacer
*.   *.  ***.*************** ******.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 374674 : 419806 32 Erysipelothrix_phage(15.38%) protease,holin,transposase NA
DBSCAN-SWA_2 514073 : 616061 90 Paenibacillus_phage(15.38%) transposase NA
DBSCAN-SWA_3 874432 : 927526 54 Tupanvirus(12.5%) coat,transposase NA
DBSCAN-SWA_4 933925 : 943757 7 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_5 999132 : 1039371 34 Paenibacillus_phage(18.18%) protease,integrase,transposase attL 995515:995574|attR 1023403:1024942
DBSCAN-SWA_6 1732411 : 1772645 32 Paenibacillus_phage(20.0%) coat,transposase NA
DBSCAN-SWA_7 1783093 : 1841515 50 Synechococcus_phage(15.38%) integrase,transposase attL 1789519:1789578|attR 1834475:1835024
DBSCAN-SWA_8 2167855 : 2220399 55 Streptococcus_phage(37.5%) integrase,transposase attL 2158849:2158863|attR 2183790:2183804
DBSCAN-SWA_9 2342490 : 2353196 13 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_10 2415344 : 2425823 12 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_11 2698053 : 2755292 55 Pacmanvirus(20.0%) protease,coat,tRNA NA
DBSCAN-SWA_12 2949577 : 2958793 13 Staphylococcus_phage(57.14%) holin NA
DBSCAN-SWA_13 3387056 : 3398432 12 Rhodobacter_phage(100.0%) transposase NA
DBSCAN-SWA_14 3537057 : 3592072 54 Bacillus_phage(30.0%) protease,coat,transposase,tRNA NA
DBSCAN-SWA_15 3611138 : 3620933 8 uncultured_Mediterranean_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP020031
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 23978 : 46522 22 Bacillus_phage(33.33%) tRNA,protease,integrase,transposase attL 40305:40318|attR 46608:46621
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage