CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP018791	Campylobacter sp. RM8964 chromosome, complete genome	4 crisprs	cas1,cas2,DEDDh,cas4	3	11	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018791_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018791_1

523606-524761

orTypeII

Consensus_repeat	Method
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CRISPRCasFinder
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CRT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	PILER-CR

17 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP018791_1

>merge|NZ_CP018791|1|523606-524761|CRISPRCasFinder,CRT,PILER-CR
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGCCAAAGCTGAAGGTGGTAAAAATGTAATTTAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCTCATCGCTAGGGCTAAAGTCGTAAGAATTAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCTTATAACCGCTATAATCTAAACTAACATTAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCAAAATAGCCGATACTTTGCCATTTAGATTTATTATAACATATAGAAACTAAGGGGGTTCTTATAGCACTTAAAGCATATTTAATCGCCTTTGCTAGATTATAACATATAGAAACTAAGGGGGTTCTTATAGCTATCTGCTGTCCATATATTTTTAATTTCAAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCCTTTTTTATACTCATTAATCCAATCTATAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCCTGAAATATCGCGCAAATATAACATCAATATTATAACATATAGAAACTAAGGGGGTTCTTATAGCAGCTTATCTAATCCACTTAAAGGCGTGATTATTATAACATATAGAAACTAAGGGGGTTCTTATAGCATTAAACTTATACCCTTTACAAACAGCTGGATTATAACATATAGAAACTAAGGGGGTTCTTATAGCGCCATATAAGCCTCGGTTATTGATAACTCTATTATAACATATAGAAACTAAGGGGGTTCTTATAGCAACTTATACCGAGTAGTTCGCAAAGAGGGAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCAACTTATACCGAGTAGTTCGCAAAGAGGGAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCGCTAGTCGCTTTGTCTTGTATCTTGAGAGTATTATAACATATAGAAACTAAGGGGGTTCTTATAGCTACCTATACCGATAAAGACGGAAATGTTCAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCAACATATAATAATAAAAATGCTATAATTCAATTATAACATATAGAAACTAAGGGGGTTCTTATAGCACATTTGCAAGTATTATGTTATCAAAGGGGATTATAACATATATAAACTAAGGTTTTTTATGATTA

>NZ_CP018791|1|1|523606-524761|CRISPRCasFinder
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CAAAGCTGAAGGTGGTAAAAATGTAATTTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TCATCGCTAGGGCTAAAGTCGTAAGAATTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TTATAACCGCTATAATCTAAACTAACATTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AAAATAGCCGATACTTTGCCATTTAGATTT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ACTTAAAGCATATTTAATCGCCTTTGCTAG
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TATCTGCTGTCCATATATTTTTAATTTCAA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTTTTTTATACTCATTAATCCAATCTATA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTGAAATATCGCGCAAATATAACATCAAT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AGCTTATCTAATCCACTTAAAGGCGTGATT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ATTAAACTTATACCCTTTACAAACAGCTGG
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCCATATAAGCCTCGGTTATTGATAACTCT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCTAGTCGCTTTGTCTTGTATCTTGAGAGT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TACCTATACCGATAAAGACGGAAATGTTCA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACATATAATAATAAAAATGCTATAATTCA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ACATTTGCAAGTATTATGTTATCAAAGGGG
ATTATAACATATATAAACTAAGGTTTTTTATGATTA

>NZ_CP018791|1|1|523606-524761|CRT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CAAAGCTGAAGGTGGTAAAAATGTAATTTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TCATCGCTAGGGCTAAAGTCGTAAGAATTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TTATAACCGCTATAATCTAAACTAACATTA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AAAATAGCCGATACTTTGCCATTTAGATTT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ACTTAAAGCATATTTAATCGCCTTTGCTAG
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TATCTGCTGTCCATATATTTTTAATTTCAA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTTTTTTATACTCATTAATCCAATCTATA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTGAAATATCGCGCAAATATAACATCAAT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AGCTTATCTAATCCACTTAAAGGCGTGATT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ATTAAACTTATACCCTTTACAAACAGCTGG
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCCATATAAGCCTCGGTTATTGATAACTCT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCTAGTCGCTTTGTCTTGTATCTTGAGAGT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	TACCTATACCGATAAAGACGGAAATGTTCA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACATATAATAATAAAAATGCTATAATTCA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ACATTTGCAAGTATTATGTTATCAAAGGGG
ATTATAACATATATAAACTAAGGTTTTTTATGATTA

>NZ_CP018791|1|1|524002-524563|PILER-CR
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTTTTTTATACTCATTAATCCAATCTATA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	CTGAAATATCGCGCAAATATAACATCAAT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AGCTTATCTAATCCACTTAAAGGCGTGATT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	ATTAAACTTATACCCTTTACAAACAGCTGG
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCCATATAAGCCTCGGTTATTGATAACTCT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	AACTTATACCGAGTAGTTCGCAAAGAGGGA
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC	GCTAGTCGCTTTGTCTTGTATCTTGAGAGT
ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018791.1\|WP_086246714.1\|517980_518700_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP018791.1\|WP_086246708.1\|533910_535206_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP018791.1\|WP_086248498.1\|525646_526435_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP018791.1\|WP_086246717.1\|515786_516512_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP018791.1\|WP_086333497.1\|516521_517247_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP018791.1\|WP_192940509.1\|533127_533724_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP018791.1\|WP_086334221.1\|524819_525635_+\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125
NZ_CP018791.1\|WP_086248506.1\|517259_517988_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP018791.1\|WP_086333503.1\|532271_533138_+\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143597
NZ_CP018791.1\|WP_086229221.1\|523098_523428_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP018791.1\|WP_086333498.1\|518855_522173_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP018791.1\|WP_086333499.1\|522187_523096_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP018791.1\|WP_086333496.1\|515181_515790_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP018791.1\|WP_086333500.1\|526479_526827_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086276268.1\|529947_531075_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP018791.1\|WP_086333495.1\|514394_515180_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP018791.1\|WP_192940526.1\|529348_529933_-\|RloB-domain-containing-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086248514.1\|513734_514382_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
NZ_CP018791.1\|WP_086334222.1\|531300_532272_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP018791.1\|WP_086333501.1\|527036_527642_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018791.1\|WP_086246714.1\|517980_518700_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.11517e-66
NZ_CP018791.1\|WP_086246708.1\|533910_535206_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.75019e-80
NZ_CP018791.1\|WP_086248498.1\|525646_526435_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.5423e-161
NZ_CP018791.1\|WP_086246717.1\|515786_516512_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.72846e-76
NZ_CP018791.1\|WP_086333497.1\|516521_517247_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.84127e-88
NZ_CP018791.1\|WP_086334221.1\|524819_525635_+\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	4.15275e-69
NZ_CP018791.1\|WP_086248506.1\|517259_517988_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.81198e-147
NZ_CP018791.1\|WP_086333503.1\|532271_533138_+\|carbon-nitrogen-hydrolase	gnl\|CDD\|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	2.03673e-153
NZ_CP018791.1\|WP_086229221.1\|523098_523428_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.4426e-30
NZ_CP018791.1\|WP_086333498.1\|518855_522173_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	9.26084e-87
NZ_CP018791.1\|WP_086333499.1\|522187_523096_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.33855e-85
NZ_CP018791.1\|WP_086333496.1\|515181_515790_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	2.83942e-53
NZ_CP018791.1\|WP_086276268.1\|529947_531075_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.41424e-13
NZ_CP018791.1\|WP_086333495.1\|514394_515180_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	8.40887e-97
NZ_CP018791.1\|WP_086248514.1\|513734_514382_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	1.90826e-33
NZ_CP018791.1\|WP_086334222.1\|531300_532272_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	1.3035e-139
NZ_CP018791.1\|WP_192940509.1\|533127_533724_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	3.17736e-46

>NZ_CP018791.1|WP_086229221.1|523098_523428_+|CRISPR-associated-endonuclease-Cas2
MNSEILMRIMVMFDLPVGSKKERKEAAKFRSSLLKCGFFMLQFSVYARIVRGYDKAEVITNKIKSKLPSKGNVRMITITEKQYANMVVLKGEPKNSTEKLSLEKSLFEF
>NZ_CP018791.1|WP_086333499.1|522187_523096_+|type-II-CRISPR-associated-endonuclease-Cas1
MAQKLNIYVSSDSKLSIKNSNLLLQKSDDIINIPIDIISSIVVDSYHSYFSQNLLSCLSRQGITLIICDETHMPTTLLLPLCTHSVGNLNLRAQLKCKNQTKAILWQNIVKAKLNNQANLLDIFGLNSVDILKNLANKVLLNDKDNKEAYGARIYFLSAFGDEFARRDGGFINSMLNFGYSLVRSKIARTIAAKGLMPQIGIYHDSFLNNFNLADDMIEPYRPFVDAYVFWYLQNSGEIDSEFDSTHKKFLISIFDKTVLIDGKRFLLDIAIEQSIESLLRVFKDKENTRLLMPILDKDFLI
>NZ_CP018791.1|WP_086333498.1|518855_522173_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MRVLGLDIGVTSIGWAIVEFDQDAKNEIDKKSNNKIIDLGVRLFDGVAEDRSGKLLAQDWRNSKSSRQRYKRKKERLKAIENEFKSIGFLDNSYNKEQFFAKFHFENKDIFILRAKALEEKLSPKQIFACIYYLAKHRGYRSGPVPQSSKSKSNNKDSVKTINEIQKTKSLLGYDIDKNSYQKTIAQYVVQNINNSIYRNRDGKVVFMAQKEMIEYEAREILRYQSKFYKEIDDKFVDKIIDIINLKAPAIDEKSINEMIGDCAILKDERRAFKNSITATKSMIFQIINNTIKKYQLDPTDNLYIDAMNIIIKKGKLTFENLNSILSSNITTKDKEKLIDNKATNMLKDICKILNIDNYNDMNSKEDELNELIYIFAIYKDFMHCEEKFAQHLAKYSYTDSQKDEILNLCFNKISGTSNLSLKALKGIEPYLIDGYVYTIACDEYIKHLDDKSKIKANSIKSKYLKVLIKKENPRVRKIVNQAIILINTLIKNGAKFDQINIELARDLPLTTKEKKRYSESQKRNEENKKSAKAIVGQNAKNKDILKARLLIEQDYQCPYCNIKLNSSDIADNKVEIDHILPLSLSFDDSYTNKVLTHKECNQLKGQRIPRSGFLDDEWFVSHINSIPQSMSKRKRDNLLITLDEFEKHIENIEKSRALNETRYASRLIKNYIEENLKFEGNCSDISDIKNHNIKRNRVQVRNGSLTHILRNLWHIGDKNIDEQRYIKDRDIHTHHAQDAVIIAFSTQGMVKSICDISKRANNEYRVLPNSGEVIKQSKNSSIIELAQLSKDTNDRINRAFHSSMPMVNMNETLNERLKWIIPSKKVDRLHNSRSVHEDTICSIRLKENGNYRRLKDKSEFEYLIKNDIDNLYVIKRVSVKNAISKTVKENKENKENKENKSIIENLIDKDSRNKELYSMLKNNDEDGLNIYFHGKSLDKAKISILSKYDNRMRYVRGGVANLDRQDRYLIYKKDGIYHVGVVYSGDDIKDDKSAVIDILKRGEKHTNHQKSNNGFEYVMTLYKNDLILYIGRDKKEHIGYISEFNINTANFKLNNPLINDKEYKVGPTTWKSIERLDIDILGNVYRKGKNFTKEAAAIIQNELN
>NZ_CP018791.1|WP_086246714.1|517980_518700_-|amino-acid-ABC-transporter-permease
MTKLLNEKFFKFIFSVSIIIIGVWLTFPSELTSAQKSAYTNAYFTTIMLTFGGISIGIVLGFILAFLKFLNIKILSFFIDEYIDIIRGTPVLLQLMIFAFVILATLSDNFYAAVIALGLNSSAYVAEIVRSGINSVDRGQMEAARAMGLSYSVSMRLIIFPQAIKNILPALANEFISLFKETSVVGLIGIFDLTMQSKSLQATLFTPEPILFAGVVYYANVKLFSVMAKLLENRLNRHD
>NZ_CP018791.1|WP_086248506.1|517259_517988_-|amino-acid-ABC-transporter-ATP-binding-protein
MIKTINLTKNYGDLCVLNGINTQINRGEVVAVIGPSGGGKSTFLRCLNRLEEPTDGEIIIDGQNILDKKVNINKIRQKVSMVFQHFNLFANKTVMQNLTLAPIQAKLCSESEAKDRAVELLKKVGLESKADVYPHKLSGGQKQRIAIARSLALKPEVILFDEPTSALDPEMIGEVLSIMKEVANEGLTMVVVTHEMGFARNVASRIFFMDKGVIAVDGCPKTIFEDTTHPRLNEFLNKVLNH
>NZ_CP018791.1|WP_086333497.1|516521_517247_-|basic-amino-acid-ABC-transporter-substrate-binding-protein
MKLLFKLLISITMLIVAANAQTIKVGTNATYPPFEFVNEQNQITGFDMDLMAEIAKKVGFKFEIVNISFDSLIPALKAGKIDIIAAAMSATPERLKAVDFSKPYYHTMNLFIKRADNKELTKFEQLEGKKISAQLGTVQEMAAREIKNAQVMAIDEIFGAVMAVKNAKADALIVDSSIGYGYLKQNPDLVEFLHLPDGSEGFSFAFNKGKHTELQAKINTAIDELKKDGTYDKLLTKYDLK
>NZ_CP018791.1|WP_086246717.1|515786_516512_-|transporter-substrate-binding-domain-containing-protein
MKNIFKFILAIALTAASLNAKTIIVGSDAEYPPFEYIDENGKIAGFDIDLIGEISKIAGFEYKFIKVGFDALIPALKAGKIDAIAAAMSATPERKKSVDFSDPYFFTKNLYLKLATNNSITNKEQLSKLKIGVMLGTVQEGVAHAIKGAKVIPTEGIAGSIMNLKAGKVDVVIVDSSVGFGYLKKNSDIISFLEEADGSDGFAFAFDKGKDSEFLAKFNAALKEVKENGTYDKLLIKYDLK
>NZ_CP018791.1|WP_086333496.1|515181_515790_-|thiamine-phosphate-synthase
MNQIYALTDQHFTPLNRLKAQINELLTGGVKIIQYRNKSQIHDIALLKDISQICKNSGAKFIINDDVQLAKIVDASGVHIGKDDDSLQKARDILGYNAYIGVSCYNDLERAKDAVKNGADYVAFGALFTSPTKPNASICSLDIIKEAKNNLTSKIAVIGGINSSNLNIVKELKIDYIAIVSALYTPGSITQNLAKLNTILKG
>NZ_CP018791.1|WP_086333495.1|514394_515180_-|undecaprenyl-diphosphate-phosphatase
MDIISAIILGVVEGLTEFLPVSSTGHMILTSHFLGLEQTQTLKCFEVVIQLGSILAIVWAFKERLVSDFSLWIKLVIGFIPTAIIGFLAYKHIKELFDPNTVAYMLIIGGIIFIIVELFQKRPSYTPTTNHLHNLSYKQAFIIGLSQCLAMIPGTSRSGATIITGLLCGLNREVAARFSFLLAIPTMLAAATYDSYKNRDIFITNLDQIWIFLLGSVVAFIVALAIIKLFLHFVAKFSYISFGVYRIILGIVFLVFAPNVI
>NZ_CP018791.1|WP_086248514.1|513734_514382_+|uroporphyrinogen-III-synthase
MIYLVSNTPYDDKDIVWLNLCKIKFFKFDVNLNKFDAIIVTSKNSINALKFNSIALTDILVFAIGRATALACKEFGFTQIYEAKNSHGDEFGAEILEKLYGKKVLFIKAKETVSNLDIYFSQNGIDITVVDGYENLILNPKDIKKPEPNSTIIFTSPMNTRAFIQNFGWDKSYQAVAIGKATAAALSSYCDNIIVSNTQNLKSCIELAKNISLSS
>NZ_CP018791.1|WP_086334221.1|524819_525635_+|flagellar-hook-basal-body-protein
MQNGYYQATGAMVTQFNRLDIITNNLANVNTSGYKKDDVVIADFERIFKETKDTLPLENHTKDAAKFLNRTLNRVPHINEVYTDFGVGGLKHTNNPLDVAIGKNDIFLVVDTPVGVRLTKNGSLNLDNEGYLVTKEGYRVLPANYEAQPPLTRGIVIPQDAPMTIDSNGNIYSNQVPVGRLYVAQPRELRELQKEGDNLYKIDNMDDVIDNATSGSISQGYAQISNVNPVKEMVSLIETQRMVDMYQKVMTTHMSDLNQDAINKLASMRAN
>NZ_CP018791.1|WP_086248498.1|525646_526435_+|flagellar-basal-body-rod-protein-FlgG
MIRSLYTAATGMIAQQTQIDTTSHNISNVNTIGYKKNRAEFADLMYQTMQYAGTPTSATTMSPTGMEVGLGVRPTAITKMFNQGYFKETGNNLDMTIAGNGFFQIQLPDGTTAYTRNGSFKLDGDGNIVNSDGYRLLPEMTIPADAIEISVGIDGTISVLQPGNEEMTQIGQIELASFINPAGLHAMGDNNFLETAASGAPNIGNGGEDGFGQIKQGFVEMSNVQLVEEMTDLITGQRAYEANSKAITTSDEMLQTVNQLKR
>NZ_CP018791.1|WP_086333500.1|526479_526827_-|hypothetical-protein
MQNIKRAYSDNSKYFYTWAKSLRYFITQSSSYKNVKVYGFDDLDYADDIANYKDLAHYNKDLNSFQLDAIKNQTNILTPQNINKYLKTMEQKIKSYDIKPFIKALENVEIEQIKQ
>NZ_CP018791.1|WP_086333501.1|527036_527642_-|hypothetical-protein
MSDKNAKKFIFISLLYPLPFAVIILGLIYIYDPLQIFHKPYFREATFFTDMRKQALGIIKHYKFDSYIIGTSMLENTDSKEATNKLNSDDKWINISLSGSSFNERAVVLDYIFQNQNPKHIIYSLDGSHIVNRLNIKTLDWDFLYDNNLYNDIKLYINSKFMICALQFSDNERCIGNIDDIYQITNWYKKIKKDLVDLIIG
>NZ_CP018791.1|WP_192940526.1|529348_529933_-|RloB-domain-containing-protein
MKITVLLEGQTEKFYLEKFKNTYLSDEFVFEFINLKTGNYSEFSKKLEEYKGMENIVFVVVDLDKAENNQTEKENLKKMCKNITYINNKCNIFLTCKNFETFLSAHFENCNDICKLLKIDKKDIKNNENIYDTIIRNGGKYENTLKNLSKENLCYHKIDSKNPTLDIDKIQFKQSGLILLQEYCQYLKSNWNKI
>NZ_CP018791.1|WP_086276268.1|529947_531075_-|ATP-binding-protein
MIASFKVSGFTSIKDEICIDFRAAQNQKLKNTRYENNYFSNRIAKSLVLFGKNATGKTNILKALENVLKIIKKGLDLNYHNKLINKESEFISYILEIVSKKNEIYKYELKFNKDKILFESLSKNSKEIFTFQEDKLKFDSRQEFEKLLSTKSTDTILNKLKDSKTAIIDNFKTLIDLYSYNANINYYDYYDSYDYTQDESIFFQKWWVDFYNKNKDAVLNILSKIDESISDFNFIDLKDNRFALVILRNDTEFAFDKESSGVKKIIQLIFQFVYIYNGGTKSAININDELDSSISTISLIKLLNSIINSSNNQHSQFIFSSHNPLIFDIDILNPAQICIVSKNKELSTTISSLNDFDLRGDKRKAYLNYLRGDYE
>NZ_CP018791.1|WP_086334222.1|531300_532272_+|agmatine-deiminase-family-protein
MRAFGEWEDQELLMLSIPHINSDWAEYLDEILDSYEELVKAVNKYQKVLLIAPNLSDFDRFKKFDNCEFLQIDTDDTWIRDYGAIDVRRGDEIISYDFKFNAWGGKFNSNKDNMVNKKLFEHFGTKLEEIDLILEGGSIDFNGDGVMLTTTECLLNDNRNRLSKDDLEIKLKDLFGLNKIVWLNHGFIKGDDTDSHVDTLARFIDKNTVAYAACYDKSDEHYEELNLMKQELEAAGFNLVALPLPKPVIYEGKRLGATYCNFIFINNAVIVPTYADKVADEYAINALKSALPSKDIIGVDSRVFIRQNGSLHCSSQNRYKRNI
>NZ_CP018791.1|WP_086333503.1|532271_533138_+|carbon-nitrogen-hydrolase
MKVALIAHKYYGDKDSTIKRTTQMIKEAASSGAQLVVLQELHQGAYFCQDENVDKFDLAANYQEDKKYWSSVAKECNIVLVTSLFEKRTEGLYHNTAVVFDTDGREAGIYRKMHIPDDPNFYEKFYFTPGDLGFKPIDTSLGRIGVLVCWDQWYPEAARLMALNGAKILIYPTAIGWFDSDDEATKSAQLEAWVAVQRGHSVANSLPVIAVNRVGFESDESGGGIRFWGNSFVFDAQGVELFRSNSTDEIVQIVDIDMQKCEQVRRWWPFLRDRRIEAYSDITKRFID
>NZ_CP018791.1|WP_192940509.1|533127_533724_-|M48-family-metallopeptidase
MIEYKGFKIEYSKKRVKYLRLKITKTGDIKLVAPLNASKFQIESFISSHTKWIEKTLSKIPKIDLNSIKFLGKSYQIQISPDFKIIDNQIFTPDIQTFTNYANSILKELINQYINIYNPKINRPINAIRIKKMNTRWGSCNSKKGYLNFSTNLIQKDIKFIEYVVLHELAHLIYPHHQKEFYDFIFSLMPDFKSRLNL
>NZ_CP018791.1|WP_086246708.1|533910_535206_+|MFS-transporter
MARSFSRSDIRILGLSSLGGMLEFYDFIIFVFFASYISLLFFPADLDPFWAIFNTYGTFAAGYLARPLGGIIMAHFGDKNGRKNMFMLSILLMVIPTFLLGIMPTFESIGYLAPIILVIIRILQGIAIGGELPGAWVFVSEHAPRGKLYTSVSVLTAAVVAGILLGSFVTMIVKDIWSDNEIRDGMWRLPFILGGVFGIISIYLRRYLSETPVFKEMQERNELDKIPLKSVFKFHKIDSIASMLITWVLTGCIVVLILLMPNFMPKAFNADGVELGRLTTIYMQMGAIVLLCFGCFIYGRLSDKYGIAKTTLVLALLFSISVYAYFDALYSGASFEMVLGLYLLSGLLACVGPCGAPFLMIAIFPNKLRFSGISFAYNIAYAIAGGVTTPFATAMVFKFDPMYLAYYMVVLGFIAAGCSIWFMLRRKDLNI

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Crispr_ID: NZ_CP018791_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018791_2

645034-645225

Orphan

Consensus_repeat	Method
TTAAATAGATGGAATGTATCAAATGTAACTGATATGAGTAATATGTTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP018791_2

>merge|NZ_CP018791|2|645034-645225|PILER-CR
AGCTGGGATGTAAGCAATGTAACTGATATGAGTAATATGTTTTGGAGTGCTGAAAACTTCAATCAACCTTTAAATAGTTGGAATGTATCAAATGTTAAAAATATGAGAGGGATGTTTTATGGAGCTATAAATTTCAATCAGTCATTAGATAAATGGAATGTATCAAATGTAACTGATATGGGTAATATGTTT

>NZ_CP018791|2|2|645034-645225|PILER-CR
AGCTGGGATGTAAGCAATGTAACTGATATGAGTAATATGTTTTGGAGT	GCTGAAAACTTCAATCAACCTTTAAAT
AGTTGGAATGTATCAAATGTTAAAAATATGAGAGGGATGTTTTATGGA	GCTATAAATTTCAATCAGTCATTAGATAAATGGAATGTATCAAATGTAA
CTGATATGGGTAATATGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018791.1\|WP_086333566.1\|634192_635182_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP018791.1\|WP_086333579.1\|650114_651683_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|226362
NZ_CP018791.1\|WP_086248219.1\|636745_637942_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP018791.1\|WP_086248221.1\|638720_639284_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319751
NZ_CP018791.1\|WP_086333577.1\|649177_649696_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086333570.1\|642618_643596_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184363
NZ_CP018791.1\|WP_086333568.1\|639467_640646_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP018791.1\|WP_086246614.1\|635479_636526_-\|dehypoxanthine-futalosine-cyclase	unknown	unknown	gnl\|CDD\|181427
NZ_CP018791.1\|WP_086333572.1\|644100_644841_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369359
NZ_CP018791.1\|WP_086333575.1\|648029_648296_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_192940512.1\|652901_655346_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273346
NZ_CP018791.1\|WP_086333580.1\|652329_652641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086333567.1\|637926_638724_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP018791.1\|WP_086333576.1\|648599_648914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_152023671.1\|648871_649009_+\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP018791.1\|WP_086333578.1\|649857_650091_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086333571.1\|643620_644046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086333574.1\|646015_647230_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|379044
NZ_CP018791.1\|WP_086333569.1\|641500_642622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086333581.1\|652647_652890_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018791.1\|WP_086333566.1\|634192_635182_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	9.97209e-118
NZ_CP018791.1\|WP_086248219.1\|636745_637942_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.44223e-31
NZ_CP018791.1\|WP_086248221.1\|638720_639284_-\|chemotaxis-protein-CheB	gnl\|CDD\|319751	cd16432, CheB_Rec, Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain with a REC domain at the N-terminus. CheB is a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. The N-terminal regulatory (REC) domain blocks the active site of the C-terminal domain until it is phosphorylated. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	3.22165e-50
NZ_CP018791.1\|WP_086333570.1\|642618_643596_+\|hypothetical-protein	gnl\|CDD\|184363	PRK13879, PRK13879, P-type conjugative transfer protein TrbJ.	0.00343379
NZ_CP018791.1\|WP_086333568.1\|639467_640646_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.14424e-32
NZ_CP018791.1\|WP_086246614.1\|635479_636526_-\|dehypoxanthine-futalosine-cyclase	gnl\|CDD\|181427	PRK08445, PRK08445, dehypoxanthine futalosine cyclase.	0
NZ_CP018791.1\|WP_086333572.1\|644100_644841_+\|hypothetical-protein	gnl\|CDD\|369359	pfam07424, TrbM, TrbM. This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation.	5.86135e-31
NZ_CP018791.1\|WP_192940512.1\|652901_655346_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	1.6366e-131
NZ_CP018791.1\|WP_086333567.1\|637926_638724_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	7.44856e-59
NZ_CP018791.1\|WP_152023671.1\|648871_649009_+\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	0.000104625
NZ_CP018791.1\|WP_086333574.1\|646015_647230_+\|toprim-domain-containing-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	5.43518e-09
NZ_CP018791.1\|WP_086333579.1\|650114_651683_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|226362	COG3843, VirD2, Type IV secretory pathway, VirD2 components (relaxase) [Intracellular trafficking and secretion].	2.29246e-11

>NZ_CP018791.1|WP_086333572.1|644100_644841_+|hypothetical-protein
MKLQKTANLMLLTGALFGSIALANTNENGELTGDRRTACEVLLCLSSGQRPSECNPPLARFFAIKAKKPWKTLQMRRDFLELCPTNNGDTATSVIMADYKGMLASVNPDECKPEYLNNQFQNINRDTHIKYYKNNSLTSDSIKNRYTRINPNMPSHCPTFINHEYTDYRMPKYGCDGKYYTVAGFRRGYELVTITKEEYAKLNPNDRHYETRSYSYECGGDSSRTCYVKEEYYYQKIKIPKTCWSY
>NZ_CP018791.1|WP_086333571.1|643620_644046_+|hypothetical-protein
MNKKSKDLKKIIFVETFTKSANNEIKYLDKICSFEYNDTDTIRELFRFVLNYTKETEGSVFAPIDYIDPKDKEKLFVAYFIYYPYSQKGIKVFWKFKDSYSPKNVISNNFDSVKESVFQDSAGMVVYFEYNEARNFDIRLD
>NZ_CP018791.1|WP_086333570.1|642618_643596_+|hypothetical-protein
MKKRLISIITAISLSTTQLSAGIPTIDAAAIAQAVLSYVQEGKDYLQQVQHFEQMVKDTANFEKHMDELGIGMDINDILKDTLGMIRDLENIYREIENIPKDFLRTVNRIENACSFLERESQFFGIDINKGRNSGKFDTLRSCIAVIEDETAIMKTIEELIEKQNRAKDSDEYYKLAIEIDNIKSAKRYLEDKHNTTRINRLIELDNLYQTNTSGISVKKQMRDELFMLNQALQNPNNQKQAQALTNSILIKILETNQRLYELTMASSTAIVSINQDGGSEQKKVSEEDYQKVYKKYDFDANLAYGSNVTPAIKDEHGLPIFKIQ
>NZ_CP018791.1|WP_086333569.1|641500_642622_+|hypothetical-protein
MTINDFELEFGVNDFEFEIDTSTQTQVNEQVNEFQVKTKQEEMEEELKKNIDNLPKYATEALNALDEKEKIDKAMDEKIEILSEIRTPHEKRNFIEERINEAKSDENIKEALNALDEKEKIDKAMDALQKRHEQEKENLKKEFENKDGKDKQTQDSDNSKEKEKTEENSNAKNNNQGQQSTPKDEDYERALKEIEDRHAKELEDLQKRQDKNIDDFTKAINNLANATSIAKLLESLKEMDKALALIITNNKELVSLTDEQRLEKLELALKQNNSKEAVEELIKDLHKNIKTAQKGLDELELEKQNYVKLDRLNQKANKDPREVENLKKFMEKLDKETPNFKEHYPKTYEKSQKIIEKHKNQEHTKEKSQGMQR
>NZ_CP018791.1|WP_086333568.1|639467_640646_-|site-specific-integrase
MKGLKRSRNIYVRGKYLWIDYQEDCVRIRKSTGIKNSTLGFKFVKDNYERFLNDKERKKAKIDYYKLEDEHVTKSIEKKERDYELKLQSKKTSLDSIIDKDNNEYSFTYAMKFFLKEKQFLKKSSLEVYNALIKLIYEFLKSKNIYYIYDFKREDSIDFMSYLLEKNLSKSYIKISSMIFNRLFNIAIENCVIDKNPFFTPKVKEEKEKRPLNPFSLDEVKLLLENSDGILKNYLTVSFFTGARTGEILALTWRDIDFHKKEISITKSLSSKNRLDTPKTKSSYRVIDMLEIVEKELLSMKQTNLDDFIFKISRNRLKKMLDLLLDNLNIQQRTLYETRHTFASVMLSKGEEPLWVGCKMLGHKDLNETYKSYAKYLPKSVTNRAVFLKDLF
>NZ_CP018791.1|WP_086248221.1|638720_639284_-|chemotaxis-protein-CheB
MKQKLILIGASTGGPGHLKKLLTGISLPINVSIIIAQHMSKNFVGSFASRLSQELNSDVELLNNKVTLKNKIYICAQNSIILNSQILTANIDQSGAITTYNPNVNMLFNSAVPICKIADVMGILLTGIGDDGASGLNELYKAGAKCIAENEQSAIVYGMPRRAKDINPNLEIANLDMIRTNLQRFIV
>NZ_CP018791.1|WP_086333567.1|637926_638724_-|protein-glutamate-O-methyltransferase-CheR
MSEFECSSSDLLEFIELAKKLSGNNLISKKEIVKNKIAHFARNKNIDNMQTLCNKFNFDRALRQELLNLITINETYFMRELNQLNSAIQYANTLSIGGSNVKILCAPCSSGEEVYSLGILAKSIGMDRYRLKITGIDINSNMIQKCKDGIYNERSVKNLKASQKELYFKKIEPDYQIRQELMPMIEFKTINIFDDSLFALGQFDIILSRNMMIYFDESYRVLTIERFAKILKPYGRIYFGSADLVPYCDLYSKIVDLSGTYYEKV
>NZ_CP018791.1|WP_086248219.1|636745_637942_+|MFS-transporter
MKKYYALFCYKPNLRVLSSIQFICYFGMWFSHTGIFTLLIDMSAPVWAITLAAAMAFIPNVILAPINGVIVDKFNPKKLMMLMLFIEVITVFMLVFIDDISLFWLLFVIIFVRMGVGVVYFQTEMSLLPSLMNKKNLKLANEIHSIIWAVSYTAGMGLAGIFIYYFGVKASFLFDFGLYIIGMILLTKLKAPEVIKVTSQHIFKMMKEGLIYIKANKTLMHIIFLHAFVGVTAYDNLIALMAKYEYKEIMSISLIIGFMNMTRAISLVIGPMILSKFINNKTLIWLFIGEFLGIGLWALLQFDYYLGLIGLLAAGFCTSTLWSYTFTMLQNNCDKSFYGRAIAYKDMVYYLVSATISFMIGILYESGISLAMITFLMALIFLFGAFYYAYVYRRYTFS
>NZ_CP018791.1|WP_086246614.1|635479_636526_-|dehypoxanthine-futalosine-cyclase
MSRLSVDEALNLIKNGDLRELGEMASAKKLELHPNKITTFIVDRNINYTNTCWVDCKFCAFYKHVNEDEAYLLSFDEIDKKIDELIDIGGTQILFQGGVHPKLKIQWYEELVSHIATKYPNIDIHGFSAVEIDYIAKVSKISIKEVLSRLQKAGLYSIPGAGAEILSDRVRDIISPKKCSSATWLEVHKEAHKIGMKSTATMMFGTVESDEEIVEHLDKIRTLQDETGGFRAFILWSFQSANTKLILQYPQIKKQSPNRYLRLLAVSRLFLDNFKNIQSSWVTQGSYIGQLALKFGANDLGSTMMEENVVKAAGASYRMSQSQMIELIKDIGEFPAKRNTNYDILERF
>NZ_CP018791.1|WP_086333566.1|634192_635182_+|isopenicillin-N-synthase-family-oxygenase
MNIPVLDLSELDSNQEKFIADLKGAFTTFGTCYLINHGIDLDLCKELQRLSKEFFALSLEQKEQISMLKSPQFRGYSKEGGEYTAGGMDYREQIDAGSDKEALNWDENSPIWMRIQGPNLFPKEIPELKTVFNEWFEQTSAATLKLLKSFAIALELPQDSFDKLYGKNSYAHAKLLRYPPAFDGNTQGVGSHKDGGLITFVLQDKESGLQGLLNGEWIDVPPMEGSVVVNIGEFLELATNGYLKATIHRVNLTPNERFSIAYFLGVQLDKDIPILELPEHLKKESTGVDTDPKNPLLRNVAENYFKRMIRSHPDVAKKYHSDLIERFSF
>NZ_CP018791.1|WP_086333574.1|646015_647230_+|toprim-domain-containing-protein
MDKNVKQDIKKLPLDRILINNGYYYDKEKTSQNYKVVKNDNGDKVIISKAQSGDYLYFNPNDDSDKGNIYNFCKNRGVQHQDLLNSSKNIEINQEDKDHISVSKNKSIDEFKEFQAINKDNLLAIRRNIDDELQKYANVKKDNKNNMLIPSFSLSNNMITQVGYTSYLTNPITKDKNGNDYAKPIKQLCYGSKGLEILKSPNLSKIDNIKTVIITESIIDSISYAKINKLDPNTTLLCGTNGQVTKAHKEVLEWINNKIKEPLYILGFDSDDKGVQYDRQIKQIIPQAQIKKSVFKDFNDDLVMANKLKLDYPYSNKEVLQRIQELDKKAVNLNKNIERMSKTDRDKHIEDMKNSDVMLYKEIKSKALYNKQISYALERLEKNYIDINEKMAKLENKKEISRSR
>NZ_CP018791.1|WP_086333575.1|648029_648296_+|hypothetical-protein
MNKKQLKIIAKEYANIVIKDFLYHEINSVIDNIKEHEFDFKTAYELRSIITTIALKNIISDRIALNNIQATISFDDKAFKPIVSYKID
>NZ_CP018791.1|WP_086333576.1|648599_648914_+|hypothetical-protein
MEIGKVCVASWGSYNACNESEATLGVWIDFNDFEELSEIEEHLKNKHGFDIDGIDEELFIIDDDNGLYPYDADLASAWERYEILKDIDADILKALAEKTKFQII
>NZ_CP018791.1|WP_152023671.1|648871_649009_+|antirestriction-protein-ArdA
MKSSCRKNQIPNNLIYYIDLDAFARDLSYDYDYIESSDGLLIKCA
>NZ_CP018791.1|WP_086333577.1|649177_649696_+|hypothetical-protein
MIYTYEQKQEIKELEEKKKEAKQKLIETNEDNYLNIMNECHYKIIEIKDKASKDYGYKIRKDLEKSEADLSTPQQLLILLQAKTTIINSTTTQEDENSADLIFGRDTYVDRNFQEEILSKAQTLYNARRYYKLSKKTLTALIHGYTGQQEYEKALKKLKNLAYEGQSLFKVA
>NZ_CP018791.1|WP_086333578.1|649857_650091_+|hypothetical-protein
MKKSLAIVVLVAGVFFSGCTASLTQAYSDTVNSINETAREVNAKNEEKRNKNNKSTNTNNKYEALSEDGDTGFGTVY
>NZ_CP018791.1|WP_086333579.1|650114_651683_-|relaxase/mobilization-nuclease-domain-containing-protein
MSKFNYEDWLEEYNQIKGGGRVDLGITHKKIFFNSFSAKSIKKNFTSSKQSVVKTISNLTKQGTSNCIKYILKNSEDGYAINQYGEKVNFNDIMQDWSKDFSNNANSKESLHLVFSIKEDCNSRYATKALKKAVKDTMENNFYEYKYAMVLHTHQNNPHIHVVINKNNILTKKKMHFKNKSDIKEFFNKVREDFTYSLNIHGLRDYTNKSSLEKDLKAEYNKVKDSLNMDINCKDKITNIYRSTQKNLEMKKIDTDIKINKLKNSYDELKKKRIDLIDLINLYQKKKNKKRFKLYKELKEINKELKIIESHLKQEIKKYEDLNRKIQTNKDNSLEHYKDSSRDLILQENFCYNFKNLHSKGLTSKSDYEAYIKVKNSIEVTKKLVDENAKISIDNSLVYAKVFGNDKNNIFNLSKKLDSLDKAIHILKQSDMNFEEYFSYLKQLEKNKEFLSDLIDERFEKIEKIVKEKGGNIDRDSFIYKEYKKALNLLNKESIIKENHFSYSKSKVRENEVKNKEIYLGR
>NZ_CP018791.1|WP_086333580.1|652329_652641_+|hypothetical-protein
MKKFSKIFSLLGVASTSLFANNNNISNKLATSINEQITNVGSDLASVVNTASIVMGVIWIIVMLLMAFFNMEQIKQNAKLLFGALVIIGVIYGLSSAMMGGGI
>NZ_CP018791.1|WP_086333581.1|652647_652890_+|hypothetical-protein
MINSTCFTDLTKKTKLKGLSTTSWFAIIILGFISWFFLVLYSIVVIAFLYLLFFLLEYFDEDIYSIISSNMKIPNSKYYA
>NZ_CP018791.1|WP_192940512.1|652901_655346_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MGTSIFTYLKEKIKNKQKEKNQNNCNQNSNALNNINKAVDSIIAIKEPEIYSMTKETNIACKLDDNYILTKDGNIATAVEIGGINYSSSDQNQELSYLQNRVMFFNNMKSDIEMNIIIKKTKIKFIEDKNDNSIAVRNIYANEIMQKWSDIEKDIFAIKYYLIISTVSKNITGALESLRQKATTEKDISSQNIKMNTIKDSVQDIFNKLSTFKPRHMSSDELINFYATYSNAQHTNLKYTHETLSDCYINSDVTFKKDYIEFYKNDGKTSYARYISIKSYETENISSAITSNMLNNKNEYMIYIHLKPYEKEKAIKKIKDTASFSQDIIRNELQVLLELVKADRENLIEVSYSVYLLANSLEELEEKTNDIKAILENQGLNIVRETLNQKALYFSLFPSRGNINARKKTLKTSNLSAIVNFENEIRGFNRNDWGNQAVTYFRHLNGTPYLFNFHWQEFGDRPSGHTMIMGGTGAGKTTLIQFLMCNLYKYNIDIFSMDKLRGMYNFANYTNGEYHDGDESFKLNPFSLKPTQDNLEFLKNWLCLMAQVKKDEHQAINEIAQTIERLYANKREEQVITLSNFIQSLPANNETNLKMKFKNYEKSIFNNEKDALNFEKQLSIVNMDNILNNPDVCALCAIYIFHKLKYQAKNSTDKRGFFCFIDEFKDYLNDEIMREKILEAILEVRKIGGVMCMGFQSLSLFKSTQKGSSFLDNIANYIIFPTNSQSELQEMKEVIGLTDNEISFLSNAGTNSRQVLLKMKLSNQSAILNIDLSRLGNHLKVFSSSSDNVALVKKLKQEYPNEWRQHYLNYKGQI

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Crispr_ID: NZ_CP018791_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018791_3

1405663-1405925

Orphan

Consensus_repeat	Method
AATATAAATTTCAATCCCCTAAATCGGGTCATATTGTTTATAATATAAATTAA	PILER-CR
AAATCGGGTCATATTGTTTATAATA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP018791_3

>merge|NZ_CP018791|3|1405663-1405925|PILER-CR,CRISPRCasFinder
AATATGAGTTTGAATCCCCTAAATCGGGTCATATTGTTTATAATATCACGAATACACTGATTATAAAATGCCAAAATACAAATTTCAATCCCCTAAATCGGGTCATATTGTTTATAATACACATTTAACACTGGTCAAGTAACATTTAATAATAAATTTCAATCCCCTAAAATCGGGTCATATTGTTTGTAATATAATTTAATTTTTGATTTGTTTTTGTCTGCTGTTTCAATCCCCTAAATCGGGTCATATTGTTTGTAATT

>NZ_CP018791|3|3|1405663-1405864|PILER-CR
AATATGAGTTTGAATCCCCTAAATCGGGTCATATTGTTTATAATATCACGAATA	CACTGATTATAAAATGCCAAAATACAAA
TTTCAATCCCCTAAATCGGGTCATATTGTTTATAATACACATTTAACACTGGTC	AAGTAACATTTAATAATAAAT
TTCAATCCCCTAAAATCGGGTCATATTGTTTGTAATATAATTTAA

>NZ_CP018791|3|2|1405683-1405925|CRISPRCasFinder
AAATCGGGTCATATTGTTTATAATA	TCACGAATACACTGATTATAAAATGCCAAAATACAAATTTCAATCCCCT
AAATCGGGTCATATTGTTTATAATA	CACATTTAACACTGGTCAAGTAACATTTAATAATAAATTTCAATCCCCTA
AAATCGGGTCATATTGTTTGTAATA	TAATTTAATTTTTGATTTGTTTTTGTCTGCTGTTTCAATCCCCT
AAATCGGGTCATATTGTTTGTAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018791.1\|WP_086334018.1\|1407052_1407991_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NZ_CP018791.1\|WP_086249002.1\|1409807_1410680_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP018791.1\|WP_086334019.1\|1407990_1408983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086247321.1\|1403782_1404460_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP018791.1\|WP_086255605.1\|1400973_1401522_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|185680
NZ_CP018791.1\|WP_086249006.1\|1406456_1407071_-\|recombination-protein-RecO	unknown	unknown	gnl\|CDD\|184387
NZ_CP018791.1\|WP_086334016.1\|1396548_1398147_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NZ_CP018791.1\|WP_086249008.1\|1404462_1405281_+\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP018791.1\|WP_086247314.1\|1398143_1398755_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP018791.1\|WP_086247334.1\|1410847_1411444_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239313
NZ_CP018791.1\|WP_086249012.1\|1400657_1400984_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NZ_CP018791.1\|WP_086334020.1\|1412670_1413831_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NZ_CP018791.1\|WP_086334017.1\|1399016_1400612_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP018791.1\|WP_086254377.1\|1402577_1403786_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP018791.1\|WP_086247331.1\|1408993_1409350_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|380301
NZ_CP018791.1\|WP_086249010.1\|1401580_1402576_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP018791.1\|WP_086334021.1\|1413827_1414541_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP018791.1\|WP_086249003.1\|1409361_1409808_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP018791.1\|WP_086247315.1\|1398804_1399017_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NZ_CP018791.1\|WP_086247335.1\|1411584_1412661_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428

Protein	Function_ID	Function_description	E-value
NZ_CP018791.1\|WP_086334018.1\|1407052_1407991_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	2.00728e-103
NZ_CP018791.1\|WP_086249002.1\|1409807_1410680_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP018791.1\|WP_086247321.1\|1403782_1404460_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.16152e-83
NZ_CP018791.1\|WP_086255605.1\|1400973_1401522_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|185680	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.	1.19766e-49
NZ_CP018791.1\|WP_086249006.1\|1406456_1407071_-\|recombination-protein-RecO	gnl\|CDD\|184387	PRK13908, PRK13908, recombination protein RecO.	3.86077e-110
NZ_CP018791.1\|WP_086334016.1\|1396548_1398147_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000819241
NZ_CP018791.1\|WP_086249008.1\|1404462_1405281_+\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP018791.1\|WP_086247314.1\|1398143_1398755_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.65075e-97
NZ_CP018791.1\|WP_086247334.1\|1410847_1411444_+\|redoxin-domain-containing-protein	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	1.06596e-88
NZ_CP018791.1\|WP_086249012.1\|1400657_1400984_-\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	1.66011e-34
NZ_CP018791.1\|WP_086334020.1\|1412670_1413831_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	3.85103e-156
NZ_CP018791.1\|WP_086334017.1\|1399016_1400612_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	1.02261e-167
NZ_CP018791.1\|WP_086254377.1\|1402577_1403786_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP018791.1\|WP_086247331.1\|1408993_1409350_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|380301	NF033459, DksA_like, RNA polymerase-binding protein DksA.	1.20318e-54
NZ_CP018791.1\|WP_086249010.1\|1401580_1402576_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.6801e-156
NZ_CP018791.1\|WP_086334021.1\|1413827_1414541_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	9.35453e-103
NZ_CP018791.1\|WP_086249003.1\|1409361_1409808_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	3.66286e-49
NZ_CP018791.1\|WP_086247315.1\|1398804_1399017_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	4.07672e-18
NZ_CP018791.1\|WP_086247335.1\|1411584_1412661_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0

>NZ_CP018791.1|WP_086249008.1|1404462_1405281_+|enoyl-ACP-reductase-FabI
MILEGKKGLIVGVANKMSIAYGIAQACKAQGAQLAFTFLNDAIKKRVEPIAAELDSSLIYELDVNNQEHLDTLADKIAKDFGEIDFVVHAVAFAPKEALEGEFINTTKEAFDIAMGTSVYSLISLTRAVLPVLKSGGSILTLSYLGGAKFVPHYNVMGVAKAALESSVRYLAHDLGQKDIRVNAISAGPIKTLAASGIGDFKMILHWNECNAPLKRNVTIEDVGKSGMYLLSDLASGVTGEVHYVDAGYNIMGMGDVLSDAFGNTVLAWDAK
>NZ_CP018791.1|WP_086247321.1|1403782_1404460_+|triose-phosphate-isomerase
MIYAANLKCNHTKKSYADYAKKLSNGLSQNSNSVIVFPPFTALSEDKFNFTQGAQNFYPAQNGSYTGEIGSQMLEEFEITTVMIGHSERRALGEDEPFLKAKFDYAVSKGWDIIYCIGEDDITHMNGSTKEFLSDQLANIDLNYENLVIAYEPIWAIGTGNSAKVEFITEILDFISSKCSAPLLYGGSVNLSNIDQITAIKSCDGVLVGTASWDADKFLEIIKKG
>NZ_CP018791.1|WP_086254377.1|1402577_1403786_+|phosphoglycerate-kinase
MSEIISVKDINFTPGAKVFIRCDFNTPMDEFRNITDDRRIRSAIPTIRYVLDQGCSVILASHLGRPKDGYEEKYSLLPVAKRLGRLMDREIKFAHDVVGHDAKEKVEKLRAGEILMLENLRFEKGETKDDKNLAKALSELADYYVNDAFGVCHRAHSSVHAITQCYDNEHKAAGFLLIKEIEFGQNLIRHPSRPFVAVTGGSKVSGKLQALTNLLPRIDKLIIGGGMAFTFLKALGENIGNSLLEEELVEEAANILKKGRELGVKIYLPVDVVAAQTFSNDSPIKYVPVQEIPNGWMGLDIGPASVKLFKEAIADAQTIWWNGPMGVFEMDKFSKGSIKMSHAIGESFATTVVGGGDTADVVERAGDTDEMTFISTGGGASLELIEGKELPGVRVLLREDSL
>NZ_CP018791.1|WP_086249010.1|1401580_1402576_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MALKIAINGFGRIGRCAARIILNNPAEYELCIINDTAERKMTRYLLKYDTVHGEFNQDVEIVNDDYIAVNGKKIRVYSTRDINDMDLRGIDVVLECTGKFLTKEKCQTYIAKGAKKVIMSAPAKDDTPTFVLGVNTDKYEGQTIISNASCTTNCLGPVTRVLDDLYGIQKGLMTTIHAYTNGQSLVDVKCRDFRRSRAAAVNMIPTSTGAAKAMKLVMPSLDGKLHGQSIRVPVPNVSIVDLTAVLGKSVTKEELNNAFVEASKGSLKGIMAVDFDERVSGDFNTSSYSSIVAADLTQVICGDMIKVMAWYDNEWGYSNRLVEMAKFISEK
>NZ_CP018791.1|WP_086255605.1|1400973_1401522_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MNIAIFGGSFDPPHFGHDEVVKSALKNLNIDKLIIIPTFLNPFKSEFGAPPNLRLQWCRTLWENLSPKIIVSDYETSQNRAVASIDSVSYFKNKFNASRIYLIIGADQLNSLHKWHRYDELKALVSFVVACRDDIKIDENLQKLDINVKISSSKIKSELNFKQVPSAILSSVQSFYKDKNAK
>NZ_CP018791.1|WP_086249012.1|1400657_1400984_-|ribosome-silencing-factor
MQNRIDRIVKLLDEKKAENIEVIDMQGRDYLSKFVVVATTLAARHGFALLDDLKTELKPAGENFLGVESSDDWTVIDLGDIMIHLMSETYRAKYNIEEFLKELSTKAN
>NZ_CP018791.1|WP_086334017.1|1399016_1400612_+|arginine--tRNA-ligase
MSAKDTLKSEISAILGHQVVVEKPKDRALAHYATPLAFSLAKELKKSPVIIASELAAKFNSPKYEVSAVNGYINFKLSGEFLDSLANDALKSAEKFGSKEIKNPKNIFLEYISANPTGPLHIGHVRGAVYGDTLARVARHIGIGVHTEYYINDAGNQIDLLGTSITLRAREIIFNETVEYPEKYYRGEYIDELAHAAYQKFGKDIFEPSRNLELAEFGKDIVLDIIKKDLADAGIFIESWASEKSYYDKLDQTLQRLEKSGEIYKKDGTTYIASTKLGDDNDRVVVRSDGRPTYLAGDIIYHNVKFANDFDTYINIWGADHHGYIARLKAAINFLGYDENKLEVILMQMVSLLKDGKPFKMSKRAGTSVLMSDILAEIGSDALRFIFISKANSSSLEFDIDELKKQDSSNPIFYINYAHARINQIFTKAGKLPEDVANVSLANLSDDGKNLLFEALIMPEILEDALYQRSLHKIPDYLKGLSASFHKFYNENRVVGSQNEDELLKLFSVVALSIKVALNLMGIKAKDIMEN
>NZ_CP018791.1|WP_086247315.1|1398804_1399017_+|twin-arginine-translocase-TatA/TatE-family-subunit
MGSMSISHWLIVLAIIVLLFGAKKIPELAKGMGKGIKSFKKEMEDDTPLEKIEKAQDSTEVKKDETQKSA
>NZ_CP018791.1|WP_086247314.1|1398143_1398755_+|guanylate-kinase
MSGQILIISGPSGSGKSTLLSRLISEFDNIYFSISSTTREPRDGEQNGVNYHFINVDEFQKGIDEGKFLEWANVHKNYYGTSLEPVEKALKDGKIVIFDIDVQGYHLAMKKYSHIITSVFVTTKDRHELKKRLTKRGSDDAQTIENRLFNAATEIAYISEYDYLIINDDLDSSYERLKSIFISLSSKTQSFNLNDVIESWSEC
>NZ_CP018791.1|WP_086334016.1|1396548_1398147_+|hypothetical-protein
MKVILLNNNPAVSKLASVSLNKLGYEFVEIDNLETIVDNEADLIICDSGLYNSEVNYLEYAQNQLFLIPRNQSNQYDIAQNEILQKPFLPTDFIDIIKVILKDTTQDIQPPQKEPIPADNDIKVGNKFGEIQDIDDMDFSSNNDELSDFDDLDSNELLNQIDDMEDQFVENEFNEFDDTELSFTEDVEDLNKGLEEITQIDEIKEEPIKEQLEEISEVSNDFIEEFDDINQIDQTTQSNQIAKTDELAEVSSEFAEVDDEFAKIGSEFEEIDDSITELSDEINPVDNELIVADNKKEEVASFETIGEFQKSDTNKNDKISQEIDEVAKTIDISKDVKEPTSKSQNIKDITSEYENIKLDISAFDELPDEESTLDEKSEPTIKVEEVQDPMQNSDLDYTDNLNELSNMLDEIDNMDYEEESVNQMVENESKIASLNSCYEASSIDEIDEAAIKEALHEDTTPTQTLATDILEQQEPKEEIVATDSSNINKDELAQVLATQIGQELGKALNTGAFKDMLKDINININISFEGKQ
>NZ_CP018791.1|WP_086249006.1|1406456_1407071_-|recombination-protein-RecO
MQGYILKVQKVRDEDCLVTILSPNKQIKCYRFYGARHPIITQGFKLDFELVESKTFLPHLRSTMHLGFSWLIDRDKLLIWQNFMRLLADHLRDVEDSDEFYYNLLENCAKKFHRQNPIRVVLEAYAMILQFEGRLHLDMSCFICDGKLGDEIGVGRAFLIAHPACIGKNALNKDSIIRFLSTSSTAHLSDSQIKELYFILLEGF
>NZ_CP018791.1|WP_086334018.1|1407052_1407991_-|tRNA-dihydrouridine-synthase
MIDFSSKPLFLAPLAGFSDLPLRTLAKRFGCDCTVSEMISSNALVYEHDKTLSMIEKSPLETPYIVQIAGSNKDIIAKAVDILNQFDGIDGIDLNCGCPVPKVIKQNAGSALLNDPKLLCTLIETIKNRSNKRYTSVKIRLGFNIKMAHEIARDLANAGADFICVHGRTRAGGYSAPVDYEAIARVKSATTIPVVANGNIDINNYQEVFKITGCDGLMIGRASIGSPWIFKEIKENQSINPNEKKQIIKEHFELMLKTYGDHAIGIFRKHLHEYSKGISGASEFRCMVNQIHSAEIMREQIDCFFDPCRAIS
>NZ_CP018791.1|WP_086334019.1|1407990_1408983_-|hypothetical-protein
MKTRRFFLYSIIYIGLVWLGIFSFANQNYAVNIFGYNIDFPIATWVILPLIIFVILAIFHMSYYGFKIYLEGRAMRSDAQIYNVLAKEIYLGLESNKDFKTDLFTASSEVTKSLSPWLNLGKPTLQNDDLRAAYELCSDVKSGKVCDLKRFKLLKTNPLYIQNEKNKIMADYKYAITVLSNSDINEELKALASNALVENGSFLELSKFNPIYTVKDVFVLINRYAQDKFEISTNDIFNIISKVKFTQDEYIQIAKILKTKIEPDLLISMFDRLRNEESLAFEAYLYLLYDFQMIEQLREKIMNENSKFERIETLLFLRDHGKIARADLFY
>NZ_CP018791.1|WP_086247331.1|1408993_1409350_-|RNA-polymerase-binding-protein-DksA
MKQSELDYFKELLLERKEQIQRNINDAANEIDGLRQSGATDEFDFASISADEELEHSISAKQQQELNEIDQSLKKIESGIYGICDMCEDDIDIERLKVKPHARYCITCREIAEKTIIK
>NZ_CP018791.1|WP_086249003.1|1409361_1409808_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MQILVHCLQKLSDDKELKEYIKMSSKWASIKEINKFSPQIAKAQIQGQAASHRAYEEAYKPCLNGFCIGLDERGDMLDSFEFAKLLKDKTQISFFIGGAYGLGDNLRGRMDKLVSLSRLTFAHKIAKLVLYEQIFRALCINANHPYHK
>NZ_CP018791.1|WP_086249002.1|1409807_1410680_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MLGDFFSKIRKKQSHPSEAPSHWVKCNSCSSLMYFKEVEACYNVCPKCGYHMRLSAQKRIELISDVGSFVEFDANLRPIDPLNFVDKKSYKKRIEEGQSKNGKTSSVISGEATIDGQPIQLVVFDFSFMGGSLSSVEGEKITRAVRRAIEKRNPLIIVSASGGARMQESTFSLMQMSKTSAALKLLSDNRLPYISVLTDPTMGGVSASFAWLGDLIIAEPKALIGFAGQRVIEQTIKASLPEGFQRAEFLLEHGLIDAIVPRDEHKKYLSDMIRFFMKNDNFYSPINEAI
>NZ_CP018791.1|WP_086247334.1|1410847_1411444_+|redoxin-domain-containing-protein
MIVTNKAPQLSGVAVLGNGQIEENFDLYKNIGPKGAVVFFYPKDFTFVCPSEIIAFDKRYQEFKDRGIEVIGVSTDNEYCHFAWRETDIKQGGIGRVQFPLVADLKKEWARGFDVLFDEAVALRGSFLLDKDGTVRHAVINDLPLGRNIDEMVRMVDTMLFTNEHGEVCPAGWNKGDKGMKPTTEGVASYLSTDGDKL
>NZ_CP018791.1|WP_086247335.1|1411584_1412661_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MSRVLNFSAGPSAIPLAVLERAQAEFTDYHGLGFSIMEVSHRGKVFEELHNNAIAKVREFYNIGDDYAVLFLQGGATLQFAQIPLNIYAGGVAEYANTGVWTQKAIKEAKIQNINYKVVASSEDVKFDHIPKVEFSDNADYGYICSNNTIYGTQYSTLPSPKCPLVVDSSSDLLSREIDFKAHNIGLFYGGAQKNAGPAGITIVIVKKDLAARVKDSVPTPLRYTTQIEANSLANTPPTFGIYMFDLVLDWIKEQGGLSAINAINEQKAAALYELIDNSDFYKAFAKPGSRSLMNVSFATPSAELDGAFVKLAEQNGMIGLKGHRILGGLRASIYNAVTQQSVQTLCEFMKEFQRTHG
>NZ_CP018791.1|WP_086334020.1|1412670_1413831_-|exodeoxyribonuclease-VII-large-subunit
MTVSDLNESAKALLESHFNSVEVEGEISRLTKHSSGHWYFTLKDEKSAISVAIYKFANQNIKFEVKDGMKVTLIGKLSIYSPNGSYQFIASRIIPIGVGELELAFNQLKERLALAGLFNRADKKPLPKYPNKIGIITSASSAAFADMCKVISDRYVLPKFYLFNSLVQGNSAPANLIKMLKLADSMELDVIVIARGGGSKEDLWCFNDEGLAYAIYEAKTPIISAVGHEIDYSISDFVADHRSLTPTAAMVDLLPDSNELYQKLDIFQNTLEAMITTKFNRCENFLNLAKMQIKSKAIEQKINLATLTLDSFKSNLDNFLHKKFNLAQSKIDKFELVFKRQEYFYKVTKNMAHIIKDSQIISLAELKSGDEITISSQDLCKQAIIK
>NZ_CP018791.1|WP_086334021.1|1413827_1414541_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MQNQDKIINMFNEIAPTYDKANKILSFGIDASWRSSACDLVLKNFKSTLNIADVACGTGDMIKAWKSSAKKANLTIEKITGIDPSKEMLKVAKEKLPECEFIEAKADEMSLNSNTQDIVSISYGIRNVVARTQALREFNRVLKVGGYLVVLEFTKRDKNGLIAKIRDFYLHNILPIIGGLISKNKEAYEYLPRSIEGFLDSAEFCRELQDNGFEIVIVKGFSMDISTMFIAKKVKNI

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Crispr_ID: NZ_CP018791_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018791_4

1490399-1490500

Orphan

Consensus_repeat	Method
AGCTTTCAAATATCGGTAAAATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018791_4

>merge|NZ_CP018791|4|1490399-1490500|CRISPRCasFinder
AGCTTTCAAATATCGGTAAAATCGGGCTAGAAATGATGGCAATATATTTTGCCATCAATTGCCATCATTAAATCTTAAAAGCTTTAAATATCGGTAAAATCG

>NZ_CP018791|4|3|1490399-1490500|CRISPRCasFinder
AGCTTTCAAATATCGGTAAAATCG	GGCTAGAAATGATGGCAATATATTTTGCCATCAATTGCCATCATTAAATCTTAA
AAGCTTTAAATATCGGTAAAATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018791.1\|WP_086334075.1\|1491738_1492761_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP018791.1\|WP_086334068.1\|1486749_1487532_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368639
NZ_CP018791.1\|WP_086334064.1\|1482236_1484561_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP018791.1\|WP_152023666.1\|1484564_1485092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_152023667.1\|1485602_1486703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086334077.1\|1493185_1493554_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP018791.1\|WP_086334079.1\|1497254_1497626_-\|glycoprotease	unknown	unknown	gnl\|CDD\|224135
NZ_CP018791.1\|WP_152023673.1\|1488660_1489341_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP018791.1\|WP_086248953.1\|1497697_1498582_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|237294
NZ_CP018791.1\|WP_086244456.1\|1490676_1490895_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235339
NZ_CP018791.1\|WP_086334069.1\|1487569_1488367_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NZ_CP018791.1\|WP_086334247.1\|1496095_1496311_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225350
NZ_CP018791.1\|WP_086255984.1\|1481438_1482176_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_CP018791.1\|WP_086334076.1\|1492763_1493189_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|173102
NZ_CP018791.1\|WP_086334072.1\|1489430_1490015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086334078.1\|1493550_1496109_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP018791.1\|WP_086334070.1\|1488386_1488659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086276471.1\|1496363_1497245_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP018791.1\|WP_086334066.1\|1485310_1485613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018791.1\|WP_086334074.1\|1491223_1491742_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527

Protein	Function_ID	Function_description	E-value
NZ_CP018791.1\|WP_086334075.1\|1491738_1492761_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.7465e-61
NZ_CP018791.1\|WP_086334068.1\|1486749_1487532_+\|hypothetical-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	6.31551e-18
NZ_CP018791.1\|WP_086334064.1\|1482236_1484561_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.04379e-06
NZ_CP018791.1\|WP_086334247.1\|1496095_1496311_-\|hypothetical-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	0.00509
NZ_CP018791.1\|WP_086334077.1\|1493185_1493554_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.03784e-31
NZ_CP018791.1\|WP_086334079.1\|1497254_1497626_-\|glycoprotease	gnl\|CDD\|224135	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones].	2.89047e-08
NZ_CP018791.1\|WP_086334078.1\|1493550_1496109_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP018791.1\|WP_086244456.1\|1490676_1490895_-\|hypothetical-protein	gnl\|CDD\|235339	PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed.	1.6042e-05
NZ_CP018791.1\|WP_086334069.1\|1487569_1488367_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	1.88159e-19
NZ_CP018791.1\|WP_086255984.1\|1481438_1482176_-\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	2.92144e-08
NZ_CP018791.1\|WP_086334076.1\|1492763_1493189_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|173102	PRK14639, PRK14639, ribosome maturation factor RimP.	2.41105e-64
NZ_CP018791.1\|WP_086248953.1\|1497697_1498582_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	gnl\|CDD\|237294	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase.	1.3597e-168
NZ_CP018791.1\|WP_086276471.1\|1496363_1497245_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	5.4383e-110
NZ_CP018791.1\|WP_152023673.1\|1488660_1489341_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	4.72939e-34
NZ_CP018791.1\|WP_086334074.1\|1491223_1491742_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.67864e-47

>NZ_CP018791.1|WP_086334072.1|1489430_1490015_-|hypothetical-protein
MYKNKSEHISIKMPKYVIDKLKILSKERNKPLNKLYIEILLSDLIFNDDRILNLYLKARVEKKSITNVIRYHLGYKEFENFDYKSLLTSNKNCFKTMVSVSAEEKEKIKNRAKHISLPMHTYSFIKIMAFIDLLELFTMGEKYEIRNMAKKRNMTPSQFCNYCLDTPNYREIKDIEYITVIDGIWYPQTYQKIV
>NZ_CP018791.1|WP_152023673.1|1488660_1489341_-|ParA-family-protein
MKMIIAIINEKGGVGKTTLALNLSAKLSLDGDKVLLLDADPQNSTSIFCNRREQNNIEPLFVTMQKTGDSLSSEMKLAKQGFDDIIIDTGGRDSKEMRKSLLNADIVIVPTSISALDTKAIEYVISVINDAKEFNEKLITYILINKATTNIFLHQDIDRLKIELDTLIKNSKDIHLLNSVISDRISYKRSISEGLSICEFKDEKAKDEFDTFYREFESSVKNNLGV
>NZ_CP018791.1|WP_086334070.1|1488386_1488659_-|hypothetical-protein
MGFKNIDNDKANEFINAARGESTTSIQAQTTAPAKKTSKELKSKLKRQKAINLYFNDEENELLRARAKDMGMTVSGYIRFILFQTIHSKI
>NZ_CP018791.1|WP_086334069.1|1487569_1488367_-|Fic-family-protein
MKYIAQYTQIDENDNINLNNIEIAVGLGLVDNLKPSQYFYQVLDESQTYKELDCKIKNYYDGKSLSQGEKAQKECDIVSINIAKYLEKNGFKFSPMTLKLIHKNIFTGAFEQTLEKYIGVFRDVNITKDEDILGGRSVIYADYDEINELLEYDFELERKKDYANMNRESQAMSVAKFISGIWQIHPFREGNTRTIAVFTIKYLQNKGFDINNNVFKEYSKYFRDALVKANYENMREGIKSDFTYLESFFNKFILNKETRLKPFDS
>NZ_CP018791.1|WP_086334068.1|1486749_1487532_+|hypothetical-protein
MIEIYKNKFEVDVFLFQIIALATMLIDHIALAFFDDNFWMRGIGRFAFVIYAFLIAQTFICIKNNESKITKHLKFYILLAILSELGYDLMMRYKLDTWEVIFLNQNVMLTLIIGFLTLYLINELQNKLYSILVIICSFYLVYLTKSDYGISGVMLIVCFYYYLNSYTKISALKRLFFLISIMFSFVIFYHLTIFNSSDLIASFALYEITYYPFYFLAPFLLILYNGKLGYKNLYFKNLYRYFYPAHLFLIGLTLFIYDNI
>NZ_CP018791.1|WP_152023667.1|1485602_1486703_+|hypothetical-protein
MMSEFIPNKKPQSQSSLAFSSDDLDMIDNTIDNELAFQDVSNLESMEADINEFNIKAKSQDLSQNFQNELEQIKIPEQTHHEQEIQIAPEATHQTQTHKLEVAQDFTAQDLSDMSYAFAINKFELDKSATNFKEVEMISSVLKHSIGDEYLSTSQGGTTAFQSLMSLDDAIRQSNERNGTFATHKVSFSIKADGKEYKNFNVFLGDNPSAFGKDFDYLVAMGQPEIIENRSKVNKMFDFIKDKNSDGKYKNILENGSRFVKNTMKDLAEQMQQLSAFSPEAQALIAGFVKSYFIENSNNKINYKPNDKESNLINQVNDMKQQLLSKDEKSQIGDIDIAKLAANIKIDKTNNARQKTRTNQPNSREL
>NZ_CP018791.1|WP_086334066.1|1485310_1485613_+|hypothetical-protein
MAKNDLSKKLAILNKKMEQDKETYRKLKEEEKRYNQMKKPLESFIIDFQNELIGNEYFRLSVEQILSNDEYKNLKIKFDSLKNIIENINDKNTNKENNDV
>NZ_CP018791.1|WP_152023666.1|1484564_1485092_-|hypothetical-protein
MRYKFTISDDNKKFLEQLKIQMNINTTSELLNRIIADYSIAHNKVFPFDLIKLNDKKHQKLYEYRIKLTHDENEFLKSQAQKHGGISITKELRLRIVNNIYDEDFVPRIDILNLLLRTRANISAFRKIKEHIEANEIFVLDEKCEALLDENLKKLTQICEHLSELSNRQFLMVEQ
>NZ_CP018791.1|WP_086334064.1|1482236_1484561_-|relaxase/mobilization-nuclease-domain-containing-protein
MARIYNYFAEKWIDEWESESFKIKKIFQTHDNNYTKSKFYQLKREQYKTYHSSRSHSTLKKYNYQVMFKISSSCSSYEHLHSHIKYITRNGSLEAVYYDPSQKAEYQRADRFQGKDGNKQMLKQMNSSYALKTNSEITHLKIPNKETFNMIFSMSNYEVATTEQIRKAAYETIKELYGNNSFIIASHNDTDNPHCHLILKRRNSINGKKLDIKKSDLIKIRLKYSQKLREAGVENAFTKDKPIAQEAYKEKYNSYDRSPTENLIVDFGKANYKFDEKNQMSYYIKYKTKNDKYVTIWGKDLERVVKENNLQRLCFARFAVVGQKPIQRTISKFDKKSNQYKCYQETKFEKVWGCSLSIDSDGTEHRQELKPLKKLNQNIYQEISQDLTPYKEKSKYTPVNKIYDDEFVIGLSPLDINLDHRNEYVNDIISGKIELSPYKTRYDIYAYKDSDTELVFEREFQKQKESLISNKFKTCINYTPNLLKYKGFEIGLYKPTNQEISKDSYSVLLQYHDKSYLIGSIEKDKFQDLTFKTFLKEIDHCISTGKYQAHLVETSYIGDILSPINSSKKLKLNDYESDKDYINAIKTDKENKITGSIAQAKLYVKEQEQKRKRDEELAKAKAKEQERKELERQKALLQEQIYKSRQIQIKNYITQRNDYEQRTNRIKPATLCRYRNLHISNFGNFADKSNGSIRQLPASRDNSMRIVSKFNMDFRLRKSNMLLSDNSQHNLRHTEQSKNNLYVRQQGDINQADTTTRALTTSKKTKKEIQSFER
>NZ_CP018791.1|WP_086255984.1|1481438_1482176_-|Fic-family-protein
MYDKFSLSKDNNIFLAKRDIIDNIYKSARLEGIAVTFPQTYAICNGANVANLSVDEVVAINNLKRAWQFIFDTMEYPKVDFAFICQVNQIVGSGLYNNAGFLRSIPVSIGGTSWQPNLPIKPDIIDEINEIHNIENATHRAIDLMLYIMRKQMFLDGNKRTATLCANRILIENGAGLINIKVEDIDEFKIKLIKYYETNDKNEIREFLFENSINGIDIKDPSQEELIEQEKNKQIFKKYSSGLEL
>NZ_CP018791.1|WP_086244456.1|1490676_1490895_-|hypothetical-protein
MNKALGFDKRINAKEYNQYALRHTVASRLVSLKKFSAYRLMQYLGHKNIQSSLKYVHLNIDDIRDGIGVGVC
>NZ_CP018791.1|WP_086334074.1|1491223_1491742_-|TIGR00730-family-Rossman-fold-protein
MKYVTIFGSARVDSNNEHYQKAYKIAKALTAAGYGVVTGGGGGIMEAANRGAFEAGGDSIGINVILPNEQQLNPYCTKSLILNNLNERKEALIKDSFAFIILPGGFGTLDEAFEVLTLSQAGLKEHKIIFTQKSFWEPLIGFLDSLGDMGLADKNGYIIIDDIDEILEFLAV
>NZ_CP018791.1|WP_086334075.1|1491738_1492761_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MGDEFYLSLAIDKAWDCQLLTYPNPAVGAVILDENGQILSIANHQMAGLPHAELNATKQALETKNSSLKELFATAKNANELYNLIIKNHQNLLKNSTYYVTLEPCAHQGKTPPCANLILAMGAKRVVIGSRDYGKHARGGAELLAQNGIEVKLDVCKARCDELLEPFLRWQNGNFTFFKIALSQNGVASGGVISNLASRTHTHHLRSLVDLMVIGGATVRIDRPTLDARLFSKKSPDILLYSSYANFDSKIPLFNIPNREVIISNSLDLAFKKRFVMIEGGENFLRNLDSRVDWILIYRSNEFKSANNINLDMKVKILHRSIFGDGELLWCKRVDMGVNS
>NZ_CP018791.1|WP_086334076.1|1492763_1493189_-|ribosome-maturation-factor-RimP
MNLQELEKLLEGCGVALYDTEVSSENGRQIYRVYICKSGGVSLEDCEAVSKLLSPIYDVMPPVSGDWVLEVSSPGLERKLSKPEHFAKSISEMVKIILVDKSEIIGTIKSVNGDDIIINDGEQNINLNFNNIKKAKTFIQW
>NZ_CP018791.1|WP_086334077.1|1493185_1493554_-|30S-ribosome-binding-factor-RbfA
MNPAELKRLRTQSILKELIPEALSTLEDEYLKGLCVTDVECKKGRYDAFVYLDKMSFDEKEQAYILSHLKKISRHIQNHCMAAEGWYRSPNFHFVFDDRLKYQNHMDALFAKVADELQKGKK
>NZ_CP018791.1|WP_086334078.1|1493550_1496109_-|translation-initiation-factor-IF-2
MAKIRIHEIAKELGSSSKKILEKAKELGFAVTTVSSAVSPEDAAKLYDYVQSGIIPESKQAKKSTTKQPAKEEIKSQTKQVDIKEEAKVSKLETKVVAPKQPEIKEEQKIKDESKSETLANSSLTKRRGLVIVKKKKDEQPKVEKSSSPTMINNKALESIFGSSDDSFKKKKKDKKQFQATKKESSSKIDLMGLSEFGDDIVIDDEDVVVLPDLTVKPIETERTQTNKKPLNVYKPAQNNGFNFEGGIQRSSRKKHKKVVKDSQNESVVSVDIPKEIRLYEFADKIKKSSSEIISKLFMLGKMTTKNDFLEEDEIEILGAEFDIEINIVDTQEEFDYVKAYEDEDDLHAESRAPVVTIMGHVDHGKTSLLDYIQNSRVASGEAGGITQHVGAYMVEKNGKNITFIDTPGHEAFTAMRARGASVTDIVIIVVAADDGVKPQTKEAIAHAKAAGVPIIIAINKMDKESANPDLVKTGLAELEIMPTEWGGSHEFVPVSAKTGMGIEDLLEIVLLQAEILELKANPNREAKATIIESSLQKGRGPVATVIVENGTLKVGDTIVAGVAYGKVRALSDDKGRSLKSIKPGECGVLIGLSEVPEAGETLISVKSDKEAREYAQKKYEYLRQKELSKSTKVTIDELSAKIAEGELKNLPVIVKADVQGSLEAIKASLEKLRNDEIKVNIIHSGVGGITQSDISLASASQNCVILGFNIRPTGEIKEKAKDKAVEIKTYNVIYNLLDDVKALLSGLMSPVITEEDLGQAVIRQVINVPKIGQIAGCMVTEGIISRGAKIRVIRDGVVVFEGNISSLKRFKDDAKEVAKGYECGVGIEGYNDMREGDYIESYKEVENRAEI
>NZ_CP018791.1|WP_086334247.1|1496095_1496311_-|hypothetical-protein
MCVVCKGRFYQDELYKFRSLNGEIVQNLGDARSFYICVICIKKDAKELRKPLTKFGKNSINLKEIIVNGKD
>NZ_CP018791.1|WP_086276471.1|1496363_1497245_-|homoserine-kinase
MRIFTPATSANLGPGFDSLGLALKLYNEVSITEQKISSINIIGEGSDKIALKKNNTFVNIFNETIASLNGKSLNYKFNFVNNIPFSRGLGSSSSVIVGAIAAAYHMAGFKVERSIILDKALQYEHHPDNISPAVWGGFTVNIVNNASVYTQKADIDSNLKAVVVIPDEPMNTKQSRNKLPSHYTMNECVSNLSHAAYLSSCFIKKDYDNLRLACIDKMHEERRMSALPELFKVRDVAYANGALMSTLSGSGSTFLNLAYQDRANALAEILQAEFPKFKVKILEIDNDGFSIKS
>NZ_CP018791.1|WP_086334079.1|1497254_1497626_-|glycoprotease
MEQIQSDEKASEILTIAIANLDSKYKINKIIYANGPGSFMGLKVAYLTLCTFCIARGLELYGVDGFSLNGFRPIRANKNMSFVLENSKISLQKIEPCEFELPKKLDGLNLMADALPNYVIDAV
>NZ_CP018791.1|WP_086248953.1|1497697_1498582_-|UDP-3-O-acyl-N-acetylglucosamine-deacetylase
MKQRTIGKRVEGVGIGLHKGEPIKLILEPLEANSGVVFYRSDKATSFKAEPSSVLNTQMATVIGNDKATVSTIEHLMSAINSYGIDNIRVILDANEVPVMDGSAISFCMMLDEAGVVELEADKKVIVVKREVEVRDGDKYVKLTPSSNPKFNYTIKFENPVIGLQSYTFEFSKENFINQIARARTFGFLKDVQKLNSMGLALGGSLDNAVVIDGAKILNPEGLRFDDEFVRHKILDAIGDISLLGAPMIGDYEAFAGSHDLNHKLTLALLSDEKNYEIVTLSEATQKEYEKAFA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	NZ_CP018791.1	381693-381721	0	1.0
NZ_CP018791_3	3.1\|1405717\|28\|NZ_CP018791\|PILER-CR	1405717-1405744	28	NZ_CP018791.1	1466007-1466034	0	1.0
NZ_CP018791_2	2.1\|645082\|27\|NZ_CP018791\|PILER-CR	645082-645108	27	NZ_CP018791.1	645376-645402	1	0.963

1. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to position: 381693-381721, mismatch: 0, identity: 1.0

cttttttatactcattaatccaatctata	CRISPR spacer
cttttttatactcattaatccaatctata	Protospacer
*****************************

2. spacer 3.1|1405717|28|NZ_CP018791|PILER-CR matches to position: 1466007-1466034, mismatch: 0, identity: 1.0

cacgaatacactgattataaaatgccaa	CRISPR spacer
cacgaatacactgattataaaatgccaa	Protospacer
****************************

3. spacer 2.1|645082|27|NZ_CP018791|PILER-CR matches to position: 645376-645402, mismatch: 1, identity: 0.963

tggagtgctgaaaacttcaatcaacct	CRISPR spacer
tggaatgctgaaaacttcaatcaacct	Protospacer
****.**********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	46297-46325	4	0.862
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	46374-46402	5	0.828
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	46374-46402	5	0.828
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	46374-46402	5	0.828
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	NC_019726	Staphylococcus phage JD007, complete genome	118528-118557	5	0.833
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	LR215719	Staphylococcus phage Stab21 genome assembly, chromosome: I	114045-114074	5	0.833
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	AB853331	Staphylococcus phage S25-4 DNA, complete genome	115905-115934	5	0.833
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	NC_022920	Staphylococcus phage S25-3 DNA, complete genome	111038-111067	5	0.833
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	NC_023573	Staphylococcus phage phiSA012 DNA, complete genome	107192-107221	5	0.833
NZ_CP018791_1	1.5\|523906\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523906-523935	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	294648-294677	6	0.8
NZ_CP018791_1	1.15\|524564\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524564-524593	30	MT774409	CrAssphage cr131_1, complete genome	53842-53871	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	94482-94511	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_HG813245	Staphylococcus epidermidis PM221 plasmid 2, complete sequence	11939-11968	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MH542234	Staphylococcus phage Terranova, complete genome	7470-7499	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	114428-114457	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MH321490	Staphylococcus phage Quidividi, complete genome	7444-7473	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_015712	Clostridium perfringens plasmid pCPPB-1, complete sequence	12467-12496	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KX879627	Campylobacter phage vB_CjeM_Los1, complete genome	93077-93106	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MH107028	Campylobacter phage CP39, partial genome	28313-28342	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KF148616	Campylobacter phage CP8, complete genome	95482-95511	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_016562	Campylobacter phage CPX, complete genome	95246-95275	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	JX569801	Campylobacter phage CP30A, complete genome	9137-9166	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KX229736	Campylobacter phage PC5, complete genome	9002-9031	6	0.8
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_042112	Campylobacter phage CP81, complete genome	33409-33438	6	0.8
NZ_CP018791_3	3.1\|1405717\|28\|NZ_CP018791\|PILER-CR	1405717-1405744	28	MN694142	Marine virus AFVG_250M416, complete genome	11187-11214	6	0.786
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	73879-73908	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP009638	Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence	46428-46457	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	141829-141858	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP040341	Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence	108546-108575	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NC_018492	Bacillus cereus FRI-35 plasmid p01, complete sequence	60524-60553	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	183414-183443	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP053290	Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence	324119-324148	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP016317	Bacillus cereus strain M3 plasmid pBCM301, complete sequence	191721-191750	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	679-708	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP042928	Bacillus cereus strain G1-1 plasmid unnamed, complete sequence	194705-194734	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP041688	Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence	28680-28709	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	NZ_CP053966	Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence	49735-49764	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	MN693021	Marine virus AFVG_117M32, complete genome	27306-27335	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	MH552526	Siphoviridae sp. isolate ctfj46, complete genome	72613-72642	7	0.767
NZ_CP018791_1	1.4\|523840\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523840-523869	30	MN855721	Myoviridae sp. isolate 53, complete genome	10735-10764	7	0.767
NZ_CP018791_1	1.6\|523972\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523972-524001	30	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	221658-221687	7	0.767
NZ_CP018791_1	1.6\|523972\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523972-524001	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	42447-42476	7	0.767
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	AJ635161	Pyrobaculum spherical virus complete genome	25088-25116	7	0.759
NZ_CP018791_1	1.9\|524168\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524168-524197	30	NC_014023	Bacillus megaterium QM B1551 plasmid pBM700, complete sequence	26997-27026	7	0.767
NZ_CP018791_1	1.10\|524234\|30\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524234-524263	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	611575-611604	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MN694246	Marine virus AFVG_250M226, complete genome	4094-4123	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	120420-120449	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	97025-97054	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_CP018741	Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence	830-859	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	360426-360455	7	0.767
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	181030-181059	7	0.767
NZ_CP018791_1	1.1\|523642\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523642-523671	30	MF417933	Uncultured Caudovirales phage clone 7S_4, partial genome	8698-8727	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	CP051272	Salmonella phage SW-70, complete genome	38871-38900	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	11997-12026	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	CP051278	Salmonella phage ST-87, complete genome	22804-22833	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	CP051288	Salmonella phage ST-29, complete genome	35648-35677	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	CP051285	Salmonella phage ST-32, complete genome	28742-28771	8	0.733
NZ_CP018791_1	1.2\|523708\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	523708-523737	30	NC_014900	Salmonella phage ST160, complete genome	12065-12094	8	0.733
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MN966730	Vibrio phage Cilsick, complete genome	98661-98689	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT460516	Vibrio phage Quinn, complete genome	98213-98241	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MG649967	Vibrio virus Thalassa, complete genome	98986-99014	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT460515	Vibrio phage Cody, complete genome	98332-98360	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	AP013520	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26	1431-1459	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT448616	Vibrio phage BBMuffin, complete genome	99822-99850	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MK796244	Vibrio phage Achelous, complete genome	99097-99125	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT460518	Vibrio phage Direpillow8, complete genome	99084-99112	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MN966731	Vibrio phage Chazly21, complete genome	99452-99480	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MK907780	Vibrio phage Pontus, complete genome	99513-99541	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	NC_042095	Vibrio phage Thalassa, complete genome	98986-99014	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MN958086	Vibrio phage Bennett, complete genome	98807-98835	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT460517	Vibrio phage Athena, complete genome	98330-98358	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT448617	Vibrio phage River4, complete genome	98663-98691	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MT459144	Vibrio phage Dax, complete genome	99399-99427	8	0.724
NZ_CP018791_1	1.7\|524038\|29\|NZ_CP018791\|CRISPRCasFinder,CRT,PILER-CR	524038-524066	29	MN966732	Vibrio phage Chester, complete genome	98664-98692	8	0.724
NZ_CP018791_1	1.15\|524564\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524564-524593	30	NC_007056	Staphylococcus phage EW, complete genome	1535-1564	8	0.733
NZ_CP018791_1	1.15\|524564\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524564-524593	30	AY954959	Bacteriophage EW, complete genome	1535-1564	8	0.733
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NZ_CP025686	Enterococcus faecium strain CBA7134 plasmid pCBA713402, complete sequence	16917-16946	8	0.733
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	61470-61499	8	0.733
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MN693442	Marine virus AFVG_25M134, complete genome	26682-26711	8	0.733
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	MN694085	Marine virus AFVG_250M500, complete genome	30197-30226	8	0.733
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_022778	Clostridium tetani 12124569 plasmid p12124569, complete sequence	16125-16154	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_004565	Clostridium tetani E88 plasmid pE88, complete sequence	22586-22615	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019154	Synechococcus phage ACG-2014b isolate Syn7803C28, complete genome	113467-113496	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019040	Synechococcus phage ACG-2014b isolate Syn7803C61, complete genome	95776-95805	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019044	Synechococcus phage ACG-2014b isolate Syn7803C69, complete genome	113467-113496	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019108	Synechococcus phage ACG-2014b isolate Syn7803US53, complete genome	113379-113408	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019061	Synechococcus phage ACG-2014b isolate Syn7803C92, complete genome	113379-113408	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019132	Synechococcus phage ACG-2014b isolate Syn9311C1, complete genome	113370-113399	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019041	Synechococcus phage ACG-2014b isolate Syn7803C66, complete genome	113458-113487	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019051	Synechococcus phage ACG-2014b isolate Syn7803C78, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019109	Synechococcus phage ACG-2014b isolate Syn7803US54, complete genome	113379-113408	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019043	Synechococcus phage ACG-2014b isolate Syn7803C68, complete genome	113379-113408	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019161	Synechococcus phage ACG-2014b isolate Syn7803C36, complete genome	113470-113499	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019049	Synechococcus phage ACG-2014b isolate Syn7803C76, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019060	Synechococcus phage ACG-2014b isolate Syn7803C91, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	NC_047719	Synechococcus phage ACG-2014b isolate Syn9311C4, complete genome	113951-113980	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019110	Synechococcus phage ACG-2014b isolate Syn7803US56, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019134	Synechococcus phage ACG-2014b isolate Syn7803C100, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019104	Synechococcus phage ACG-2014b isolate Syn7803US49, complete genome	113474-113503	9	0.7
NZ_CP018791_1	1.16\|524630\|30\|NZ_CP018791\|CRISPRCasFinder,CRT	524630-524659	30	KJ019042	Synechococcus phage ACG-2014b isolate Syn7803C67, complete genome	113472-113501	9	0.7

1. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 4, identity: 0.862

cttttttatactcattaatccaatctata	CRISPR spacer
gttctttatactcattaatccaatcttga	Protospacer
 **.**********************  *

2. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 5, identity: 0.828

cttttttatactcattaatccaatctata	CRISPR spacer
accttttatactcattattccaatccata	Protospacer
 ..************** *******.***

3. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 5, identity: 0.828

cttttttatactcattaatccaatctata	CRISPR spacer
accttttatactcattattccaatccata	Protospacer
 ..************** *******.***

4. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 5, identity: 0.828

cttttttatactcattaatccaatctata	CRISPR spacer
accttttatactcattattccaatccata	Protospacer
 ..************** *******.***

5. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_019726 (Staphylococcus phage JD007, complete genome) position: , mismatch: 5, identity: 0.833

attaaacttataccctttacaaacagctgg	CRISPR spacer
actattcttataccctgtacaaacagatgg	Protospacer
*.**  ********** ********* ***

6. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to LR215719 (Staphylococcus phage Stab21 genome assembly, chromosome: I) position: , mismatch: 5, identity: 0.833

attaaacttataccctttacaaacagctgg	CRISPR spacer
actattcttataccctgtacaaacagatgg	Protospacer
*.**  ********** ********* ***

7. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to AB853331 (Staphylococcus phage S25-4 DNA, complete genome) position: , mismatch: 5, identity: 0.833

attaaacttataccctttacaaacagctgg	CRISPR spacer
actattcttataccctgtacaaacagatgg	Protospacer
*.**  ********** ********* ***

8. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_022920 (Staphylococcus phage S25-3 DNA, complete genome) position: , mismatch: 5, identity: 0.833

attaaacttataccctttacaaacagctgg	CRISPR spacer
actattcttataccctgtacaaacagatgg	Protospacer
*.**  ********** ********* ***

9. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_023573 (Staphylococcus phage phiSA012 DNA, complete genome) position: , mismatch: 5, identity: 0.833

attaaacttataccctttacaaacagctgg	CRISPR spacer
actattcttataccctgtacaaacagatgg	Protospacer
*.**  ********** ********* ***

10. spacer 1.5|523906|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 6, identity: 0.8

acttaaagcatatttaatcgcctttgctag	CRISPR spacer
tgttaaagcatatttattcgcatttgcttc	Protospacer
  ************** **** ******

11. spacer 1.15|524564|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MT774409 (CrAssphage cr131_1, complete genome) position: , mismatch: 6, identity: 0.8

tacctataccgataaagacggaaatgttca	CRISPR spacer
tacatataccgataaagacggtaaaaaaca	Protospacer
*** ***************** ** .  **

12. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 6, identity: 0.8

aacata-taataataaaaatgctataattca	CRISPR spacer
-ttatattaataataaaaatactataattat	Protospacer
  .*** *************.********

13. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_HG813245 (Staphylococcus epidermidis PM221 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctataattca	CRISPR spacer
aacatataagattaaaaatgctattttcaa	Protospacer
********* * ************  *. *

14. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctataattca	CRISPR spacer
acaatattatattaaaaatgctataataga	Protospacer
*  **** *** ***************  *

15. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctataattca	CRISPR spacer
acaatattatattaaaaatgctataataga	Protospacer
*  **** *** ***************  *

16. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctataattca	CRISPR spacer
acaatattatattaaaaatgctataataga	Protospacer
*  **** *** ***************  *

17. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_015712 (Clostridium perfringens plasmid pCPPB-1, complete sequence) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctataattca	CRISPR spacer
gaaaaaaactaataaaaatgctttaattca	Protospacer
.* * * * ************* *******

18. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KX879627 (Campylobacter phage vB_CjeM_Los1, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

19. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MH107028 (Campylobacter phage CP39, partial genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

20. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

21. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

22. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to JX569801 (Campylobacter phage CP30A, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

23. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

24. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 6, identity: 0.8

aacatataataataaaaatgctat---aattca	CRISPR spacer
aaaatataataataaaaacgctactgaaat---	Protospacer
** ***************.****.   ***

25. spacer 3.1|1405717|28|NZ_CP018791|PILER-CR matches to MN694142 (Marine virus AFVG_250M416, complete genome) position: , mismatch: 6, identity: 0.786

cacgaatacactgattataaaatgccaa	CRISPR spacer
aacgattacactgattataaaaattcta	Protospacer
 **** ****************  .* *

26. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

27. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP009638 (Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

28. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

29. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP040341 (Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

30. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaacatgaagcgaa	Protospacer
 ****************** *** *..  *

31. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

32. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

33. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP016317 (Bacillus cereus strain M3 plasmid pBCM301, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaacatgaagcgaa	Protospacer
 ****************** *** *..  *

34. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

35. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP042928 (Bacillus cereus strain G1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

36. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP041688 (Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
agaaactgaaggtggtaaaaaagtaaaaaa	Protospacer
 .**.**************** ****   *

37. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP053966 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aaaagctgaaggtggtaaatatgaagcgaa	Protospacer
 ****************** *** *..  *

38. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MN693021 (Marine virus AFVG_117M32, complete genome) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
caaagctgaaggtggtagaattggccgtaa	Protospacer
*****************.** **    * *

39. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MH552526 (Siphoviridae sp. isolate ctfj46, complete genome) position: , mismatch: 7, identity: 0.767

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
aataaatgaagatggtaaatatgtaatttt	Protospacer
 * *. *****.******* *********

40. spacer 1.4|523840|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MN855721 (Myoviridae sp. isolate 53, complete genome) position: , mismatch: 7, identity: 0.767

aaaatagccgatactttgccatttagattt---	CRISPR spacer
caaatagccgatattatgccattt---ttcagc	Protospacer
 ************.* ********   **.

41. spacer 1.6|523972|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.767

tatctgctgtccatatatttttaatttcaa	CRISPR spacer
tctctgctctccatatagttttaatatttt	Protospacer
* ****** ******** ******* *.

42. spacer 1.6|523972|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.767

tatctgctg-tccatatatttttaatttcaa	CRISPR spacer
-acacattgctccatatattttgaatttcaa	Protospacer
 *. ...** ************ ********

43. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to AJ635161 (Pyrobaculum spherical virus complete genome) position: , mismatch: 7, identity: 0.759

cttttttatactcattaatccaatctata	CRISPR spacer
cacggatatactcattaatcctagctata	Protospacer
* .   *************** * *****

44. spacer 1.9|524168|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_014023 (Bacillus megaterium QM B1551 plasmid pBM700, complete sequence) position: , mismatch: 7, identity: 0.767

agcttatctaatccacttaaaggcgtgatt	CRISPR spacer
gaattatctaatccaattaaaggtgtgttg	Protospacer
.. ************ *******.*** *

45. spacer 1.10|524234|30|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

attaaacttataccctttacaaacagctgg	CRISPR spacer
attaaacttattgcctttacaaaaaaatat	Protospacer
***********  ********** *. *.

46. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MN694246 (Marine virus AFVG_250M226, complete genome) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
tatatatcataataaaaatactataatagc	Protospacer
 *.**** ***********.*******

47. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
aaaatatactaataaaaatgctaatataac	Protospacer
** ***** **************  **

48. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
atccgataattataaaaatgctataaacga	Protospacer
* *  ***** *************** . *

49. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP018741 (Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
atccgataattataaaaatgctataaacga	Protospacer
* *  ***** *************** . *

50. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
atccgataattataaaaatgctataaacga	Protospacer
* *  ***** *************** . *

51. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aacatataataataaaaatgctataattca	CRISPR spacer
atccgataattataaaaatgctataaacga	Protospacer
* *  ***** *************** . *

52. spacer 1.1|523642|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MF417933 (Uncultured Caudovirales phage clone 7S_4, partial genome) position: , mismatch: 8, identity: 0.733

caaagctgaaggtggtaaaaatgtaattta	CRISPR spacer
tccttataaaggtggtaaaaatgtaaatta	Protospacer
.     *.****************** ***

53. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

54. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

55. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

56. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

57. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

58. spacer 1.2|523708|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 8, identity: 0.733

tcatcgctagggctaaagtcgtaagaatta	CRISPR spacer
ccaacgctagggcttaagtcgtaaattatg	Protospacer
.** ********** *********.   *.

59. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MN966730 (Vibrio phage Cilsick, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

60. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

61. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

62. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

63. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to AP013520 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
aacaattatagtcattaatccaatatatt	Protospacer
  .  ***** ************* ***

64. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT448616 (Vibrio phage BBMuffin, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

65. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MK796244 (Vibrio phage Achelous, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

66. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

67. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MN966731 (Vibrio phage Chazly21, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

68. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MK907780 (Vibrio phage Pontus, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

69. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

70. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MN958086 (Vibrio phage Bennett, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

71. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT460517 (Vibrio phage Athena, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

72. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

73. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MT459144 (Vibrio phage Dax, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

74. spacer 1.7|524038|29|NZ_CP018791|CRISPRCasFinder,CRT,PILER-CR matches to MN966732 (Vibrio phage Chester, complete genome) position: , mismatch: 8, identity: 0.724

cttttttatactcattaatccaatctata	CRISPR spacer
gctttttatactcattaatacaacgtgcg	Protospacer
 .***************** ***. *...

75. spacer 1.15|524564|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_007056 (Staphylococcus phage EW, complete genome) position: , mismatch: 8, identity: 0.733

tacctataccgataaagacggaaatgttca	CRISPR spacer
ctttgaaacagataaagacggaaatgttaa	Protospacer
. .. * ** ****************** *

76. spacer 1.15|524564|30|NZ_CP018791|CRISPRCasFinder,CRT matches to AY954959 (Bacteriophage EW, complete genome) position: , mismatch: 8, identity: 0.733

tacctataccgataaagacggaaatgttca	CRISPR spacer
ctttgaaacagataaagacggaaatgttaa	Protospacer
. .. * ** ****************** *

77. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NZ_CP025686 (Enterococcus faecium strain CBA7134 plasmid pCBA713402, complete sequence) position: , mismatch: 8, identity: 0.733

aacatataataataaaaatgctataattca	CRISPR spacer
cgcatataataagaaaaatggtatacaaaa	Protospacer
 .********** ******* ****    *

78. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 8, identity: 0.733

aacatataataataaaaatgctataattca	CRISPR spacer
tttaagaaataagaaatatgctataattca	Protospacer
  .* . ***** *** *************

79. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MN693442 (Marine virus AFVG_25M134, complete genome) position: , mismatch: 8, identity: 0.733

aacatataataataaaaatgctataattca	CRISPR spacer
tcctgagaataataataatgctataattac	Protospacer
  *  * ******** ************

80. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to MN694085 (Marine virus AFVG_250M500, complete genome) position: , mismatch: 8, identity: 0.733

aacatataataataaaaatgctataattca	CRISPR spacer
agtttcagataataaaaatgctattattcc	Protospacer
*.. *  .**************** ****

81. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_022778 (Clostridium tetani 12124569 plasmid p12124569, complete sequence) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tggtaaaaataataaaaatgctattatttt	Protospacer
 .   * ***************** ***.

82. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_004565 (Clostridium tetani E88 plasmid pE88, complete sequence) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tggtaaaaataataaaaatgctattatttt	Protospacer
 .   * ***************** ***.

83. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019154 (Synechococcus phage ACG-2014b isolate Syn7803C28, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

84. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019040 (Synechococcus phage ACG-2014b isolate Syn7803C61, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

85. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019044 (Synechococcus phage ACG-2014b isolate Syn7803C69, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

86. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019108 (Synechococcus phage ACG-2014b isolate Syn7803US53, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

87. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019061 (Synechococcus phage ACG-2014b isolate Syn7803C92, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

88. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019132 (Synechococcus phage ACG-2014b isolate Syn9311C1, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

89. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019041 (Synechococcus phage ACG-2014b isolate Syn7803C66, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

90. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019051 (Synechococcus phage ACG-2014b isolate Syn7803C78, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

91. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019109 (Synechococcus phage ACG-2014b isolate Syn7803US54, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

92. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019043 (Synechococcus phage ACG-2014b isolate Syn7803C68, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

93. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019161 (Synechococcus phage ACG-2014b isolate Syn7803C36, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

94. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019049 (Synechococcus phage ACG-2014b isolate Syn7803C76, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

95. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019060 (Synechococcus phage ACG-2014b isolate Syn7803C91, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

96. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to NC_047719 (Synechococcus phage ACG-2014b isolate Syn9311C4, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

97. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019110 (Synechococcus phage ACG-2014b isolate Syn7803US56, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

98. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019134 (Synechococcus phage ACG-2014b isolate Syn7803C100, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

99. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019104 (Synechococcus phage ACG-2014b isolate Syn7803US49, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

100. spacer 1.16|524630|30|NZ_CP018791|CRISPRCasFinder,CRT matches to KJ019042 (Synechococcus phage ACG-2014b isolate Syn7803C67, complete genome) position: , mismatch: 9, identity: 0.7

aacatataataataaaaatgctataattca	CRISPR spacer
tacatatcatattaaaaatgctattgaatg	Protospacer
 ****** *** ************ .  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1304801 : 1316127

Alteromonas_phage(44.44%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086333964.1\|1304801_1307021_+	hypothetical protein	R4VMH1	Alteromonas_phage	5.3e-145	40.1
WP_086333965.1\|1307021_1308200_+	AAA family ATPase	E9NIG2	Enterobacter_phage	1.7e-20	24.2
WP_086333966.1\|1308199_1308628_+	hypothetical protein	NA	NA	NA	NA
WP_086333967.1\|1308614_1309439_+	PD-(D/E)XK nuclease family protein	R4W112	Alteromonas_phage	1.4e-37	39.7
WP_086333968.1\|1309426_1310092_+	AAA family ATPase	NA	NA	NA	NA
WP_086333969.1\|1310146_1310797_+	hypothetical protein	R4W116	Alteromonas_phage	5.2e-32	42.4
WP_086333970.1\|1310796_1311273_+	hypothetical protein	G9BW80	Planktothrix_phage	3.9e-13	33.8
WP_086333971.1\|1311265_1311538_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_086333972.1\|1311547_1313332_+	hypothetical protein	A0A0K1LMZ5	Caulobacter_phage	5.9e-110	39.9
WP_192940481.1\|1313328_1314330_+	ribonucleotide-diphosphate reductase subunit beta	R4VJW6	Alteromonas_phage	4.8e-53	38.8
WP_086333974.1\|1314459_1314759_+	hypothetical protein	F8TUZ8	EBPR_podovirus	3.7e-09	41.2
WP_086333975.1\|1314748_1315129_+	hypothetical protein	NA	NA	NA	NA
WP_086333976.1\|1315155_1315371_+	hypothetical protein	NA	NA	NA	NA
WP_086333977.1\|1315382_1315649_+	hypothetical protein	NA	NA	NA	NA
WP_086333978.1\|1315620_1316127_+	HNH endonuclease	A0A0E3GMP6	Bacillus_phage	5.0e-14	34.2

DBSCAN-SWA_2

1569521 : 1579537

Staphylococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086334123.1\|1569521_1572077_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.5e-93	40.9
WP_086334124.1\|1572076_1572757_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.1e-08	27.9
WP_152023668.1\|1572687_1573227_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.2e-11	34.2
WP_086334125.1\|1573245_1576314_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.7e-16	20.0
WP_086334126.1\|1576403_1577144_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_086334127.1\|1577170_1577614_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.4e-19	38.4
WP_086276752.1\|1577610_1578456_-	hypothetical protein	NA	NA	NA	NA
WP_086334128.1\|1578442_1579537_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A0U4J6Z1	Vibrio_phage	2.2e-22	34.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection