CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020890	Xanthomonas citri pv. citri strain TX160197 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP020889	Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome	5 crisprs	WYL,cas3,cas8c,cas7,cas4,cas1,DinG,RT,DEDDh,csa3	2	12	9	1
NZ_CP020891	Xanthomonas citri pv. citri strain TX160197 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7930 : 71510

Escherichia_phage(28.57%)

integrase,transposase

attL 12883:12898|attR 74053:74068

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942126.1\|7930_9086_+\|transposase	IS3-like element ISXc8 family transposase	U5P429	Shigella_phage	4.6e-47	41.0
WP_087979039.1\|9443_9647_+	hypothetical protein	NA	NA	NA	NA
WP_058958761.1\|9639_10356_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_150129304.1\|10356_10647_+	hypothetical protein	A0A0K0N7B5	Gordonia_phage	5.7e-07	51.2
WP_058958762.1\|10702_11008_+	hypothetical protein	NA	NA	NA	NA
WP_058958763.1\|11004_11808_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_017170416.1\|11813_12794_+	hypothetical protein	NA	NA	NA	NA
WP_058958764.1\|12806_14141_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	3.4e-86	40.5
12883:12898	attL	NA	NA	NA	NA
WP_015471495.1\|14490_15501_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|15500_16283_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_059024067.1\|16577_17762_-	hypothetical protein	V5YTD4	Pseudomonas_phage	2.2e-36	43.3
WP_058958774.1\|17938_18154_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017119528.1\|18235_19717_+	ATP-binding protein	NA	NA	NA	NA
WP_058958766.1\|20384_20786_-	hypothetical protein	NA	NA	NA	NA
WP_087979040.1\|23967_24369_-	hypothetical protein	NA	NA	NA	NA
WP_087979041.1\|24352_25606_-	hypothetical protein	NA	NA	NA	NA
WP_058958769.1\|25617_26754_-	M23 family metallopeptidase	G9FHQ8	Rhodococcus_virus	1.0e-06	41.2
WP_017119469.1\|26750_27194_-	hypothetical protein	NA	NA	NA	NA
WP_087979042.1\|27193_28387_-	hypothetical protein	NA	NA	NA	NA
WP_058958771.1\|28391_29528_-	hypothetical protein	NA	NA	NA	NA
WP_017170406.1\|29529_30288_-	hypothetical protein	NA	NA	NA	NA
WP_050545333.1\|30292_31135_-	hypothetical protein	NA	NA	NA	NA
WP_017119544.1\|31127_31619_-	hypothetical protein	NA	NA	NA	NA
WP_087979043.1\|31736_37406_-	hypothetical protein	NA	NA	NA	NA
WP_017172439.1\|37563_38856_-	hypothetical protein	NA	NA	NA	NA
WP_017170402.1\|39385_40126_+	hypothetical protein	NA	NA	NA	NA
WP_150129303.1\|42064_42442_-	hypothetical protein	NA	NA	NA	NA
WP_087979045.1\|42404_43700_+	AAA family ATPase	A0A172JHZ0	Bacillus_phage	4.4e-83	44.7
WP_059024070.1\|43696_44029_+	hypothetical protein	A0A291LA57	Bordetella_phage	2.7e-13	46.7
WP_087979046.1\|44025_44220_+	hypothetical protein	A0A291LAU4	Bordetella_phage	1.4e-14	67.2
WP_017120322.1\|44881_45505_+	hypothetical protein	NA	NA	NA	NA
WP_058958806.1\|46160_46562_+	hypothetical protein	NA	NA	NA	NA
WP_087979047.1\|46956_47940_+	hypothetical protein	NA	NA	NA	NA
WP_078586901.1\|48121_48412_+	hypothetical protein	NA	NA	NA	NA
WP_087979016.1\|48630_49641_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	7.7e-75	47.3
WP_015471496.1\|49640_50423_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_059024072.1\|51066_51594_-	hypothetical protein	NA	NA	NA	NA
WP_087979048.1\|51792_51972_-	hypothetical protein	NA	NA	NA	NA
WP_045123443.1\|51920_52902_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.1e-97	60.3
WP_058958828.1\|53218_54106_-	hypothetical protein	NA	NA	NA	NA
WP_087979049.1\|54102_54774_-	glycosyl transferase	NA	NA	NA	NA
WP_058958827.1\|54836_55289_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_059024074.1\|55285_55858_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_058958825.1\|55854_56475_-	hypothetical protein	NA	NA	NA	NA
WP_058958824.1\|56559_59679_-	TraM recognition domain-containing protein	V9LZG7	Vibrio_phage	1.9e-18	30.9
WP_058958823.1\|59694_62763_-	type IV secretion protein DotO	NA	NA	NA	NA
WP_017120760.1\|62759_62948_-	hypothetical protein	NA	NA	NA	NA
WP_058958822.1\|62944_64135_-	hypothetical protein	NA	NA	NA	NA
WP_058958821.1\|64144_64828_-	HNH endonuclease	NA	NA	NA	NA
WP_017120139.1\|64877_65270_-	hypothetical protein	NA	NA	NA	NA
WP_017170382.1\|65287_65884_-	hypothetical protein	NA	NA	NA	NA
WP_058958820.1\|65927_66527_-	hypothetical protein	NA	NA	NA	NA
WP_087979050.1\|66536_67979_-	hypothetical protein	NA	NA	NA	NA
WP_017170379.1\|67987_68956_-	hypothetical protein	NA	NA	NA	NA
WP_017170378.1\|68965_69694_-	hypothetical protein	NA	NA	NA	NA
WP_017120595.1\|69683_69911_-	hypothetical protein	NA	NA	NA	NA
WP_058958818.1\|70343_71510_-\|integrase	site-specific integrase	NA	NA	NA	NA
74053:74068	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020889

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020889_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020889_1

2019258-2019491

TypeI

I-C

Consensus_repeat	Method
GGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	PILER-CR
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRT

3 spacers

cas1,cas4,cas7,cas8c,cas3

The CRISPR arrays of NZ_CP020889_1

>merge|NZ_CP020889|1|2019258-2019491|PILER-CR,CRISPRCasFinder,CRT
GGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|1|1|2019258-2019491|PILER-CR
GGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCA
GGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGC
CGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGC
GTCGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|1|1|2019261-2019491|CRISPRCasFinder
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTC
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|1|1|2019261-2019491|CRT
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTC
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020889.1\|WP_003484546.1\|2024018_2024834_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP020889.1\|WP_015463671.1\|2009431_2011132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP020889.1\|WP_015471496.1\|2020587_2021370_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP020889.1\|WP_011052564.1\|2034648_2036016_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP020889.1\|WP_005927101.1\|2016208_2017075_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP020889.1\|WP_015471495.1\|2019577_2020588_+\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP020889.1\|WP_005927109.1\|2011295_2013590_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP020889.1\|WP_011052559.1\|2022960_2023518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP020889.1\|WP_003484508.1\|2003881_2005621_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|368840
NZ_CP020889.1\|WP_015472886.1\|2031325_2034466_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP020889.1\|WP_015463669.1\|2006666_2006927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_003484541.1\|2005617_2006565_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP020889.1\|WP_005927098.1\|2017094_2017727_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP020889.1\|WP_015472885.1\|2017729_2018764_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP020889.1\|WP_075150087.1\|2027839_2031145_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182501
NZ_CP020889.1\|WP_005927086.1\|2023622_2023916_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236880
NZ_CP020889.1\|WP_087978981.1\|2026558_2027803_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP020889.1\|WP_015472884.1\|2014343_2016212_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP020889.1\|WP_015463674.1\|2024992_2026300_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349917
NZ_CP020889.1\|WP_011052553.1\|2006998_2009230_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178

Protein	Function_ID	Function_description	E-value
NZ_CP020889.1\|WP_003484546.1\|2024018_2024834_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	1.23043e-172
NZ_CP020889.1\|WP_015463671.1\|2009431_2011132_+\|hypothetical-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	4.52622e-11
NZ_CP020889.1\|WP_015471496.1\|2020587_2021370_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP020889.1\|WP_011052564.1\|2034648_2036016_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP020889.1\|WP_005927101.1\|2016208_2017075_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.97013e-155
NZ_CP020889.1\|WP_015471495.1\|2019577_2020588_+\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP020889.1\|WP_005927109.1\|2011295_2013590_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.95062e-57
NZ_CP020889.1\|WP_011052559.1\|2022960_2023518_-\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00507177
NZ_CP020889.1\|WP_003484508.1\|2003881_2005621_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|368840	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116).	0
NZ_CP020889.1\|WP_015472886.1\|2031325_2034466_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP020889.1\|WP_003484541.1\|2005617_2006565_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.08602e-67
NZ_CP020889.1\|WP_005927098.1\|2017094_2017727_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.37841e-44
NZ_CP020889.1\|WP_015472885.1\|2017729_2018764_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP020889.1\|WP_075150087.1\|2027839_2031145_+\|MMPL-family-transporter	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP020889.1\|WP_005927086.1\|2023622_2023916_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	4.66511e-26
NZ_CP020889.1\|WP_087978981.1\|2026558_2027803_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.21267e-94
NZ_CP020889.1\|WP_015472884.1\|2014343_2016212_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP020889.1\|WP_015463674.1\|2024992_2026300_-\|amidohydrolase	gnl\|CDD\|349917	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins that have been predicted as N-acyl-L-amino acid amidohydrolase (amaA), thermostable carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus solfataricus) and abgB (aminobenzoyl-glutamate utilization protein B), and generally are involved in the urea cycle and metabolism of amino groups. Aminoacylases 1 (ACY1s) comprise a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and is a highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP020889.1\|WP_011052553.1\|2006998_2009230_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0

>NZ_CP020889.1|WP_015472885.1|2017729_2018764_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVGHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK
>NZ_CP020889.1|WP_005927098.1|2017094_2017727_+|CRISPR-associated-protein-Cas4
MDDDDLIPLSALQHYLYCPRQCALIHVERQWAENRHTAEGRLLHERADVAHTQRRRGVRTVTAMPLLALELGITGKADVVEFHHDPAGEFAFPVEYKRGRPKSHRADEVQLCAQALCLESMLKRPVDAGALFYGQTRRRKDVVFDPALRELTQRTIAETRALLSHGLTPGARYDSKRCDACSLIDLCQPRLLGRGSVDTWLRRQLDAEEE
>NZ_CP020889.1|WP_005927101.1|2016208_2017075_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIAHRYEFVYLFDVANGNPNGDPDAGNLPRLDPETNRGLVTDVALKRKIRNYVALEKDNAPGYTIYMQEKSVLNNQHKQAYTALGIEHEAKKLPKEGDKARQLTAWMCENFFDVRTFGAVMTTEVNTGQVRGPVQLAFATSVEPVLPLEVSITRVAVTNEKDLEKERTMGRKHILPYGLYRAHGFVSAKLAERTGFSEEDLQLLWRALTNLFEHDRSAARGEMAARKLIVFEHEHPMGNAPAHVLFDKVKVERIDQADQGPARSFSDYRVVIDHALPAGVSVTELF
>NZ_CP020889.1|WP_015472884.1|2014343_2016212_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALADYYHRLLDDPTSGIAAPGYSQEKIGYTIVLDGGGRVVAVEDEHDYDSKKRVAKALSVPQPEKRTVAVKSNFLWDKTSYALGVSASSKRSAQEHAAFKTLHQQALGGSEDPGLRALLTFLDTWSPAQFADHPQFSRHGEALLDTNLVFRLEGDTGYLHQRATARAAWERLQGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQATQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKAGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT
>NZ_CP020889.1|WP_005927109.1|2011295_2013590_+|CRISPR-associated-endonuclease-Cas3''
MDFFAHSTKRQDRSDWQRLADHLLAVGERAARNAAPFGGQLLASLAGQLHDLGKYTQKFQGRLDGDPARVDHATWGARIACERYGTAGTLLAYGIAGHHAGLADGRPGHAAQSRPSLHERLSEDYRERELPPLLSDWERELSLPAKLALPDGFIGHPRQERRPFQLTVLTRMIFSCLVDSDFTETDDFYRRLEGRQSRAEDTGTRPALPELRQCLDAHLSTLPTEGGINPLRAQILSEVRAKAGMRPGLFSLTVPTGGGKTLASLAFALDHAIAHGLRRVIYVIPFTSIVEQTVQVFRHALGVQERDDIVLEHHSAFFDDPTKAPQSIDKRKLAMENWDAPIVVTTAVQFFESLFADRPSRCRKLHNIAGSVVVLDEAQTLPHALLRPCVALLDELARNYRVSPVLCTATQPTLRLDQGFVGGLDQVRELVDDPPALYARLRRVQVRHVGTLDDAALTDHLRQREQVLCIVNNRRHARHLFDAIADRPGARHLTTLMHARHRSAVLAELREDLKAGRPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGLRPVEVSQVQVFAPANPDWAPPKELDLFAEVFRGIERTHRNDLLAMAAVADYFAALYRRLGDGRLDREDVLGLLRDADIKGLPLDTLARKFKMIQTTLRPLIVPYAPYAEGCDKEVPEVADILRQLEHAEHVGVAGAARRLQPWLVQVPEQAYRALWQANAIAPVAQARYGEQFVRLVNPRLYDPRFGLRWDDSPQFLAAEALVQ
>NZ_CP020889.1|WP_015463671.1|2009431_2011132_+|hypothetical-protein
MTARFSPADLDRSFLLGITTPSYYARGLVYADQDRVTLQTVEALRVDALVSGSDDYAVELVWRNGRLLGRCDCPVGQQAEFCKHQVAVALSWARTSADPSSQKRTKRTTAGMPVAESSDRVLQHWLSTLTTQALQALILELADNDVQLRKRLLSQAQLAVAPLQQWRKAISTLLGRKRFMDWSATIAYSRQLGVLPSLLEQARQRDPLAALDLHEYAFKRLLAIYEEVDDSRGDLGERLRVLGHAHLEAARAAGTDTLGDRLFELRMLDQWSLLRPLQDYAALLSATDIARLQHAALEILHARGNRARRLSAESLLEDTARCGGSVDAMLEFFAHTCSSGWDHLEMARRCGEHGRQRQALEWLERGVKADPQDGRLLAALATAYVHDGFPEDALTLRWKAYLLMPNEETYLALQEAASLLDAWEAWRERALQALDTKAVPRFIDAHDTRISLLLAEEQIQRALELAADQTRKLPLGTWEQLLPAAETCDPAAALRICHTVIGMHIERTVRQGYVAAIRLLPTLQRLYQQQGGQGHAAFDAELARLRQQYRVKRTFIELLHKRFPAP
>NZ_CP020889.1|WP_011052553.1|2006998_2009230_-|NADP-dependent-isocitrate-dehydrogenase
MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQIADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLSETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPDLAKVSESMRPSKTFNDILATLKA
>NZ_CP020889.1|WP_015463669.1|2006666_2006927_+|hypothetical-protein
MRIFSELLFQHGHIADVALAQRLAEPDTAAEAMQRHTARESLGSPVSPQPNVQTMTDPPSQTRRERRIARLSRRLLRGVTALSPFR
>NZ_CP020889.1|WP_003484541.1|2005617_2006565_-|LysR-family-transcriptional-regulator
MSRPPLHALQGFVSAVRLGNLSRAAGAMHLTVSALSHQMRALEQRLGYPLLQRHARGVTATPQGQQLLDRIAPHLDAIAEAFEPFGARREDTLTLSLTPSMASAWLVPRLGEFLASHPTIEINLLSSERLVDFERQQQVDAAMRIGAGQWPGVIAEPLFDEWLVPMASPALIARMGGVEAPPLHQWPLLGDPDDAWSRWFAAFGGDVPRRYVAVLDESEAHHRAALDGVGVALGRVTRARLLLASGQLVALSTQRLKTSWSHYLVYPPRSSTHGGFLAFRTWLQGQAREHAAHAQQATATPLAARRRKRSGTPSP
>NZ_CP020889.1|WP_003484508.1|2003881_2005621_-|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MNHPSLPPQSERRALAIAQAVYEAFEDYHARFSEITACAKQRFETRDWSGAREDAVARIALYDQYIAECMLRLRAVLLGQAHDRALWMRARDRYAALLSGLIDQELYKTFYNTLTRRYFGTHGVDADIEFIALDIEPTDAITVPVARHTYAVSPGRLTDMLVRVLGDYAFAVPYAHRTRCAAAIAVRLLDDLAHWGEHPVRSVELLETVFYRERRAYLVGRVFGEHRFSPCVIALINDDAGLRAEAVLTRRSDVAQLFSNSRSYFQADLSTVGDAVVFLRSLLTHKPVDELYTMLGRAKQGKTERYRTFFSHFQAHPSEQLVHADGTPGMVMVVFTLPSYPLVFKLIRDRFAYPKTMSRAQVEGKYELVFQLDRIGRLLDAQPYRFLRFPKARFSPALLQELQTSCAMSLSEDGDDVLIALCYVQRRLRPLNLYLREQLPEAAHAAALDYGQAIKDMARNNIFPGDMLLKNFGITRHQRAVFYDYDELCLITECNFRDWPTPATYEEQMAAEPWFHVGPRDVFPERFALFMGLPSSQLEAVKHQHPELFDPRWWRDLQSRLRDDDYPDTPPYAESRRLA
>NZ_CP020889.1|WP_015471495.1|2019577_2020588_+|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP020889.1|WP_015471496.1|2020587_2021370_+|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP020889.1|WP_011052559.1|2022960_2023518_-|hypothetical-protein
MRTTSVSSSLALALAGVLAVSGCSKKADDDSVSKDPTSGAATEAMPGPAATPPASDQAAQGSATGAASTDGGAATGSAVTVSSVAVGTQAAADKTVTPATSVGSKDTIIVSVKTDGSASNVAVSAKLTYQDGQVAGEQNATLNTTGAETTNLSFSKPDGWPAGTYTAQVMVDGKPAGTPQTIIVK
>NZ_CP020889.1|WP_005927086.1|2023622_2023916_-|LysM-peptidoglycan-binding-domain-containing-protein
MSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQAGDSLSSIAKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPPKS
>NZ_CP020889.1|WP_003484546.1|2024018_2024834_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MNTPEDSTLGREVAYPSGYDPSLLFPIPRAAGRQAIGLTGDLPFIGRDRWHAYELSWLDAQGKPCVATATLHVPCDSPSLIESKSLKLYLNSLNATRFNSAEAVRTRIATDLSTRAGADVAVEFGLPPIDAVGEGESIDALDLSIDDYGPPNAAYLCAHAQPVVEEVLTSALLKSNCPVTGQPDWASVTLRYRGAPIDREGLLRYLVSFRDHAEFHEQCVERIFNDVLTQCAPQWLVVEARYTRRGGLDINPLRSSASVPTPLSIFRDLRQ
>NZ_CP020889.1|WP_015463674.1|2024992_2026300_-|amidohydrolase
MRPSRLLTSALLLALPMLATAQTAQRPDVQAAAAPLQAKVVQWRRDFHQHPELSNREERTAATVAAQLRKLGLKPRTGIAHHGVVAIIKGAKPGPKIALRADMDALPVTEQTGLPFASKATAEYRGEQVGVMHACGHDAHTAILLGVAEALVGMREQLPGEVMLIFQPSEEGAPGNEEGGASLMLKEGLFADFTPQAVFGLHVFSSVQAGKIAVRSGPLMAASDRFAIKMIGRQTHGSAPWNGIDPIVASADMIGAAQTVISRRANLSKQPAVLSFGAIKGGIRYNIIPDDVEMVGTIRTFDEGMRQQIFADLKNVAEHTAAAHGAKVQAQVPDQPGNPATVNDPALTARMLPSLQAVVGADNVYEPPLQMGAEDFSFYAQQVPSMFFFVGSTAKGIDPATAPSNHSPQFLLDESSLDVGLRALLQVSLDYLQQG
>NZ_CP020889.1|WP_087978981.1|2026558_2027803_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRFWKVTLLVVAVLVVVFVAVRMMGGGNHGKRAGAPDGNDPDNSGPVPVTVVAATTQDVPVYASALGTVTALNTVTVSPQVGGQLMSLNFKEGQEVKKGDLLAQIDPRTLQASYDQALAAKRQNQALLATSRVNYQRSNDPAYKQYVSRTDLDTQRNQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGIAGIRGVDVGNIVTSSSTIVTLTQIRPIYVSFNLPERELQAVRTGQTAAPLAVAALDRGDAHVISSDGKLDVIDNRISADSGTFGARAIFNNTDNALWPGQFVNVRLQLRTIAGGTVVPSQSVQRGPDDDYVYVVGSDNTAQMRTVVQGVEVDDSHVQITKGLKPGERVVTEGQFRLKPGSKVSALKPGETPPEPTEAELKAAKDKQSRGGGPGGRRGGGPR
>NZ_CP020889.1|WP_075150087.1|2027839_2031145_+|MMPL-family-transporter
MRRRCMRRLRLTSSARTPPVGFSTIFIRRPIATSLLMAGVLLLGILGYRQLPVSALPEIDAPSLVVTTQYPGANATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQATLPSSLPYQPVYNRVNPADAAILTLKLTSDSLPLREVNRYADAILAQRLSQVPGVGLVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTNDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNLWTRTVGAYERSLDWVLAHQPLTLAVAIGAVALTVVLYVAIPKGLLPEQDTGLITGVVQADQNVAFPQMEQRTQAVAAALRKDPAVTGVAAFIGAGTMNPTLNQGQLSIVLKTRGDREGLDEVLPRLQNAVAGIPGVALFLKPVQDVTLDTRVAATEYQYSISDVDSSELATWAGRMTEAMRKLPELADVDNNLANQGRALELSIDRDKASMLGVPMQTIDDTLYDSFGQRQISTIFTELNQYRVVLEVAPEFRTSTALMNQLAVASNGSGALTGTNATSFGQVTSSNSSTATGVGAQNTGIVVGAGSIIPLAALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQFVGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIDARREGATAHDAIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMERAGERLRAWRARRAARRDGLNPAPTSERPA
>NZ_CP020889.1|WP_015472886.1|2031325_2034466_+|efflux-RND-transporter-permease-subunit
MNISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIFVHATQSGADASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINASQSDLPSGLGTPMYSKANPNDDPVIAIALTSETQSADELYNVADSLLAQRLRQITGISSVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISNDSVSKAADFAQLAISTQSNGRIVRLGDVATVDDGQQDAYQAAWFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPETPDRFGAWLDRMHERMLRAYTVALDFSLRHALLLSLTPLLLIAATIFLGSAVKKGSFPAQDTGLIWGRANSSATVSFADMVSRQRRITDMLMADPAVKTVGARLGSGRQGSSASFNIELKKRDEGRRDTTAEVVARLSAKADRYPDLDLRLRAIQDLPSDGGGGTSQGAQYRVSLQGNDLAQLQEWLPKLQAALKKNPHLRDVGTDVDTAGLRQNIVIDRAKAARLGISVGAIDGALYGAFGQRSISTIYSDLNQYSVVVNALPSQTATPKALDQIFVPNRAGQMVPITAVATQAPGLAPPQIIHENQYTTMELSYNLAPGVSTGEADLIIKSTVEGLRMPDGIRLSGDDSFNVQLSPNSMGILLLAAVLTVYIVLGMLYESLIHPVTILSTLPAAGVGALLALFITNTELSVISMIALVLLIGIVKKNAIMMIDFALVAQRVHGMDARAAAREASIVRFRPIMMTTMVAILAAVPLAVGLGEGSELRRPLGIAMIGGLVFSQSLTLLSTPALYVIFSCLSERWKARRARARARRAERAAARRPAAQAH
>NZ_CP020889.1|WP_011052564.1|2034648_2036016_-|VOC-family-protein
MRDTAFISPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALREQAQQILQQRQIFTVGALQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQMQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA

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Crispr_ID: NZ_CP020889_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020889_2

2021546-2022830

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRT

19 spacers

cas1,cas4,cas7,cas8c,cas3

The CRISPR arrays of NZ_CP020889_2

>merge|NZ_CP020889|2|2021546-2022830|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCTCACGGGCGCGTGGATTGAAACTCGAGCGCATCGATGACGGTCACCCATCCCCCAATGGTCGCGCCCTCACGGGCGCGTGGATTGAAACGTGCCACCGACAGCGACGCACGTGGACCTGCAGATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCTGTCGCGCCCTCACGGGCGCGTGGATTGAAACGGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCCATCATGCTTTGAATGCGCTTACCCACGGCGAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCGGATATGTGATTAGACCCTTTTACGACTTTCAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACATGTCGAAAACGATGGCCTTGACGTCATCGTCTGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTCATTGAACCCAAGGACCACTTCGCAGGGCGACTGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGACCACATGTTCTCTCTGTGGGAGGAAGGCACGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGACTATCCCTGCATAGGCCACGACCTGCGAGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGTTTCGCGCCCTCATGGGCGCGTGGATTGAAACCATGCCATATGCGGCGAGATCGCACAGCAGAAGGAAGGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|2|2|2021546-2022830|PILER-CR
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|2|2|2021546-2022830|CRISPRCasFinder
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP020889|2|2|2021546-2022830|CRT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020889.1\|WP_003484546.1\|2024018_2024834_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP020889.1\|WP_015463671.1\|2009431_2011132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP020889.1\|WP_015471496.1\|2020587_2021370_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP020889.1\|WP_005927101.1\|2016208_2017075_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP020889.1\|WP_015471495.1\|2019577_2020588_+\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP020889.1\|WP_005927109.1\|2011295_2013590_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP020889.1\|WP_011052559.1\|2022960_2023518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP020889.1\|WP_011052564.1\|2034648_2036016_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP020889.1\|WP_015463669.1\|2006666_2006927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_015472886.1\|2031325_2034466_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP020889.1\|WP_005927098.1\|2017094_2017727_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP020889.1\|WP_015472885.1\|2017729_2018764_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP020889.1\|WP_099521980.1\|2036025_2036289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_075150205.1\|2036179_2036827_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_075150087.1\|2027839_2031145_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182501
NZ_CP020889.1\|WP_005927086.1\|2023622_2023916_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236880
NZ_CP020889.1\|WP_087978981.1\|2026558_2027803_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP020889.1\|WP_015472884.1\|2014343_2016212_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP020889.1\|WP_015463674.1\|2024992_2026300_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349917
NZ_CP020889.1\|WP_011052553.1\|2006998_2009230_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178

Protein	Function_ID	Function_description	E-value
NZ_CP020889.1\|WP_003484546.1\|2024018_2024834_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	1.23043e-172
NZ_CP020889.1\|WP_015463671.1\|2009431_2011132_+\|hypothetical-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	4.52622e-11
NZ_CP020889.1\|WP_015471496.1\|2020587_2021370_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP020889.1\|WP_005927101.1\|2016208_2017075_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.97013e-155
NZ_CP020889.1\|WP_015471495.1\|2019577_2020588_+\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP020889.1\|WP_005927109.1\|2011295_2013590_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.95062e-57
NZ_CP020889.1\|WP_011052559.1\|2022960_2023518_-\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00507177
NZ_CP020889.1\|WP_011052564.1\|2034648_2036016_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP020889.1\|WP_015472886.1\|2031325_2034466_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP020889.1\|WP_005927098.1\|2017094_2017727_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.37841e-44
NZ_CP020889.1\|WP_015472885.1\|2017729_2018764_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP020889.1\|WP_075150087.1\|2027839_2031145_+\|MMPL-family-transporter	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP020889.1\|WP_005927086.1\|2023622_2023916_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	4.66511e-26
NZ_CP020889.1\|WP_087978981.1\|2026558_2027803_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.21267e-94
NZ_CP020889.1\|WP_015472884.1\|2014343_2016212_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP020889.1\|WP_015463674.1\|2024992_2026300_-\|amidohydrolase	gnl\|CDD\|349917	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins that have been predicted as N-acyl-L-amino acid amidohydrolase (amaA), thermostable carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus solfataricus) and abgB (aminobenzoyl-glutamate utilization protein B), and generally are involved in the urea cycle and metabolism of amino groups. Aminoacylases 1 (ACY1s) comprise a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and is a highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP020889.1\|WP_011052553.1\|2006998_2009230_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0

>NZ_CP020889.1|WP_015471496.1|2020587_2021370_+|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP020889.1|WP_015471495.1|2019577_2020588_+|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP020889.1|WP_015472885.1|2017729_2018764_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVGHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK
>NZ_CP020889.1|WP_005927098.1|2017094_2017727_+|CRISPR-associated-protein-Cas4
MDDDDLIPLSALQHYLYCPRQCALIHVERQWAENRHTAEGRLLHERADVAHTQRRRGVRTVTAMPLLALELGITGKADVVEFHHDPAGEFAFPVEYKRGRPKSHRADEVQLCAQALCLESMLKRPVDAGALFYGQTRRRKDVVFDPALRELTQRTIAETRALLSHGLTPGARYDSKRCDACSLIDLCQPRLLGRGSVDTWLRRQLDAEEE
>NZ_CP020889.1|WP_005927101.1|2016208_2017075_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIAHRYEFVYLFDVANGNPNGDPDAGNLPRLDPETNRGLVTDVALKRKIRNYVALEKDNAPGYTIYMQEKSVLNNQHKQAYTALGIEHEAKKLPKEGDKARQLTAWMCENFFDVRTFGAVMTTEVNTGQVRGPVQLAFATSVEPVLPLEVSITRVAVTNEKDLEKERTMGRKHILPYGLYRAHGFVSAKLAERTGFSEEDLQLLWRALTNLFEHDRSAARGEMAARKLIVFEHEHPMGNAPAHVLFDKVKVERIDQADQGPARSFSDYRVVIDHALPAGVSVTELF
>NZ_CP020889.1|WP_015472884.1|2014343_2016212_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALADYYHRLLDDPTSGIAAPGYSQEKIGYTIVLDGGGRVVAVEDEHDYDSKKRVAKALSVPQPEKRTVAVKSNFLWDKTSYALGVSASSKRSAQEHAAFKTLHQQALGGSEDPGLRALLTFLDTWSPAQFADHPQFSRHGEALLDTNLVFRLEGDTGYLHQRATARAAWERLQGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQATQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKAGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT
>NZ_CP020889.1|WP_005927109.1|2011295_2013590_+|CRISPR-associated-endonuclease-Cas3''
MDFFAHSTKRQDRSDWQRLADHLLAVGERAARNAAPFGGQLLASLAGQLHDLGKYTQKFQGRLDGDPARVDHATWGARIACERYGTAGTLLAYGIAGHHAGLADGRPGHAAQSRPSLHERLSEDYRERELPPLLSDWERELSLPAKLALPDGFIGHPRQERRPFQLTVLTRMIFSCLVDSDFTETDDFYRRLEGRQSRAEDTGTRPALPELRQCLDAHLSTLPTEGGINPLRAQILSEVRAKAGMRPGLFSLTVPTGGGKTLASLAFALDHAIAHGLRRVIYVIPFTSIVEQTVQVFRHALGVQERDDIVLEHHSAFFDDPTKAPQSIDKRKLAMENWDAPIVVTTAVQFFESLFADRPSRCRKLHNIAGSVVVLDEAQTLPHALLRPCVALLDELARNYRVSPVLCTATQPTLRLDQGFVGGLDQVRELVDDPPALYARLRRVQVRHVGTLDDAALTDHLRQREQVLCIVNNRRHARHLFDAIADRPGARHLTTLMHARHRSAVLAELREDLKAGRPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGLRPVEVSQVQVFAPANPDWAPPKELDLFAEVFRGIERTHRNDLLAMAAVADYFAALYRRLGDGRLDREDVLGLLRDADIKGLPLDTLARKFKMIQTTLRPLIVPYAPYAEGCDKEVPEVADILRQLEHAEHVGVAGAARRLQPWLVQVPEQAYRALWQANAIAPVAQARYGEQFVRLVNPRLYDPRFGLRWDDSPQFLAAEALVQ
>NZ_CP020889.1|WP_015463671.1|2009431_2011132_+|hypothetical-protein
MTARFSPADLDRSFLLGITTPSYYARGLVYADQDRVTLQTVEALRVDALVSGSDDYAVELVWRNGRLLGRCDCPVGQQAEFCKHQVAVALSWARTSADPSSQKRTKRTTAGMPVAESSDRVLQHWLSTLTTQALQALILELADNDVQLRKRLLSQAQLAVAPLQQWRKAISTLLGRKRFMDWSATIAYSRQLGVLPSLLEQARQRDPLAALDLHEYAFKRLLAIYEEVDDSRGDLGERLRVLGHAHLEAARAAGTDTLGDRLFELRMLDQWSLLRPLQDYAALLSATDIARLQHAALEILHARGNRARRLSAESLLEDTARCGGSVDAMLEFFAHTCSSGWDHLEMARRCGEHGRQRQALEWLERGVKADPQDGRLLAALATAYVHDGFPEDALTLRWKAYLLMPNEETYLALQEAASLLDAWEAWRERALQALDTKAVPRFIDAHDTRISLLLAEEQIQRALELAADQTRKLPLGTWEQLLPAAETCDPAAALRICHTVIGMHIERTVRQGYVAAIRLLPTLQRLYQQQGGQGHAAFDAELARLRQQYRVKRTFIELLHKRFPAP
>NZ_CP020889.1|WP_011052553.1|2006998_2009230_-|NADP-dependent-isocitrate-dehydrogenase
MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQIADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLSETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPDLAKVSESMRPSKTFNDILATLKA
>NZ_CP020889.1|WP_015463669.1|2006666_2006927_+|hypothetical-protein
MRIFSELLFQHGHIADVALAQRLAEPDTAAEAMQRHTARESLGSPVSPQPNVQTMTDPPSQTRRERRIARLSRRLLRGVTALSPFR
>NZ_CP020889.1|WP_011052559.1|2022960_2023518_-|hypothetical-protein
MRTTSVSSSLALALAGVLAVSGCSKKADDDSVSKDPTSGAATEAMPGPAATPPASDQAAQGSATGAASTDGGAATGSAVTVSSVAVGTQAAADKTVTPATSVGSKDTIIVSVKTDGSASNVAVSAKLTYQDGQVAGEQNATLNTTGAETTNLSFSKPDGWPAGTYTAQVMVDGKPAGTPQTIIVK
>NZ_CP020889.1|WP_005927086.1|2023622_2023916_-|LysM-peptidoglycan-binding-domain-containing-protein
MSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQAGDSLSSIAKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPPKS
>NZ_CP020889.1|WP_003484546.1|2024018_2024834_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MNTPEDSTLGREVAYPSGYDPSLLFPIPRAAGRQAIGLTGDLPFIGRDRWHAYELSWLDAQGKPCVATATLHVPCDSPSLIESKSLKLYLNSLNATRFNSAEAVRTRIATDLSTRAGADVAVEFGLPPIDAVGEGESIDALDLSIDDYGPPNAAYLCAHAQPVVEEVLTSALLKSNCPVTGQPDWASVTLRYRGAPIDREGLLRYLVSFRDHAEFHEQCVERIFNDVLTQCAPQWLVVEARYTRRGGLDINPLRSSASVPTPLSIFRDLRQ
>NZ_CP020889.1|WP_015463674.1|2024992_2026300_-|amidohydrolase
MRPSRLLTSALLLALPMLATAQTAQRPDVQAAAAPLQAKVVQWRRDFHQHPELSNREERTAATVAAQLRKLGLKPRTGIAHHGVVAIIKGAKPGPKIALRADMDALPVTEQTGLPFASKATAEYRGEQVGVMHACGHDAHTAILLGVAEALVGMREQLPGEVMLIFQPSEEGAPGNEEGGASLMLKEGLFADFTPQAVFGLHVFSSVQAGKIAVRSGPLMAASDRFAIKMIGRQTHGSAPWNGIDPIVASADMIGAAQTVISRRANLSKQPAVLSFGAIKGGIRYNIIPDDVEMVGTIRTFDEGMRQQIFADLKNVAEHTAAAHGAKVQAQVPDQPGNPATVNDPALTARMLPSLQAVVGADNVYEPPLQMGAEDFSFYAQQVPSMFFFVGSTAKGIDPATAPSNHSPQFLLDESSLDVGLRALLQVSLDYLQQG
>NZ_CP020889.1|WP_087978981.1|2026558_2027803_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRFWKVTLLVVAVLVVVFVAVRMMGGGNHGKRAGAPDGNDPDNSGPVPVTVVAATTQDVPVYASALGTVTALNTVTVSPQVGGQLMSLNFKEGQEVKKGDLLAQIDPRTLQASYDQALAAKRQNQALLATSRVNYQRSNDPAYKQYVSRTDLDTQRNQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGIAGIRGVDVGNIVTSSSTIVTLTQIRPIYVSFNLPERELQAVRTGQTAAPLAVAALDRGDAHVISSDGKLDVIDNRISADSGTFGARAIFNNTDNALWPGQFVNVRLQLRTIAGGTVVPSQSVQRGPDDDYVYVVGSDNTAQMRTVVQGVEVDDSHVQITKGLKPGERVVTEGQFRLKPGSKVSALKPGETPPEPTEAELKAAKDKQSRGGGPGGRRGGGPR
>NZ_CP020889.1|WP_075150087.1|2027839_2031145_+|MMPL-family-transporter
MRRRCMRRLRLTSSARTPPVGFSTIFIRRPIATSLLMAGVLLLGILGYRQLPVSALPEIDAPSLVVTTQYPGANATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQATLPSSLPYQPVYNRVNPADAAILTLKLTSDSLPLREVNRYADAILAQRLSQVPGVGLVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTNDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNLWTRTVGAYERSLDWVLAHQPLTLAVAIGAVALTVVLYVAIPKGLLPEQDTGLITGVVQADQNVAFPQMEQRTQAVAAALRKDPAVTGVAAFIGAGTMNPTLNQGQLSIVLKTRGDREGLDEVLPRLQNAVAGIPGVALFLKPVQDVTLDTRVAATEYQYSISDVDSSELATWAGRMTEAMRKLPELADVDNNLANQGRALELSIDRDKASMLGVPMQTIDDTLYDSFGQRQISTIFTELNQYRVVLEVAPEFRTSTALMNQLAVASNGSGALTGTNATSFGQVTSSNSSTATGVGAQNTGIVVGAGSIIPLAALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQFVGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIDARREGATAHDAIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMERAGERLRAWRARRAARRDGLNPAPTSERPA
>NZ_CP020889.1|WP_015472886.1|2031325_2034466_+|efflux-RND-transporter-permease-subunit
MNISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIFVHATQSGADASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINASQSDLPSGLGTPMYSKANPNDDPVIAIALTSETQSADELYNVADSLLAQRLRQITGISSVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISNDSVSKAADFAQLAISTQSNGRIVRLGDVATVDDGQQDAYQAAWFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPETPDRFGAWLDRMHERMLRAYTVALDFSLRHALLLSLTPLLLIAATIFLGSAVKKGSFPAQDTGLIWGRANSSATVSFADMVSRQRRITDMLMADPAVKTVGARLGSGRQGSSASFNIELKKRDEGRRDTTAEVVARLSAKADRYPDLDLRLRAIQDLPSDGGGGTSQGAQYRVSLQGNDLAQLQEWLPKLQAALKKNPHLRDVGTDVDTAGLRQNIVIDRAKAARLGISVGAIDGALYGAFGQRSISTIYSDLNQYSVVVNALPSQTATPKALDQIFVPNRAGQMVPITAVATQAPGLAPPQIIHENQYTTMELSYNLAPGVSTGEADLIIKSTVEGLRMPDGIRLSGDDSFNVQLSPNSMGILLLAAVLTVYIVLGMLYESLIHPVTILSTLPAAGVGALLALFITNTELSVISMIALVLLIGIVKKNAIMMIDFALVAQRVHGMDARAAAREASIVRFRPIMMTTMVAILAAVPLAVGLGEGSELRRPLGIAMIGGLVFSQSLTLLSTPALYVIFSCLSERWKARRARARARRAERAAARRPAAQAH
>NZ_CP020889.1|WP_011052564.1|2034648_2036016_-|VOC-family-protein
MRDTAFISPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALREQAQQILQQRQIFTVGALQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQMQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA
>NZ_CP020889.1|WP_099521980.1|2036025_2036289_+|hypothetical-protein
MGRCRPNASGTAFSPTAPCVDQRHGSIAGDALVRRRPRHAGKCIARRHSDRVRARPAPPLRPLRSPGAPLPGAAHDRRADAAAMRPG
>NZ_CP020889.1|WP_075150205.1|2036179_2036827_-|hypothetical-protein
MRRPPDSTARMRHHRCMPVSRSSVLRSVSLLVASLWPALGAAQAPPASATAAATEEAAPAVTPGTGDAWVDQHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHGWHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVTRLSVAPDNLYMRALRHAIVASYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAAQAGL

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Crispr_ID: NZ_CP020889_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020889_3

2216261-2216559

Orphan

Consensus_repeat	Method
TGGAAACGGTCAACGGC	PILER-CR
TGGAAACGGTCAATGGCAGCATC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP020889_3

>merge|NZ_CP020889|3|2216261-2216559|PILER-CR,CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGCTGGAAACGGTCAATGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP020889|3|3|2216261-2216442|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGC

>NZ_CP020889|3|3|2216261-2216559|CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGAACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020889.1\|WP_015462682.1\|2219809_2220943_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020889.1\|WP_011050027.1\|2209274_2210615_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP020889.1\|WP_015471496.1\|2223898_2224681_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP020889.1\|WP_011052849.1\|2228291_2228825_-\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|336958
NZ_CP020889.1\|WP_011050031.1\|2219073_2219517_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP020889.1\|WP_005922831.1\|2226322_2226835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_005912472.1\|2216957_2218754_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP020889.1\|WP_040145186.1\|2227103_2227361_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_015471496.1\|2205533_2206316_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP020889.1\|WP_011050028.1\|2211954_2212947_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP020889.1\|WP_015471495.1\|2206315_2207326_-\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP020889.1\|WP_011050033.1\|2221579_2222632_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020889.1\|WP_005927226.1\|2213112_2214639_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP020889.1\|WP_011052850.1\|2227879_2228233_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|377727
NZ_CP020889.1\|WP_003482171.1\|2211634_2211955_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP020889.1\|WP_005927217.1\|2208303_2209005_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP020889.1\|WP_015471495.1\|2222888_2223899_+\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP020889.1\|WP_005912470.1\|2214743_2215979_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP020889.1\|WP_003482177.1\|2210833_2211526_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP020889.1\|WP_005912457.1\|2204172_2204763_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP020889.1\|WP_015462682.1\|2219809_2220943_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	2.78746e-58
NZ_CP020889.1\|WP_011050027.1\|2209274_2210615_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	9.91943e-135
NZ_CP020889.1\|WP_015471496.1\|2223898_2224681_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP020889.1\|WP_011052849.1\|2228291_2228825_-\|lipocalin-family-protein	gnl\|CDD\|336958	pfam08212, Lipocalin_2, Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.	1.39452e-53
NZ_CP020889.1\|WP_011050031.1\|2219073_2219517_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	6.45133e-05
NZ_CP020889.1\|WP_005912472.1\|2216957_2218754_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.52694e-122
NZ_CP020889.1\|WP_015471496.1\|2205533_2206316_-\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP020889.1\|WP_011050028.1\|2211954_2212947_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	7.84237e-145
NZ_CP020889.1\|WP_015471495.1\|2206315_2207326_-\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP020889.1\|WP_011050033.1\|2221579_2222632_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	2.75626e-59
NZ_CP020889.1\|WP_005927226.1\|2213112_2214639_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	5.94443e-128
NZ_CP020889.1\|WP_011052850.1\|2227879_2228233_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	2.68467e-22
NZ_CP020889.1\|WP_003482171.1\|2211634_2211955_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.29038e-51
NZ_CP020889.1\|WP_005927217.1\|2208303_2209005_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.29017e-07
NZ_CP020889.1\|WP_015471495.1\|2222888_2223899_+\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP020889.1\|WP_005912470.1\|2214743_2215979_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.19413e-91
NZ_CP020889.1\|WP_003482177.1\|2210833_2211526_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP020889.1\|WP_005912457.1\|2204172_2204763_+\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.00183523

>NZ_CP020889.1|WP_005912470.1|2214743_2215979_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSTLQQERAQLQRGLQNQRAQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVVANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP020889.1|WP_005927226.1|2213112_2214639_-|PDZ-domain-containing-protein
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKMPKPFDVTLQRETIRVASVRSKLLEPGFGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRARIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLTPEPQPGDADVPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAANKTGAEPKPAAARPATTDKPRSAEPAGKAKPATTPPAPAEPVQPTTPTDKPAEPVN
>NZ_CP020889.1|WP_011050028.1|2211954_2212947_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRIVVPDDYQGAVAQLPCLQQLQDHQVQVLGALDAELDARAACLADADALVLIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLTDYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRVAGFGRAFGMQVVVWGGEASCAQAARDGFAVAGSREDLFERSDVLSLHRRLTAQTRHDVTAQDLARMRADALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDPLLRHARVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRV
>NZ_CP020889.1|WP_003482171.1|2211634_2211955_+|DUF1820-family-protein
MSKSLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP020889.1|WP_003482177.1|2210833_2211526_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP020889.1|WP_011050027.1|2209274_2210615_-|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSAKGLGRAFAGSGSAPDDASIIATNPAGMRQLDGRLFQADVSAISFSAKFQPDTAAYANGAPVSGGNGGDAGMIAPVPAMYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGSADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVTLRGGLAYDQTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP020889.1|WP_005927217.1|2208303_2209005_-|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEDCVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYLRQYPQALISPLMLQVTTADGRPHRLVAEDIVQMSDQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLNDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP020889.1|WP_015471495.1|2206315_2207326_-|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP020889.1|WP_015471496.1|2205533_2206316_-|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP020889.1|WP_005912457.1|2204172_2204763_+|hypothetical-protein
MRTFRIRGRRLGLRFRETVLLAGTLACSVLFVATQRQIGLLCYAVAPILLLAFFVLQADLVWRGHKTAGAAFIMAVAAWLTFSVLATYAFSGLVHTHNFLGTWLKALLGAGFFAVLFSLSVLLARKRSVSLYWYLAGSLAVVIAVAAVHPENSGDITVNCERGSCAAGIIAFWPGAFQAADGKRPISVVLPHSGGD
>NZ_CP020889.1|WP_005912472.1|2216957_2218754_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTDSAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLTQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGERGDNIYNGAVDNATGVAGILEIADAFAHQDPKPTRSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQSGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADATSRATQTNMAKPPR
>NZ_CP020889.1|WP_011050031.1|2219073_2219517_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDLKFEHGVWTADARSGDGKDVDVHIDPVTGRVYGDQTTSKLSEADVRASLSTGGYADVHDLKFNDGLWKADAKRNGQKVELHVDPEDGHVVSVEND
>NZ_CP020889.1|WP_015462682.1|2219809_2220943_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRALLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEFASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTASGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALAFNSDNAVMFGLMNEPNNISASDWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLAYMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQATLATRAPVAAAAARTSAASTSATSTSVARTAR
>NZ_CP020889.1|WP_011050033.1|2221579_2222632_-|glycoside-hydrolase-family-5-protein
MKSLTTHTRRLRCRALSFLLLAAMPLAQAQSATGLKYAGVNLSGAEIKSSQKPGVLNIDYRYPAADEYAYFAGKHMNTVRLPILWERLQPRAGGELDPAQLALIRQAVANAKAAKMYVIVDVHNYAKYYGHTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWATAAQASIDTIRKTGATNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATVGVERLRSFTEWLRLNKKRGFLAEFGTGNTVTCNLALNGMLGYMESNSDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP020889.1|WP_015471495.1|2222888_2223899_+|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP020889.1|WP_015471496.1|2223898_2224681_+|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP020889.1|WP_005922831.1|2226322_2226835_-|hypothetical-protein
MPTHAELTPQVLMDRFFSLIRDVKIFDELSPLVLERYLEVPFTKNAGENSGFYMLDQPSPYSKYATTYNFDEKFSQYSNVTLELISPSSVPPASLPPCELIFEEYDSALKDAGFEPQLGIYNEFGWVISFQYLRGNIRAQIIPWHPVSLDPQRKSRENCVRSISLHKYEE
>NZ_CP020889.1|WP_040145186.1|2227103_2227361_-|hypothetical-protein
MEQSLFGYYLLPEDAQLRLLQTRDHLRFLAALARPRCVSNTLGNNGPPIQMDALAFCFDMLAEQLNNVLLQTTVPGDMTERCPPS
>NZ_CP020889.1|WP_011052850.1|2227879_2228233_+|ribonuclease-E-inhibitor-RraB
MQRNLDLYPKDDNGDTLWHIAQQGVDLSTPREIAFSVVFPSKESALEFSVKMLRFEQKVRCCHYPENTAFPMDVTVYPTMLPSYKAISAFEDDLATEAKPLDGLNDGWEFSVDTKDA
>NZ_CP020889.1|WP_011052849.1|2228291_2228825_-|lipocalin-family-protein
MRGGSMLLLLTLAVYGSASGSESRAALPRADSVDVPRFMGDWYVIAHIPTRPERKAYDAVESYALRPDGRIQTTFTFRKGSFQAPLKSMHPIGQVAKQGNGALWRMQFFWPFKAEYVIAWLDAGYTQTIVARSKRDYVWYMARTPQVSDTDYQQAVQRIAAMGYDVSQLRRVPQSAR

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Crispr_ID: NZ_CP020889_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020889_4

2943125-2943309

Orphan

Consensus_repeat	Method
TGCTCGGCCGAAGGGCGCACCTGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP020889_4

>merge|NZ_CP020889|4|2943125-2943309|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCACCGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCACTTGCTCGGCCGAGGGGCGCACCTGCACGGCGGCCAGGGTGTGGATGCCGCTGTTGCGTTCCAGTGTCTGCTGGGCGATCTGGTCGGCGGCCGGGCGAACCTGCAC

>NZ_CP020889|4|4|2943125-2943309|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCAC	CGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCACT
TGCTCGGCCGAGGGGCGCACCTGCAC	GGCGGCCAGGGTGTGGATGCCGCTGTTGCGTTCCAGTGTCTGCTGGGCGATC
TGGTCGGCGGCCGGGCGAACCTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020889.1\|WP_015472628.1\|2950964_2951843_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_015462750.1\|2937767_2939114_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP020889.1\|WP_003488515.1\|2931601_2932114_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP020889.1\|WP_015471496.1\|2946144_2946927_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP020889.1\|WP_011050175.1\|2934563_2936291_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP020889.1\|WP_015471582.1\|2933608_2934205_-\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP020889.1\|WP_011052153.1\|2949262_2950186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP020889.1\|WP_003488348.1\|2942446_2942923_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP020889.1\|WP_015471495.1\|2946926_2947937_-\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP020889.1\|WP_011050178.1\|2939303_2940056_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_003488921.1\|2943797_2944118_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP020889.1\|WP_011052149.1\|2953155_2953701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_003488352.1\|2940158_2940776_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_003488517.1\|2932129_2933155_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP020889.1\|WP_015463536.1\|2952574_2953054_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP020889.1\|WP_005928629.1\|2940868_2942098_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP020889.1\|WP_005912222.1\|2944219_2945236_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP020889.1\|WP_011052152.1\|2950281_2950740_+\|chemotaxis-transducer	unknown	unknown	gnl\|CDD\|185001
NZ_CP020889.1\|WP_011050176.1\|2936340_2937783_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020889.1\|WP_015472627.1\|2951954_2952179_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020889.1\|WP_015462750.1\|2937767_2939114_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.14519e-174
NZ_CP020889.1\|WP_003488515.1\|2931601_2932114_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	3.40232e-69
NZ_CP020889.1\|WP_015471496.1\|2946144_2946927_-\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP020889.1\|WP_011050175.1\|2934563_2936291_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP020889.1\|WP_015471582.1\|2933608_2934205_-\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.24041e-107
NZ_CP020889.1\|WP_003488348.1\|2942446_2942923_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.47465e-81
NZ_CP020889.1\|WP_015471495.1\|2946926_2947937_-\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP020889.1\|WP_015463536.1\|2952574_2953054_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.28143e-63
NZ_CP020889.1\|WP_003488921.1\|2943797_2944118_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	9.95984e-10
NZ_CP020889.1\|WP_011052153.1\|2949262_2950186_-\|hypothetical-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.68686e-08
NZ_CP020889.1\|WP_003488517.1\|2932129_2933155_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP020889.1\|WP_005928629.1\|2940868_2942098_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.01108e-20
NZ_CP020889.1\|WP_005912222.1\|2944219_2945236_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP020889.1\|WP_011052152.1\|2950281_2950740_+\|chemotaxis-transducer	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.2432e-15
NZ_CP020889.1\|WP_011050176.1\|2936340_2937783_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.80619e-32

>NZ_CP020889.1|WP_003488348.1|2942446_2942923_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP020889.1|WP_005928629.1|2940868_2942098_+|MFS-transporter
MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP020889.1|WP_003488352.1|2940158_2940776_+|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALKPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPPGKPPKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPHGPAHKPKPKPKH
>NZ_CP020889.1|WP_011050178.1|2939303_2940056_+|hypothetical-protein
MLRQTVLAIALACTIGAAAAQVAAPPPPPAPNGPIGGPPAPPTPVAATPVSVSGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIQRLVYGPAGEINGALVSDGTVVRMPPHLALQFADLLRVGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPVAPVPPAGR
>NZ_CP020889.1|WP_015462750.1|2937767_2939114_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGIAVLRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRAEAQAAATDALSAPVEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFAAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAARAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNGASALTGTLPEAVAQLEKRMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP020889.1|WP_011050176.1|2936340_2937783_+|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACVGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGAGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNAAQQSVTTKQAAQYRRDGRREVLLISACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALAQTRRLAAELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARGDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLQLETVVVQDWLATLLEHGPLPPGTSPPRVLLPAAPLRWTLDPQQLGRAVHNLLRNAAQHADPGSEVTLQAAAVEGMLQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRAS
>NZ_CP020889.1|WP_011050175.1|2934563_2936291_+|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKRTLARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGQLAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVEMVTNPAQLPEVLHRAMRTAILQQGVTVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVRQLVELLQQSKAVTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGQPLHPQFVTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLHLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQAFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP020889.1|WP_015471582.1|2933608_2934205_-|Ax21-family-protein
MKTSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAIAPNFHVFGDYSKQNADDNNNVFENTDSDFQQWGVGVGFNHEIATSTDFVARVAYRKLDLDTPNINFDGYSVEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNQNWGINGDIRMDGDGNKECSVGPRFSW
>NZ_CP020889.1|WP_003488517.1|2932129_2933155_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDLTHKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPDSLRATTDLQAAVADATWILVVVPSHAFTETIRLIAPLRPPGAGVAWATKGFEPGSGRFLHEVARDILGPSVPLAVVTGPSFAKEVTLGLPTAITVHGDDAAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAVIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLDEAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP020889.1|WP_003488515.1|2931601_2932114_+|protein-export-chaperone-SecB
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA
>NZ_CP020889.1|WP_003488921.1|2943797_2944118_+|DUF4156-domain-containing-protein
MRVLMLSVLVATSTAACTWVPIEQSGKSVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP020889.1|WP_005912222.1|2944219_2945236_+|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP020889.1|WP_015471496.1|2946144_2946927_-|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP020889.1|WP_015471495.1|2946926_2947937_-|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP020889.1|WP_011052153.1|2949262_2950186_-|hypothetical-protein
MTSQLQTQIPFAGLEDTARELLDRLADLTPLKTWVFAEVKNDYWIIRACVDDSFGLEAGQFLSWPDSVCRSMMVMGGPQFAPDLRRYEHLAQAPVATRLGIASYLGVPIRIPGQVEGMLCGLNNRIIEDRVEPLLPLVETFGRVLAGSWAQHLASAGPTSVDTVGAPEEPTLNRLYDPATFRELLQSAADHRHSDEQGGILLFDIDLTSSGNQTGSDQDASTAIGLLRQATRPQDSLACLAEGEFAVFLPGSSEAGLVSIARRIQSSLSGRGLNAKWGASWFRQMQELNNVHQLIKIGPLRGNTSHP
>NZ_CP020889.1|WP_011052152.1|2950281_2950740_+|chemotaxis-transducer
MTEAGHGAKLVEIAGRTMQELLSSVKEFSQIVGTIAAASSEQNVGIEQISQIDGATQQNATLVDTMGSSARSLENQASLLVQSVAERGRCAPAETALALACQVLFLGPAGALCTAVAGSCNAVTGPASSEVKNLVWPGQARSGAPGFRWPRL
>NZ_CP020889.1|WP_015472628.1|2950964_2951843_+|hypothetical-protein
MAHPVATNADLADALAALDARDDAASSRHLERAARQGSIMGRAIRDVLDDGNSRNAYDKPRAFELFVRGGGNLALYEAVSAELAKLYDALRPSTLLDIGAGDGMALVPAIEASGHVPDQIDVVEPNDVLLGKLIASLPLVRGYRMTMENFAEGFDDEDHWDLAQSTFALQSIETKTREQALAALAGHVDRLVIVEFDVPDLTPNSDAYYQSLAHRYERAASEYSEDAALVAGGFLAPMLLGQLRSIAPSNHEQPADAWVAELERAGYRVLSRANLHDYSWSTAFSLTAAPKG
>NZ_CP020889.1|WP_015472627.1|2951954_2952179_+|hypothetical-protein
MDRAELRLHLERLDAAVPALRASSPDRRHFWRAFASMAAAIESKAATSEDAQFVGRRAEEILSWHGLENTDEHV
>NZ_CP020889.1|WP_015463536.1|2952574_2953054_+|DNA-repair-protein-RadC
MKRTQDRAVQYQLQMDEEGILLAAATILEQRLQRQGRIHSPDQAGDYLVARCAHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVVAKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQALSLLDIRVLDHLVIGGQQHVSLASRGWA
>NZ_CP020889.1|WP_011052149.1|2953155_2953701_-|hypothetical-protein
MGVNPLLCPRVYRPTLRHGQLSAALSSCMDSHTMQQLQTRIGRMRKYELVSQEDELGCAAACVASILDIPYQRAKRLLEKEKSGGIDDHPEGFEIDEIANALYKKDVKVVADWNPPAKLPSGTIVCIYSRVRYKSYHYLLKVPGGYMDPWFDLKDGVMEAQLRAELPKGTKLVVALIPSKK

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Crispr_ID: NZ_CP020889_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020889_5

4677165-4677259

Orphan

Consensus_repeat	Method
CTGGCCGAAATGGATGCCGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020889_5

>merge|NZ_CP020889|5|4677165-4677259|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCCGGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTGCTGGCAGAAATGGATGCCGACCC

>NZ_CP020889|5|5|4677165-4677259|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCC	GGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTG
CTGGCAGAAATGGATGCCGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020889.1\|WP_011051223.1\|4670066_4673108_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP020889.1\|WP_011051226.1\|4667359_4668514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_003489696.1\|4675803_4676586_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP020889.1\|WP_015472222.1\|4689906_4690668_+\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP020889.1\|WP_015463128.1\|4680909_4683195_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP020889.1\|WP_011051217.1\|4686874_4689610_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP020889.1\|WP_015463127.1\|4689628_4689910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_005922751.1\|4674827_4675802_+\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP020889.1\|WP_075150003.1\|4666565_4666871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_075150002.1\|4666812_4667181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_015463130.1\|4673554_4673752_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_005931838.1\|4684571_4686749_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP020889.1\|WP_011051225.1\|4668523_4669372_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP020889.1\|WP_005914940.1\|4674080_4674821_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP020889.1\|WP_011051221.1\|4678663_4680670_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP020889.1\|WP_003489692.1\|4677959_4678268_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP020889.1\|WP_040236987.1\|4690681_4693054_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP020889.1\|WP_011051224.1\|4669310_4669829_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020889.1\|WP_002806565.1\|4678264_4678630_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP020889.1\|WP_011051219.1\|4683514_4684048_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020889.1\|WP_011051223.1\|4670066_4673108_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP020889.1\|WP_003489696.1\|4675803_4676586_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.78125e-60
NZ_CP020889.1\|WP_040236987.1\|4690681_4693054_+\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.12643e-102
NZ_CP020889.1\|WP_015472222.1\|4689906_4690668_+\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	9.52129e-19
NZ_CP020889.1\|WP_011051217.1\|4686874_4689610_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.84155e-113
NZ_CP020889.1\|WP_005922751.1\|4674827_4675802_+\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.3622e-146
NZ_CP020889.1\|WP_015463128.1\|4680909_4683195_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	7.92021e-109
NZ_CP020889.1\|WP_011051225.1\|4668523_4669372_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.63046e-48
NZ_CP020889.1\|WP_005914940.1\|4674080_4674821_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	6.78947e-148
NZ_CP020889.1\|WP_011051221.1\|4678663_4680670_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP020889.1\|WP_003489692.1\|4677959_4678268_+\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	3.92342e-10
NZ_CP020889.1\|WP_002806565.1\|4678264_4678630_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.03477e-67
NZ_CP020889.1\|WP_005931838.1\|4684571_4686749_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	8.2722e-111

>NZ_CP020889.1|WP_003489696.1|4675803_4676586_+|ParA-family-protein
MRIWAIANQKGGVGKTTTTLALGRGLAALGHRVLLIDLDPHSSLTRAFGVAIDPPPRGVLDLFGTPPSDLASLAHESSIPGLSYVCAQAALATLERRSANQPGLGLALQNAMTRHAGQHDYILLDCPPTLGLLMINALAACDRVVVPTQAEPLALHGLASMVRTADMVQRSRRRELPVSILPTLFDRRTRAGTETLKEMQATYGPVVWEDAVPVDTRICNAAALTVPAVGGDYQGRGLSAYRRALEWVLADDAMRMEQAA
>NZ_CP020889.1|WP_005922751.1|4674827_4675802_+|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQSLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ
>NZ_CP020889.1|WP_005914940.1|4674080_4674821_+|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPEAMRNMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP020889.1|WP_015463130.1|4673554_4673752_-|hypothetical-protein
MIAASVGGANVPGNWLFGAADILSDSPSRHIPAMAMAAKQRVAGHVLECVNTRMSTPYIAELGCK
>NZ_CP020889.1|WP_011051223.1|4670066_4673108_-|TonB-dependent-receptor
MFASAASTSAAAQQADGTPAPTDQAAVQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNRSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYYGDGNWRGGRLLDGLQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAAAGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFASAWDLTGTPSMTFSPELMQNLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGIKRRDGGIHRNTGNNYWVCPGTDPGDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSEDNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLADSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFHPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQLVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQEFRSHLGDDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP020889.1|WP_011051224.1|4669310_4669829_-|hypothetical-protein
MSQATAPAIDRDDFSTESDFVDSFVGKLSKGRTSFGKVEITKEWDHRAGVVDVLARHRRKTLVAFEAKLNNWKRAFHQAYRSTAYANKSYVIVPAHVAARALRNRDEFELRGVGLCSFDGKSVEVLIEASEQDALLTWLRAQAHEHFDSLKDDERAAKSRSGCRAAVSAMRI
>NZ_CP020889.1|WP_011051225.1|4668523_4669372_-|serine/threonine-protein-kinase
MSAQLNLDLVAEQLCQQCGFEFKGLLGKGAFKSAYLSVHKSYPFALKIAAIAGDANRLVREADALKECSHASVAKLLQAFSYAHGTHHLWVVYEEYLGGGTLEARLKLGALPPAVVRALGVRLAEVLEHLESKRLVHRDIKPANIMFRDDRDPHPVLTDFGIVRMLDQPTLTHAFMQMGPGTPAYAAPEQLTNDKALIDWRTDQFGVAIVLAECLLGHHPFLEPGKTINDAIISVAAKHEMPATNAQRLTAMGFGCITRALKPWPVSRYRRPSDFIKSLTQA
>NZ_CP020889.1|WP_011051226.1|4667359_4668514_-|hypothetical-protein
MASYLQFGHDSWNLLEEADIGAYTGLILSPVNDGPTDVQTRLARLGTLRDRLEVILDPQMYNPAVEKGKMDQWSYFPADFATADHADIGWWTTRTRAIVDEGARLGVDAVCSPALFPRAFTDDYYSLMVEVADATKQYADQHEIQTMLTAVVSLRDLANPTRAMAIASILSRSSCERVYLTFVNEDVPPREPLKDGAGIPTAVHLVRLLSAEMRVHVAFVSHDLILWKLAGATDISTGKFMNLRRFSPGRWQDEEAGGRQVAYWNEGPLLARLREADVALLLRHGWFEGRDMSGNPSEARILEIIRGGTRTAWLKLSWMQYLRWASNMEALWHGNPTLAEASLDTADRNWSEIVDRRKLLFQDRFNNGDHVRAWMNAVRESRIR
>NZ_CP020889.1|WP_075150002.1|4666812_4667181_+|hypothetical-protein
MDGAVDMATPSWNNPRTAANGDGMSGGSKPLRAGGRIPLAGVVLAALPTQASHRLVPAGCRHKKPTGLTEVGTALRGVSTLLGTRLQVHGLACQDTLAGLARLCAPLKQFHTGHASRAPSPD
>NZ_CP020889.1|WP_075150003.1|4666565_4666871_-|hypothetical-protein
MAAVLGLFQEGVAMSTAPSMLASVPVDLLSASAHRPRWDVIEMLRRLAARAVVEQAREHPAHSLSRRFDMLPHTSSRRFARRAVALQQRVAASTIHHREAP
>NZ_CP020889.1|WP_003489692.1|4677959_4678268_+|STAS-domain-containing-protein
MSTVTLGEDLGIETSADLKQKLAGFLTQDGDLVLDAGEVRRIHTASVQLLCAFVQSRRQAGLHTEFDGCNDTFRDAARLLGVTDALGLPASNDNLKSVENAA
>NZ_CP020889.1|WP_002806565.1|4678264_4678630_+|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP020889.1|WP_011051221.1|4678663_4680670_+|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLSLEEGNRDPEIINSVFRAAHSIKGGAATFGFDAVAGLTHVLETLLDELRSNKRQLEPNAVDAMLGSVDVLRALLREAEHGTPADPAAVKAVHTRLNAVLAGEAPAAAAVAKPKEEEPEAWHIGFTPAPSLFMSGNDPLRIIRELEHLGPLQIAARLERMPGFENIDPLEAYLAWDLGLIGKIPRSKIEDTFAWVVDDCELDIRPMAVPGPPPSLAVDAPGAAPVAAVAAAPSAVAEPAAAATPAKAAAAEAESSIRVSVDKVDALINLVGELVITQAMLKQVSTGLDPAHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGESTELDKGLIEKIADPLVHLVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKAAERGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGEVQLESNAGSGTRVLIRLPLTLAILDGMTVSVAGETLILPLSYVLEALQPAPEDVRAMAGDGRVLRVRGEYLPILSLTNYYGFGGQQSSKESLVVVVEGDGQKIALEVDELLGQQQVVVKNIENNYRRIPGVSGATILGDGRVSLIVDIGGLVRSLKVPQAA
>NZ_CP020889.1|WP_015463128.1|4680909_4683195_+|methyl-accepting-chemotaxis-protein
MNWFRNLAVARKLAVAFSFTALITLSLGGFALARMQSSAHLLREIGTVWAPAVQQLSEMRALLGEFRTYELAQLAHADDPKAVQNYFERMDKARADVATAQDAYAKTTTAGRETELYDEVKLKLSDYYKANAALSAAVRAGDLVTANRVSDEQSRPARRDLFAKLVELTKFNVAHMDSEIAQAEATYRRSVHVMLVAMALFVLLAAFSGWFIARSIAGPLGRATRVASAIAQGKLDNAIHVDSRDEAGQLLHSMEGMQRQLQAVLAAQSEMAKRHDAGQISYRMEHDAFPGDYGTMVRDTNSLVGSHIAVKMKLAQIMSHYAIGDFSQDMDRLPGEKAVLSSTMDTVKANLSAMNGEIKLLAQAAANGDFSVRGDTQRFQYDFQAMVESLNQLMATADANLGSLSKLLQAIAAGDLTERMQGQFNGVFAQMRDDANATTAQLADIVGRIQHATLSINTAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAATVASQGGSVVSQVVTTMSGIEVSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSANAAKEIKHLIDDSVSKVAEGSVLVDRAGKTMADIVASVQRVTDIMGEISAASQEQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVSIFKVQQVAAVAPAAKRPAPLRLAAAKPGATKPTTTKRAPAPAGVAAKATATPRPVAATAGNSESDWQEF
>NZ_CP020889.1|WP_011051219.1|4683514_4684048_+|hypothetical-protein
MHTANSNRSARTVLGCVFTVALLAAGVSLPPSFAAPAAPVSVLLDNVPVTALQSLAVDLAQLRDDQRAQLAARHDAARIDAYDERLGNLHQRIARHAGYFQATAPQGEQARKFALVQQLLGKYLAQHRQANRALHEGDLQYAQALSLGHSGDTRHVLWTELQSLQQSVASANVAQRN
>NZ_CP020889.1|WP_005931838.1|4684571_4686749_+|methyl-accepting-chemotaxis-protein
MTLKTTVAKTLANVPLKRKFFAQTALVALGIIALAVIAARMQYVDLTDTRRDGLKSQIEMAIAVVNGYAERAEKGEIDVETAKKSALHTLSTMRARGGVDYIYVTDQTPTMLMHPTRPDLVGKPLSDVLSPDGKRVFPAFVTAAQAGGGYVDYTWAKPGQKDPVQKTSYAALYKPWGWVIGTGVYLDDTQSQALVFTGIVAIAGGALVLINLLVGWMIGNSILEPVSRALAAIKGVARGDLSVRTAEHGTDEIGQMLKATDEMVHTLERFSAQTKVMVHMHAGDDVTHRMPTDFPGVYGELATGINTMIFEHLDAIVDAIGILNEYAQGDLSRNAARLPGTRAVLHEAMDAAKASLLAINTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMEVSDRNLGKLSELLASLAEGDLTARLDGQYHGVFARMRDDANATATQLAGIVGRIQQAASSITGSASEIAAGNNDLSQRTEQQAASLEETAASMEELTSTVKQNAESARQANQLAIGAASVASQGGQVVSQVVDTMSGIQTSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVGKVSEGSLLVDQAGKTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNLTVTQMDESTQQNAALVEEATAAANAMQQQAQQLDEAVSSFRIVAAASNQFGHAGARAPTRVALAAH
>NZ_CP020889.1|WP_011051217.1|4686874_4689610_+|HAMP-domain-containing-protein
MFGTAVIASLCFGLTAAITYWQSSRALSASAQATMQNAARYQAEQIGSDLGQALTTGQSLATTLLVQRANGGISRDSAAAVVHDQLLDHPEWVGMGTLWEPQAFDGKDSAFANATGHDATGRFMTYWGRSDQTLVREPLTDYETPGLGDWNLKPRALLRQTVAEPYDYKIGGKTVLMTTLSTPILQDGKYLGAVTVDVALAALQQRLGALRPMQDGYVELLSPAGVVLASHDTTRIGKQVTDARHRTMLEAIKAGKDALDFTPDADGAVSAYVPLQIGKAQERFALGVVVPYATIMQQAHHLLWTILAVGLGSALVLSVALFALLRRQVVRPLEAAAHVADAIASGKLDNQITVQRQDEVGRLMGAMQRMQSDLRERIERDAQVANENLRIRTALEHSEMEVLLADEQHNAVFITQALHTSFKQGEPAFHAKGQTGFSADAVVGKPMDYVFGNDSEGTARTQRLRQLQSTSTERYRFGPVTLDLTMTPLYAPDGRRSGSMLLWRNISAEVSTQQEVAELVQSALMGDFGQRLALEDKHGFYLEFGRQLNGLLETTSLSLERISSLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQISAAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVAQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVEQGASLVHQAGTTMSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLTEAVAVFRLNHAVKPVLAAPTGTPAVRAVATTKPAPARGKRAATPLRQSVGKSSGTAVNDSQWQDF
>NZ_CP020889.1|WP_015463127.1|4689628_4689910_+|hypothetical-protein
MQAYTSVTVRTQRYLHSTAASGMAHLGALRMPCPSARPTRIKNHAALPLGWMTSIACAPPQQPVQQCMRAVAASTATHASGYSFPQVATQGMP
>NZ_CP020889.1|WP_015472222.1|4689906_4690668_+|transporter
MKPSVIASCFVLLGMMGQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWERDDAVDAYSTPTLLRYGLGQTWELRMETDGWQRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQALRGHGTRPSFRLVAEWELSDSISAGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRSFVEVALPQIANSDDGGTVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFRF
>NZ_CP020889.1|WP_040236987.1|4690681_4693054_+|chemotaxis-protein
MKIMHMLGVLVLVAALALLALGGVGYNGQRGLLDAIAAQVISSDALRNHMQADMMHDALRGDVTAALLAASTRDDKAVAAARTALGEHAGEFRESLAANRKLPLAPALRGELDAVTPALQAYIASADHVVNAAETHADSAAAYADFNDKFGQLQTRMGAISERILALNEASRRQAEQDSHRVMWQQGSAVVLALVCLALAAGWILRSVFGLLGGEPQLAMAAAQHIAEGCLDQPIPVAAKHSRSLMAALARMQRDLRERLERERSIAAENLRIRTALDNASTGMYIADPDLTIIYTNGALQDLLHTYADDIQACAPAFHRTANLVGQPVSLLEVGNAQDAEIYQRLDRQGAAQREVQYRSTCIAQNVSAIRDETGAHLGFVCEWRDRTAEARVEIDVADVVRSAAAGDLSKRIDSAGKQGFFLQLAQQLNALLDANAVSIAEVSRLLSALADGDLSARMQGDFHGVFATMRNDANTTAEQLALVIGRIQQAAGSIHTASSEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAADVASQGGAVVAQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVAEGSQLVHQAGTTMADIVASVQRVTDIMGEIAAASQEQSSGIEQVNLTITQMDEATQQNAALVEEATAAARTMEDQASQLAHAVSRFTLADAPPSQAATPAAKKAAVVAVARASKTSTRAPGARKPAVNAPAATAGNDGQWQDF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP020889.1	4588088-4588118	0	1.0
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP020889.1	4588088-4588121	0	1.0

1. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to position: 4588088-4588118, mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to position: 4588088-4588121, mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	MK512531	Xanthomonas phage Cf2, complete genome	4186-4216	0	1.0
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	MK512531	Xanthomonas phage Cf2, complete genome	4186-4219	0	1.0
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	841349-841379	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	841095-841125	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	741214-741244	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	811280-811310	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	740329-740359	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	742907-742937	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	742896-742926	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	741201-741231	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	741220-741250	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	741198-741228	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	841418-841448	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	841417-841447	6	0.806
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	841402-841432	6	0.806
NZ_CP020889_3	3.5\|2216338\|31\|NZ_CP020889\|CRISPRCasFinder	2216338-2216368	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	6	0.806
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	6	0.824
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	23734-23764	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP023287	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence	95777-95807	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP022264	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence	64029-64059	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	44460-44490	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP018464	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence	149304-149334	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP022265	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence	30912-30942	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP024030	Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence	52195-52225	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP020888	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence	47361-47391	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP013664	Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence	53209-53239	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP024033	Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence	52202-52232	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NC_020797	Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence	52181-52211	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP018734	Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence	2004-2034	7	0.774
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	513842-513872	7	0.774
NZ_CP020889_3	3.5\|2216338\|31\|NZ_CP020889\|CRISPRCasFinder	2216338-2216368	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP020889_3	3.5\|2216338\|31\|NZ_CP020889\|CRISPRCasFinder	2216338-2216368	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	638-668	8	0.742
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	989277-989307	8	0.742
NZ_CP020889_1	1.3\|2019427\|30\|NZ_CP020889\|PILER-CR	2019427-2019456	30	NZ_CP026546	Cupriavidus metallidurans strain Ni-2 plasmid unnamed2	103201-103230	8	0.733
NZ_CP020889_2	2.11\|2022241\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022241-2022274	34	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2311351-2311384	8	0.765
NZ_CP020889_2	2.13\|2022371\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022371-2022404	34	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	22164-22197	8	0.765
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	MH271303	Microbacterium phage MementoMori, complete genome	25878-25911	8	0.765
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	74475-74508	8	0.765
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	73546-73579	8	0.765
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	8	0.765
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	8	0.765
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	8	0.765
NZ_CP020889_3	3.8\|2216506\|31\|NZ_CP020889\|CRISPRCasFinder	2216506-2216536	31	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	380719-380749	8	0.742
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	907251-907284	9	0.735
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	KT221034	Streptomyces phage SF3, complete genome	35711-35744	9	0.735
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	MK937591	Microbacterium phage Cinna, complete genome	26190-26223	9	0.735
NZ_CP020889_3	3.4\|2216284\|31\|NZ_CP020889\|CRISPRCasFinder	2216284-2216314	31	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	114529-114559	9	0.71
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	MG592582	Vibrio phage 1.211.B._10N.222.52.F11, partial genome	14372-14402	10	0.677
NZ_CP020889_1	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	MG592581	Vibrio phage 1.211.A._10N.222.52.F11, partial genome	14372-14402	10	0.677
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	23731-23764	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	44460-44493	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP023287	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence	95774-95807	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP018464	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence	149304-149337	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP022264	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence	64026-64059	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP022265	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence	30912-30945	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP024030	Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence	52195-52228	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP020888	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence	47361-47394	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP013664	Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence	53209-53242	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP024033	Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence	52202-52235	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NC_020797	Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence	52181-52214	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP018734	Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence	2004-2037	10	0.706
NZ_CP020889_2	2.12\|2022306\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022306-2022339	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1512440-1512473	10	0.706
NZ_CP020889_2	2.12\|2022306\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022306-2022339	34	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	660477-660510	10	0.706
NZ_CP020889_2	2.18\|2022699\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2022699-2022732	34	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1028825-1028858	10	0.706
NZ_CP020889_1	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	638-671	11	0.676
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP020889_2	2.3\|2021711\|34\|NZ_CP020889\|PILER-CR,CRISPRCasFinder,CRT	2021711-2021744	34	NZ_KJ599675	Micrococcus sp. A7 plasmid pLMA7, complete sequence	16347-16380	12	0.647
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	12	0.647
NZ_CP020889_3	3.7\|2216449\|34\|NZ_CP020889\|CRISPRCasFinder	2216449-2216482	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	12	0.647

1. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

3. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

4. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

5. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

6. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

7. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

8. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

9. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

10. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

11. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

12. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

13. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

14. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

15. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

16. spacer 3.5|2216338|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * **

17. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .*

18. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

19. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP023287 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

20. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP022264 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

21. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

22. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

23. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP022265 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

24. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP024030 (Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

25. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP020888 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

26. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP013664 (Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

27. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP024033 (Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

28. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NC_020797 (Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

29. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP018734 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

30. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.774

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gcattgggtgccggtgcgcaagccaacaaca	Protospacer
* . * ***************.**** ***.

31. spacer 3.5|2216338|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

32. spacer 3.5|2216338|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

33. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 8, identity: 0.742

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgggggtagatccgccgcctgatccgctcgc	Protospacer
. *    ** ******************.**

34. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tcgagcaatctccgccgcctgatcggctgga	Protospacer
..*  *** *************** *** *

35. spacer 1.3|2019427|30|NZ_CP020889|PILER-CR matches to NZ_CP026546 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

ctcgggtttcgggatgtgcttcagatctgc	CRISPR spacer
gatgaacttcgtgatgtgctccagatctgc	Protospacer
  .*...**** ********.*********

36. spacer 2.11|2022241|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 8, identity: 0.765

tcattgaacccaaggaccacttcgcagggcgact----	CRISPR spacer
tcattgaaccaacggaccacttc----ggcgctttcac	Protospacer
********** * **********    **** .*

37. spacer 2.13|2022371|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 8, identity: 0.765

tgtcgagcgcgcactgctgccgcgatggccggaa	CRISPR spacer
tgcggcctgtgcactgctgccgccatggccagaa	Protospacer
**. *  .*.************* ******.***

38. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
ccacgttcgtcgccgtcacggtcgtctgcccctg	Protospacer
*.. ************* ********** * *

39. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagttcg---tcgccgtcccggtcgtctgacgcgt	CRISPR spacer
---aactcggcatcgccgtcccgatcgcctgacgcgc	Protospacer
   *..***   ***********.***.********.

40. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagttcg---tcgccgtcccggtcgtctgacgcgt	CRISPR spacer
---aactcggcatcgccgtcccgatcgcctgacgcgc	Protospacer
   *..***   ***********.***.********.

41. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

42. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

43. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

44. spacer 3.8|2216506|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

45. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
gggagttcggcgccgtctcggtcgtctccggcca	Protospacer
  ******* *******.*********   **

46. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
tcgagctcgtcgccgtcctggtcgtcgtcctcga	Protospacer
..***.************.*******   * **

47. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
ccacgttcgtcgccgtcaccgtcgtctgcccctg	Protospacer
*.. ************* * ******** * *

48. spacer 3.4|2216284|31|NZ_CP020889|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 9, identity: 0.71

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
cagagcggtgccggtgcgcatacctctgggg	Protospacer
 *** *************** ***   .. *

49. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to MG592582 (Vibrio phage 1.211.B._10N.222.52.F11, partial genome) position: , mismatch: 10, identity: 0.677

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgcatcaagcacagccgcctgatccgccccg	Protospacer
.   ****** * **************..

50. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to MG592581 (Vibrio phage 1.211.A._10N.222.52.F11, partial genome) position: , mismatch: 10, identity: 0.677

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgcatcaagcacagccgcctgatccgccccg	Protospacer
.   ****** * **************..

51. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

52. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

53. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP023287 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

54. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

55. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP022264 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

56. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP022265 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

57. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP024030 (Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

58. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP020888 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

59. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP013664 (Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

60. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP024033 (Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

61. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NC_020797 (Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

62. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP018734 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

63. spacer 2.12|2022306|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.706

ttgaccacatgttctctctgtgggaggaaggcac	CRISPR spacer
cctaccacatgttctcgctgtgggcggactacga	Protospacer
.. ************* ******* ***  .*.

64. spacer 2.12|2022306|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.706

ttgaccacatgttctctctgtgggaggaaggcac	CRISPR spacer
cctaccacatgttctcgctgtgggcggattacga	Protospacer
.. ************* ******* ***  .*.

65. spacer 2.18|2022699|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
gcgagttcggcgccgtctcggtcgtctccggtca	Protospacer
 .******* *******.*********   *.

66. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 11, identity: 0.676

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
tgggggtagatccgccgcctgatccgctcgcgtt	Protospacer
. *    ** ******************.**

67. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * ..

68. spacer 2.3|2021711|34|NZ_CP020889|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ599675 (Micrococcus sp. A7 plasmid pLMA7, complete sequence) position: , mismatch: 12, identity: 0.647

ctctctcacgccgcgcgtgcgagatcctgcgtgc	CRISPR spacer
tcgagctacgccgcgcgaacgagatcctgcgcaa	Protospacer
..   ..********** .************..

69. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

70. spacer 3.7|2216449|34|NZ_CP020889|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

879725 : 910976

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471495.1\|879725_880736_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|880735_881518_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_087978966.1\|881773_882634_+	replication protein	NA	NA	NA	NA
WP_040237366.1\|883359_884127_+	ParA family protein	E5FFJ3	Burkholderia_phage	3.7e-05	28.6
WP_011052997.1\|884140_885172_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	5.4e-07	27.8
WP_011052996.1\|885223_885553_+	partition gene repressor	NA	NA	NA	NA
WP_015462622.1\|885556_885793_+	Wgr family protein	NA	NA	NA	NA
WP_087947478.1\|885907_886994_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-43	37.2
WP_015472952.1\|887099_887474_+	hypothetical protein	NA	NA	NA	NA
WP_040237442.1\|887687_887984_+	hypothetical protein	NA	NA	NA	NA
WP_015471496.1\|888101_888884_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|888883_889894_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_087978967.1\|890827_894517_-	Avirulence protein AvrBs3	NA	NA	NA	NA
WP_045123794.1\|894729_894954_+	hypothetical protein	NA	NA	NA	NA
WP_015463823.1\|895273_895810_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_011052947.1\|895799_896012_-	hypothetical protein	NA	NA	NA	NA
WP_125459571.1\|896008_896260_-	hypothetical protein	NA	NA	NA	NA
WP_015463824.1\|896282_896615_-	plasmid stable inheritance protein K	NA	NA	NA	NA
WP_011052949.1\|896614_896872_-	antitoxin	NA	NA	NA	NA
WP_011052950.1\|897077_897680_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.1e-39	48.6
WP_015472939.1\|898134_901095_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_078514874.1\|904948_905500_+	type III effector	NA	NA	NA	NA
WP_005934416.1\|905620_905821_-\|transposase	transposase	NA	NA	NA	NA
WP_003491216.1\|906201_907125_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.8e-39	51.4
WP_003491212.1\|907337_907577_+	hypothetical protein	NA	NA	NA	NA
WP_003491210.1\|907576_907996_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_011345576.1\|908000_910976_+\|transposase	Tn3-like element ISXc4 family transposase	Q1MVP5	Enterobacteria_phage	4.7e-253	47.1

DBSCAN-SWA_2

921549 : 952533

Escherichia_phage(100.0%)

tRNA,transposase,integrase,protease

attL 929912:929927|attR 948852:948867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471495.1\|921549_922560_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|922559_923342_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_011052155.1\|923765_924134_+	response regulator	NA	NA	NA	NA
WP_040107790.1\|924483_924768_-	hypothetical protein	NA	NA	NA	NA
WP_011052157.1\|925130_925526_-	hypothetical protein	NA	NA	NA	NA
WP_015463540.1\|925619_925895_+	hypothetical protein	NA	NA	NA	NA
WP_011052159.1\|926432_926876_-	BLUF domain-containing protein	NA	NA	NA	NA
WP_075150057.1\|927119_927371_-	hypothetical protein	NA	NA	NA	NA
WP_011052160.1\|927582_929178_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_015471495.1\|929750_930761_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
929912:929927	attL	NA	NA	NA	NA
WP_015471496.1\|930760_931543_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_011052161.1\|931842_932310_-	hypothetical protein	NA	NA	NA	NA
WP_011052162.1\|932306_932765_-	hypothetical protein	NA	NA	NA	NA
WP_087978970.1\|933067_934516_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011052165.1\|934698_935628_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_040148111.1\|935624_936209_-	hypothetical protein	NA	NA	NA	NA
WP_011052167.1\|936438_936777_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011052168.1\|936852_937650_+	hypothetical protein	NA	NA	NA	NA
WP_011052169.1\|937696_938011_+	hypothetical protein	NA	NA	NA	NA
WP_075150192.1\|938028_938388_+	hypothetical protein	NA	NA	NA	NA
WP_052455473.1\|938458_939724_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_058958721.1\|940704_941256_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_076605055.1\|941252_941579_+	hypothetical protein	NA	NA	NA	NA
WP_015463548.1\|941575_941914_+	hypothetical protein	NA	NA	NA	NA
WP_015471496.1\|942627_943410_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|943409_944420_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_058958722.1\|944493_945513_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_125459518.1\|945924_946170_+	hypothetical protein	NA	NA	NA	NA
WP_011052176.1\|946154_946670_-	hypothetical protein	NA	NA	NA	NA
WP_015463549.1\|946666_948232_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011052178.1\|948491_950276_-	autotransporter domain-containing esterase	NA	NA	NA	NA
948852:948867	attR	NA	NA	NA	NA
WP_003487182.1\|950464_950665_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_003487184.1\|950714_951509_+	thiazole synthase	NA	NA	NA	NA
WP_015471691.1\|951747_952533_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA

DBSCAN-SWA_3

1729348 : 1737386

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913455.1\|1729348_1730695_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1
WP_011052370.1\|1730742_1732146_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.5e-48	30.0
WP_011052371.1\|1732423_1733590_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	8.0e-116	57.8
WP_005929612.1\|1733929_1734829_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-26	36.3
WP_011052372.1\|1734825_1735383_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	48.1
WP_005929617.1\|1735379_1736267_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.5e-95	57.8
WP_011052374.1\|1736330_1737386_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-83	47.7

DBSCAN-SWA_4

2942446 : 3057210

117

Stenotrophomonas_phage(41.51%)

plate,holin,integrase,capsid,transposase,terminase,tRNA,tail,head,portal

attL 2955086:2955145|attR 3051461:3053476

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003488348.1\|2942446_2942923_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_011050180.1\|2942949_2943411_-	hypothetical protein	NA	NA	NA	NA
WP_003488921.1\|2943797_2944118_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_005912222.1\|2944219_2945236_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA
WP_015471496.1\|2946144_2946927_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|2946926_2947937_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_011052153.1\|2949262_2950186_-	hypothetical protein	NA	NA	NA	NA
WP_011052152.1\|2950281_2950740_+	chemotaxis transducer	NA	NA	NA	NA
WP_015472628.1\|2950964_2951843_+	hypothetical protein	NA	NA	NA	NA
WP_015472627.1\|2951954_2952179_+	hypothetical protein	NA	NA	NA	NA
WP_015463536.1\|2952574_2953054_+	DNA repair protein RadC	NA	NA	NA	NA
WP_011052149.1\|2953155_2953701_-	hypothetical protein	NA	NA	NA	NA
WP_011052148.1\|2953716_2954358_+	DUF1629 domain-containing protein	NA	NA	NA	NA
2955086:2955145	attL	NA	NA	NA	NA
WP_015471496.1\|2955222_2956005_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|2956004_2957015_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_058958719.1\|2957174_2958998_+	hypothetical protein	NA	NA	NA	NA
WP_125460661.1\|2958906_2960544_-	hypothetical protein	NA	NA	NA	NA
WP_011052145.1\|2961489_2962194_+	hypothetical protein	NA	NA	NA	NA
WP_015463534.1\|2962746_2962980_+	hypothetical protein	NA	NA	NA	NA
WP_011052143.1\|2963014_2963470_-	hypothetical protein	NA	NA	NA	NA
WP_015463533.1\|2963549_2963876_-	hypothetical protein	NA	NA	NA	NA
WP_058958700.1\|2964132_2965725_+	plasmid mobilization protein	NA	NA	NA	NA
WP_015463532.1\|2965771_2966134_-	hypothetical protein	NA	NA	NA	NA
WP_015463531.1\|2967033_2967693_+	thermonuclease family protein	NA	NA	NA	NA
WP_003490667.1\|2967803_2968196_+	hypothetical protein	NA	NA	NA	NA
WP_003490669.1\|2968286_2968679_+	H-NS histone family protein	NA	NA	NA	NA
WP_011052137.1\|2968727_2969267_+	hypothetical protein	NA	NA	NA	NA
WP_011052136.1\|2969308_2971441_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_011052133.1\|2973000_2973477_+	hypothetical protein	NA	NA	NA	NA
WP_003490678.1\|2973502_2974180_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	7.4e-05	27.4
WP_011052132.1\|2974349_2975507_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_087943921.1\|2975721_2976866_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_075150055.1\|2976879_2977245_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_108722298.1\|2977879_2982412_-	RHS repeat protein	NA	NA	NA	NA
WP_011052129.1\|2982626_2983235_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_003491180.1\|2983248_2984112_-	prepilin peptidase	NA	NA	NA	NA
WP_040107659.1\|2984118_2985375_-	type II secretion system F family protein	NA	NA	NA	NA
WP_015471735.1\|2985731_2986172_+	pilin	NA	NA	NA	NA
WP_015463526.1\|2986281_2986737_+	pilin	NA	NA	NA	NA
WP_041471193.1\|2986800_2988537_+	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA
WP_005915819.1\|2989030_2989150_+	hypothetical protein	NA	NA	NA	NA
WP_005930970.1\|2989653_2991048_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_003488599.1\|2991372_2992986_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005915812.1\|2993217_2994387_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_005921370.1\|2994411_2995287_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_011052123.1\|2995373_2995889_+	hypothetical protein	NA	NA	NA	NA
WP_011052122.1\|2995843_2996959_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_015463521.1\|2997186_2997477_-	hypothetical protein	NA	NA	NA	NA
WP_011052120.1\|2997650_2998382_+	hypothetical protein	NA	NA	NA	NA
WP_011052119.1\|2998801_2999692_-	hypothetical protein	A0A1X9IAR5	Xanthomonas_phage	3.3e-05	26.6
WP_015471496.1\|3000344_3001127_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|3001126_3002137_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_040107580.1\|3003787_3004339_-	hypothetical protein	NA	NA	NA	NA
WP_011050683.1\|3005011_3005461_-	lysozyme	B6SCY8	Bacteriophage	6.5e-26	46.7
WP_011050684.1\|3005723_3007304_-\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	6.2e-172	55.1
WP_015462922.1\|3007303_3007549_-	hypothetical protein	M1IPP2	Pelagibacter_phage	3.5e-05	39.0
WP_011050686.1\|3007545_3007818_-	hypothetical protein	NA	NA	NA	NA
WP_080766922.1\|3007825_3008314_-	hypothetical protein	NA	NA	NA	NA
WP_015471495.1\|3008370_3009381_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|3009380_3010163_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015462923.1\|3010308_3012333_-	hypothetical protein	A0A166Y926	Gordonia_phage	3.8e-12	37.9
WP_087943921.1\|3013277_3014421_+\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_015471747.1\|3015538_3016504_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	7.1e-94	54.5
WP_041471194.1\|3016728_3016950_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	5.7e-15	57.7
WP_040237384.1\|3016946_3017156_-	hypothetical protein	NA	NA	NA	NA
WP_080633664.1\|3017152_3017356_-	hypothetical protein	NA	NA	NA	NA
WP_015471749.1\|3017421_3017646_-	hypothetical protein	NA	NA	NA	NA
WP_015471750.1\|3017642_3017915_-	hypothetical protein	NA	NA	NA	NA
WP_015471751.1\|3017907_3018090_-	hypothetical protein	NA	NA	NA	NA
WP_015471752.1\|3018082_3018457_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	2.4e-18	46.1
WP_015471753.1\|3018585_3018858_-	hypothetical protein	NA	NA	NA	NA
WP_015471754.1\|3018857_3019130_-	hypothetical protein	NA	NA	NA	NA
WP_015471755.1\|3019141_3019360_-	hypothetical protein	NA	NA	NA	NA
WP_080633707.1\|3019683_3022356_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.4
WP_008572770.1\|3022389_3022602_-	hypothetical protein	NA	NA	NA	NA
WP_040237497.1\|3022598_3022850_-	hypothetical protein	NA	NA	NA	NA
WP_015471495.1\|3022930_3023941_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|3023940_3024723_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_008572766.1\|3024930_3025251_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_008572763.1\|3025253_3025511_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	6.6e-07	44.6
WP_040237454.1\|3025581_3026019_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	6.4e-10	34.0
WP_150130646.1\|3026504_3027494_+	hypothetical protein	NA	NA	NA	NA
WP_015471761.1\|3027566_3028556_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.7e-93	54.8
WP_015471762.1\|3028552_3028954_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	2.1e-39	63.6
WP_015471763.1\|3028966_3031837_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	1.6e-186	46.6
WP_005922203.1\|3031866_3031980_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_008572745.1\|3031988_3032291_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
WP_015471764.1\|3032336_3032846_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	8.9e-72	78.7
WP_015471765.1\|3032875_3034042_-\|tail	phage tail sheath protein FI	E5FFG9	Burkholderia_phage	2.9e-134	63.9
WP_015471766.1\|3034053_3034413_-\|plate	phage baseplate assembly protein W	V9IQW0	Stenotrophomonas_phage	5.6e-36	64.4
WP_015471768.1\|3035115_3035790_-	hypothetical protein	NA	NA	NA	NA
WP_040237406.1\|3035791_3036085_-	hypothetical protein	NA	NA	NA	NA
WP_015471770.1\|3036162_3037962_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	4.3e-84	39.2
WP_015471771.1\|3037974_3038520_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	4.9e-52	56.5
WP_015471772.1\|3038512_3039403_-\|plate	phage-related baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	8.0e-84	53.0
WP_015471773.1\|3039502_3039880_-	response regulator	NA	NA	NA	NA
WP_108723646.1\|3039956_3041246_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_015471775.1\|3041262_3041646_-	response regulator	NA	NA	NA	NA
WP_015471776.1\|3041769_3042219_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	2.4e-36	55.4
WP_015471777.1\|3042206_3042626_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.5e-40	65.2
WP_015471778.1\|3042622_3043111_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.3e-27	52.9
WP_080633665.1\|3043110_3043752_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	5.1e-48	60.9
WP_015471780.1\|3043748_3044024_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.3e-21	59.8
WP_005917737.1\|3044016_3044373_-	membrane protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
WP_005917735.1\|3044377_3044587_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_015472834.1\|3044586_3045054_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.8e-31	49.7
WP_015472833.1\|3045152_3045872_-\|terminase	phage-related terminase	Q9ZXM2	Pseudomonas_virus	5.3e-70	63.6
WP_015472832.1\|3045875_3046889_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	1.2e-136	70.7
WP_015472831.1\|3046935_3047778_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.4e-66	52.7
WP_087978996.1\|3047899_3049684_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	2.7e-272	77.0
WP_015471783.1\|3049683_3050697_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	4.0e-140	72.4
WP_015471784.1\|3050721_3050967_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	3.7e-15	53.8
WP_015471496.1\|3051597_3052380_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|3052379_3053390_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_052456780.1\|3053652_3054240_-	hypothetical protein	NA	NA	NA	NA
3051461:3053476	attR	NA	NA	NA	NA
WP_040237372.1\|3054241_3055117_-	DUF4747 family protein	NA	NA	NA	NA
WP_015471788.1\|3055923_3057210_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.5e-83	42.4

DBSCAN-SWA_5

3093727 : 3168533

Escherichia_phage(23.08%)

transposase,integrase,protease

attL 3092841:3092858|attR 3101466:3101483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3092841:3092858	attL	NA	NA	NA	NA
WP_087943921.1\|3093727_3094871_+\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_015471495.1\|3096247_3097258_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|3097257_3098040_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_011050706.1\|3098530_3098872_-	hypothetical protein	NA	NA	NA	NA
WP_011050707.1\|3099037_3099718_-	hypothetical protein	NA	NA	NA	NA
WP_015471798.1\|3099863_3101381_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003483840.1\|3101694_3103764_+	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	3.1e-46	41.0
3101466:3101483	attR	NA	NA	NA	NA
WP_005913896.1\|3103770_3104091_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003483843.1\|3104188_3104782_+	recombination protein RecR	NA	NA	NA	NA
WP_003483844.1\|3104886_3105237_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_015471799.1\|3105355_3105889_-	Slp family lipoprotein	NA	NA	NA	NA
WP_011050711.1\|3105885_3107838_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_005913900.1\|3107830_3108787_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_003483851.1\|3108792_3109746_-	MoxR family ATPase	NA	NA	NA	NA
WP_005913901.1\|3109783_3111637_+	hypothetical protein	NA	NA	NA	NA
WP_011050713.1\|3111563_3112628_+	hypothetical protein	NA	NA	NA	NA
WP_015462930.1\|3112627_3114460_+	hypothetical protein	NA	NA	NA	NA
WP_033485135.1\|3114747_3115323_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_005913909.1\|3115434_3115944_+	hypothetical protein	NA	NA	NA	NA
WP_003483870.1\|3116041_3116236_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_011050716.1\|3116326_3117304_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005913914.1\|3117545_3117986_+	MEKHLA domain-containing protein	NA	NA	NA	NA
WP_011050718.1\|3118268_3119213_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_003483876.1\|3119295_3120039_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	7.5e-11	28.5
WP_002814322.1\|3120243_3120483_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.9e-10	44.6
WP_005913923.1\|3120624_3121860_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_005920500.1\|3122026_3123382_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_005928095.1\|3123442_3124516_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011050720.1\|3124512_3125472_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_003483889.1\|3125468_3125822_+	type IV fimbriae assembly protein	NA	NA	NA	NA
WP_015462931.1\|3126454_3126781_+	hypothetical protein	NA	NA	NA	NA
WP_041127157.1\|3127013_3128630_-	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_003483895.1\|3128757_3129654_+	methylisocitrate lyase	NA	NA	NA	NA
WP_003483896.1\|3129729_3130884_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_087978997.1\|3131029_3133621_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_075149957.1\|3133649_3133949_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_003483902.1\|3133945_3134122_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003483904.1\|3134166_3134364_-	hypothetical protein	NA	NA	NA	NA
WP_011050725.1\|3134355_3135555_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_003483908.1\|3135769_3137986_+	TonB-dependent receptor	NA	NA	NA	NA
WP_015462934.1\|3138062_3139061_+	nucleoside hydrolase	NA	NA	NA	NA
WP_003483912.1\|3139575_3139758_+	hypothetical protein	NA	NA	NA	NA
WP_015471805.1\|3139763_3144686_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_015471807.1\|3145012_3148000_+	TonB-dependent receptor	NA	NA	NA	NA
WP_150130647.1\|3148147_3149095_+	glycerophosphodiester phosphodiesterase family protein	A0A0S2MYI4	Enterococcus_phage	5.8e-08	37.7
WP_087978998.1\|3149500_3151921_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_011050731.1\|3152270_3152831_-	bacterioferritin	NA	NA	NA	NA
WP_015471810.1\|3152873_3153356_-	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	9.2e-26	38.3
WP_011050732.1\|3153518_3153995_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_003483926.1\|3154406_3155306_+	DnaJ domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	7.0e-19	28.0
WP_003483927.1\|3155782_3156169_+	response regulator	W8CYM9	Bacillus_phage	9.6e-10	31.8
WP_015471811.1\|3156856_3157984_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_003483929.1\|3157983_3158847_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_005913955.1\|3159231_3159696_+	hypothetical protein	NA	NA	NA	NA
WP_005913957.1\|3160594_3161887_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	5.8e-75	38.4
WP_011050734.1\|3162263_3164936_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.8e-78	28.1
WP_011050735.1\|3165659_3166373_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011050736.1\|3166443_3167034_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015471495.1\|3167522_3168533_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9

DBSCAN-SWA_6

3227524 : 3238176

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471495.1\|3227524_3228535_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|3228534_3229317_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_011050779.1\|3230204_3232316_-	catalase	A0A2K9L0T1	Tupanvirus	1.3e-137	48.1
WP_011050780.1\|3232518_3233373_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.4e-23	31.4
WP_015472410.1\|3233428_3235063_-	carboxylesterase family protein	A0A0M4JT58	Mollivirus	1.9e-38	30.3
WP_015472409.1\|3235242_3238176_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	9.5e-259	50.5

DBSCAN-SWA_7

4501371 : 4509147

Escherichia_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471495.1\|4501371_4502382_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|4502381_4503164_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471946.1\|4503666_4503849_+	Type IV secretory pathway, VirB10 component	NA	NA	NA	NA
WP_015471944.1\|4504695_4504893_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.4e-17	54.8
WP_015471943.1\|4504959_4506006_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.7e-107	55.7
WP_087979016.1\|4507354_4508365_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	7.7e-75	47.3
WP_015471496.1\|4508364_4509147_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3

DBSCAN-SWA_8

4575141 : 4595334

Xanthomonas_phage(66.67%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075150164.1\|4575141_4576182_+	inovirus-type Gp2 protein	A0A077JDC0	Xanthomonas_phage	5.0e-202	98.6
WP_040145279.1\|4576178_4576475_+	DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	2.4e-45	90.8
WP_040145263.1\|4576478_4576691_+	hypothetical protein	NA	NA	NA	NA
WP_087979017.1\|4576723_4576978_+	hypothetical protein	NA	NA	NA	NA
WP_150130649.1\|4577279_4578569_+	hypothetical protein	NA	NA	NA	NA
WP_040238598.1\|4578571_4578898_+	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_040155579.1\|4578894_4580097_+	zonular occludens toxin family protein	B1NI81	Stenotrophomonas_phage	4.7e-47	33.3
WP_040155576.1\|4580132_4580519_+	DUF4124 domain-containing protein	A0A077JCA3	Xanthomonas_phage	3.6e-33	58.5
WP_087979018.1\|4580558_4580975_-	hypothetical protein	A0A077JDD0	Xanthomonas_phage	3.1e-38	63.3
WP_087979019.1\|4580971_4581436_-	hypothetical protein	A0A077JCZ5	Xanthomonas_phage	2.5e-28	48.1
WP_080953886.1\|4581562_4581754_+	hypothetical protein	A0A077JGB8	Xanthomonas_phage	2.3e-17	77.4
WP_075150164.1\|4581834_4582875_+	inovirus-type Gp2 protein	A0A077JDC0	Xanthomonas_phage	5.0e-202	98.6
WP_087978984.1\|4583046_4584057_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	5.3e-76	47.9
WP_015471496.1\|4584056_4584839_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_080772608.1\|4585218_4585350_+\|coat	coat protein	NA	NA	NA	NA
WP_075241185.1\|4585325_4585442_+	hypothetical protein	NA	NA	NA	NA
WP_015471906.1\|4585469_4585598_+	hypothetical protein	NA	NA	NA	NA
WP_015471904.1\|4586936_4587257_+	hypothetical protein	NA	NA	NA	NA
WP_040145272.1\|4587258_4588593_+	filamentous phage phiLf protein I	Q4LAU4	Stenotrophomonas_phage	6.1e-136	57.0
WP_040145271.1\|4588612_4588924_-	hypothetical protein	A0A1W6DXV7	Xanthomonas_phage	4.6e-47	89.3
WP_015471901.1\|4588990_4589317_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	9.3e-14	43.0
WP_087979018.1\|4589500_4589917_+	hypothetical protein	A0A077JDD0	Xanthomonas_phage	3.1e-38	63.3
WP_040155576.1\|4589956_4590343_-	DUF4124 domain-containing protein	A0A077JCA3	Xanthomonas_phage	3.6e-33	58.5
WP_040155579.1\|4590378_4591581_-	zonular occludens toxin family protein	B1NI81	Stenotrophomonas_phage	4.7e-47	33.3
WP_040238598.1\|4591577_4591904_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_150130649.1\|4591906_4593196_-	hypothetical protein	NA	NA	NA	NA
WP_087979017.1\|4593497_4593752_-	hypothetical protein	NA	NA	NA	NA
WP_040145263.1\|4593784_4593997_-	hypothetical protein	NA	NA	NA	NA
WP_040145279.1\|4594000_4594297_-	DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	2.4e-45	90.8
WP_075150164.1\|4594293_4595334_-	inovirus-type Gp2 protein	A0A077JDC0	Xanthomonas_phage	5.0e-202	98.6

DBSCAN-SWA_9

4914553 : 4925323

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150129298.1\|4914553_4916512_-	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	9.6e-13	38.9
WP_011051115.1\|4916997_4917555_-	hypothetical protein	NA	NA	NA	NA
WP_003481884.1\|4917809_4918022_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_011051114.1\|4918161_4920810_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.3e-85	40.0
WP_003481873.1\|4920911_4921400_-	recombination regulator RecX	NA	NA	NA	NA
WP_075150152.1\|4921416_4921695_+	hypothetical protein	NA	NA	NA	NA
WP_011051113.1\|4921712_4922747_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
WP_005915033.1\|4922919_4923561_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_003481867.1\|4923646_4925323_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.4e-41	29.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP020889.1|WP_080953886.1|4581562_4581754_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP020889.1|WP_080953886.1|4581562_4581754_+|hypothetical-protein

4581562_4581754_+

63 aa aa

4575141-4595334

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP020889_1	TypeI	1.2\|2019361\|31\|NZ_CP020889\|PILER-CR	2019361-2019391	31	4588088-4588118	0
NZ_CP020889_1	TypeI	1.5\|2019361\|34\|NZ_CP020889\|CRISPRCasFinder,CRT	2019361-2019394	34	4588088-4588121	0

1. spacer 1.2|2019361|31|NZ_CP020889|PILER-CR matches to NZ_CP020889 position: 4588088-4588118, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 1.5|2019361|34|NZ_CP020889|CRISPRCasFinder,CRT matches to NZ_CP020889 position: 4588088-4588121, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020890

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020889

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information