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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP021108 Bordetella genomosp. 8 strain AU19157 chromosome, complete genome 5 crisprs cas3,WYL,DinG,csa3,DEDDh 0 3 2 0

Results visualization

1. NZ_CP021108
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021108_1 658990-659178 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021108_2 1973472-1973584 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021108_3 2285206-2285307 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021108_4 2650780-2650883 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP021108_5 6075123-6075214 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP023072 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence 474918-474947 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP029453 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence 336375-336404 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP023069 Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence 345162-345191 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP023065 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence 344066-344095 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NC_000914 Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence 74301-74330 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP029233 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence 352879-352908 6 0.8
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 NZ_CP045386 Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence 200413-200442 7 0.767
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 LR778216 Xylella phage Cota genome assembly, chromosome: 1 41859-41888 7 0.767
NZ_CP021108_1 1.2|659071|30|NZ_CP021108|CRISPRCasFinder 659071-659100 30 MG592522 Vibrio phage 1.154.O._10N.222.52.B12, partial genome 35659-35688 7 0.767
NZ_CP021108_1 1.3|659125|30|NZ_CP021108|CRISPRCasFinder 659125-659154 30 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 511131-511160 7 0.767
NZ_CP021108_1 1.1|659014|33|NZ_CP021108|CRISPRCasFinder 659014-659046 33 NZ_CP032325 Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence 80930-80962 10 0.697

1. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

2. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP029453 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

3. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP023069 (Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

4. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

5. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NC_000914 (Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

6. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP029233 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence) position: , mismatch: 6, identity: 0.8

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
accagtgccgctgaatggcggcgtaaagac	Protospacer
 ****** ***************..  ***

7. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP045386 (Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence) position: , mismatch: 7, identity: 0.767

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
tccaatggcgctgaatgggggcgctctttt	Protospacer
****.************* ***** .*  .

8. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to LR778216 (Xylella phage Cota genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.767

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
taacgtgccgctgactggcggcgcgttgta	Protospacer
*   *** ****** *************  

9. spacer 1.2|659071|30|NZ_CP021108|CRISPRCasFinder matches to MG592522 (Vibrio phage 1.154.O._10N.222.52.B12, partial genome) position: , mismatch: 7, identity: 0.767

tccagtggcgctgaatggcggcgcgttgac	CRISPR spacer
tggtgtggcgttgaatggctgcgcgttaag	Protospacer
*   ******.******** *******.* 

10. spacer 1.3|659125|30|NZ_CP021108|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.767

cccggtggcactgaatggcggcgtggcgac	CRISPR spacer
ccttctggcactgaatgccggcgtggaagc	Protospacer
**.  ************ ******** ..*

11. spacer 1.1|659014|33|NZ_CP021108|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.697

atcgctgaccgtggacgccgccagcacgctcct	CRISPR spacer
ggtcctgaccctggacgccgacagcacggtggc	Protospacer
. . ****** ********* ******* *  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1139857 : 1147428 8 Mollivirus(16.67%) NA NA
DBSCAN-SWA_2 3776800 : 3784625 7 Faecalibacterium_phage(16.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage